Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0975750 | XP_003618715.1 | 85.361 | 485 | 23 | 6 | 1 | 441 | 1 | 481 | 0.0 | 720 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0975750 | sp|Q5XVC4|MDP60_ARATH | 46.934 | 473 | 164 | 14 | 11 | 432 | 32 | 468 | 3.12e-112 | 342 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0975750 | G7KMP3 | 85.361 | 485 | 23 | 6 | 1 | 441 | 1 | 481 | 0.0 | 720 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0005890 | Msa0975750 | 0.814975 | 1.171311e-51 | -8.615850e-47 |
Msa0021500 | Msa0975750 | 0.814580 | 1.433065e-51 | -8.615850e-47 |
Msa0094780 | Msa0975750 | 0.815188 | 1.050599e-51 | -8.615850e-47 |
Msa0624900 | Msa0975750 | 0.801620 | 8.262973e-49 | -8.615850e-47 |
Msa0756590 | Msa0975750 | 0.816877 | 4.408510e-52 | -8.615850e-47 |
Msa0795870 | Msa0975750 | 0.825306 | 5.037210e-54 | -8.615850e-47 |
Msa0824450 | Msa0975750 | 0.803041 | 4.213138e-49 | -8.615850e-47 |
Msa0833650 | Msa0975750 | 0.826160 | 3.159246e-54 | -8.615850e-47 |
Msa0225860 | Msa0975750 | 0.835000 | 2.164509e-56 | -8.615850e-47 |
Msa0260510 | Msa0975750 | 0.828928 | 6.842664e-55 | -8.615850e-47 |
Msa0298470 | Msa0975750 | 0.825785 | 3.877825e-54 | -8.615850e-47 |
Msa0302170 | Msa0975750 | 0.806142 | 9.496880e-50 | -8.615850e-47 |
Msa0330380 | Msa0975750 | 0.800014 | 1.758095e-48 | -8.615850e-47 |
Msa0340500 | Msa0975750 | 0.802643 | 5.089040e-49 | -8.615850e-47 |
Msa0483100 | Msa0975750 | 0.814940 | 1.192514e-51 | -8.615850e-47 |
Msa0580370 | Msa0975750 | 0.824592 | 7.426329e-54 | -8.615850e-47 |
Msa0975750 | Msa0975810 | 0.984301 | 3.656681e-160 | -8.615850e-47 |
Msa0975750 | Msa1132840 | 0.828401 | 9.177175e-55 | -8.615850e-47 |
Msa0975750 | Msa1186020 | 0.813668 | 2.278619e-51 | -8.615850e-47 |
Msa0975750 | Msa1192570 | 0.823511 | 1.331933e-53 | -8.615850e-47 |
Msa0975750 | Msa1208950 | 0.819454 | 1.151402e-52 | -8.615850e-47 |
Msa0975750 | Msa1320670 | 0.818379 | 2.021322e-52 | -8.615850e-47 |
Msa0975750 | Msa1397400 | 0.826698 | 2.352431e-54 | -8.615850e-47 |
Msa0975750 | Msa1420950 | 0.828840 | 7.188521e-55 | -8.615850e-47 |
Msa0975750 | Msa1454140 | 0.806269 | 8.928154e-50 | -8.615850e-47 |
Msa0975750 | Msa1465440 | 0.812776 | 3.575171e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0975750 | MtrunA17_Chr6g0454541 | 85.361 | 485 | 23 | 6 | 1 | 441 | 1 | 481 | 0.0 | 720 |
Msa0975750 | MtrunA17_Chr7g0218721 | 46.653 | 478 | 164 | 13 | 8 | 441 | 23 | 453 | 1.55e-94 | 292 |
Msa0975750 | MtrunA17_Chr3g0109961 | 49.541 | 109 | 53 | 1 | 326 | 434 | 49 | 155 | 7.28e-27 | 105 |
Msa0975750 | MtrunA17_Chr4g0051971 | 48.571 | 105 | 52 | 1 | 326 | 430 | 9 | 111 | 4.72e-25 | 99.8 |
Msa0975750 | MtrunA17_Chr4g0040361 | 26.415 | 212 | 96 | 4 | 270 | 422 | 518 | 728 | 3.66e-13 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0975750 | AT5G15510.1 | 48.643 | 479 | 154 | 15 | 11 | 430 | 31 | 476 | 6.75e-121 | 361 |
Msa0975750 | AT3G01015.1 | 46.934 | 473 | 164 | 14 | 11 | 432 | 32 | 468 | 3.17e-113 | 342 |
Msa0975750 | AT5G15510.4 | 47.588 | 456 | 147 | 15 | 11 | 407 | 31 | 453 | 1.34e-106 | 323 |
Msa0975750 | AT5G15510.3 | 47.588 | 456 | 147 | 15 | 11 | 407 | 31 | 453 | 1.34e-106 | 323 |
Msa0975750 | AT5G15510.2 | 47.033 | 455 | 151 | 14 | 11 | 407 | 31 | 453 | 1.45e-105 | 323 |
Msa0975750 | AT5G37478.4 | 54.639 | 97 | 44 | 0 | 324 | 420 | 36 | 132 | 3.78e-28 | 109 |
Msa0975750 | AT5G37478.1 | 54.639 | 97 | 44 | 0 | 324 | 420 | 56 | 152 | 5.16e-28 | 109 |
Msa0975750 | AT5G37478.2 | 54.639 | 97 | 44 | 0 | 324 | 420 | 23 | 119 | 8.84e-28 | 108 |
Msa0975750 | AT1G03780.2 | 26.190 | 210 | 96 | 4 | 272 | 422 | 522 | 731 | 3.16e-13 | 72.4 |
Msa0975750 | AT1G03780.3 | 26.190 | 210 | 96 | 4 | 272 | 422 | 522 | 731 | 3.23e-13 | 72.4 |
Find 87 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTCACATTCTCAGTTTCTA+AGG | 0.217493 | 6_4:-9551578 | None:intergenic |
TAAGGCATTGGCTGCGCTTT+AGG | 0.259331 | 6_4:-9554511 | None:intergenic |
AATTTGATTATTCATGATAT+TGG | 0.263242 | 6_4:+9551943 | Msa0975750:CDS |
AGAAATATTCAATTTGTATA+TGG | 0.272800 | 6_4:+9555047 | Msa0975750:three_prime_UTR |
AGGAAGAAATTAGAAGATTA+AGG | 0.282966 | 6_4:+9554476 | Msa0975750:CDS |
TTTCGATTAGAAAACTCATT+AGG | 0.285358 | 6_4:-9551601 | None:intergenic |
ATGTGAAACTTTGGTTCTTT+TGG | 0.287997 | 6_4:-9554888 | None:intergenic |
CATTACCTCCTCGGAATAAA+TGG | 0.310323 | 6_4:-9554544 | None:intergenic |
ATAAATGGTCTGTCAAAATA+AGG | 0.316908 | 6_4:-9554529 | None:intergenic |
AGAGGATGATAAGAAGAATA+AGG | 0.324799 | 6_4:+9552179 | Msa0975750:CDS |
GGGTTTCAGTTACATCTTCT+TGG | 0.324833 | 6_4:+9552340 | Msa0975750:CDS |
TCAAGCACTTGATCTTCTTA+TGG | 0.325673 | 6_4:-9554917 | None:intergenic |
TTTGATAGAACAGCAGAAAA+TGG | 0.326431 | 6_4:+9554317 | Msa0975750:CDS |
AGGAATAGTGTACCTGAAAA+TGG | 0.328347 | 6_4:+9552078 | Msa0975750:CDS |
TGTTCATCACCATCCTTAAC+AGG | 0.329445 | 6_4:-9552240 | None:intergenic |
TTCGATTAGAAAACTCATTA+GGG | 0.343147 | 6_4:-9551600 | None:intergenic |
TCTAAGGGTTTCTTCTTCTC+TGG | 0.345090 | 6_4:-9551562 | None:intergenic |
AGAAGAATAAGGTGATGAAA+TGG | 0.354081 | 6_4:+9552190 | Msa0975750:CDS |
CATGGAAGACCTTGTGCAAT+AGG | 0.357245 | 6_4:-9553081 | None:intergenic |
GCAATTTCAACAACCTGTTA+AGG | 0.359084 | 6_4:+9552227 | Msa0975750:CDS |
CTTCAGAAATCGTTGAATAA+AGG | 0.377474 | 6_4:+9551628 | Msa0975750:CDS |
GACATCTGAACAACTTGGAT+TGG | 0.394114 | 6_4:+9552311 | Msa0975750:CDS |
AGAGGAAGAAAATGAAGAAA+AGG | 0.403515 | 6_4:+9552002 | Msa0975750:CDS |
GGTTTCAGTTACATCTTCTT+GGG | 0.408587 | 6_4:+9552341 | Msa0975750:CDS |
CTATGAAGCTTCACGTCAAT+AGG | 0.408886 | 6_4:-9554151 | None:intergenic |
GAAGAATAAGGTGATGAAAT+GGG | 0.424705 | 6_4:+9552191 | Msa0975750:CDS |
GGTTGTTGAAATTGCAATCC+TGG | 0.428251 | 6_4:-9552219 | None:intergenic |
GAAAGAGAAGAATGAGGAAG+AGG | 0.431092 | 6_4:+9552155 | Msa0975750:CDS |
GAGGAAGAAAATGAAGAAAA+GGG | 0.436113 | 6_4:+9552003 | Msa0975750:CDS |
GGCTTTGTGCTTTCTTTCAC+CGG | 0.443138 | 6_4:-9554130 | None:intergenic |
GAAGAATGAGGAAGAGGAAG+AGG | 0.447358 | 6_4:+9552161 | Msa0975750:CDS |
ATTGTAGTTCAATGGTGAAA+AGG | 0.450131 | 6_4:+9552028 | Msa0975750:CDS |
TCGCGCTGAATTTGATCATC+AGG | 0.452548 | 6_4:+9554192 | Msa0975750:CDS |
ACCTCAGTCCTTAGCTTGAA+AGG | 0.454283 | 6_4:-9552884 | None:intergenic |
TGATCAAAGTCCTAAGAAAA+CGG | 0.455541 | 6_4:+9551738 | Msa0975750:CDS |
AGAACAGCAGAAAATGGAAA+TGG | 0.455873 | 6_4:+9554323 | Msa0975750:CDS |
GATCAAAGTCCTAAGAAAAC+GGG | 0.463640 | 6_4:+9551739 | Msa0975750:CDS |
TCTTCTTGGGATTGTGGCAG+TGG | 0.465032 | 6_4:+9552354 | Msa0975750:CDS |
GTTACATCTTCTTGGGATTG+TGG | 0.472621 | 6_4:+9552348 | Msa0975750:CDS |
GGGATTGTGGCAGTGGAAGA+AGG | 0.477674 | 6_4:+9552361 | Msa0975750:CDS |
AACAACTTGGATTGGATCAA+AGG | 0.483100 | 6_4:+9552319 | Msa0975750:CDS |
AAAGGGTAATTGTAGTTCAA+TGG | 0.483615 | 6_4:+9552020 | Msa0975750:CDS |
AGAAATTAGAAGATTAAGGA+AGG | 0.491659 | 6_4:+9554480 | Msa0975750:CDS |
ACAACTTGGATTGGATCAAA+GGG | 0.495261 | 6_4:+9552320 | Msa0975750:CDS |
AAATGGAAAAGTGATGCATT+TGG | 0.498366 | 6_4:+9552095 | Msa0975750:CDS |
GCCCTTACAGCTGGCTGAAG+AGG | 0.498637 | 6_4:+9554456 | Msa0975750:intron |
GAAGCTTCATAGTGATTTGA+GGG | 0.499102 | 6_4:+9554162 | Msa0975750:CDS |
TGAAGCTTCATAGTGATTTG+AGG | 0.503817 | 6_4:+9554161 | Msa0975750:CDS |
GGAAATGGAAAGGCAACAAA+AGG | 0.506949 | 6_4:+9554338 | Msa0975750:CDS |
CTATTGCACAAGGTCTTCCA+TGG | 0.513189 | 6_4:+9553082 | Msa0975750:CDS |
AGAAGAACAATTGATGAAGA+AGG | 0.519315 | 6_4:+9553020 | Msa0975750:CDS |
CTCTGACGAATTCTCTTCTG+CGG | 0.520745 | 6_4:-9551685 | None:intergenic |
TTATTCAACGATTTCTGAAG+TGG | 0.528946 | 6_4:-9551625 | None:intergenic |
GTCAGAAACCTTTCAAGCTA+AGG | 0.529285 | 6_4:+9552876 | Msa0975750:CDS |
AGTGTGTTTGCGAAGCGTAT+CGG | 0.531754 | 6_4:+9551797 | Msa0975750:intron |
AGAGAGTAATGGAAGAAGCA+AGG | 0.532326 | 6_4:+9552058 | Msa0975750:CDS |
TGGTGAGGTATGTGAAACTT+TGG | 0.533377 | 6_4:-9554897 | None:intergenic |
TTCACATTCTCAGTTTCTAA+GGG | 0.533557 | 6_4:-9551577 | None:intergenic |
AAAACGGGTTTGTGTAAATG+TGG | 0.539380 | 6_4:+9551754 | Msa0975750:CDS |
AAGGAGAAGAGAGAGAGTAA+TGG | 0.549490 | 6_4:+9552047 | Msa0975750:CDS |
GCAGTGCTTGCTAAAACCTC+CGG | 0.554487 | 6_4:+9554111 | Msa0975750:intron |
GTGATGAAATGGGCATTACC+AGG | 0.561341 | 6_4:+9552201 | Msa0975750:CDS |
TTGATCAACCATTACCTCCT+CGG | 0.562441 | 6_4:-9554553 | None:intergenic |
CACTTGATCTTCTTATGGTG+AGG | 0.566706 | 6_4:-9554912 | None:intergenic |
ACTTTGACATCTGAACAACT+TGG | 0.567825 | 6_4:+9552306 | Msa0975750:CDS |
TCAGGTTCATCAATAGTCCA+TGG | 0.571822 | 6_4:-9553099 | None:intergenic |
GTTTGAGAGAATCACAAGAA+GGG | 0.574510 | 6_4:+9551821 | Msa0975750:CDS |
AAGGGAGAAAGAGAAGAATG+AGG | 0.575728 | 6_4:+9552149 | Msa0975750:intron |
TTTCAACAACCTGTTAAGGA+TGG | 0.578215 | 6_4:+9552231 | Msa0975750:CDS |
GGTCTGTCAAAATAAGGCAT+TGG | 0.582294 | 6_4:-9554523 | None:intergenic |
TATTCAACGATTTCTGAAGT+GGG | 0.582434 | 6_4:-9551624 | None:intergenic |
ACGTGAAAGTGTTCTTGATG+AGG | 0.584228 | 6_4:+9551909 | Msa0975750:CDS |
AGTTTGAGAGAATCACAAGA+AGG | 0.589253 | 6_4:+9551820 | Msa0975750:CDS |
TTGACAGACCATTTATTCCG+AGG | 0.591323 | 6_4:+9554536 | Msa0975750:CDS |
AGCAGAAAATGGAAATGGAA+AGG | 0.592553 | 6_4:+9554328 | Msa0975750:CDS |
CGATGAAGAAGAAGGCGTAG+AGG | 0.596905 | 6_4:+9551984 | Msa0975750:CDS |
TTTGTGCTTTCTTTCACCGG+AGG | 0.623077 | 6_4:-9554127 | None:intergenic |
AAAAGTGATGCATTTGGTGA+AGG | 0.627407 | 6_4:+9552101 | Msa0975750:CDS |
AAATGTGGAGAAAATAGTGA+TGG | 0.637023 | 6_4:+9551769 | Msa0975750:CDS |
TCACATCAGCAAATGACCTG+TGG | 0.638400 | 6_4:-9555022 | None:intergenic |
GAAGCTGTTTGTGATGATGA+TGG | 0.640877 | 6_4:+9552267 | Msa0975750:CDS |
GAGAATGTTGATGATTCCAC+AGG | 0.646533 | 6_4:+9555006 | Msa0975750:intron |
ACAGACCATTTATTCCGAGG+AGG | 0.649331 | 6_4:+9554539 | Msa0975750:CDS |
ATGAGAATTCCTATTGCACA+AGG | 0.660872 | 6_4:+9553072 | Msa0975750:CDS |
ATGGACTATTGATGAACCTG+AGG | 0.663121 | 6_4:+9553101 | Msa0975750:CDS |
ACCTTTCAAGCTAAGGACTG+AGG | 0.672965 | 6_4:+9552883 | Msa0975750:CDS |
ATAATGCTATTGTAGCAAAG+GGG | 0.759633 | 6_4:+9552988 | Msa0975750:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTGATTATTCATGATAT+TGG | + | chr6_4:9551943-9551962 | Msa0975750:CDS | 15.0% |
!!! | TTTCGAAAAAGAGAATTTTT+TGG | + | chr6_4:9551846-9551865 | Msa0975750:CDS | 20.0% |
!!! | CTCAAATTGTTATTTGTTAT+CGG | + | chr6_4:9552681-9552700 | Msa0975750:intron | 20.0% |
!!! | TAATTGATGACACAAATAAT+TGG | + | chr6_4:9552906-9552925 | Msa0975750:intron | 20.0% |
!!! | AATTTCTTCAAATTTTTCAG+TGG | + | chr6_4:9552943-9552962 | Msa0975750:intron | 20.0% |
!! | TAAAATCTCATAGTCAAATT+TGG | + | chr6_4:9553173-9553192 | Msa0975750:intron | 20.0% |
!! | TTTGATAAAGAAAAACATTG+AGG | - | chr6_4:9553889-9553908 | None:intergenic | 20.0% |
!!! | GTTATTGATTTGAAATCAAT+TGG | - | chr6_4:9554742-9554761 | None:intergenic | 20.0% |
!! | ACAAAAAGAGACAAAAATAA+TGG | - | chr6_4:9554821-9554840 | None:intergenic | 20.0% |
!!! | TTTGTCTCATCATTATATTT+TGG | + | chr6_4:9554836-9554855 | Msa0975750:intron | 20.0% |
!!! | ATCATTATATTTTGGTTTGA+AGG | + | chr6_4:9554844-9554863 | Msa0975750:intron | 20.0% |
! | TTCGATTAGAAAACTCATTA+GGG | - | chr6_4:9551603-9551622 | None:intergenic | 25.0% |
! | TTTCGATTAGAAAACTCATT+AGG | - | chr6_4:9551604-9551623 | None:intergenic | 25.0% |
! | AGAGGTTACTTAGTATAAAA+AGG | + | chr6_4:9552130-9552149 | Msa0975750:intron | 25.0% |
! | GAGGTTACTTAGTATAAAAA+GGG | + | chr6_4:9552131-9552150 | Msa0975750:intron | 25.0% |
!!! | AAAATGCAACAAGCTTTAAA+GGG | - | chr6_4:9552417-9552436 | None:intergenic | 25.0% |
!! | TAAAATGCAACAAGCTTTAA+AGG | - | chr6_4:9552418-9552437 | None:intergenic | 25.0% |
!!! | GAGTTTGATTTGATTCATTT+TGG | + | chr6_4:9552441-9552460 | Msa0975750:intron | 25.0% |
! | CATGCCTTAATAAAAAATGT+CGG | - | chr6_4:9552612-9552631 | None:intergenic | 25.0% |
!!! | ATTTTTTATTAAGGCATGTC+CGG | + | chr6_4:9552614-9552633 | Msa0975750:intron | 25.0% |
! | TCTAATTTAATCACATGTCT+CGG | - | chr6_4:9552649-9552668 | None:intergenic | 25.0% |
!!! | AAATTTTTCAGTGGCTATAT+TGG | + | chr6_4:9552952-9552971 | Msa0975750:intron | 25.0% |
! | CAAAGTAAGAAAAATTACAG+TGG | + | chr6_4:9553367-9553386 | Msa0975750:intron | 25.0% |
!! | GTAAAAACTTTTTACACTGA+CGG | + | chr6_4:9553483-9553502 | Msa0975750:intron | 25.0% |
! | ATGCTAGGATATTAGATATA+AGG | - | chr6_4:9553588-9553607 | None:intergenic | 25.0% |
! | ATGTAATGTACTGTTCTAAT+TGG | - | chr6_4:9553637-9553656 | None:intergenic | 25.0% |
! | GATTAACCTAACCTTATTAA+GGG | - | chr6_4:9553742-9553761 | None:intergenic | 25.0% |
! | AGATTAACCTAACCTTATTA+AGG | - | chr6_4:9553743-9553762 | None:intergenic | 25.0% |
! | TTCATCTTCATATTATGCTT+AGG | - | chr6_4:9553952-9553971 | None:intergenic | 25.0% |
! | TGAATCTATGATAATTCTGT+TGG | + | chr6_4:9554050-9554069 | Msa0975750:intron | 25.0% |
! | ACAAAAAATGCTTAGACTAA+TGG | - | chr6_4:9554090-9554109 | None:intergenic | 25.0% |
! | TCATGATGTGTAAAACTAAA+GGG | - | chr6_4:9554248-9554267 | None:intergenic | 25.0% |
! | TTCATGATGTGTAAAACTAA+AGG | - | chr6_4:9554249-9554268 | None:intergenic | 25.0% |
!! | TTGATTTGAGATGTGAAAAT+TGG | - | chr6_4:9554375-9554394 | None:intergenic | 25.0% |
! | CACTTTAGATAAAAGAAACA+TGG | - | chr6_4:9554416-9554435 | None:intergenic | 25.0% |
! | AGGAAGAAATTAGAAGATTA+AGG | + | chr6_4:9554476-9554495 | Msa0975750:CDS | 25.0% |
! | AGAAATTAGAAGATTAAGGA+AGG | + | chr6_4:9554480-9554499 | Msa0975750:CDS | 25.0% |
! | ATAAATGGTCTGTCAAAATA+AGG | - | chr6_4:9554532-9554551 | None:intergenic | 25.0% |
!!! | ATATAAAGTTGATTTGCGAA+AGG | + | chr6_4:9554705-9554724 | Msa0975750:intron | 25.0% |
TTCACATTCTCAGTTTCTAA+GGG | - | chr6_4:9551580-9551599 | None:intergenic | 30.0% | |
!! | TATTCAACGATTTCTGAAGT+GGG | - | chr6_4:9551627-9551646 | None:intergenic | 30.0% |
! | TTATTCAACGATTTCTGAAG+TGG | - | chr6_4:9551628-9551647 | None:intergenic | 30.0% |
CTTCAGAAATCGTTGAATAA+AGG | + | chr6_4:9551628-9551647 | Msa0975750:CDS | 30.0% | |
TGATCAAAGTCCTAAGAAAA+CGG | + | chr6_4:9551738-9551757 | Msa0975750:CDS | 30.0% | |
AAATGTGGAGAAAATAGTGA+TGG | + | chr6_4:9551769-9551788 | Msa0975750:CDS | 30.0% | |
AGAAAAATCGATGAAGAAGA+AGG | + | chr6_4:9551976-9551995 | Msa0975750:CDS | 30.0% | |
AGAGGAAGAAAATGAAGAAA+AGG | + | chr6_4:9552002-9552021 | Msa0975750:CDS | 30.0% | |
GAGGAAGAAAATGAAGAAAA+GGG | + | chr6_4:9552003-9552022 | Msa0975750:CDS | 30.0% | |
AAAGGGTAATTGTAGTTCAA+TGG | + | chr6_4:9552020-9552039 | Msa0975750:CDS | 30.0% | |
ATTGTAGTTCAATGGTGAAA+AGG | + | chr6_4:9552028-9552047 | Msa0975750:CDS | 30.0% | |
AAATGGAAAAGTGATGCATT+TGG | + | chr6_4:9552095-9552114 | Msa0975750:CDS | 30.0% | |
AGAGGATGATAAGAAGAATA+AGG | + | chr6_4:9552179-9552198 | Msa0975750:CDS | 30.0% | |
AGAAGAATAAGGTGATGAAA+TGG | + | chr6_4:9552190-9552209 | Msa0975750:CDS | 30.0% | |
GAAGAATAAGGTGATGAAAT+GGG | + | chr6_4:9552191-9552210 | Msa0975750:CDS | 30.0% | |
!!! | AGCACCGACATTTTTTATTA+AGG | + | chr6_4:9552605-9552624 | Msa0975750:intron | 30.0% |
AAAAACAACCTTATGAAGCA+GGG | - | chr6_4:9552760-9552779 | None:intergenic | 30.0% | |
!!! | TTTCTGTGTTTTTTAGAGCT+TGG | + | chr6_4:9552793-9552812 | Msa0975750:intron | 30.0% |
TTGGAATCATCTAGTACTAT+TGG | + | chr6_4:9552812-9552831 | Msa0975750:intron | 30.0% | |
CATAATGCTATTGTAGCAAA+GGG | + | chr6_4:9552987-9553006 | Msa0975750:intron | 30.0% | |
ATAATGCTATTGTAGCAAAG+GGG | + | chr6_4:9552988-9553007 | Msa0975750:intron | 30.0% | |
AGAAGAACAATTGATGAAGA+AGG | + | chr6_4:9553020-9553039 | Msa0975750:CDS | 30.0% | |
AGCATATGCACTTTAAACTA+AGG | - | chr6_4:9553150-9553169 | None:intergenic | 30.0% | |
GTAATGTGTTAACTAAGCAT+AGG | + | chr6_4:9553219-9553238 | Msa0975750:intron | 30.0% | |
CTATATCCATAATTGCATGA+TGG | - | chr6_4:9553289-9553308 | None:intergenic | 30.0% | |
!! | TCATCACTGATTTAAGCTAT+TGG | - | chr6_4:9553318-9553337 | None:intergenic | 30.0% |
CTAAAATCATACCACATGAT+GGG | - | chr6_4:9553403-9553422 | None:intergenic | 30.0% | |
! | TCTAAAATCATACCACATGA+TGG | - | chr6_4:9553404-9553423 | None:intergenic | 30.0% |
! | TCAAGACAGTGTTTTATCAT+TGG | - | chr6_4:9553766-9553785 | None:intergenic | 30.0% |
TATCGAGTAAATTCAGTTTC+AGG | + | chr6_4:9553801-9553820 | Msa0975750:intron | 30.0% | |
CAAATCTGTGATAATTCTGT+TGG | + | chr6_4:9553905-9553924 | Msa0975750:intron | 30.0% | |
TCATATTATGCTTAGGCTAA+TGG | - | chr6_4:9553945-9553964 | None:intergenic | 30.0% | |
GATTCAATCATCTTCATGTT+AGG | - | chr6_4:9554036-9554055 | None:intergenic | 30.0% | |
CATGATGTGTAAAACTAAAG+GGG | - | chr6_4:9554247-9554266 | None:intergenic | 30.0% | |
TTTGATAGAACAGCAGAAAA+TGG | + | chr6_4:9554317-9554336 | Msa0975750:CDS | 30.0% | |
AATCTCATAATGAACACTCT+TGG | + | chr6_4:9554574-9554593 | Msa0975750:intron | 30.0% | |
CATAACACAGTTATTGATCT+TGG | + | chr6_4:9554651-9554670 | Msa0975750:intron | 30.0% | |
TCATTCGATCTCAAAATCAA+TGG | + | chr6_4:9554674-9554693 | Msa0975750:intron | 30.0% | |
ACACACACTTTAATTGATCT+CGG | - | chr6_4:9554764-9554783 | None:intergenic | 30.0% | |
!!! | TTTGGTTCTTTTGGTATAGT+TGG | - | chr6_4:9554882-9554901 | None:intergenic | 30.0% |
!!! | ATGTGAAACTTTGGTTCTTT+TGG | - | chr6_4:9554891-9554910 | None:intergenic | 30.0% |
GTTCACATTCTCAGTTTCTA+AGG | - | chr6_4:9551581-9551600 | None:intergenic | 35.0% | |
GATCAAAGTCCTAAGAAAAC+GGG | + | chr6_4:9551739-9551758 | Msa0975750:CDS | 35.0% | |
! | TTACACAAACCCGTTTTCTT+AGG | - | chr6_4:9551751-9551770 | None:intergenic | 35.0% |
! | AAAACGGGTTTGTGTAAATG+TGG | + | chr6_4:9551754-9551773 | Msa0975750:CDS | 35.0% |
AGTTTGAGAGAATCACAAGA+AGG | + | chr6_4:9551820-9551839 | Msa0975750:CDS | 35.0% | |
GTTTGAGAGAATCACAAGAA+GGG | + | chr6_4:9551821-9551840 | Msa0975750:CDS | 35.0% | |
AGGAATAGTGTACCTGAAAA+TGG | + | chr6_4:9552078-9552097 | Msa0975750:CDS | 35.0% | |
!! | TGCATCACTTTTCCATTTTC+AGG | - | chr6_4:9552093-9552112 | None:intergenic | 35.0% |
! | AAAAGTGATGCATTTGGTGA+AGG | + | chr6_4:9552101-9552120 | Msa0975750:CDS | 35.0% |
GCAATTTCAACAACCTGTTA+AGG | + | chr6_4:9552227-9552246 | Msa0975750:CDS | 35.0% | |
TTTCAACAACCTGTTAAGGA+TGG | + | chr6_4:9552231-9552250 | Msa0975750:CDS | 35.0% | |
ACTTTGACATCTGAACAACT+TGG | + | chr6_4:9552306-9552325 | Msa0975750:CDS | 35.0% | |
! | AACAACTTGGATTGGATCAA+AGG | + | chr6_4:9552319-9552338 | Msa0975750:CDS | 35.0% |
! | ACAACTTGGATTGGATCAAA+GGG | + | chr6_4:9552320-9552339 | Msa0975750:CDS | 35.0% |
GGTTTCAGTTACATCTTCTT+GGG | + | chr6_4:9552341-9552360 | Msa0975750:CDS | 35.0% | |
CAAAAACAACCTTATGAAGC+AGG | - | chr6_4:9552761-9552780 | None:intergenic | 35.0% | |
GAATCATCTAGTACTATTGG+AGG | + | chr6_4:9552815-9552834 | Msa0975750:intron | 35.0% | |
CCTTTGCTACAATAGCATTA+TGG | - | chr6_4:9552989-9553008 | None:intergenic | 35.0% | |
CCATAATGCTATTGTAGCAA+AGG | + | chr6_4:9552986-9553005 | Msa0975750:intron | 35.0% | |
ATGAGAATTCCTATTGCACA+AGG | + | chr6_4:9553072-9553091 | Msa0975750:CDS | 35.0% | |
GATTGTCCATCATGCAATTA+TGG | + | chr6_4:9553280-9553299 | Msa0975750:intron | 35.0% | |
!! | ATGATCATTTTTGCTCTTGC+TGG | + | chr6_4:9553704-9553723 | Msa0975750:intron | 35.0% |
!! | TGATCATTTTTGCTCTTGCT+GGG | + | chr6_4:9553705-9553724 | Msa0975750:intron | 35.0% |
TTGTTTGGCTACCCTTAATA+AGG | + | chr6_4:9553728-9553747 | Msa0975750:intron | 35.0% | |
ACTCGATATCAGCTGATATA+CGG | - | chr6_4:9553789-9553808 | None:intergenic | 35.0% | |
ATTGAGGCAAACTCAGAAAA+TGG | - | chr6_4:9553873-9553892 | None:intergenic | 35.0% | |
AATGAAGGTTCAATGCAGTT+AGG | - | chr6_4:9553985-9554004 | None:intergenic | 35.0% | |
AAGTTCACTAAGTCAATCTC+AGG | - | chr6_4:9554010-9554029 | None:intergenic | 35.0% | |
!! | ATAATTCTGTTGGTAGCTTC+TGG | + | chr6_4:9554060-9554079 | Msa0975750:intron | 35.0% |
TGAAGCTTCATAGTGATTTG+AGG | + | chr6_4:9554161-9554180 | Msa0975750:CDS | 35.0% | |
GAAGCTTCATAGTGATTTGA+GGG | + | chr6_4:9554162-9554181 | Msa0975750:CDS | 35.0% | |
GTAAAACTAAAGGGGAAAGA+AGG | - | chr6_4:9554239-9554258 | None:intergenic | 35.0% | |
TGATGAATGCTTAACTGTGT+AGG | + | chr6_4:9554278-9554297 | Msa0975750:intron | 35.0% | |
AGAACAGCAGAAAATGGAAA+TGG | + | chr6_4:9554323-9554342 | Msa0975750:CDS | 35.0% | |
AGCAGAAAATGGAAATGGAA+AGG | + | chr6_4:9554328-9554347 | Msa0975750:CDS | 35.0% | |
AGAAACATGGTAACTCAATC+AGG | - | chr6_4:9554403-9554422 | None:intergenic | 35.0% | |
TATATATATGCCCTTACAGC+TGG | + | chr6_4:9554447-9554466 | Msa0975750:intron | 35.0% | |
TCTGGCGTATTATTGAGATT+CGG | + | chr6_4:9554603-9554622 | Msa0975750:intron | 35.0% | |
GATCAATAACTGTGTTATGC+AGG | - | chr6_4:9554650-9554669 | None:intergenic | 35.0% | |
GATCTCAAAATCAATGGCAA+AGG | + | chr6_4:9554680-9554699 | Msa0975750:intron | 35.0% | |
TCAAGCACTTGATCTTCTTA+TGG | - | chr6_4:9554920-9554939 | None:intergenic | 35.0% | |
TCTAAGGGTTTCTTCTTCTC+TGG | - | chr6_4:9551565-9551584 | None:intergenic | 40.0% | |
!! | ACGTGAAAGTGTTCTTGATG+AGG | + | chr6_4:9551909-9551928 | Msa0975750:CDS | 40.0% |
AAGGAGAAGAGAGAGAGTAA+TGG | + | chr6_4:9552047-9552066 | Msa0975750:CDS | 40.0% | |
! | AGAGAGTAATGGAAGAAGCA+AGG | + | chr6_4:9552058-9552077 | Msa0975750:CDS | 40.0% |
!! | ATTTGGTGAAGGCTTTTGAG+AGG | + | chr6_4:9552112-9552131 | Msa0975750:CDS | 40.0% |
AAGGGAGAAAGAGAAGAATG+AGG | + | chr6_4:9552149-9552168 | Msa0975750:intron | 40.0% | |
GAAAGAGAAGAATGAGGAAG+AGG | + | chr6_4:9552155-9552174 | Msa0975750:CDS | 40.0% | |
GGTTGTTGAAATTGCAATCC+TGG | - | chr6_4:9552222-9552241 | None:intergenic | 40.0% | |
TGTTCATCACCATCCTTAAC+AGG | - | chr6_4:9552243-9552262 | None:intergenic | 40.0% | |
! | GAAGCTGTTTGTGATGATGA+TGG | + | chr6_4:9552267-9552286 | Msa0975750:CDS | 40.0% |
GACATCTGAACAACTTGGAT+TGG | + | chr6_4:9552311-9552330 | Msa0975750:CDS | 40.0% | |
GGGTTTCAGTTACATCTTCT+TGG | + | chr6_4:9552340-9552359 | Msa0975750:CDS | 40.0% | |
GTTACATCTTCTTGGGATTG+TGG | + | chr6_4:9552348-9552367 | Msa0975750:CDS | 40.0% | |
ACAAACACAGACACAGATAC+TGG | - | chr6_4:9552735-9552754 | None:intergenic | 40.0% | |
CATCTAGTACTATTGGAGGA+AGG | + | chr6_4:9552819-9552838 | Msa0975750:intron | 40.0% | |
GTCAGAAACCTTTCAAGCTA+AGG | + | chr6_4:9552876-9552895 | Msa0975750:CDS | 40.0% | |
!! | TGGCTATATTGGTGATGCAT+TGG | + | chr6_4:9552963-9552982 | Msa0975750:intron | 40.0% |
TCAGGTTCATCAATAGTCCA+TGG | - | chr6_4:9553102-9553121 | None:intergenic | 40.0% | |
! | ATGGACTATTGATGAACCTG+AGG | + | chr6_4:9553101-9553120 | Msa0975750:CDS | 40.0% |
CTATTGATGAACCTGAGGTA+AGG | + | chr6_4:9553106-9553125 | Msa0975750:intron | 40.0% | |
TGAGAAAATGACCTTACCTC+AGG | - | chr6_4:9553120-9553139 | None:intergenic | 40.0% | |
GATGGACAATCAGAGACTAA+TGG | - | chr6_4:9553271-9553290 | None:intergenic | 40.0% | |
GTACTTTACAACCCATCATG+TGG | + | chr6_4:9553389-9553408 | Msa0975750:intron | 40.0% | |
TCCTAGCATTACACATGACA+AGG | + | chr6_4:9553599-9553618 | Msa0975750:intron | 40.0% | |
TCCTTGTCATGTGTAATGCT+AGG | - | chr6_4:9553603-9553622 | None:intergenic | 40.0% | |
TGGCTACCCTTAATAAGGTT+AGG | + | chr6_4:9553733-9553752 | Msa0975750:intron | 40.0% | |
AGTCAATCTCAGGCTAATGA+AGG | - | chr6_4:9554000-9554019 | None:intergenic | 40.0% | |
CTATGAAGCTTCACGTCAAT+AGG | - | chr6_4:9554154-9554173 | None:intergenic | 40.0% | |
GCTGAATTTGATCATCAGGT+AGG | + | chr6_4:9554196-9554215 | Msa0975750:intron | 40.0% | |
TGAATGCTTAACTGTGTAGG+TGG | + | chr6_4:9554281-9554300 | Msa0975750:intron | 40.0% | |
GGAAATGGAAAGGCAACAAA+AGG | + | chr6_4:9554338-9554357 | Msa0975750:CDS | 40.0% | |
GGTCTGTCAAAATAAGGCAT+TGG | - | chr6_4:9554526-9554545 | None:intergenic | 40.0% | |
TTGACAGACCATTTATTCCG+AGG | + | chr6_4:9554536-9554555 | Msa0975750:CDS | 40.0% | |
CATTACCTCCTCGGAATAAA+TGG | - | chr6_4:9554547-9554566 | None:intergenic | 40.0% | |
CATTTATTCCGAGGAGGTAA+TGG | + | chr6_4:9554545-9554564 | Msa0975750:intron | 40.0% | |
TTGATCAACCATTACCTCCT+CGG | - | chr6_4:9554556-9554575 | None:intergenic | 40.0% | |
! | GAACACTCTTGGAAGTTTTC+TGG | + | chr6_4:9554585-9554604 | Msa0975750:intron | 40.0% |
TGGTGAGGTATGTGAAACTT+TGG | - | chr6_4:9554900-9554919 | None:intergenic | 40.0% | |
CACTTGATCTTCTTATGGTG+AGG | - | chr6_4:9554915-9554934 | None:intergenic | 40.0% | |
CTTCAACTGAGAGAATTCAG+AGG | + | chr6_4:9554971-9554990 | Msa0975750:intron | 40.0% | |
!! | GAGAATGTTGATGATTCCAC+AGG | + | chr6_4:9555006-9555025 | Msa0975750:intron | 40.0% |
CTCTGACGAATTCTCTTCTG+CGG | - | chr6_4:9551688-9551707 | None:intergenic | 45.0% | |
AGTGTGTTTGCGAAGCGTAT+CGG | + | chr6_4:9551797-9551816 | Msa0975750:intron | 45.0% | |
GAAGAATGAGGAAGAGGAAG+AGG | + | chr6_4:9552161-9552180 | Msa0975750:CDS | 45.0% | |
GTGATGAAATGGGCATTACC+AGG | + | chr6_4:9552201-9552220 | Msa0975750:CDS | 45.0% | |
GTGTGTAGCAGGAATTCTTC+TGG | + | chr6_4:9552515-9552534 | Msa0975750:intron | 45.0% | |
TGTAGCAGGAATTCTTCTGG+TGG | + | chr6_4:9552518-9552537 | Msa0975750:intron | 45.0% | |
GTTTGTGTCCCTGCTTCATA+AGG | + | chr6_4:9552749-9552768 | Msa0975750:intron | 45.0% | |
CTAGTACTATTGGAGGAAGG+AGG | + | chr6_4:9552822-9552841 | Msa0975750:intron | 45.0% | |
ACCTTTCAAGCTAAGGACTG+AGG | + | chr6_4:9552883-9552902 | Msa0975750:CDS | 45.0% | |
! | ACCTCAGTCCTTAGCTTGAA+AGG | - | chr6_4:9552887-9552906 | None:intergenic | 45.0% |
CATGGAAGACCTTGTGCAAT+AGG | - | chr6_4:9553084-9553103 | None:intergenic | 45.0% | |
CTATTGCACAAGGTCTTCCA+TGG | + | chr6_4:9553082-9553101 | Msa0975750:CDS | 45.0% | |
TTTGCTCTTGCTGGGTTGTT+TGG | + | chr6_4:9553713-9553732 | Msa0975750:intron | 45.0% | |
TTTGTGCTTTCTTTCACCGG+AGG | - | chr6_4:9554130-9554149 | None:intergenic | 45.0% | |
! | GGCTTTGTGCTTTCTTTCAC+CGG | - | chr6_4:9554133-9554152 | None:intergenic | 45.0% |
TCGCGCTGAATTTGATCATC+AGG | + | chr6_4:9554192-9554211 | Msa0975750:CDS | 45.0% | |
ACAGACCATTTATTCCGAGG+AGG | + | chr6_4:9554539-9554558 | Msa0975750:CDS | 45.0% | |
! | ACGTGCATTTTGCACTGTTG+TGG | + | chr6_4:9554787-9554806 | Msa0975750:intron | 45.0% |
TCACATCAGCAAATGACCTG+TGG | - | chr6_4:9555025-9555044 | None:intergenic | 45.0% | |
! | CGATGAAGAAGAAGGCGTAG+AGG | + | chr6_4:9551984-9552003 | Msa0975750:CDS | 50.0% |
TCTTCTTGGGATTGTGGCAG+TGG | + | chr6_4:9552354-9552373 | Msa0975750:CDS | 50.0% | |
TCTTGTGCAGTGTGTGTAGC+AGG | + | chr6_4:9552504-9552523 | Msa0975750:intron | 50.0% | |
GTACTATTGGAGGAAGGAGG+TGG | + | chr6_4:9552825-9552844 | Msa0975750:intron | 50.0% | |
! | GCAGTGCTTGCTAAAACCTC+CGG | + | chr6_4:9554111-9554130 | Msa0975750:intron | 50.0% |
TCCTCTTCAGCCAGCTGTAA+GGG | - | chr6_4:9554460-9554479 | None:intergenic | 50.0% | |
TTCCTCTTCAGCCAGCTGTA+AGG | - | chr6_4:9554461-9554480 | None:intergenic | 50.0% | |
!! | TAAGGCATTGGCTGCGCTTT+AGG | - | chr6_4:9554514-9554533 | None:intergenic | 50.0% |
GGGATTGTGGCAGTGGAAGA+AGG | + | chr6_4:9552361-9552380 | Msa0975750:CDS | 55.0% | |
!! | CATGTCTCGGTGTCAGACAC+CGG | - | chr6_4:9552636-9552655 | None:intergenic | 55.0% |
GCCCTTACAGCTGGCTGAAG+AGG | + | chr6_4:9554456-9554475 | Msa0975750:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 9551556 | 9555068 | 9551556 | ID=Msa0975750;Name=Msa0975750 |
chr6_4 | mRNA | 9551556 | 9555068 | 9551556 | ID=Msa0975750-mRNA-1;Parent=Msa0975750;Name=Msa0975750-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.6|0.54|1|0.4|0.27|11|58|441 |
chr6_4 | exon | 9551556 | 9551793 | 9551556 | ID=Msa0975750-mRNA-1:exon:3420;Parent=Msa0975750-mRNA-1 |
chr6_4 | exon | 9551812 | 9551964 | 9551812 | ID=Msa0975750-mRNA-1:exon:3421;Parent=Msa0975750-mRNA-1 |
chr6_4 | exon | 9551974 | 9552133 | 9551974 | ID=Msa0975750-mRNA-1:exon:3422;Parent=Msa0975750-mRNA-1 |
chr6_4 | exon | 9552152 | 9552382 | 9552152 | ID=Msa0975750-mRNA-1:exon:3423;Parent=Msa0975750-mRNA-1 |
chr6_4 | exon | 9552841 | 9552904 | 9552841 | ID=Msa0975750-mRNA-1:exon:3424;Parent=Msa0975750-mRNA-1 |
chr6_4 | exon | 9553003 | 9553122 | 9553003 | ID=Msa0975750-mRNA-1:exon:3425;Parent=Msa0975750-mRNA-1 |
chr6_4 | exon | 9554115 | 9554213 | 9554115 | ID=Msa0975750-mRNA-1:exon:3426;Parent=Msa0975750-mRNA-1 |
chr6_4 | exon | 9554300 | 9554359 | 9554300 | ID=Msa0975750-mRNA-1:exon:3427;Parent=Msa0975750-mRNA-1 |
chr6_4 | exon | 9554466 | 9554560 | 9554466 | ID=Msa0975750-mRNA-1:exon:3428;Parent=Msa0975750-mRNA-1 |
chr6_4 | exon | 9554866 | 9554969 | 9554866 | ID=Msa0975750-mRNA-1:exon:3429;Parent=Msa0975750-mRNA-1 |
chr6_4 | exon | 9555009 | 9555068 | 9555009 | ID=Msa0975750-mRNA-1:exon:3430;Parent=Msa0975750-mRNA-1 |
chr6_4 | CDS | 9551556 | 9551793 | 9551556 | ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1 |
chr6_4 | CDS | 9551812 | 9551964 | 9551812 | ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1 |
chr6_4 | CDS | 9551974 | 9552133 | 9551974 | ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1 |
chr6_4 | CDS | 9552152 | 9552382 | 9552152 | ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1 |
chr6_4 | CDS | 9552841 | 9552904 | 9552841 | ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1 |
chr6_4 | CDS | 9553003 | 9553122 | 9553003 | ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1 |
chr6_4 | CDS | 9554115 | 9554213 | 9554115 | ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1 |
chr6_4 | CDS | 9554300 | 9554359 | 9554300 | ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1 |
chr6_4 | CDS | 9554466 | 9554560 | 9554466 | ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1 |
chr6_4 | CDS | 9554866 | 9554969 | 9554866 | ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1 |
chr6_4 | CDS | 9555009 | 9555010 | 9555009 | ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1 |
chr6_4 | three_prime_UTR | 9555011 | 9555068 | 9555011 | ID=Msa0975750-mRNA-1:three_prime_utr;Parent=Msa0975750-mRNA-1 |
Gene Sequence |
Protein sequence |