AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0975810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0975810 MtrunA17_Chr6g0454541 85.361 485 23 6 1 441 1 481 0.0 720
Msa0975810 MtrunA17_Chr7g0218721 46.653 478 164 13 8 441 23 453 1.55e-94 292
Msa0975810 MtrunA17_Chr3g0109961 49.541 109 53 1 326 434 49 155 7.28e-27 105
Msa0975810 MtrunA17_Chr4g0051971 48.571 105 52 1 326 430 9 111 4.72e-25 99.8
Msa0975810 MtrunA17_Chr4g0040361 26.415 212 96 4 270 422 518 728 3.66e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0975810 AT5G15510.1 48.643 479 154 15 11 430 31 476 6.75e-121 361
Msa0975810 AT3G01015.1 46.934 473 164 14 11 432 32 468 3.17e-113 342
Msa0975810 AT5G15510.4 47.588 456 147 15 11 407 31 453 1.34e-106 323
Msa0975810 AT5G15510.3 47.588 456 147 15 11 407 31 453 1.34e-106 323
Msa0975810 AT5G15510.2 47.033 455 151 14 11 407 31 453 1.45e-105 323
Msa0975810 AT5G37478.4 54.639 97 44 0 324 420 36 132 3.78e-28 109
Msa0975810 AT5G37478.1 54.639 97 44 0 324 420 56 152 5.16e-28 109
Msa0975810 AT5G37478.2 54.639 97 44 0 324 420 23 119 8.84e-28 108
Msa0975810 AT1G03780.2 26.190 210 96 4 272 422 522 731 3.16e-13 72.4
Msa0975810 AT1G03780.3 26.190 210 96 4 272 422 522 731 3.23e-13 72.4

Find 87 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCACATTCTCAGTTTCTA+AGG 0.217493 6_4:-9604906 None:intergenic
TAAGGCATTGGCTGCGCTTT+AGG 0.259331 6_4:-9607839 None:intergenic
AATTTGATTATTCATGATAT+TGG 0.263242 6_4:+9605271 Msa0975810:CDS
AGAAATATTCAATTTGTATA+TGG 0.272800 6_4:+9608375 Msa0975810:three_prime_UTR
AGGAAGAAATTAGAAGATTA+AGG 0.282966 6_4:+9607804 Msa0975810:CDS
TTTCGATTAGAAAACTCATT+AGG 0.285358 6_4:-9604929 None:intergenic
ATGTGAAACTTTGGTTCTTT+TGG 0.287997 6_4:-9608216 None:intergenic
CATTACCTCCTCGGAATAAA+TGG 0.310323 6_4:-9607872 None:intergenic
ATAAATGGTCTGTCAAAATA+AGG 0.316908 6_4:-9607857 None:intergenic
AGAGGATGATAAGAAGAATA+AGG 0.324799 6_4:+9605507 Msa0975810:CDS
GGGTTTCAGTTACATCTTCT+TGG 0.324833 6_4:+9605668 Msa0975810:CDS
TCAAGCACTTGATCTTCTTA+TGG 0.325673 6_4:-9608245 None:intergenic
TTTGATAGAACAGCAGAAAA+TGG 0.326431 6_4:+9607645 Msa0975810:CDS
AGGAATAGTGTACCTGAAAA+TGG 0.328347 6_4:+9605406 Msa0975810:CDS
TGTTCATCACCATCCTTAAC+AGG 0.329445 6_4:-9605568 None:intergenic
TTCGATTAGAAAACTCATTA+GGG 0.343147 6_4:-9604928 None:intergenic
TCTAAGGGTTTCTTCTTCTC+TGG 0.345090 6_4:-9604890 None:intergenic
AGAAGAATAAGGTGATGAAA+TGG 0.354081 6_4:+9605518 Msa0975810:CDS
CATGGAAGACCTTGTGCAAT+AGG 0.357245 6_4:-9606409 None:intergenic
GCAATTTCAACAACCTGTTA+AGG 0.359084 6_4:+9605555 Msa0975810:CDS
CTTCAGAAATCGTTGAATAA+AGG 0.377474 6_4:+9604956 Msa0975810:CDS
GACATCTGAACAACTTGGAT+TGG 0.394114 6_4:+9605639 Msa0975810:CDS
AGAGGAAGAAAATGAAGAAA+AGG 0.403515 6_4:+9605330 Msa0975810:CDS
GGTTTCAGTTACATCTTCTT+GGG 0.408587 6_4:+9605669 Msa0975810:CDS
CTATGAAGCTTCACGTCAAT+AGG 0.408886 6_4:-9607479 None:intergenic
GAAGAATAAGGTGATGAAAT+GGG 0.424705 6_4:+9605519 Msa0975810:CDS
GGTTGTTGAAATTGCAATCC+TGG 0.428251 6_4:-9605547 None:intergenic
GAAAGAGAAGAATGAGGAAG+AGG 0.431092 6_4:+9605483 Msa0975810:CDS
GAGGAAGAAAATGAAGAAAA+GGG 0.436113 6_4:+9605331 Msa0975810:CDS
GGCTTTGTGCTTTCTTTCAC+CGG 0.443138 6_4:-9607458 None:intergenic
GAAGAATGAGGAAGAGGAAG+AGG 0.447358 6_4:+9605489 Msa0975810:CDS
ATTGTAGTTCAATGGTGAAA+AGG 0.450131 6_4:+9605356 Msa0975810:CDS
TCGCGCTGAATTTGATCATC+AGG 0.452548 6_4:+9607520 Msa0975810:CDS
ACCTCAGTCCTTAGCTTGAA+AGG 0.454283 6_4:-9606212 None:intergenic
TGATCAAAGTCCTAAGAAAA+CGG 0.455541 6_4:+9605066 Msa0975810:CDS
AGAACAGCAGAAAATGGAAA+TGG 0.455873 6_4:+9607651 Msa0975810:CDS
GATCAAAGTCCTAAGAAAAC+GGG 0.463640 6_4:+9605067 Msa0975810:CDS
TCTTCTTGGGATTGTGGCAG+TGG 0.465032 6_4:+9605682 Msa0975810:CDS
GTTACATCTTCTTGGGATTG+TGG 0.472621 6_4:+9605676 Msa0975810:CDS
GGGATTGTGGCAGTGGAAGA+AGG 0.477674 6_4:+9605689 Msa0975810:CDS
AACAACTTGGATTGGATCAA+AGG 0.483100 6_4:+9605647 Msa0975810:CDS
AAAGGGTAATTGTAGTTCAA+TGG 0.483615 6_4:+9605348 Msa0975810:CDS
AGAAATTAGAAGATTAAGGA+AGG 0.491659 6_4:+9607808 Msa0975810:CDS
ACAACTTGGATTGGATCAAA+GGG 0.495261 6_4:+9605648 Msa0975810:CDS
AAATGGAAAAGTGATGCATT+TGG 0.498366 6_4:+9605423 Msa0975810:CDS
GCCCTTACAGCTGGCTGAAG+AGG 0.498637 6_4:+9607784 Msa0975810:intron
GAAGCTTCATAGTGATTTGA+GGG 0.499102 6_4:+9607490 Msa0975810:CDS
TGAAGCTTCATAGTGATTTG+AGG 0.503817 6_4:+9607489 Msa0975810:CDS
GGAAATGGAAAGGCAACAAA+AGG 0.506949 6_4:+9607666 Msa0975810:CDS
CTATTGCACAAGGTCTTCCA+TGG 0.513189 6_4:+9606410 Msa0975810:CDS
AGAAGAACAATTGATGAAGA+AGG 0.519315 6_4:+9606348 Msa0975810:CDS
CTCTGACGAATTCTCTTCTG+CGG 0.520745 6_4:-9605013 None:intergenic
TTATTCAACGATTTCTGAAG+TGG 0.528946 6_4:-9604953 None:intergenic
GTCAGAAACCTTTCAAGCTA+AGG 0.529285 6_4:+9606204 Msa0975810:CDS
AGTGTGTTTGCGAAGCGTAT+CGG 0.531754 6_4:+9605125 Msa0975810:intron
AGAGAGTAATGGAAGAAGCA+AGG 0.532326 6_4:+9605386 Msa0975810:CDS
TGGTGAGGTATGTGAAACTT+TGG 0.533377 6_4:-9608225 None:intergenic
TTCACATTCTCAGTTTCTAA+GGG 0.533557 6_4:-9604905 None:intergenic
AAAACGGGTTTGTGTAAATG+TGG 0.539380 6_4:+9605082 Msa0975810:CDS
AAGGAGAAGAGAGAGAGTAA+TGG 0.549490 6_4:+9605375 Msa0975810:CDS
GCAGTGCTTGCTAAAACCTC+CGG 0.554487 6_4:+9607439 Msa0975810:intron
GTGATGAAATGGGCATTACC+AGG 0.561341 6_4:+9605529 Msa0975810:CDS
TTGATCAACCATTACCTCCT+CGG 0.562441 6_4:-9607881 None:intergenic
CACTTGATCTTCTTATGGTG+AGG 0.566706 6_4:-9608240 None:intergenic
ACTTTGACATCTGAACAACT+TGG 0.567825 6_4:+9605634 Msa0975810:CDS
TCAGGTTCATCAATAGTCCA+TGG 0.571822 6_4:-9606427 None:intergenic
GTTTGAGAGAATCACAAGAA+GGG 0.574510 6_4:+9605149 Msa0975810:CDS
AAGGGAGAAAGAGAAGAATG+AGG 0.575728 6_4:+9605477 Msa0975810:intron
TTTCAACAACCTGTTAAGGA+TGG 0.578215 6_4:+9605559 Msa0975810:CDS
GGTCTGTCAAAATAAGGCAT+TGG 0.582294 6_4:-9607851 None:intergenic
TATTCAACGATTTCTGAAGT+GGG 0.582434 6_4:-9604952 None:intergenic
ACGTGAAAGTGTTCTTGATG+AGG 0.584228 6_4:+9605237 Msa0975810:CDS
AGTTTGAGAGAATCACAAGA+AGG 0.589253 6_4:+9605148 Msa0975810:CDS
TTGACAGACCATTTATTCCG+AGG 0.591323 6_4:+9607864 Msa0975810:CDS
AGCAGAAAATGGAAATGGAA+AGG 0.592553 6_4:+9607656 Msa0975810:CDS
CGATGAAGAAGAAGGCGTAG+AGG 0.596905 6_4:+9605312 Msa0975810:CDS
TTTGTGCTTTCTTTCACCGG+AGG 0.623077 6_4:-9607455 None:intergenic
AAAAGTGATGCATTTGGTGA+AGG 0.627407 6_4:+9605429 Msa0975810:CDS
AAATGTGGAGAAAATAGTGA+TGG 0.637023 6_4:+9605097 Msa0975810:CDS
TCACATCAGCAAATGACCTG+TGG 0.638400 6_4:-9608350 None:intergenic
GAAGCTGTTTGTGATGATGA+TGG 0.640877 6_4:+9605595 Msa0975810:CDS
GAGAATGTTGATGATTCCAC+AGG 0.646533 6_4:+9608334 Msa0975810:intron
ACAGACCATTTATTCCGAGG+AGG 0.649331 6_4:+9607867 Msa0975810:CDS
ATGAGAATTCCTATTGCACA+AGG 0.660872 6_4:+9606400 Msa0975810:CDS
ATGGACTATTGATGAACCTG+AGG 0.663121 6_4:+9606429 Msa0975810:CDS
ACCTTTCAAGCTAAGGACTG+AGG 0.672965 6_4:+9606211 Msa0975810:CDS
ATAATGCTATTGTAGCAAAG+GGG 0.759633 6_4:+9606316 Msa0975810:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTGATTATTCATGATAT+TGG + chr6_4:9605271-9605290 Msa0975810:CDS 15.0%
!!! TTTCGAAAAAGAGAATTTTT+TGG + chr6_4:9605174-9605193 Msa0975810:CDS 20.0%
!!! CTCAAATTGTTATTTGTTAT+CGG + chr6_4:9606009-9606028 Msa0975810:intron 20.0%
!!! TAATTGATGACACAAATAAT+TGG + chr6_4:9606234-9606253 Msa0975810:intron 20.0%
!!! AATTTCTTCAAATTTTTCAG+TGG + chr6_4:9606271-9606290 Msa0975810:intron 20.0%
!! TAAAATCTCATAGTCAAATT+TGG + chr6_4:9606501-9606520 Msa0975810:intron 20.0%
!! TTTGATAAAGAAAAACATTG+AGG - chr6_4:9607217-9607236 None:intergenic 20.0%
!!! GTTATTGATTTGAAATCAAT+TGG - chr6_4:9608070-9608089 None:intergenic 20.0%
!! ACAAAAAGAGACAAAAATAA+TGG - chr6_4:9608149-9608168 None:intergenic 20.0%
!!! TTTGTCTCATCATTATATTT+TGG + chr6_4:9608164-9608183 Msa0975810:intron 20.0%
!!! ATCATTATATTTTGGTTTGA+AGG + chr6_4:9608172-9608191 Msa0975810:intron 20.0%
! TTCGATTAGAAAACTCATTA+GGG - chr6_4:9604931-9604950 None:intergenic 25.0%
! TTTCGATTAGAAAACTCATT+AGG - chr6_4:9604932-9604951 None:intergenic 25.0%
! AGAGGTTACTTAGTATAAAA+AGG + chr6_4:9605458-9605477 Msa0975810:intron 25.0%
! GAGGTTACTTAGTATAAAAA+GGG + chr6_4:9605459-9605478 Msa0975810:intron 25.0%
!!! AAAATGCAACAAGCTTTAAA+GGG - chr6_4:9605745-9605764 None:intergenic 25.0%
!! TAAAATGCAACAAGCTTTAA+AGG - chr6_4:9605746-9605765 None:intergenic 25.0%
!!! GAGTTTGATTTGATTCATTT+TGG + chr6_4:9605769-9605788 Msa0975810:intron 25.0%
! CATGCCTTAATAAAAAATGT+CGG - chr6_4:9605940-9605959 None:intergenic 25.0%
!!! ATTTTTTATTAAGGCATGTC+CGG + chr6_4:9605942-9605961 Msa0975810:intron 25.0%
! TCTAATTTAATCACATGTCT+CGG - chr6_4:9605977-9605996 None:intergenic 25.0%
!!! AAATTTTTCAGTGGCTATAT+TGG + chr6_4:9606280-9606299 Msa0975810:intron 25.0%
! CAAAGTAAGAAAAATTACAG+TGG + chr6_4:9606695-9606714 Msa0975810:intron 25.0%
!! GTAAAAACTTTTTACACTGA+CGG + chr6_4:9606811-9606830 Msa0975810:intron 25.0%
! ATGCTAGGATATTAGATATA+AGG - chr6_4:9606916-9606935 None:intergenic 25.0%
! ATGTAATGTACTGTTCTAAT+TGG - chr6_4:9606965-9606984 None:intergenic 25.0%
! GATTAACCTAACCTTATTAA+GGG - chr6_4:9607070-9607089 None:intergenic 25.0%
! AGATTAACCTAACCTTATTA+AGG - chr6_4:9607071-9607090 None:intergenic 25.0%
! TTCATCTTCATATTATGCTT+AGG - chr6_4:9607280-9607299 None:intergenic 25.0%
! TGAATCTATGATAATTCTGT+TGG + chr6_4:9607378-9607397 Msa0975810:intron 25.0%
! ACAAAAAATGCTTAGACTAA+TGG - chr6_4:9607418-9607437 None:intergenic 25.0%
! TCATGATGTGTAAAACTAAA+GGG - chr6_4:9607576-9607595 None:intergenic 25.0%
! TTCATGATGTGTAAAACTAA+AGG - chr6_4:9607577-9607596 None:intergenic 25.0%
!! TTGATTTGAGATGTGAAAAT+TGG - chr6_4:9607703-9607722 None:intergenic 25.0%
! CACTTTAGATAAAAGAAACA+TGG - chr6_4:9607744-9607763 None:intergenic 25.0%
! AGGAAGAAATTAGAAGATTA+AGG + chr6_4:9607804-9607823 Msa0975810:CDS 25.0%
! AGAAATTAGAAGATTAAGGA+AGG + chr6_4:9607808-9607827 Msa0975810:CDS 25.0%
! ATAAATGGTCTGTCAAAATA+AGG - chr6_4:9607860-9607879 None:intergenic 25.0%
!!! ATATAAAGTTGATTTGCGAA+AGG + chr6_4:9608033-9608052 Msa0975810:intron 25.0%
TTCACATTCTCAGTTTCTAA+GGG - chr6_4:9604908-9604927 None:intergenic 30.0%
!! TATTCAACGATTTCTGAAGT+GGG - chr6_4:9604955-9604974 None:intergenic 30.0%
! TTATTCAACGATTTCTGAAG+TGG - chr6_4:9604956-9604975 None:intergenic 30.0%
CTTCAGAAATCGTTGAATAA+AGG + chr6_4:9604956-9604975 Msa0975810:CDS 30.0%
TGATCAAAGTCCTAAGAAAA+CGG + chr6_4:9605066-9605085 Msa0975810:CDS 30.0%
AAATGTGGAGAAAATAGTGA+TGG + chr6_4:9605097-9605116 Msa0975810:CDS 30.0%
AGAAAAATCGATGAAGAAGA+AGG + chr6_4:9605304-9605323 Msa0975810:CDS 30.0%
AGAGGAAGAAAATGAAGAAA+AGG + chr6_4:9605330-9605349 Msa0975810:CDS 30.0%
GAGGAAGAAAATGAAGAAAA+GGG + chr6_4:9605331-9605350 Msa0975810:CDS 30.0%
AAAGGGTAATTGTAGTTCAA+TGG + chr6_4:9605348-9605367 Msa0975810:CDS 30.0%
ATTGTAGTTCAATGGTGAAA+AGG + chr6_4:9605356-9605375 Msa0975810:CDS 30.0%
AAATGGAAAAGTGATGCATT+TGG + chr6_4:9605423-9605442 Msa0975810:CDS 30.0%
AGAGGATGATAAGAAGAATA+AGG + chr6_4:9605507-9605526 Msa0975810:CDS 30.0%
AGAAGAATAAGGTGATGAAA+TGG + chr6_4:9605518-9605537 Msa0975810:CDS 30.0%
GAAGAATAAGGTGATGAAAT+GGG + chr6_4:9605519-9605538 Msa0975810:CDS 30.0%
!!! AGCACCGACATTTTTTATTA+AGG + chr6_4:9605933-9605952 Msa0975810:intron 30.0%
AAAAACAACCTTATGAAGCA+GGG - chr6_4:9606088-9606107 None:intergenic 30.0%
!!! TTTCTGTGTTTTTTAGAGCT+TGG + chr6_4:9606121-9606140 Msa0975810:intron 30.0%
TTGGAATCATCTAGTACTAT+TGG + chr6_4:9606140-9606159 Msa0975810:intron 30.0%
CATAATGCTATTGTAGCAAA+GGG + chr6_4:9606315-9606334 Msa0975810:intron 30.0%
ATAATGCTATTGTAGCAAAG+GGG + chr6_4:9606316-9606335 Msa0975810:intron 30.0%
AGAAGAACAATTGATGAAGA+AGG + chr6_4:9606348-9606367 Msa0975810:CDS 30.0%
AGCATATGCACTTTAAACTA+AGG - chr6_4:9606478-9606497 None:intergenic 30.0%
GTAATGTGTTAACTAAGCAT+AGG + chr6_4:9606547-9606566 Msa0975810:intron 30.0%
CTATATCCATAATTGCATGA+TGG - chr6_4:9606617-9606636 None:intergenic 30.0%
!! TCATCACTGATTTAAGCTAT+TGG - chr6_4:9606646-9606665 None:intergenic 30.0%
CTAAAATCATACCACATGAT+GGG - chr6_4:9606731-9606750 None:intergenic 30.0%
! TCTAAAATCATACCACATGA+TGG - chr6_4:9606732-9606751 None:intergenic 30.0%
! TCAAGACAGTGTTTTATCAT+TGG - chr6_4:9607094-9607113 None:intergenic 30.0%
TATCGAGTAAATTCAGTTTC+AGG + chr6_4:9607129-9607148 Msa0975810:intron 30.0%
CAAATCTGTGATAATTCTGT+TGG + chr6_4:9607233-9607252 Msa0975810:intron 30.0%
TCATATTATGCTTAGGCTAA+TGG - chr6_4:9607273-9607292 None:intergenic 30.0%
GATTCAATCATCTTCATGTT+AGG - chr6_4:9607364-9607383 None:intergenic 30.0%
CATGATGTGTAAAACTAAAG+GGG - chr6_4:9607575-9607594 None:intergenic 30.0%
TTTGATAGAACAGCAGAAAA+TGG + chr6_4:9607645-9607664 Msa0975810:CDS 30.0%
AATCTCATAATGAACACTCT+TGG + chr6_4:9607902-9607921 Msa0975810:intron 30.0%
CATAACACAGTTATTGATCT+TGG + chr6_4:9607979-9607998 Msa0975810:intron 30.0%
TCATTCGATCTCAAAATCAA+TGG + chr6_4:9608002-9608021 Msa0975810:intron 30.0%
ACACACACTTTAATTGATCT+CGG - chr6_4:9608092-9608111 None:intergenic 30.0%
!!! TTTGGTTCTTTTGGTATAGT+TGG - chr6_4:9608210-9608229 None:intergenic 30.0%
!!! ATGTGAAACTTTGGTTCTTT+TGG - chr6_4:9608219-9608238 None:intergenic 30.0%
GTTCACATTCTCAGTTTCTA+AGG - chr6_4:9604909-9604928 None:intergenic 35.0%
GATCAAAGTCCTAAGAAAAC+GGG + chr6_4:9605067-9605086 Msa0975810:CDS 35.0%
! TTACACAAACCCGTTTTCTT+AGG - chr6_4:9605079-9605098 None:intergenic 35.0%
! AAAACGGGTTTGTGTAAATG+TGG + chr6_4:9605082-9605101 Msa0975810:CDS 35.0%
AGTTTGAGAGAATCACAAGA+AGG + chr6_4:9605148-9605167 Msa0975810:CDS 35.0%
GTTTGAGAGAATCACAAGAA+GGG + chr6_4:9605149-9605168 Msa0975810:CDS 35.0%
AGGAATAGTGTACCTGAAAA+TGG + chr6_4:9605406-9605425 Msa0975810:CDS 35.0%
!! TGCATCACTTTTCCATTTTC+AGG - chr6_4:9605421-9605440 None:intergenic 35.0%
! AAAAGTGATGCATTTGGTGA+AGG + chr6_4:9605429-9605448 Msa0975810:CDS 35.0%
GCAATTTCAACAACCTGTTA+AGG + chr6_4:9605555-9605574 Msa0975810:CDS 35.0%
TTTCAACAACCTGTTAAGGA+TGG + chr6_4:9605559-9605578 Msa0975810:CDS 35.0%
ACTTTGACATCTGAACAACT+TGG + chr6_4:9605634-9605653 Msa0975810:CDS 35.0%
! AACAACTTGGATTGGATCAA+AGG + chr6_4:9605647-9605666 Msa0975810:CDS 35.0%
! ACAACTTGGATTGGATCAAA+GGG + chr6_4:9605648-9605667 Msa0975810:CDS 35.0%
GGTTTCAGTTACATCTTCTT+GGG + chr6_4:9605669-9605688 Msa0975810:CDS 35.0%
CAAAAACAACCTTATGAAGC+AGG - chr6_4:9606089-9606108 None:intergenic 35.0%
GAATCATCTAGTACTATTGG+AGG + chr6_4:9606143-9606162 Msa0975810:intron 35.0%
CCTTTGCTACAATAGCATTA+TGG - chr6_4:9606317-9606336 None:intergenic 35.0%
CCATAATGCTATTGTAGCAA+AGG + chr6_4:9606314-9606333 Msa0975810:intron 35.0%
ATGAGAATTCCTATTGCACA+AGG + chr6_4:9606400-9606419 Msa0975810:CDS 35.0%
GATTGTCCATCATGCAATTA+TGG + chr6_4:9606608-9606627 Msa0975810:intron 35.0%
!! ATGATCATTTTTGCTCTTGC+TGG + chr6_4:9607032-9607051 Msa0975810:intron 35.0%
!! TGATCATTTTTGCTCTTGCT+GGG + chr6_4:9607033-9607052 Msa0975810:intron 35.0%
TTGTTTGGCTACCCTTAATA+AGG + chr6_4:9607056-9607075 Msa0975810:intron 35.0%
ACTCGATATCAGCTGATATA+CGG - chr6_4:9607117-9607136 None:intergenic 35.0%
ATTGAGGCAAACTCAGAAAA+TGG - chr6_4:9607201-9607220 None:intergenic 35.0%
AATGAAGGTTCAATGCAGTT+AGG - chr6_4:9607313-9607332 None:intergenic 35.0%
AAGTTCACTAAGTCAATCTC+AGG - chr6_4:9607338-9607357 None:intergenic 35.0%
!! ATAATTCTGTTGGTAGCTTC+TGG + chr6_4:9607388-9607407 Msa0975810:intron 35.0%
TGAAGCTTCATAGTGATTTG+AGG + chr6_4:9607489-9607508 Msa0975810:CDS 35.0%
GAAGCTTCATAGTGATTTGA+GGG + chr6_4:9607490-9607509 Msa0975810:CDS 35.0%
GTAAAACTAAAGGGGAAAGA+AGG - chr6_4:9607567-9607586 None:intergenic 35.0%
TGATGAATGCTTAACTGTGT+AGG + chr6_4:9607606-9607625 Msa0975810:intron 35.0%
AGAACAGCAGAAAATGGAAA+TGG + chr6_4:9607651-9607670 Msa0975810:CDS 35.0%
AGCAGAAAATGGAAATGGAA+AGG + chr6_4:9607656-9607675 Msa0975810:CDS 35.0%
AGAAACATGGTAACTCAATC+AGG - chr6_4:9607731-9607750 None:intergenic 35.0%
TATATATATGCCCTTACAGC+TGG + chr6_4:9607775-9607794 Msa0975810:intron 35.0%
TCTGGCGTATTATTGAGATT+CGG + chr6_4:9607931-9607950 Msa0975810:intron 35.0%
GATCAATAACTGTGTTATGC+AGG - chr6_4:9607978-9607997 None:intergenic 35.0%
GATCTCAAAATCAATGGCAA+AGG + chr6_4:9608008-9608027 Msa0975810:intron 35.0%
TCAAGCACTTGATCTTCTTA+TGG - chr6_4:9608248-9608267 None:intergenic 35.0%
TCTAAGGGTTTCTTCTTCTC+TGG - chr6_4:9604893-9604912 None:intergenic 40.0%
!! ACGTGAAAGTGTTCTTGATG+AGG + chr6_4:9605237-9605256 Msa0975810:CDS 40.0%
AAGGAGAAGAGAGAGAGTAA+TGG + chr6_4:9605375-9605394 Msa0975810:CDS 40.0%
! AGAGAGTAATGGAAGAAGCA+AGG + chr6_4:9605386-9605405 Msa0975810:CDS 40.0%
!! ATTTGGTGAAGGCTTTTGAG+AGG + chr6_4:9605440-9605459 Msa0975810:CDS 40.0%
AAGGGAGAAAGAGAAGAATG+AGG + chr6_4:9605477-9605496 Msa0975810:intron 40.0%
GAAAGAGAAGAATGAGGAAG+AGG + chr6_4:9605483-9605502 Msa0975810:CDS 40.0%
GGTTGTTGAAATTGCAATCC+TGG - chr6_4:9605550-9605569 None:intergenic 40.0%
TGTTCATCACCATCCTTAAC+AGG - chr6_4:9605571-9605590 None:intergenic 40.0%
! GAAGCTGTTTGTGATGATGA+TGG + chr6_4:9605595-9605614 Msa0975810:CDS 40.0%
GACATCTGAACAACTTGGAT+TGG + chr6_4:9605639-9605658 Msa0975810:CDS 40.0%
GGGTTTCAGTTACATCTTCT+TGG + chr6_4:9605668-9605687 Msa0975810:CDS 40.0%
GTTACATCTTCTTGGGATTG+TGG + chr6_4:9605676-9605695 Msa0975810:CDS 40.0%
ACAAACACAGACACAGATAC+TGG - chr6_4:9606063-9606082 None:intergenic 40.0%
CATCTAGTACTATTGGAGGA+AGG + chr6_4:9606147-9606166 Msa0975810:intron 40.0%
GTCAGAAACCTTTCAAGCTA+AGG + chr6_4:9606204-9606223 Msa0975810:CDS 40.0%
!! TGGCTATATTGGTGATGCAT+TGG + chr6_4:9606291-9606310 Msa0975810:intron 40.0%
TCAGGTTCATCAATAGTCCA+TGG - chr6_4:9606430-9606449 None:intergenic 40.0%
! ATGGACTATTGATGAACCTG+AGG + chr6_4:9606429-9606448 Msa0975810:CDS 40.0%
CTATTGATGAACCTGAGGTA+AGG + chr6_4:9606434-9606453 Msa0975810:intron 40.0%
TGAGAAAATGACCTTACCTC+AGG - chr6_4:9606448-9606467 None:intergenic 40.0%
GATGGACAATCAGAGACTAA+TGG - chr6_4:9606599-9606618 None:intergenic 40.0%
GTACTTTACAACCCATCATG+TGG + chr6_4:9606717-9606736 Msa0975810:intron 40.0%
TCCTAGCATTACACATGACA+AGG + chr6_4:9606927-9606946 Msa0975810:intron 40.0%
TCCTTGTCATGTGTAATGCT+AGG - chr6_4:9606931-9606950 None:intergenic 40.0%
TGGCTACCCTTAATAAGGTT+AGG + chr6_4:9607061-9607080 Msa0975810:intron 40.0%
AGTCAATCTCAGGCTAATGA+AGG - chr6_4:9607328-9607347 None:intergenic 40.0%
CTATGAAGCTTCACGTCAAT+AGG - chr6_4:9607482-9607501 None:intergenic 40.0%
GCTGAATTTGATCATCAGGT+AGG + chr6_4:9607524-9607543 Msa0975810:intron 40.0%
TGAATGCTTAACTGTGTAGG+TGG + chr6_4:9607609-9607628 Msa0975810:intron 40.0%
GGAAATGGAAAGGCAACAAA+AGG + chr6_4:9607666-9607685 Msa0975810:CDS 40.0%
GGTCTGTCAAAATAAGGCAT+TGG - chr6_4:9607854-9607873 None:intergenic 40.0%
TTGACAGACCATTTATTCCG+AGG + chr6_4:9607864-9607883 Msa0975810:CDS 40.0%
CATTACCTCCTCGGAATAAA+TGG - chr6_4:9607875-9607894 None:intergenic 40.0%
CATTTATTCCGAGGAGGTAA+TGG + chr6_4:9607873-9607892 Msa0975810:intron 40.0%
TTGATCAACCATTACCTCCT+CGG - chr6_4:9607884-9607903 None:intergenic 40.0%
! GAACACTCTTGGAAGTTTTC+TGG + chr6_4:9607913-9607932 Msa0975810:intron 40.0%
TGGTGAGGTATGTGAAACTT+TGG - chr6_4:9608228-9608247 None:intergenic 40.0%
CACTTGATCTTCTTATGGTG+AGG - chr6_4:9608243-9608262 None:intergenic 40.0%
CTTCAACTGAGAGAATTCAG+AGG + chr6_4:9608299-9608318 Msa0975810:intron 40.0%
!! GAGAATGTTGATGATTCCAC+AGG + chr6_4:9608334-9608353 Msa0975810:intron 40.0%
CTCTGACGAATTCTCTTCTG+CGG - chr6_4:9605016-9605035 None:intergenic 45.0%
AGTGTGTTTGCGAAGCGTAT+CGG + chr6_4:9605125-9605144 Msa0975810:intron 45.0%
GAAGAATGAGGAAGAGGAAG+AGG + chr6_4:9605489-9605508 Msa0975810:CDS 45.0%
GTGATGAAATGGGCATTACC+AGG + chr6_4:9605529-9605548 Msa0975810:CDS 45.0%
GTGTGTAGCAGGAATTCTTC+TGG + chr6_4:9605843-9605862 Msa0975810:intron 45.0%
TGTAGCAGGAATTCTTCTGG+TGG + chr6_4:9605846-9605865 Msa0975810:intron 45.0%
GTTTGTGTCCCTGCTTCATA+AGG + chr6_4:9606077-9606096 Msa0975810:intron 45.0%
CTAGTACTATTGGAGGAAGG+AGG + chr6_4:9606150-9606169 Msa0975810:intron 45.0%
ACCTTTCAAGCTAAGGACTG+AGG + chr6_4:9606211-9606230 Msa0975810:CDS 45.0%
! ACCTCAGTCCTTAGCTTGAA+AGG - chr6_4:9606215-9606234 None:intergenic 45.0%
CATGGAAGACCTTGTGCAAT+AGG - chr6_4:9606412-9606431 None:intergenic 45.0%
CTATTGCACAAGGTCTTCCA+TGG + chr6_4:9606410-9606429 Msa0975810:CDS 45.0%
TTTGCTCTTGCTGGGTTGTT+TGG + chr6_4:9607041-9607060 Msa0975810:intron 45.0%
TTTGTGCTTTCTTTCACCGG+AGG - chr6_4:9607458-9607477 None:intergenic 45.0%
! GGCTTTGTGCTTTCTTTCAC+CGG - chr6_4:9607461-9607480 None:intergenic 45.0%
TCGCGCTGAATTTGATCATC+AGG + chr6_4:9607520-9607539 Msa0975810:CDS 45.0%
ACAGACCATTTATTCCGAGG+AGG + chr6_4:9607867-9607886 Msa0975810:CDS 45.0%
! ACGTGCATTTTGCACTGTTG+TGG + chr6_4:9608115-9608134 Msa0975810:intron 45.0%
TCACATCAGCAAATGACCTG+TGG - chr6_4:9608353-9608372 None:intergenic 45.0%
! CGATGAAGAAGAAGGCGTAG+AGG + chr6_4:9605312-9605331 Msa0975810:CDS 50.0%
TCTTCTTGGGATTGTGGCAG+TGG + chr6_4:9605682-9605701 Msa0975810:CDS 50.0%
TCTTGTGCAGTGTGTGTAGC+AGG + chr6_4:9605832-9605851 Msa0975810:intron 50.0%
GTACTATTGGAGGAAGGAGG+TGG + chr6_4:9606153-9606172 Msa0975810:intron 50.0%
! GCAGTGCTTGCTAAAACCTC+CGG + chr6_4:9607439-9607458 Msa0975810:intron 50.0%
TCCTCTTCAGCCAGCTGTAA+GGG - chr6_4:9607788-9607807 None:intergenic 50.0%
TTCCTCTTCAGCCAGCTGTA+AGG - chr6_4:9607789-9607808 None:intergenic 50.0%
!! TAAGGCATTGGCTGCGCTTT+AGG - chr6_4:9607842-9607861 None:intergenic 50.0%
GGGATTGTGGCAGTGGAAGA+AGG + chr6_4:9605689-9605708 Msa0975810:CDS 55.0%
!! CATGTCTCGGTGTCAGACAC+CGG - chr6_4:9605964-9605983 None:intergenic 55.0%
GCCCTTACAGCTGGCTGAAG+AGG + chr6_4:9607784-9607803 Msa0975810:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 9604884 9608396 9604884 ID=Msa0975810;Name=Msa0975810
chr6_4 mRNA 9604884 9608396 9604884 ID=Msa0975810-mRNA-1;Parent=Msa0975810;Name=Msa0975810-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.6|0.54|1|0.4|0.27|11|58|441
chr6_4 exon 9604884 9605121 9604884 ID=Msa0975810-mRNA-1:exon:3495;Parent=Msa0975810-mRNA-1
chr6_4 exon 9605140 9605292 9605140 ID=Msa0975810-mRNA-1:exon:3496;Parent=Msa0975810-mRNA-1
chr6_4 exon 9605302 9605461 9605302 ID=Msa0975810-mRNA-1:exon:3497;Parent=Msa0975810-mRNA-1
chr6_4 exon 9605480 9605710 9605480 ID=Msa0975810-mRNA-1:exon:3498;Parent=Msa0975810-mRNA-1
chr6_4 exon 9606169 9606232 9606169 ID=Msa0975810-mRNA-1:exon:3499;Parent=Msa0975810-mRNA-1
chr6_4 exon 9606331 9606450 9606331 ID=Msa0975810-mRNA-1:exon:3500;Parent=Msa0975810-mRNA-1
chr6_4 exon 9607443 9607541 9607443 ID=Msa0975810-mRNA-1:exon:3501;Parent=Msa0975810-mRNA-1
chr6_4 exon 9607628 9607687 9607628 ID=Msa0975810-mRNA-1:exon:3502;Parent=Msa0975810-mRNA-1
chr6_4 exon 9607794 9607888 9607794 ID=Msa0975810-mRNA-1:exon:3503;Parent=Msa0975810-mRNA-1
chr6_4 exon 9608194 9608297 9608194 ID=Msa0975810-mRNA-1:exon:3504;Parent=Msa0975810-mRNA-1
chr6_4 exon 9608337 9608396 9608337 ID=Msa0975810-mRNA-1:exon:3505;Parent=Msa0975810-mRNA-1
chr6_4 CDS 9604884 9605121 9604884 ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1
chr6_4 CDS 9605140 9605292 9605140 ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1
chr6_4 CDS 9605302 9605461 9605302 ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1
chr6_4 CDS 9605480 9605710 9605480 ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1
chr6_4 CDS 9606169 9606232 9606169 ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1
chr6_4 CDS 9606331 9606450 9606331 ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1
chr6_4 CDS 9607443 9607541 9607443 ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1
chr6_4 CDS 9607628 9607687 9607628 ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1
chr6_4 CDS 9607794 9607888 9607794 ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1
chr6_4 CDS 9608194 9608297 9608194 ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1
chr6_4 CDS 9608337 9608338 9608337 ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1
chr6_4 three_prime_UTR 9608339 9608396 9608339 ID=Msa0975810-mRNA-1:three_prime_utr;Parent=Msa0975810-mRNA-1
Gene Sequence

>Msa0975810

ATGACACCAGAGAAGAAGAAACCCTTAGAAACTGAGAATGTGAACCCTAATGAGTTTTCTAATCGAAACCCACTTCAGAAATCGTTGAATAAAGGTGAGAATAATTGTGTTAATGTTGTTGTTGTTTCGCCGCAGAAGAGAATTCGTCAGAGAAAGTTTGTTGTTGCAAAGAAGAAGAAGAATGATCAAAGTCCTAAGAAAACGGGTTTGTGTAAATGTGGAGAAAATAGTGATGGAACGTATCGGAGTTTGAGAGAATCACAAGAAGGGTTTTTCGAAAAAGAGAATTTTTTGGTTGATGAAGAGAAGAAAAGTGAAGAAAATGATGAAGAGAAACGTGAAAGTGTTCTTGATGAGGTTATTGAAGCAAATTTGATTATTCATGATATTGAAAGAAAAATCGATGAAGAAGAAGGCGTAGAGGAAGAAAATGAAGAAAAGGGTAATTGTAGTTCAATGGTGAAAAGGAGAAGAGAGAGAGTAATGGAAGAAGCAAGGAATAGTGTACCTGAAAATGGAAAAGTGATGCATTTGGTGAAGGCTTTTGAGAGGGAGAAAGAGAAGAATGAGGAAGAGGAAGAGGATGATAAGAAGAATAAGGTGATGAAATGGGCATTACCAGGATTGCAATTTCAACAACCTGTTAAGGATGGTGATGAACAATCTGAAGCTGTTTGTGATGATGATGGTAGTTTGTTTAATTGTACTTTGACATCTGAACAACTTGGATTGGATCAAAGGGTTTCAGTTACATCTTCTTGGGATTGTGGCAGTGGAAGAAGGAGGTGGAAGAAGAAGCAGAAGCTAAAAGTCACTAGTCAGAAACCTTTCAAGCTAAGGACTGAGCAAAGGGGAAAGATGAAAGAAGAACAATTGATGAAGAAGGTAAAAGAGATTTTGACAGAAGAAGAGAAGATGAGAATTCCTATTGCACAAGGTCTTCCATGGACTATTGATGAACCTGAGTGCTTGCTAAAACCTCCGGTGAAAGAAAGCACAAAGCCTATTGACGTGAAGCTTCATAGTGATTTGAGGGCAATTGATCGCGCTGAATTTGATCATCAGGTGGCTGAAAAATTGAGTTTGATAGAACAGCAGAAAATGGAAATGGAAAGGCAACAAAAGCTGGCTGAAGAGGAAGAAATTAGAAGATTAAGGAAGGAACTCATTCCTAAAGCGCAGCCAATGCCTTATTTTGACAGACCATTTATTCCGAGGAGGTCAATGAAGAATCCAACTATACCAAAAGAACCAAAGTTTCACATACCTCACCATAAGAAGATCAAGTGCTTGACATTAAATGAAATGAGATCATACTCTTCATAA

Protein sequence

>Msa0975810

MTPEKKKPLETENVNPNEFSNRNPLQKSLNKGENNCVNVVVVSPQKRIRQRKFVVAKKKKNDQSPKKTGLCKCGENSDGTYRSLRESQEGFFEKENFLVDEEKKSEENDEEKRESVLDEVIEANLIIHDIERKIDEEEGVEEENEEKGNCSSMVKRRRERVMEEARNSVPENGKVMHLVKAFEREKEKNEEEEEDDKKNKVMKWALPGLQFQQPVKDGDEQSEAVCDDDGSLFNCTLTSEQLGLDQRVSVTSSWDCGSGRRRWKKKQKLKVTSQKPFKLRTEQRGKMKEEQLMKKVKEILTEEEKMRIPIAQGLPWTIDEPECLLKPPVKESTKPIDVKLHSDLRAIDRAEFDHQVAEKLSLIEQQKMEMERQQKLAEEEEIRRLRKELIPKAQPMPYFDRPFIPRRSMKNPTIPKEPKFHIPHHKKIKCLTLNEMRSYSS*