Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0975810 | XP_003618715.1 | 85.361 | 485 | 23 | 6 | 1 | 441 | 1 | 481 | 0.0 | 720 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0975810 | sp|Q5XVC4|MDP60_ARATH | 46.934 | 473 | 164 | 14 | 11 | 432 | 32 | 468 | 3.12e-112 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0975810 | G7KMP3 | 85.361 | 485 | 23 | 6 | 1 | 441 | 1 | 481 | 0.0 | 720 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0975810 | 0.805070 | 1.594172e-49 | -8.615850e-47 |
| Msa0021500 | Msa0975810 | 0.803950 | 2.729459e-49 | -8.615850e-47 |
| Msa0094780 | Msa0975810 | 0.804990 | 1.656898e-49 | -8.615850e-47 |
| Msa0756590 | Msa0975810 | 0.813182 | 2.912788e-51 | -8.615850e-47 |
| Msa0795870 | Msa0975810 | 0.812877 | 3.398454e-51 | -8.615850e-47 |
| Msa0833650 | Msa0975810 | 0.814245 | 1.699519e-51 | -8.615850e-47 |
| Msa0225860 | Msa0975810 | 0.825017 | 5.893503e-54 | -8.615850e-47 |
| Msa0260510 | Msa0975810 | 0.823820 | 1.127646e-53 | -8.615850e-47 |
| Msa0298470 | Msa0975810 | 0.822016 | 2.967956e-53 | -8.615850e-47 |
| Msa0483100 | Msa0975810 | 0.800133 | 1.662697e-48 | -8.615850e-47 |
| Msa0580370 | Msa0975810 | 0.814864 | 1.239842e-51 | -8.615850e-47 |
| Msa0975750 | Msa0975810 | 0.984301 | 3.656681e-160 | -8.615850e-47 |
| Msa0975810 | Msa1132840 | 0.817523 | 3.155304e-52 | -8.615850e-47 |
| Msa0975810 | Msa1192570 | 0.819488 | 1.131220e-52 | -8.615850e-47 |
| Msa0975810 | Msa1208950 | 0.811562 | 6.580333e-51 | -8.615850e-47 |
| Msa0975810 | Msa1320670 | 0.801421 | 9.074429e-49 | -8.615850e-47 |
| Msa0975810 | Msa1397400 | 0.817822 | 2.701197e-52 | -8.615850e-47 |
| Msa0975810 | Msa1420950 | 0.825579 | 4.340261e-54 | -8.615850e-47 |
| Msa0975810 | Msa1465440 | 0.801327 | 9.485895e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0975810 | MtrunA17_Chr6g0454541 | 85.361 | 485 | 23 | 6 | 1 | 441 | 1 | 481 | 0.0 | 720 |
| Msa0975810 | MtrunA17_Chr7g0218721 | 46.653 | 478 | 164 | 13 | 8 | 441 | 23 | 453 | 1.55e-94 | 292 |
| Msa0975810 | MtrunA17_Chr3g0109961 | 49.541 | 109 | 53 | 1 | 326 | 434 | 49 | 155 | 7.28e-27 | 105 |
| Msa0975810 | MtrunA17_Chr4g0051971 | 48.571 | 105 | 52 | 1 | 326 | 430 | 9 | 111 | 4.72e-25 | 99.8 |
| Msa0975810 | MtrunA17_Chr4g0040361 | 26.415 | 212 | 96 | 4 | 270 | 422 | 518 | 728 | 3.66e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0975810 | AT5G15510.1 | 48.643 | 479 | 154 | 15 | 11 | 430 | 31 | 476 | 6.75e-121 | 361 |
| Msa0975810 | AT3G01015.1 | 46.934 | 473 | 164 | 14 | 11 | 432 | 32 | 468 | 3.17e-113 | 342 |
| Msa0975810 | AT5G15510.4 | 47.588 | 456 | 147 | 15 | 11 | 407 | 31 | 453 | 1.34e-106 | 323 |
| Msa0975810 | AT5G15510.3 | 47.588 | 456 | 147 | 15 | 11 | 407 | 31 | 453 | 1.34e-106 | 323 |
| Msa0975810 | AT5G15510.2 | 47.033 | 455 | 151 | 14 | 11 | 407 | 31 | 453 | 1.45e-105 | 323 |
| Msa0975810 | AT5G37478.4 | 54.639 | 97 | 44 | 0 | 324 | 420 | 36 | 132 | 3.78e-28 | 109 |
| Msa0975810 | AT5G37478.1 | 54.639 | 97 | 44 | 0 | 324 | 420 | 56 | 152 | 5.16e-28 | 109 |
| Msa0975810 | AT5G37478.2 | 54.639 | 97 | 44 | 0 | 324 | 420 | 23 | 119 | 8.84e-28 | 108 |
| Msa0975810 | AT1G03780.2 | 26.190 | 210 | 96 | 4 | 272 | 422 | 522 | 731 | 3.16e-13 | 72.4 |
| Msa0975810 | AT1G03780.3 | 26.190 | 210 | 96 | 4 | 272 | 422 | 522 | 731 | 3.23e-13 | 72.4 |
Find 87 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCACATTCTCAGTTTCTA+AGG | 0.217493 | 6_4:-9604906 | None:intergenic |
| TAAGGCATTGGCTGCGCTTT+AGG | 0.259331 | 6_4:-9607839 | None:intergenic |
| AATTTGATTATTCATGATAT+TGG | 0.263242 | 6_4:+9605271 | Msa0975810:CDS |
| AGAAATATTCAATTTGTATA+TGG | 0.272800 | 6_4:+9608375 | Msa0975810:three_prime_UTR |
| AGGAAGAAATTAGAAGATTA+AGG | 0.282966 | 6_4:+9607804 | Msa0975810:CDS |
| TTTCGATTAGAAAACTCATT+AGG | 0.285358 | 6_4:-9604929 | None:intergenic |
| ATGTGAAACTTTGGTTCTTT+TGG | 0.287997 | 6_4:-9608216 | None:intergenic |
| CATTACCTCCTCGGAATAAA+TGG | 0.310323 | 6_4:-9607872 | None:intergenic |
| ATAAATGGTCTGTCAAAATA+AGG | 0.316908 | 6_4:-9607857 | None:intergenic |
| AGAGGATGATAAGAAGAATA+AGG | 0.324799 | 6_4:+9605507 | Msa0975810:CDS |
| GGGTTTCAGTTACATCTTCT+TGG | 0.324833 | 6_4:+9605668 | Msa0975810:CDS |
| TCAAGCACTTGATCTTCTTA+TGG | 0.325673 | 6_4:-9608245 | None:intergenic |
| TTTGATAGAACAGCAGAAAA+TGG | 0.326431 | 6_4:+9607645 | Msa0975810:CDS |
| AGGAATAGTGTACCTGAAAA+TGG | 0.328347 | 6_4:+9605406 | Msa0975810:CDS |
| TGTTCATCACCATCCTTAAC+AGG | 0.329445 | 6_4:-9605568 | None:intergenic |
| TTCGATTAGAAAACTCATTA+GGG | 0.343147 | 6_4:-9604928 | None:intergenic |
| TCTAAGGGTTTCTTCTTCTC+TGG | 0.345090 | 6_4:-9604890 | None:intergenic |
| AGAAGAATAAGGTGATGAAA+TGG | 0.354081 | 6_4:+9605518 | Msa0975810:CDS |
| CATGGAAGACCTTGTGCAAT+AGG | 0.357245 | 6_4:-9606409 | None:intergenic |
| GCAATTTCAACAACCTGTTA+AGG | 0.359084 | 6_4:+9605555 | Msa0975810:CDS |
| CTTCAGAAATCGTTGAATAA+AGG | 0.377474 | 6_4:+9604956 | Msa0975810:CDS |
| GACATCTGAACAACTTGGAT+TGG | 0.394114 | 6_4:+9605639 | Msa0975810:CDS |
| AGAGGAAGAAAATGAAGAAA+AGG | 0.403515 | 6_4:+9605330 | Msa0975810:CDS |
| GGTTTCAGTTACATCTTCTT+GGG | 0.408587 | 6_4:+9605669 | Msa0975810:CDS |
| CTATGAAGCTTCACGTCAAT+AGG | 0.408886 | 6_4:-9607479 | None:intergenic |
| GAAGAATAAGGTGATGAAAT+GGG | 0.424705 | 6_4:+9605519 | Msa0975810:CDS |
| GGTTGTTGAAATTGCAATCC+TGG | 0.428251 | 6_4:-9605547 | None:intergenic |
| GAAAGAGAAGAATGAGGAAG+AGG | 0.431092 | 6_4:+9605483 | Msa0975810:CDS |
| GAGGAAGAAAATGAAGAAAA+GGG | 0.436113 | 6_4:+9605331 | Msa0975810:CDS |
| GGCTTTGTGCTTTCTTTCAC+CGG | 0.443138 | 6_4:-9607458 | None:intergenic |
| GAAGAATGAGGAAGAGGAAG+AGG | 0.447358 | 6_4:+9605489 | Msa0975810:CDS |
| ATTGTAGTTCAATGGTGAAA+AGG | 0.450131 | 6_4:+9605356 | Msa0975810:CDS |
| TCGCGCTGAATTTGATCATC+AGG | 0.452548 | 6_4:+9607520 | Msa0975810:CDS |
| ACCTCAGTCCTTAGCTTGAA+AGG | 0.454283 | 6_4:-9606212 | None:intergenic |
| TGATCAAAGTCCTAAGAAAA+CGG | 0.455541 | 6_4:+9605066 | Msa0975810:CDS |
| AGAACAGCAGAAAATGGAAA+TGG | 0.455873 | 6_4:+9607651 | Msa0975810:CDS |
| GATCAAAGTCCTAAGAAAAC+GGG | 0.463640 | 6_4:+9605067 | Msa0975810:CDS |
| TCTTCTTGGGATTGTGGCAG+TGG | 0.465032 | 6_4:+9605682 | Msa0975810:CDS |
| GTTACATCTTCTTGGGATTG+TGG | 0.472621 | 6_4:+9605676 | Msa0975810:CDS |
| GGGATTGTGGCAGTGGAAGA+AGG | 0.477674 | 6_4:+9605689 | Msa0975810:CDS |
| AACAACTTGGATTGGATCAA+AGG | 0.483100 | 6_4:+9605647 | Msa0975810:CDS |
| AAAGGGTAATTGTAGTTCAA+TGG | 0.483615 | 6_4:+9605348 | Msa0975810:CDS |
| AGAAATTAGAAGATTAAGGA+AGG | 0.491659 | 6_4:+9607808 | Msa0975810:CDS |
| ACAACTTGGATTGGATCAAA+GGG | 0.495261 | 6_4:+9605648 | Msa0975810:CDS |
| AAATGGAAAAGTGATGCATT+TGG | 0.498366 | 6_4:+9605423 | Msa0975810:CDS |
| GCCCTTACAGCTGGCTGAAG+AGG | 0.498637 | 6_4:+9607784 | Msa0975810:intron |
| GAAGCTTCATAGTGATTTGA+GGG | 0.499102 | 6_4:+9607490 | Msa0975810:CDS |
| TGAAGCTTCATAGTGATTTG+AGG | 0.503817 | 6_4:+9607489 | Msa0975810:CDS |
| GGAAATGGAAAGGCAACAAA+AGG | 0.506949 | 6_4:+9607666 | Msa0975810:CDS |
| CTATTGCACAAGGTCTTCCA+TGG | 0.513189 | 6_4:+9606410 | Msa0975810:CDS |
| AGAAGAACAATTGATGAAGA+AGG | 0.519315 | 6_4:+9606348 | Msa0975810:CDS |
| CTCTGACGAATTCTCTTCTG+CGG | 0.520745 | 6_4:-9605013 | None:intergenic |
| TTATTCAACGATTTCTGAAG+TGG | 0.528946 | 6_4:-9604953 | None:intergenic |
| GTCAGAAACCTTTCAAGCTA+AGG | 0.529285 | 6_4:+9606204 | Msa0975810:CDS |
| AGTGTGTTTGCGAAGCGTAT+CGG | 0.531754 | 6_4:+9605125 | Msa0975810:intron |
| AGAGAGTAATGGAAGAAGCA+AGG | 0.532326 | 6_4:+9605386 | Msa0975810:CDS |
| TGGTGAGGTATGTGAAACTT+TGG | 0.533377 | 6_4:-9608225 | None:intergenic |
| TTCACATTCTCAGTTTCTAA+GGG | 0.533557 | 6_4:-9604905 | None:intergenic |
| AAAACGGGTTTGTGTAAATG+TGG | 0.539380 | 6_4:+9605082 | Msa0975810:CDS |
| AAGGAGAAGAGAGAGAGTAA+TGG | 0.549490 | 6_4:+9605375 | Msa0975810:CDS |
| GCAGTGCTTGCTAAAACCTC+CGG | 0.554487 | 6_4:+9607439 | Msa0975810:intron |
| GTGATGAAATGGGCATTACC+AGG | 0.561341 | 6_4:+9605529 | Msa0975810:CDS |
| TTGATCAACCATTACCTCCT+CGG | 0.562441 | 6_4:-9607881 | None:intergenic |
| CACTTGATCTTCTTATGGTG+AGG | 0.566706 | 6_4:-9608240 | None:intergenic |
| ACTTTGACATCTGAACAACT+TGG | 0.567825 | 6_4:+9605634 | Msa0975810:CDS |
| TCAGGTTCATCAATAGTCCA+TGG | 0.571822 | 6_4:-9606427 | None:intergenic |
| GTTTGAGAGAATCACAAGAA+GGG | 0.574510 | 6_4:+9605149 | Msa0975810:CDS |
| AAGGGAGAAAGAGAAGAATG+AGG | 0.575728 | 6_4:+9605477 | Msa0975810:intron |
| TTTCAACAACCTGTTAAGGA+TGG | 0.578215 | 6_4:+9605559 | Msa0975810:CDS |
| GGTCTGTCAAAATAAGGCAT+TGG | 0.582294 | 6_4:-9607851 | None:intergenic |
| TATTCAACGATTTCTGAAGT+GGG | 0.582434 | 6_4:-9604952 | None:intergenic |
| ACGTGAAAGTGTTCTTGATG+AGG | 0.584228 | 6_4:+9605237 | Msa0975810:CDS |
| AGTTTGAGAGAATCACAAGA+AGG | 0.589253 | 6_4:+9605148 | Msa0975810:CDS |
| TTGACAGACCATTTATTCCG+AGG | 0.591323 | 6_4:+9607864 | Msa0975810:CDS |
| AGCAGAAAATGGAAATGGAA+AGG | 0.592553 | 6_4:+9607656 | Msa0975810:CDS |
| CGATGAAGAAGAAGGCGTAG+AGG | 0.596905 | 6_4:+9605312 | Msa0975810:CDS |
| TTTGTGCTTTCTTTCACCGG+AGG | 0.623077 | 6_4:-9607455 | None:intergenic |
| AAAAGTGATGCATTTGGTGA+AGG | 0.627407 | 6_4:+9605429 | Msa0975810:CDS |
| AAATGTGGAGAAAATAGTGA+TGG | 0.637023 | 6_4:+9605097 | Msa0975810:CDS |
| TCACATCAGCAAATGACCTG+TGG | 0.638400 | 6_4:-9608350 | None:intergenic |
| GAAGCTGTTTGTGATGATGA+TGG | 0.640877 | 6_4:+9605595 | Msa0975810:CDS |
| GAGAATGTTGATGATTCCAC+AGG | 0.646533 | 6_4:+9608334 | Msa0975810:intron |
| ACAGACCATTTATTCCGAGG+AGG | 0.649331 | 6_4:+9607867 | Msa0975810:CDS |
| ATGAGAATTCCTATTGCACA+AGG | 0.660872 | 6_4:+9606400 | Msa0975810:CDS |
| ATGGACTATTGATGAACCTG+AGG | 0.663121 | 6_4:+9606429 | Msa0975810:CDS |
| ACCTTTCAAGCTAAGGACTG+AGG | 0.672965 | 6_4:+9606211 | Msa0975810:CDS |
| ATAATGCTATTGTAGCAAAG+GGG | 0.759633 | 6_4:+9606316 | Msa0975810:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTGATTATTCATGATAT+TGG | + | chr6_4:9605271-9605290 | Msa0975810:CDS | 15.0% |
| !!! | TTTCGAAAAAGAGAATTTTT+TGG | + | chr6_4:9605174-9605193 | Msa0975810:CDS | 20.0% |
| !!! | CTCAAATTGTTATTTGTTAT+CGG | + | chr6_4:9606009-9606028 | Msa0975810:intron | 20.0% |
| !!! | TAATTGATGACACAAATAAT+TGG | + | chr6_4:9606234-9606253 | Msa0975810:intron | 20.0% |
| !!! | AATTTCTTCAAATTTTTCAG+TGG | + | chr6_4:9606271-9606290 | Msa0975810:intron | 20.0% |
| !! | TAAAATCTCATAGTCAAATT+TGG | + | chr6_4:9606501-9606520 | Msa0975810:intron | 20.0% |
| !! | TTTGATAAAGAAAAACATTG+AGG | - | chr6_4:9607217-9607236 | None:intergenic | 20.0% |
| !!! | GTTATTGATTTGAAATCAAT+TGG | - | chr6_4:9608070-9608089 | None:intergenic | 20.0% |
| !! | ACAAAAAGAGACAAAAATAA+TGG | - | chr6_4:9608149-9608168 | None:intergenic | 20.0% |
| !!! | TTTGTCTCATCATTATATTT+TGG | + | chr6_4:9608164-9608183 | Msa0975810:intron | 20.0% |
| !!! | ATCATTATATTTTGGTTTGA+AGG | + | chr6_4:9608172-9608191 | Msa0975810:intron | 20.0% |
| ! | TTCGATTAGAAAACTCATTA+GGG | - | chr6_4:9604931-9604950 | None:intergenic | 25.0% |
| ! | TTTCGATTAGAAAACTCATT+AGG | - | chr6_4:9604932-9604951 | None:intergenic | 25.0% |
| ! | AGAGGTTACTTAGTATAAAA+AGG | + | chr6_4:9605458-9605477 | Msa0975810:intron | 25.0% |
| ! | GAGGTTACTTAGTATAAAAA+GGG | + | chr6_4:9605459-9605478 | Msa0975810:intron | 25.0% |
| !!! | AAAATGCAACAAGCTTTAAA+GGG | - | chr6_4:9605745-9605764 | None:intergenic | 25.0% |
| !! | TAAAATGCAACAAGCTTTAA+AGG | - | chr6_4:9605746-9605765 | None:intergenic | 25.0% |
| !!! | GAGTTTGATTTGATTCATTT+TGG | + | chr6_4:9605769-9605788 | Msa0975810:intron | 25.0% |
| ! | CATGCCTTAATAAAAAATGT+CGG | - | chr6_4:9605940-9605959 | None:intergenic | 25.0% |
| !!! | ATTTTTTATTAAGGCATGTC+CGG | + | chr6_4:9605942-9605961 | Msa0975810:intron | 25.0% |
| ! | TCTAATTTAATCACATGTCT+CGG | - | chr6_4:9605977-9605996 | None:intergenic | 25.0% |
| !!! | AAATTTTTCAGTGGCTATAT+TGG | + | chr6_4:9606280-9606299 | Msa0975810:intron | 25.0% |
| ! | CAAAGTAAGAAAAATTACAG+TGG | + | chr6_4:9606695-9606714 | Msa0975810:intron | 25.0% |
| !! | GTAAAAACTTTTTACACTGA+CGG | + | chr6_4:9606811-9606830 | Msa0975810:intron | 25.0% |
| ! | ATGCTAGGATATTAGATATA+AGG | - | chr6_4:9606916-9606935 | None:intergenic | 25.0% |
| ! | ATGTAATGTACTGTTCTAAT+TGG | - | chr6_4:9606965-9606984 | None:intergenic | 25.0% |
| ! | GATTAACCTAACCTTATTAA+GGG | - | chr6_4:9607070-9607089 | None:intergenic | 25.0% |
| ! | AGATTAACCTAACCTTATTA+AGG | - | chr6_4:9607071-9607090 | None:intergenic | 25.0% |
| ! | TTCATCTTCATATTATGCTT+AGG | - | chr6_4:9607280-9607299 | None:intergenic | 25.0% |
| ! | TGAATCTATGATAATTCTGT+TGG | + | chr6_4:9607378-9607397 | Msa0975810:intron | 25.0% |
| ! | ACAAAAAATGCTTAGACTAA+TGG | - | chr6_4:9607418-9607437 | None:intergenic | 25.0% |
| ! | TCATGATGTGTAAAACTAAA+GGG | - | chr6_4:9607576-9607595 | None:intergenic | 25.0% |
| ! | TTCATGATGTGTAAAACTAA+AGG | - | chr6_4:9607577-9607596 | None:intergenic | 25.0% |
| !! | TTGATTTGAGATGTGAAAAT+TGG | - | chr6_4:9607703-9607722 | None:intergenic | 25.0% |
| ! | CACTTTAGATAAAAGAAACA+TGG | - | chr6_4:9607744-9607763 | None:intergenic | 25.0% |
| ! | AGGAAGAAATTAGAAGATTA+AGG | + | chr6_4:9607804-9607823 | Msa0975810:CDS | 25.0% |
| ! | AGAAATTAGAAGATTAAGGA+AGG | + | chr6_4:9607808-9607827 | Msa0975810:CDS | 25.0% |
| ! | ATAAATGGTCTGTCAAAATA+AGG | - | chr6_4:9607860-9607879 | None:intergenic | 25.0% |
| !!! | ATATAAAGTTGATTTGCGAA+AGG | + | chr6_4:9608033-9608052 | Msa0975810:intron | 25.0% |
| TTCACATTCTCAGTTTCTAA+GGG | - | chr6_4:9604908-9604927 | None:intergenic | 30.0% | |
| !! | TATTCAACGATTTCTGAAGT+GGG | - | chr6_4:9604955-9604974 | None:intergenic | 30.0% |
| ! | TTATTCAACGATTTCTGAAG+TGG | - | chr6_4:9604956-9604975 | None:intergenic | 30.0% |
| CTTCAGAAATCGTTGAATAA+AGG | + | chr6_4:9604956-9604975 | Msa0975810:CDS | 30.0% | |
| TGATCAAAGTCCTAAGAAAA+CGG | + | chr6_4:9605066-9605085 | Msa0975810:CDS | 30.0% | |
| AAATGTGGAGAAAATAGTGA+TGG | + | chr6_4:9605097-9605116 | Msa0975810:CDS | 30.0% | |
| AGAAAAATCGATGAAGAAGA+AGG | + | chr6_4:9605304-9605323 | Msa0975810:CDS | 30.0% | |
| AGAGGAAGAAAATGAAGAAA+AGG | + | chr6_4:9605330-9605349 | Msa0975810:CDS | 30.0% | |
| GAGGAAGAAAATGAAGAAAA+GGG | + | chr6_4:9605331-9605350 | Msa0975810:CDS | 30.0% | |
| AAAGGGTAATTGTAGTTCAA+TGG | + | chr6_4:9605348-9605367 | Msa0975810:CDS | 30.0% | |
| ATTGTAGTTCAATGGTGAAA+AGG | + | chr6_4:9605356-9605375 | Msa0975810:CDS | 30.0% | |
| AAATGGAAAAGTGATGCATT+TGG | + | chr6_4:9605423-9605442 | Msa0975810:CDS | 30.0% | |
| AGAGGATGATAAGAAGAATA+AGG | + | chr6_4:9605507-9605526 | Msa0975810:CDS | 30.0% | |
| AGAAGAATAAGGTGATGAAA+TGG | + | chr6_4:9605518-9605537 | Msa0975810:CDS | 30.0% | |
| GAAGAATAAGGTGATGAAAT+GGG | + | chr6_4:9605519-9605538 | Msa0975810:CDS | 30.0% | |
| !!! | AGCACCGACATTTTTTATTA+AGG | + | chr6_4:9605933-9605952 | Msa0975810:intron | 30.0% |
| AAAAACAACCTTATGAAGCA+GGG | - | chr6_4:9606088-9606107 | None:intergenic | 30.0% | |
| !!! | TTTCTGTGTTTTTTAGAGCT+TGG | + | chr6_4:9606121-9606140 | Msa0975810:intron | 30.0% |
| TTGGAATCATCTAGTACTAT+TGG | + | chr6_4:9606140-9606159 | Msa0975810:intron | 30.0% | |
| CATAATGCTATTGTAGCAAA+GGG | + | chr6_4:9606315-9606334 | Msa0975810:intron | 30.0% | |
| ATAATGCTATTGTAGCAAAG+GGG | + | chr6_4:9606316-9606335 | Msa0975810:intron | 30.0% | |
| AGAAGAACAATTGATGAAGA+AGG | + | chr6_4:9606348-9606367 | Msa0975810:CDS | 30.0% | |
| AGCATATGCACTTTAAACTA+AGG | - | chr6_4:9606478-9606497 | None:intergenic | 30.0% | |
| GTAATGTGTTAACTAAGCAT+AGG | + | chr6_4:9606547-9606566 | Msa0975810:intron | 30.0% | |
| CTATATCCATAATTGCATGA+TGG | - | chr6_4:9606617-9606636 | None:intergenic | 30.0% | |
| !! | TCATCACTGATTTAAGCTAT+TGG | - | chr6_4:9606646-9606665 | None:intergenic | 30.0% |
| CTAAAATCATACCACATGAT+GGG | - | chr6_4:9606731-9606750 | None:intergenic | 30.0% | |
| ! | TCTAAAATCATACCACATGA+TGG | - | chr6_4:9606732-9606751 | None:intergenic | 30.0% |
| ! | TCAAGACAGTGTTTTATCAT+TGG | - | chr6_4:9607094-9607113 | None:intergenic | 30.0% |
| TATCGAGTAAATTCAGTTTC+AGG | + | chr6_4:9607129-9607148 | Msa0975810:intron | 30.0% | |
| CAAATCTGTGATAATTCTGT+TGG | + | chr6_4:9607233-9607252 | Msa0975810:intron | 30.0% | |
| TCATATTATGCTTAGGCTAA+TGG | - | chr6_4:9607273-9607292 | None:intergenic | 30.0% | |
| GATTCAATCATCTTCATGTT+AGG | - | chr6_4:9607364-9607383 | None:intergenic | 30.0% | |
| CATGATGTGTAAAACTAAAG+GGG | - | chr6_4:9607575-9607594 | None:intergenic | 30.0% | |
| TTTGATAGAACAGCAGAAAA+TGG | + | chr6_4:9607645-9607664 | Msa0975810:CDS | 30.0% | |
| AATCTCATAATGAACACTCT+TGG | + | chr6_4:9607902-9607921 | Msa0975810:intron | 30.0% | |
| CATAACACAGTTATTGATCT+TGG | + | chr6_4:9607979-9607998 | Msa0975810:intron | 30.0% | |
| TCATTCGATCTCAAAATCAA+TGG | + | chr6_4:9608002-9608021 | Msa0975810:intron | 30.0% | |
| ACACACACTTTAATTGATCT+CGG | - | chr6_4:9608092-9608111 | None:intergenic | 30.0% | |
| !!! | TTTGGTTCTTTTGGTATAGT+TGG | - | chr6_4:9608210-9608229 | None:intergenic | 30.0% |
| !!! | ATGTGAAACTTTGGTTCTTT+TGG | - | chr6_4:9608219-9608238 | None:intergenic | 30.0% |
| GTTCACATTCTCAGTTTCTA+AGG | - | chr6_4:9604909-9604928 | None:intergenic | 35.0% | |
| GATCAAAGTCCTAAGAAAAC+GGG | + | chr6_4:9605067-9605086 | Msa0975810:CDS | 35.0% | |
| ! | TTACACAAACCCGTTTTCTT+AGG | - | chr6_4:9605079-9605098 | None:intergenic | 35.0% |
| ! | AAAACGGGTTTGTGTAAATG+TGG | + | chr6_4:9605082-9605101 | Msa0975810:CDS | 35.0% |
| AGTTTGAGAGAATCACAAGA+AGG | + | chr6_4:9605148-9605167 | Msa0975810:CDS | 35.0% | |
| GTTTGAGAGAATCACAAGAA+GGG | + | chr6_4:9605149-9605168 | Msa0975810:CDS | 35.0% | |
| AGGAATAGTGTACCTGAAAA+TGG | + | chr6_4:9605406-9605425 | Msa0975810:CDS | 35.0% | |
| !! | TGCATCACTTTTCCATTTTC+AGG | - | chr6_4:9605421-9605440 | None:intergenic | 35.0% |
| ! | AAAAGTGATGCATTTGGTGA+AGG | + | chr6_4:9605429-9605448 | Msa0975810:CDS | 35.0% |
| GCAATTTCAACAACCTGTTA+AGG | + | chr6_4:9605555-9605574 | Msa0975810:CDS | 35.0% | |
| TTTCAACAACCTGTTAAGGA+TGG | + | chr6_4:9605559-9605578 | Msa0975810:CDS | 35.0% | |
| ACTTTGACATCTGAACAACT+TGG | + | chr6_4:9605634-9605653 | Msa0975810:CDS | 35.0% | |
| ! | AACAACTTGGATTGGATCAA+AGG | + | chr6_4:9605647-9605666 | Msa0975810:CDS | 35.0% |
| ! | ACAACTTGGATTGGATCAAA+GGG | + | chr6_4:9605648-9605667 | Msa0975810:CDS | 35.0% |
| GGTTTCAGTTACATCTTCTT+GGG | + | chr6_4:9605669-9605688 | Msa0975810:CDS | 35.0% | |
| CAAAAACAACCTTATGAAGC+AGG | - | chr6_4:9606089-9606108 | None:intergenic | 35.0% | |
| GAATCATCTAGTACTATTGG+AGG | + | chr6_4:9606143-9606162 | Msa0975810:intron | 35.0% | |
| CCTTTGCTACAATAGCATTA+TGG | - | chr6_4:9606317-9606336 | None:intergenic | 35.0% | |
| CCATAATGCTATTGTAGCAA+AGG | + | chr6_4:9606314-9606333 | Msa0975810:intron | 35.0% | |
| ATGAGAATTCCTATTGCACA+AGG | + | chr6_4:9606400-9606419 | Msa0975810:CDS | 35.0% | |
| GATTGTCCATCATGCAATTA+TGG | + | chr6_4:9606608-9606627 | Msa0975810:intron | 35.0% | |
| !! | ATGATCATTTTTGCTCTTGC+TGG | + | chr6_4:9607032-9607051 | Msa0975810:intron | 35.0% |
| !! | TGATCATTTTTGCTCTTGCT+GGG | + | chr6_4:9607033-9607052 | Msa0975810:intron | 35.0% |
| TTGTTTGGCTACCCTTAATA+AGG | + | chr6_4:9607056-9607075 | Msa0975810:intron | 35.0% | |
| ACTCGATATCAGCTGATATA+CGG | - | chr6_4:9607117-9607136 | None:intergenic | 35.0% | |
| ATTGAGGCAAACTCAGAAAA+TGG | - | chr6_4:9607201-9607220 | None:intergenic | 35.0% | |
| AATGAAGGTTCAATGCAGTT+AGG | - | chr6_4:9607313-9607332 | None:intergenic | 35.0% | |
| AAGTTCACTAAGTCAATCTC+AGG | - | chr6_4:9607338-9607357 | None:intergenic | 35.0% | |
| !! | ATAATTCTGTTGGTAGCTTC+TGG | + | chr6_4:9607388-9607407 | Msa0975810:intron | 35.0% |
| TGAAGCTTCATAGTGATTTG+AGG | + | chr6_4:9607489-9607508 | Msa0975810:CDS | 35.0% | |
| GAAGCTTCATAGTGATTTGA+GGG | + | chr6_4:9607490-9607509 | Msa0975810:CDS | 35.0% | |
| GTAAAACTAAAGGGGAAAGA+AGG | - | chr6_4:9607567-9607586 | None:intergenic | 35.0% | |
| TGATGAATGCTTAACTGTGT+AGG | + | chr6_4:9607606-9607625 | Msa0975810:intron | 35.0% | |
| AGAACAGCAGAAAATGGAAA+TGG | + | chr6_4:9607651-9607670 | Msa0975810:CDS | 35.0% | |
| AGCAGAAAATGGAAATGGAA+AGG | + | chr6_4:9607656-9607675 | Msa0975810:CDS | 35.0% | |
| AGAAACATGGTAACTCAATC+AGG | - | chr6_4:9607731-9607750 | None:intergenic | 35.0% | |
| TATATATATGCCCTTACAGC+TGG | + | chr6_4:9607775-9607794 | Msa0975810:intron | 35.0% | |
| TCTGGCGTATTATTGAGATT+CGG | + | chr6_4:9607931-9607950 | Msa0975810:intron | 35.0% | |
| GATCAATAACTGTGTTATGC+AGG | - | chr6_4:9607978-9607997 | None:intergenic | 35.0% | |
| GATCTCAAAATCAATGGCAA+AGG | + | chr6_4:9608008-9608027 | Msa0975810:intron | 35.0% | |
| TCAAGCACTTGATCTTCTTA+TGG | - | chr6_4:9608248-9608267 | None:intergenic | 35.0% | |
| TCTAAGGGTTTCTTCTTCTC+TGG | - | chr6_4:9604893-9604912 | None:intergenic | 40.0% | |
| !! | ACGTGAAAGTGTTCTTGATG+AGG | + | chr6_4:9605237-9605256 | Msa0975810:CDS | 40.0% |
| AAGGAGAAGAGAGAGAGTAA+TGG | + | chr6_4:9605375-9605394 | Msa0975810:CDS | 40.0% | |
| ! | AGAGAGTAATGGAAGAAGCA+AGG | + | chr6_4:9605386-9605405 | Msa0975810:CDS | 40.0% |
| !! | ATTTGGTGAAGGCTTTTGAG+AGG | + | chr6_4:9605440-9605459 | Msa0975810:CDS | 40.0% |
| AAGGGAGAAAGAGAAGAATG+AGG | + | chr6_4:9605477-9605496 | Msa0975810:intron | 40.0% | |
| GAAAGAGAAGAATGAGGAAG+AGG | + | chr6_4:9605483-9605502 | Msa0975810:CDS | 40.0% | |
| GGTTGTTGAAATTGCAATCC+TGG | - | chr6_4:9605550-9605569 | None:intergenic | 40.0% | |
| TGTTCATCACCATCCTTAAC+AGG | - | chr6_4:9605571-9605590 | None:intergenic | 40.0% | |
| ! | GAAGCTGTTTGTGATGATGA+TGG | + | chr6_4:9605595-9605614 | Msa0975810:CDS | 40.0% |
| GACATCTGAACAACTTGGAT+TGG | + | chr6_4:9605639-9605658 | Msa0975810:CDS | 40.0% | |
| GGGTTTCAGTTACATCTTCT+TGG | + | chr6_4:9605668-9605687 | Msa0975810:CDS | 40.0% | |
| GTTACATCTTCTTGGGATTG+TGG | + | chr6_4:9605676-9605695 | Msa0975810:CDS | 40.0% | |
| ACAAACACAGACACAGATAC+TGG | - | chr6_4:9606063-9606082 | None:intergenic | 40.0% | |
| CATCTAGTACTATTGGAGGA+AGG | + | chr6_4:9606147-9606166 | Msa0975810:intron | 40.0% | |
| GTCAGAAACCTTTCAAGCTA+AGG | + | chr6_4:9606204-9606223 | Msa0975810:CDS | 40.0% | |
| !! | TGGCTATATTGGTGATGCAT+TGG | + | chr6_4:9606291-9606310 | Msa0975810:intron | 40.0% |
| TCAGGTTCATCAATAGTCCA+TGG | - | chr6_4:9606430-9606449 | None:intergenic | 40.0% | |
| ! | ATGGACTATTGATGAACCTG+AGG | + | chr6_4:9606429-9606448 | Msa0975810:CDS | 40.0% |
| CTATTGATGAACCTGAGGTA+AGG | + | chr6_4:9606434-9606453 | Msa0975810:intron | 40.0% | |
| TGAGAAAATGACCTTACCTC+AGG | - | chr6_4:9606448-9606467 | None:intergenic | 40.0% | |
| GATGGACAATCAGAGACTAA+TGG | - | chr6_4:9606599-9606618 | None:intergenic | 40.0% | |
| GTACTTTACAACCCATCATG+TGG | + | chr6_4:9606717-9606736 | Msa0975810:intron | 40.0% | |
| TCCTAGCATTACACATGACA+AGG | + | chr6_4:9606927-9606946 | Msa0975810:intron | 40.0% | |
| TCCTTGTCATGTGTAATGCT+AGG | - | chr6_4:9606931-9606950 | None:intergenic | 40.0% | |
| TGGCTACCCTTAATAAGGTT+AGG | + | chr6_4:9607061-9607080 | Msa0975810:intron | 40.0% | |
| AGTCAATCTCAGGCTAATGA+AGG | - | chr6_4:9607328-9607347 | None:intergenic | 40.0% | |
| CTATGAAGCTTCACGTCAAT+AGG | - | chr6_4:9607482-9607501 | None:intergenic | 40.0% | |
| GCTGAATTTGATCATCAGGT+AGG | + | chr6_4:9607524-9607543 | Msa0975810:intron | 40.0% | |
| TGAATGCTTAACTGTGTAGG+TGG | + | chr6_4:9607609-9607628 | Msa0975810:intron | 40.0% | |
| GGAAATGGAAAGGCAACAAA+AGG | + | chr6_4:9607666-9607685 | Msa0975810:CDS | 40.0% | |
| GGTCTGTCAAAATAAGGCAT+TGG | - | chr6_4:9607854-9607873 | None:intergenic | 40.0% | |
| TTGACAGACCATTTATTCCG+AGG | + | chr6_4:9607864-9607883 | Msa0975810:CDS | 40.0% | |
| CATTACCTCCTCGGAATAAA+TGG | - | chr6_4:9607875-9607894 | None:intergenic | 40.0% | |
| CATTTATTCCGAGGAGGTAA+TGG | + | chr6_4:9607873-9607892 | Msa0975810:intron | 40.0% | |
| TTGATCAACCATTACCTCCT+CGG | - | chr6_4:9607884-9607903 | None:intergenic | 40.0% | |
| ! | GAACACTCTTGGAAGTTTTC+TGG | + | chr6_4:9607913-9607932 | Msa0975810:intron | 40.0% |
| TGGTGAGGTATGTGAAACTT+TGG | - | chr6_4:9608228-9608247 | None:intergenic | 40.0% | |
| CACTTGATCTTCTTATGGTG+AGG | - | chr6_4:9608243-9608262 | None:intergenic | 40.0% | |
| CTTCAACTGAGAGAATTCAG+AGG | + | chr6_4:9608299-9608318 | Msa0975810:intron | 40.0% | |
| !! | GAGAATGTTGATGATTCCAC+AGG | + | chr6_4:9608334-9608353 | Msa0975810:intron | 40.0% |
| CTCTGACGAATTCTCTTCTG+CGG | - | chr6_4:9605016-9605035 | None:intergenic | 45.0% | |
| AGTGTGTTTGCGAAGCGTAT+CGG | + | chr6_4:9605125-9605144 | Msa0975810:intron | 45.0% | |
| GAAGAATGAGGAAGAGGAAG+AGG | + | chr6_4:9605489-9605508 | Msa0975810:CDS | 45.0% | |
| GTGATGAAATGGGCATTACC+AGG | + | chr6_4:9605529-9605548 | Msa0975810:CDS | 45.0% | |
| GTGTGTAGCAGGAATTCTTC+TGG | + | chr6_4:9605843-9605862 | Msa0975810:intron | 45.0% | |
| TGTAGCAGGAATTCTTCTGG+TGG | + | chr6_4:9605846-9605865 | Msa0975810:intron | 45.0% | |
| GTTTGTGTCCCTGCTTCATA+AGG | + | chr6_4:9606077-9606096 | Msa0975810:intron | 45.0% | |
| CTAGTACTATTGGAGGAAGG+AGG | + | chr6_4:9606150-9606169 | Msa0975810:intron | 45.0% | |
| ACCTTTCAAGCTAAGGACTG+AGG | + | chr6_4:9606211-9606230 | Msa0975810:CDS | 45.0% | |
| ! | ACCTCAGTCCTTAGCTTGAA+AGG | - | chr6_4:9606215-9606234 | None:intergenic | 45.0% |
| CATGGAAGACCTTGTGCAAT+AGG | - | chr6_4:9606412-9606431 | None:intergenic | 45.0% | |
| CTATTGCACAAGGTCTTCCA+TGG | + | chr6_4:9606410-9606429 | Msa0975810:CDS | 45.0% | |
| TTTGCTCTTGCTGGGTTGTT+TGG | + | chr6_4:9607041-9607060 | Msa0975810:intron | 45.0% | |
| TTTGTGCTTTCTTTCACCGG+AGG | - | chr6_4:9607458-9607477 | None:intergenic | 45.0% | |
| ! | GGCTTTGTGCTTTCTTTCAC+CGG | - | chr6_4:9607461-9607480 | None:intergenic | 45.0% |
| TCGCGCTGAATTTGATCATC+AGG | + | chr6_4:9607520-9607539 | Msa0975810:CDS | 45.0% | |
| ACAGACCATTTATTCCGAGG+AGG | + | chr6_4:9607867-9607886 | Msa0975810:CDS | 45.0% | |
| ! | ACGTGCATTTTGCACTGTTG+TGG | + | chr6_4:9608115-9608134 | Msa0975810:intron | 45.0% |
| TCACATCAGCAAATGACCTG+TGG | - | chr6_4:9608353-9608372 | None:intergenic | 45.0% | |
| ! | CGATGAAGAAGAAGGCGTAG+AGG | + | chr6_4:9605312-9605331 | Msa0975810:CDS | 50.0% |
| TCTTCTTGGGATTGTGGCAG+TGG | + | chr6_4:9605682-9605701 | Msa0975810:CDS | 50.0% | |
| TCTTGTGCAGTGTGTGTAGC+AGG | + | chr6_4:9605832-9605851 | Msa0975810:intron | 50.0% | |
| GTACTATTGGAGGAAGGAGG+TGG | + | chr6_4:9606153-9606172 | Msa0975810:intron | 50.0% | |
| ! | GCAGTGCTTGCTAAAACCTC+CGG | + | chr6_4:9607439-9607458 | Msa0975810:intron | 50.0% |
| TCCTCTTCAGCCAGCTGTAA+GGG | - | chr6_4:9607788-9607807 | None:intergenic | 50.0% | |
| TTCCTCTTCAGCCAGCTGTA+AGG | - | chr6_4:9607789-9607808 | None:intergenic | 50.0% | |
| !! | TAAGGCATTGGCTGCGCTTT+AGG | - | chr6_4:9607842-9607861 | None:intergenic | 50.0% |
| GGGATTGTGGCAGTGGAAGA+AGG | + | chr6_4:9605689-9605708 | Msa0975810:CDS | 55.0% | |
| !! | CATGTCTCGGTGTCAGACAC+CGG | - | chr6_4:9605964-9605983 | None:intergenic | 55.0% |
| GCCCTTACAGCTGGCTGAAG+AGG | + | chr6_4:9607784-9607803 | Msa0975810:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 9604884 | 9608396 | 9604884 | ID=Msa0975810;Name=Msa0975810 |
| chr6_4 | mRNA | 9604884 | 9608396 | 9604884 | ID=Msa0975810-mRNA-1;Parent=Msa0975810;Name=Msa0975810-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.6|0.54|1|0.4|0.27|11|58|441 |
| chr6_4 | exon | 9604884 | 9605121 | 9604884 | ID=Msa0975810-mRNA-1:exon:3495;Parent=Msa0975810-mRNA-1 |
| chr6_4 | exon | 9605140 | 9605292 | 9605140 | ID=Msa0975810-mRNA-1:exon:3496;Parent=Msa0975810-mRNA-1 |
| chr6_4 | exon | 9605302 | 9605461 | 9605302 | ID=Msa0975810-mRNA-1:exon:3497;Parent=Msa0975810-mRNA-1 |
| chr6_4 | exon | 9605480 | 9605710 | 9605480 | ID=Msa0975810-mRNA-1:exon:3498;Parent=Msa0975810-mRNA-1 |
| chr6_4 | exon | 9606169 | 9606232 | 9606169 | ID=Msa0975810-mRNA-1:exon:3499;Parent=Msa0975810-mRNA-1 |
| chr6_4 | exon | 9606331 | 9606450 | 9606331 | ID=Msa0975810-mRNA-1:exon:3500;Parent=Msa0975810-mRNA-1 |
| chr6_4 | exon | 9607443 | 9607541 | 9607443 | ID=Msa0975810-mRNA-1:exon:3501;Parent=Msa0975810-mRNA-1 |
| chr6_4 | exon | 9607628 | 9607687 | 9607628 | ID=Msa0975810-mRNA-1:exon:3502;Parent=Msa0975810-mRNA-1 |
| chr6_4 | exon | 9607794 | 9607888 | 9607794 | ID=Msa0975810-mRNA-1:exon:3503;Parent=Msa0975810-mRNA-1 |
| chr6_4 | exon | 9608194 | 9608297 | 9608194 | ID=Msa0975810-mRNA-1:exon:3504;Parent=Msa0975810-mRNA-1 |
| chr6_4 | exon | 9608337 | 9608396 | 9608337 | ID=Msa0975810-mRNA-1:exon:3505;Parent=Msa0975810-mRNA-1 |
| chr6_4 | CDS | 9604884 | 9605121 | 9604884 | ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1 |
| chr6_4 | CDS | 9605140 | 9605292 | 9605140 | ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1 |
| chr6_4 | CDS | 9605302 | 9605461 | 9605302 | ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1 |
| chr6_4 | CDS | 9605480 | 9605710 | 9605480 | ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1 |
| chr6_4 | CDS | 9606169 | 9606232 | 9606169 | ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1 |
| chr6_4 | CDS | 9606331 | 9606450 | 9606331 | ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1 |
| chr6_4 | CDS | 9607443 | 9607541 | 9607443 | ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1 |
| chr6_4 | CDS | 9607628 | 9607687 | 9607628 | ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1 |
| chr6_4 | CDS | 9607794 | 9607888 | 9607794 | ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1 |
| chr6_4 | CDS | 9608194 | 9608297 | 9608194 | ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1 |
| chr6_4 | CDS | 9608337 | 9608338 | 9608337 | ID=Msa0975810-mRNA-1:cds;Parent=Msa0975810-mRNA-1 |
| chr6_4 | three_prime_UTR | 9608339 | 9608396 | 9608339 | ID=Msa0975810-mRNA-1:three_prime_utr;Parent=Msa0975810-mRNA-1 |
| Gene Sequence |
| Protein sequence |