AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0975750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0975750 MtrunA17_Chr6g0454541 85.361 485 23 6 1 441 1 481 0.0 720
Msa0975750 MtrunA17_Chr7g0218721 46.653 478 164 13 8 441 23 453 1.55e-94 292
Msa0975750 MtrunA17_Chr3g0109961 49.541 109 53 1 326 434 49 155 7.28e-27 105
Msa0975750 MtrunA17_Chr4g0051971 48.571 105 52 1 326 430 9 111 4.72e-25 99.8
Msa0975750 MtrunA17_Chr4g0040361 26.415 212 96 4 270 422 518 728 3.66e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0975750 AT5G15510.1 48.643 479 154 15 11 430 31 476 6.75e-121 361
Msa0975750 AT3G01015.1 46.934 473 164 14 11 432 32 468 3.17e-113 342
Msa0975750 AT5G15510.4 47.588 456 147 15 11 407 31 453 1.34e-106 323
Msa0975750 AT5G15510.3 47.588 456 147 15 11 407 31 453 1.34e-106 323
Msa0975750 AT5G15510.2 47.033 455 151 14 11 407 31 453 1.45e-105 323
Msa0975750 AT5G37478.4 54.639 97 44 0 324 420 36 132 3.78e-28 109
Msa0975750 AT5G37478.1 54.639 97 44 0 324 420 56 152 5.16e-28 109
Msa0975750 AT5G37478.2 54.639 97 44 0 324 420 23 119 8.84e-28 108
Msa0975750 AT1G03780.2 26.190 210 96 4 272 422 522 731 3.16e-13 72.4
Msa0975750 AT1G03780.3 26.190 210 96 4 272 422 522 731 3.23e-13 72.4

Find 87 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCACATTCTCAGTTTCTA+AGG 0.217493 6_4:-9551578 None:intergenic
TAAGGCATTGGCTGCGCTTT+AGG 0.259331 6_4:-9554511 None:intergenic
AATTTGATTATTCATGATAT+TGG 0.263242 6_4:+9551943 Msa0975750:CDS
AGAAATATTCAATTTGTATA+TGG 0.272800 6_4:+9555047 Msa0975750:three_prime_UTR
AGGAAGAAATTAGAAGATTA+AGG 0.282966 6_4:+9554476 Msa0975750:CDS
TTTCGATTAGAAAACTCATT+AGG 0.285358 6_4:-9551601 None:intergenic
ATGTGAAACTTTGGTTCTTT+TGG 0.287997 6_4:-9554888 None:intergenic
CATTACCTCCTCGGAATAAA+TGG 0.310323 6_4:-9554544 None:intergenic
ATAAATGGTCTGTCAAAATA+AGG 0.316908 6_4:-9554529 None:intergenic
AGAGGATGATAAGAAGAATA+AGG 0.324799 6_4:+9552179 Msa0975750:CDS
GGGTTTCAGTTACATCTTCT+TGG 0.324833 6_4:+9552340 Msa0975750:CDS
TCAAGCACTTGATCTTCTTA+TGG 0.325673 6_4:-9554917 None:intergenic
TTTGATAGAACAGCAGAAAA+TGG 0.326431 6_4:+9554317 Msa0975750:CDS
AGGAATAGTGTACCTGAAAA+TGG 0.328347 6_4:+9552078 Msa0975750:CDS
TGTTCATCACCATCCTTAAC+AGG 0.329445 6_4:-9552240 None:intergenic
TTCGATTAGAAAACTCATTA+GGG 0.343147 6_4:-9551600 None:intergenic
TCTAAGGGTTTCTTCTTCTC+TGG 0.345090 6_4:-9551562 None:intergenic
AGAAGAATAAGGTGATGAAA+TGG 0.354081 6_4:+9552190 Msa0975750:CDS
CATGGAAGACCTTGTGCAAT+AGG 0.357245 6_4:-9553081 None:intergenic
GCAATTTCAACAACCTGTTA+AGG 0.359084 6_4:+9552227 Msa0975750:CDS
CTTCAGAAATCGTTGAATAA+AGG 0.377474 6_4:+9551628 Msa0975750:CDS
GACATCTGAACAACTTGGAT+TGG 0.394114 6_4:+9552311 Msa0975750:CDS
AGAGGAAGAAAATGAAGAAA+AGG 0.403515 6_4:+9552002 Msa0975750:CDS
GGTTTCAGTTACATCTTCTT+GGG 0.408587 6_4:+9552341 Msa0975750:CDS
CTATGAAGCTTCACGTCAAT+AGG 0.408886 6_4:-9554151 None:intergenic
GAAGAATAAGGTGATGAAAT+GGG 0.424705 6_4:+9552191 Msa0975750:CDS
GGTTGTTGAAATTGCAATCC+TGG 0.428251 6_4:-9552219 None:intergenic
GAAAGAGAAGAATGAGGAAG+AGG 0.431092 6_4:+9552155 Msa0975750:CDS
GAGGAAGAAAATGAAGAAAA+GGG 0.436113 6_4:+9552003 Msa0975750:CDS
GGCTTTGTGCTTTCTTTCAC+CGG 0.443138 6_4:-9554130 None:intergenic
GAAGAATGAGGAAGAGGAAG+AGG 0.447358 6_4:+9552161 Msa0975750:CDS
ATTGTAGTTCAATGGTGAAA+AGG 0.450131 6_4:+9552028 Msa0975750:CDS
TCGCGCTGAATTTGATCATC+AGG 0.452548 6_4:+9554192 Msa0975750:CDS
ACCTCAGTCCTTAGCTTGAA+AGG 0.454283 6_4:-9552884 None:intergenic
TGATCAAAGTCCTAAGAAAA+CGG 0.455541 6_4:+9551738 Msa0975750:CDS
AGAACAGCAGAAAATGGAAA+TGG 0.455873 6_4:+9554323 Msa0975750:CDS
GATCAAAGTCCTAAGAAAAC+GGG 0.463640 6_4:+9551739 Msa0975750:CDS
TCTTCTTGGGATTGTGGCAG+TGG 0.465032 6_4:+9552354 Msa0975750:CDS
GTTACATCTTCTTGGGATTG+TGG 0.472621 6_4:+9552348 Msa0975750:CDS
GGGATTGTGGCAGTGGAAGA+AGG 0.477674 6_4:+9552361 Msa0975750:CDS
AACAACTTGGATTGGATCAA+AGG 0.483100 6_4:+9552319 Msa0975750:CDS
AAAGGGTAATTGTAGTTCAA+TGG 0.483615 6_4:+9552020 Msa0975750:CDS
AGAAATTAGAAGATTAAGGA+AGG 0.491659 6_4:+9554480 Msa0975750:CDS
ACAACTTGGATTGGATCAAA+GGG 0.495261 6_4:+9552320 Msa0975750:CDS
AAATGGAAAAGTGATGCATT+TGG 0.498366 6_4:+9552095 Msa0975750:CDS
GCCCTTACAGCTGGCTGAAG+AGG 0.498637 6_4:+9554456 Msa0975750:intron
GAAGCTTCATAGTGATTTGA+GGG 0.499102 6_4:+9554162 Msa0975750:CDS
TGAAGCTTCATAGTGATTTG+AGG 0.503817 6_4:+9554161 Msa0975750:CDS
GGAAATGGAAAGGCAACAAA+AGG 0.506949 6_4:+9554338 Msa0975750:CDS
CTATTGCACAAGGTCTTCCA+TGG 0.513189 6_4:+9553082 Msa0975750:CDS
AGAAGAACAATTGATGAAGA+AGG 0.519315 6_4:+9553020 Msa0975750:CDS
CTCTGACGAATTCTCTTCTG+CGG 0.520745 6_4:-9551685 None:intergenic
TTATTCAACGATTTCTGAAG+TGG 0.528946 6_4:-9551625 None:intergenic
GTCAGAAACCTTTCAAGCTA+AGG 0.529285 6_4:+9552876 Msa0975750:CDS
AGTGTGTTTGCGAAGCGTAT+CGG 0.531754 6_4:+9551797 Msa0975750:intron
AGAGAGTAATGGAAGAAGCA+AGG 0.532326 6_4:+9552058 Msa0975750:CDS
TGGTGAGGTATGTGAAACTT+TGG 0.533377 6_4:-9554897 None:intergenic
TTCACATTCTCAGTTTCTAA+GGG 0.533557 6_4:-9551577 None:intergenic
AAAACGGGTTTGTGTAAATG+TGG 0.539380 6_4:+9551754 Msa0975750:CDS
AAGGAGAAGAGAGAGAGTAA+TGG 0.549490 6_4:+9552047 Msa0975750:CDS
GCAGTGCTTGCTAAAACCTC+CGG 0.554487 6_4:+9554111 Msa0975750:intron
GTGATGAAATGGGCATTACC+AGG 0.561341 6_4:+9552201 Msa0975750:CDS
TTGATCAACCATTACCTCCT+CGG 0.562441 6_4:-9554553 None:intergenic
CACTTGATCTTCTTATGGTG+AGG 0.566706 6_4:-9554912 None:intergenic
ACTTTGACATCTGAACAACT+TGG 0.567825 6_4:+9552306 Msa0975750:CDS
TCAGGTTCATCAATAGTCCA+TGG 0.571822 6_4:-9553099 None:intergenic
GTTTGAGAGAATCACAAGAA+GGG 0.574510 6_4:+9551821 Msa0975750:CDS
AAGGGAGAAAGAGAAGAATG+AGG 0.575728 6_4:+9552149 Msa0975750:intron
TTTCAACAACCTGTTAAGGA+TGG 0.578215 6_4:+9552231 Msa0975750:CDS
GGTCTGTCAAAATAAGGCAT+TGG 0.582294 6_4:-9554523 None:intergenic
TATTCAACGATTTCTGAAGT+GGG 0.582434 6_4:-9551624 None:intergenic
ACGTGAAAGTGTTCTTGATG+AGG 0.584228 6_4:+9551909 Msa0975750:CDS
AGTTTGAGAGAATCACAAGA+AGG 0.589253 6_4:+9551820 Msa0975750:CDS
TTGACAGACCATTTATTCCG+AGG 0.591323 6_4:+9554536 Msa0975750:CDS
AGCAGAAAATGGAAATGGAA+AGG 0.592553 6_4:+9554328 Msa0975750:CDS
CGATGAAGAAGAAGGCGTAG+AGG 0.596905 6_4:+9551984 Msa0975750:CDS
TTTGTGCTTTCTTTCACCGG+AGG 0.623077 6_4:-9554127 None:intergenic
AAAAGTGATGCATTTGGTGA+AGG 0.627407 6_4:+9552101 Msa0975750:CDS
AAATGTGGAGAAAATAGTGA+TGG 0.637023 6_4:+9551769 Msa0975750:CDS
TCACATCAGCAAATGACCTG+TGG 0.638400 6_4:-9555022 None:intergenic
GAAGCTGTTTGTGATGATGA+TGG 0.640877 6_4:+9552267 Msa0975750:CDS
GAGAATGTTGATGATTCCAC+AGG 0.646533 6_4:+9555006 Msa0975750:intron
ACAGACCATTTATTCCGAGG+AGG 0.649331 6_4:+9554539 Msa0975750:CDS
ATGAGAATTCCTATTGCACA+AGG 0.660872 6_4:+9553072 Msa0975750:CDS
ATGGACTATTGATGAACCTG+AGG 0.663121 6_4:+9553101 Msa0975750:CDS
ACCTTTCAAGCTAAGGACTG+AGG 0.672965 6_4:+9552883 Msa0975750:CDS
ATAATGCTATTGTAGCAAAG+GGG 0.759633 6_4:+9552988 Msa0975750:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTGATTATTCATGATAT+TGG + chr6_4:9551943-9551962 Msa0975750:CDS 15.0%
!!! TTTCGAAAAAGAGAATTTTT+TGG + chr6_4:9551846-9551865 Msa0975750:CDS 20.0%
!!! CTCAAATTGTTATTTGTTAT+CGG + chr6_4:9552681-9552700 Msa0975750:intron 20.0%
!!! TAATTGATGACACAAATAAT+TGG + chr6_4:9552906-9552925 Msa0975750:intron 20.0%
!!! AATTTCTTCAAATTTTTCAG+TGG + chr6_4:9552943-9552962 Msa0975750:intron 20.0%
!! TAAAATCTCATAGTCAAATT+TGG + chr6_4:9553173-9553192 Msa0975750:intron 20.0%
!! TTTGATAAAGAAAAACATTG+AGG - chr6_4:9553889-9553908 None:intergenic 20.0%
!!! GTTATTGATTTGAAATCAAT+TGG - chr6_4:9554742-9554761 None:intergenic 20.0%
!! ACAAAAAGAGACAAAAATAA+TGG - chr6_4:9554821-9554840 None:intergenic 20.0%
!!! TTTGTCTCATCATTATATTT+TGG + chr6_4:9554836-9554855 Msa0975750:intron 20.0%
!!! ATCATTATATTTTGGTTTGA+AGG + chr6_4:9554844-9554863 Msa0975750:intron 20.0%
! TTCGATTAGAAAACTCATTA+GGG - chr6_4:9551603-9551622 None:intergenic 25.0%
! TTTCGATTAGAAAACTCATT+AGG - chr6_4:9551604-9551623 None:intergenic 25.0%
! AGAGGTTACTTAGTATAAAA+AGG + chr6_4:9552130-9552149 Msa0975750:intron 25.0%
! GAGGTTACTTAGTATAAAAA+GGG + chr6_4:9552131-9552150 Msa0975750:intron 25.0%
!!! AAAATGCAACAAGCTTTAAA+GGG - chr6_4:9552417-9552436 None:intergenic 25.0%
!! TAAAATGCAACAAGCTTTAA+AGG - chr6_4:9552418-9552437 None:intergenic 25.0%
!!! GAGTTTGATTTGATTCATTT+TGG + chr6_4:9552441-9552460 Msa0975750:intron 25.0%
! CATGCCTTAATAAAAAATGT+CGG - chr6_4:9552612-9552631 None:intergenic 25.0%
!!! ATTTTTTATTAAGGCATGTC+CGG + chr6_4:9552614-9552633 Msa0975750:intron 25.0%
! TCTAATTTAATCACATGTCT+CGG - chr6_4:9552649-9552668 None:intergenic 25.0%
!!! AAATTTTTCAGTGGCTATAT+TGG + chr6_4:9552952-9552971 Msa0975750:intron 25.0%
! CAAAGTAAGAAAAATTACAG+TGG + chr6_4:9553367-9553386 Msa0975750:intron 25.0%
!! GTAAAAACTTTTTACACTGA+CGG + chr6_4:9553483-9553502 Msa0975750:intron 25.0%
! ATGCTAGGATATTAGATATA+AGG - chr6_4:9553588-9553607 None:intergenic 25.0%
! ATGTAATGTACTGTTCTAAT+TGG - chr6_4:9553637-9553656 None:intergenic 25.0%
! GATTAACCTAACCTTATTAA+GGG - chr6_4:9553742-9553761 None:intergenic 25.0%
! AGATTAACCTAACCTTATTA+AGG - chr6_4:9553743-9553762 None:intergenic 25.0%
! TTCATCTTCATATTATGCTT+AGG - chr6_4:9553952-9553971 None:intergenic 25.0%
! TGAATCTATGATAATTCTGT+TGG + chr6_4:9554050-9554069 Msa0975750:intron 25.0%
! ACAAAAAATGCTTAGACTAA+TGG - chr6_4:9554090-9554109 None:intergenic 25.0%
! TCATGATGTGTAAAACTAAA+GGG - chr6_4:9554248-9554267 None:intergenic 25.0%
! TTCATGATGTGTAAAACTAA+AGG - chr6_4:9554249-9554268 None:intergenic 25.0%
!! TTGATTTGAGATGTGAAAAT+TGG - chr6_4:9554375-9554394 None:intergenic 25.0%
! CACTTTAGATAAAAGAAACA+TGG - chr6_4:9554416-9554435 None:intergenic 25.0%
! AGGAAGAAATTAGAAGATTA+AGG + chr6_4:9554476-9554495 Msa0975750:CDS 25.0%
! AGAAATTAGAAGATTAAGGA+AGG + chr6_4:9554480-9554499 Msa0975750:CDS 25.0%
! ATAAATGGTCTGTCAAAATA+AGG - chr6_4:9554532-9554551 None:intergenic 25.0%
!!! ATATAAAGTTGATTTGCGAA+AGG + chr6_4:9554705-9554724 Msa0975750:intron 25.0%
TTCACATTCTCAGTTTCTAA+GGG - chr6_4:9551580-9551599 None:intergenic 30.0%
!! TATTCAACGATTTCTGAAGT+GGG - chr6_4:9551627-9551646 None:intergenic 30.0%
! TTATTCAACGATTTCTGAAG+TGG - chr6_4:9551628-9551647 None:intergenic 30.0%
CTTCAGAAATCGTTGAATAA+AGG + chr6_4:9551628-9551647 Msa0975750:CDS 30.0%
TGATCAAAGTCCTAAGAAAA+CGG + chr6_4:9551738-9551757 Msa0975750:CDS 30.0%
AAATGTGGAGAAAATAGTGA+TGG + chr6_4:9551769-9551788 Msa0975750:CDS 30.0%
AGAAAAATCGATGAAGAAGA+AGG + chr6_4:9551976-9551995 Msa0975750:CDS 30.0%
AGAGGAAGAAAATGAAGAAA+AGG + chr6_4:9552002-9552021 Msa0975750:CDS 30.0%
GAGGAAGAAAATGAAGAAAA+GGG + chr6_4:9552003-9552022 Msa0975750:CDS 30.0%
AAAGGGTAATTGTAGTTCAA+TGG + chr6_4:9552020-9552039 Msa0975750:CDS 30.0%
ATTGTAGTTCAATGGTGAAA+AGG + chr6_4:9552028-9552047 Msa0975750:CDS 30.0%
AAATGGAAAAGTGATGCATT+TGG + chr6_4:9552095-9552114 Msa0975750:CDS 30.0%
AGAGGATGATAAGAAGAATA+AGG + chr6_4:9552179-9552198 Msa0975750:CDS 30.0%
AGAAGAATAAGGTGATGAAA+TGG + chr6_4:9552190-9552209 Msa0975750:CDS 30.0%
GAAGAATAAGGTGATGAAAT+GGG + chr6_4:9552191-9552210 Msa0975750:CDS 30.0%
!!! AGCACCGACATTTTTTATTA+AGG + chr6_4:9552605-9552624 Msa0975750:intron 30.0%
AAAAACAACCTTATGAAGCA+GGG - chr6_4:9552760-9552779 None:intergenic 30.0%
!!! TTTCTGTGTTTTTTAGAGCT+TGG + chr6_4:9552793-9552812 Msa0975750:intron 30.0%
TTGGAATCATCTAGTACTAT+TGG + chr6_4:9552812-9552831 Msa0975750:intron 30.0%
CATAATGCTATTGTAGCAAA+GGG + chr6_4:9552987-9553006 Msa0975750:intron 30.0%
ATAATGCTATTGTAGCAAAG+GGG + chr6_4:9552988-9553007 Msa0975750:intron 30.0%
AGAAGAACAATTGATGAAGA+AGG + chr6_4:9553020-9553039 Msa0975750:CDS 30.0%
AGCATATGCACTTTAAACTA+AGG - chr6_4:9553150-9553169 None:intergenic 30.0%
GTAATGTGTTAACTAAGCAT+AGG + chr6_4:9553219-9553238 Msa0975750:intron 30.0%
CTATATCCATAATTGCATGA+TGG - chr6_4:9553289-9553308 None:intergenic 30.0%
!! TCATCACTGATTTAAGCTAT+TGG - chr6_4:9553318-9553337 None:intergenic 30.0%
CTAAAATCATACCACATGAT+GGG - chr6_4:9553403-9553422 None:intergenic 30.0%
! TCTAAAATCATACCACATGA+TGG - chr6_4:9553404-9553423 None:intergenic 30.0%
! TCAAGACAGTGTTTTATCAT+TGG - chr6_4:9553766-9553785 None:intergenic 30.0%
TATCGAGTAAATTCAGTTTC+AGG + chr6_4:9553801-9553820 Msa0975750:intron 30.0%
CAAATCTGTGATAATTCTGT+TGG + chr6_4:9553905-9553924 Msa0975750:intron 30.0%
TCATATTATGCTTAGGCTAA+TGG - chr6_4:9553945-9553964 None:intergenic 30.0%
GATTCAATCATCTTCATGTT+AGG - chr6_4:9554036-9554055 None:intergenic 30.0%
CATGATGTGTAAAACTAAAG+GGG - chr6_4:9554247-9554266 None:intergenic 30.0%
TTTGATAGAACAGCAGAAAA+TGG + chr6_4:9554317-9554336 Msa0975750:CDS 30.0%
AATCTCATAATGAACACTCT+TGG + chr6_4:9554574-9554593 Msa0975750:intron 30.0%
CATAACACAGTTATTGATCT+TGG + chr6_4:9554651-9554670 Msa0975750:intron 30.0%
TCATTCGATCTCAAAATCAA+TGG + chr6_4:9554674-9554693 Msa0975750:intron 30.0%
ACACACACTTTAATTGATCT+CGG - chr6_4:9554764-9554783 None:intergenic 30.0%
!!! TTTGGTTCTTTTGGTATAGT+TGG - chr6_4:9554882-9554901 None:intergenic 30.0%
!!! ATGTGAAACTTTGGTTCTTT+TGG - chr6_4:9554891-9554910 None:intergenic 30.0%
GTTCACATTCTCAGTTTCTA+AGG - chr6_4:9551581-9551600 None:intergenic 35.0%
GATCAAAGTCCTAAGAAAAC+GGG + chr6_4:9551739-9551758 Msa0975750:CDS 35.0%
! TTACACAAACCCGTTTTCTT+AGG - chr6_4:9551751-9551770 None:intergenic 35.0%
! AAAACGGGTTTGTGTAAATG+TGG + chr6_4:9551754-9551773 Msa0975750:CDS 35.0%
AGTTTGAGAGAATCACAAGA+AGG + chr6_4:9551820-9551839 Msa0975750:CDS 35.0%
GTTTGAGAGAATCACAAGAA+GGG + chr6_4:9551821-9551840 Msa0975750:CDS 35.0%
AGGAATAGTGTACCTGAAAA+TGG + chr6_4:9552078-9552097 Msa0975750:CDS 35.0%
!! TGCATCACTTTTCCATTTTC+AGG - chr6_4:9552093-9552112 None:intergenic 35.0%
! AAAAGTGATGCATTTGGTGA+AGG + chr6_4:9552101-9552120 Msa0975750:CDS 35.0%
GCAATTTCAACAACCTGTTA+AGG + chr6_4:9552227-9552246 Msa0975750:CDS 35.0%
TTTCAACAACCTGTTAAGGA+TGG + chr6_4:9552231-9552250 Msa0975750:CDS 35.0%
ACTTTGACATCTGAACAACT+TGG + chr6_4:9552306-9552325 Msa0975750:CDS 35.0%
! AACAACTTGGATTGGATCAA+AGG + chr6_4:9552319-9552338 Msa0975750:CDS 35.0%
! ACAACTTGGATTGGATCAAA+GGG + chr6_4:9552320-9552339 Msa0975750:CDS 35.0%
GGTTTCAGTTACATCTTCTT+GGG + chr6_4:9552341-9552360 Msa0975750:CDS 35.0%
CAAAAACAACCTTATGAAGC+AGG - chr6_4:9552761-9552780 None:intergenic 35.0%
GAATCATCTAGTACTATTGG+AGG + chr6_4:9552815-9552834 Msa0975750:intron 35.0%
CCTTTGCTACAATAGCATTA+TGG - chr6_4:9552989-9553008 None:intergenic 35.0%
CCATAATGCTATTGTAGCAA+AGG + chr6_4:9552986-9553005 Msa0975750:intron 35.0%
ATGAGAATTCCTATTGCACA+AGG + chr6_4:9553072-9553091 Msa0975750:CDS 35.0%
GATTGTCCATCATGCAATTA+TGG + chr6_4:9553280-9553299 Msa0975750:intron 35.0%
!! ATGATCATTTTTGCTCTTGC+TGG + chr6_4:9553704-9553723 Msa0975750:intron 35.0%
!! TGATCATTTTTGCTCTTGCT+GGG + chr6_4:9553705-9553724 Msa0975750:intron 35.0%
TTGTTTGGCTACCCTTAATA+AGG + chr6_4:9553728-9553747 Msa0975750:intron 35.0%
ACTCGATATCAGCTGATATA+CGG - chr6_4:9553789-9553808 None:intergenic 35.0%
ATTGAGGCAAACTCAGAAAA+TGG - chr6_4:9553873-9553892 None:intergenic 35.0%
AATGAAGGTTCAATGCAGTT+AGG - chr6_4:9553985-9554004 None:intergenic 35.0%
AAGTTCACTAAGTCAATCTC+AGG - chr6_4:9554010-9554029 None:intergenic 35.0%
!! ATAATTCTGTTGGTAGCTTC+TGG + chr6_4:9554060-9554079 Msa0975750:intron 35.0%
TGAAGCTTCATAGTGATTTG+AGG + chr6_4:9554161-9554180 Msa0975750:CDS 35.0%
GAAGCTTCATAGTGATTTGA+GGG + chr6_4:9554162-9554181 Msa0975750:CDS 35.0%
GTAAAACTAAAGGGGAAAGA+AGG - chr6_4:9554239-9554258 None:intergenic 35.0%
TGATGAATGCTTAACTGTGT+AGG + chr6_4:9554278-9554297 Msa0975750:intron 35.0%
AGAACAGCAGAAAATGGAAA+TGG + chr6_4:9554323-9554342 Msa0975750:CDS 35.0%
AGCAGAAAATGGAAATGGAA+AGG + chr6_4:9554328-9554347 Msa0975750:CDS 35.0%
AGAAACATGGTAACTCAATC+AGG - chr6_4:9554403-9554422 None:intergenic 35.0%
TATATATATGCCCTTACAGC+TGG + chr6_4:9554447-9554466 Msa0975750:intron 35.0%
TCTGGCGTATTATTGAGATT+CGG + chr6_4:9554603-9554622 Msa0975750:intron 35.0%
GATCAATAACTGTGTTATGC+AGG - chr6_4:9554650-9554669 None:intergenic 35.0%
GATCTCAAAATCAATGGCAA+AGG + chr6_4:9554680-9554699 Msa0975750:intron 35.0%
TCAAGCACTTGATCTTCTTA+TGG - chr6_4:9554920-9554939 None:intergenic 35.0%
TCTAAGGGTTTCTTCTTCTC+TGG - chr6_4:9551565-9551584 None:intergenic 40.0%
!! ACGTGAAAGTGTTCTTGATG+AGG + chr6_4:9551909-9551928 Msa0975750:CDS 40.0%
AAGGAGAAGAGAGAGAGTAA+TGG + chr6_4:9552047-9552066 Msa0975750:CDS 40.0%
! AGAGAGTAATGGAAGAAGCA+AGG + chr6_4:9552058-9552077 Msa0975750:CDS 40.0%
!! ATTTGGTGAAGGCTTTTGAG+AGG + chr6_4:9552112-9552131 Msa0975750:CDS 40.0%
AAGGGAGAAAGAGAAGAATG+AGG + chr6_4:9552149-9552168 Msa0975750:intron 40.0%
GAAAGAGAAGAATGAGGAAG+AGG + chr6_4:9552155-9552174 Msa0975750:CDS 40.0%
GGTTGTTGAAATTGCAATCC+TGG - chr6_4:9552222-9552241 None:intergenic 40.0%
TGTTCATCACCATCCTTAAC+AGG - chr6_4:9552243-9552262 None:intergenic 40.0%
! GAAGCTGTTTGTGATGATGA+TGG + chr6_4:9552267-9552286 Msa0975750:CDS 40.0%
GACATCTGAACAACTTGGAT+TGG + chr6_4:9552311-9552330 Msa0975750:CDS 40.0%
GGGTTTCAGTTACATCTTCT+TGG + chr6_4:9552340-9552359 Msa0975750:CDS 40.0%
GTTACATCTTCTTGGGATTG+TGG + chr6_4:9552348-9552367 Msa0975750:CDS 40.0%
ACAAACACAGACACAGATAC+TGG - chr6_4:9552735-9552754 None:intergenic 40.0%
CATCTAGTACTATTGGAGGA+AGG + chr6_4:9552819-9552838 Msa0975750:intron 40.0%
GTCAGAAACCTTTCAAGCTA+AGG + chr6_4:9552876-9552895 Msa0975750:CDS 40.0%
!! TGGCTATATTGGTGATGCAT+TGG + chr6_4:9552963-9552982 Msa0975750:intron 40.0%
TCAGGTTCATCAATAGTCCA+TGG - chr6_4:9553102-9553121 None:intergenic 40.0%
! ATGGACTATTGATGAACCTG+AGG + chr6_4:9553101-9553120 Msa0975750:CDS 40.0%
CTATTGATGAACCTGAGGTA+AGG + chr6_4:9553106-9553125 Msa0975750:intron 40.0%
TGAGAAAATGACCTTACCTC+AGG - chr6_4:9553120-9553139 None:intergenic 40.0%
GATGGACAATCAGAGACTAA+TGG - chr6_4:9553271-9553290 None:intergenic 40.0%
GTACTTTACAACCCATCATG+TGG + chr6_4:9553389-9553408 Msa0975750:intron 40.0%
TCCTAGCATTACACATGACA+AGG + chr6_4:9553599-9553618 Msa0975750:intron 40.0%
TCCTTGTCATGTGTAATGCT+AGG - chr6_4:9553603-9553622 None:intergenic 40.0%
TGGCTACCCTTAATAAGGTT+AGG + chr6_4:9553733-9553752 Msa0975750:intron 40.0%
AGTCAATCTCAGGCTAATGA+AGG - chr6_4:9554000-9554019 None:intergenic 40.0%
CTATGAAGCTTCACGTCAAT+AGG - chr6_4:9554154-9554173 None:intergenic 40.0%
GCTGAATTTGATCATCAGGT+AGG + chr6_4:9554196-9554215 Msa0975750:intron 40.0%
TGAATGCTTAACTGTGTAGG+TGG + chr6_4:9554281-9554300 Msa0975750:intron 40.0%
GGAAATGGAAAGGCAACAAA+AGG + chr6_4:9554338-9554357 Msa0975750:CDS 40.0%
GGTCTGTCAAAATAAGGCAT+TGG - chr6_4:9554526-9554545 None:intergenic 40.0%
TTGACAGACCATTTATTCCG+AGG + chr6_4:9554536-9554555 Msa0975750:CDS 40.0%
CATTACCTCCTCGGAATAAA+TGG - chr6_4:9554547-9554566 None:intergenic 40.0%
CATTTATTCCGAGGAGGTAA+TGG + chr6_4:9554545-9554564 Msa0975750:intron 40.0%
TTGATCAACCATTACCTCCT+CGG - chr6_4:9554556-9554575 None:intergenic 40.0%
! GAACACTCTTGGAAGTTTTC+TGG + chr6_4:9554585-9554604 Msa0975750:intron 40.0%
TGGTGAGGTATGTGAAACTT+TGG - chr6_4:9554900-9554919 None:intergenic 40.0%
CACTTGATCTTCTTATGGTG+AGG - chr6_4:9554915-9554934 None:intergenic 40.0%
CTTCAACTGAGAGAATTCAG+AGG + chr6_4:9554971-9554990 Msa0975750:intron 40.0%
!! GAGAATGTTGATGATTCCAC+AGG + chr6_4:9555006-9555025 Msa0975750:intron 40.0%
CTCTGACGAATTCTCTTCTG+CGG - chr6_4:9551688-9551707 None:intergenic 45.0%
AGTGTGTTTGCGAAGCGTAT+CGG + chr6_4:9551797-9551816 Msa0975750:intron 45.0%
GAAGAATGAGGAAGAGGAAG+AGG + chr6_4:9552161-9552180 Msa0975750:CDS 45.0%
GTGATGAAATGGGCATTACC+AGG + chr6_4:9552201-9552220 Msa0975750:CDS 45.0%
GTGTGTAGCAGGAATTCTTC+TGG + chr6_4:9552515-9552534 Msa0975750:intron 45.0%
TGTAGCAGGAATTCTTCTGG+TGG + chr6_4:9552518-9552537 Msa0975750:intron 45.0%
GTTTGTGTCCCTGCTTCATA+AGG + chr6_4:9552749-9552768 Msa0975750:intron 45.0%
CTAGTACTATTGGAGGAAGG+AGG + chr6_4:9552822-9552841 Msa0975750:intron 45.0%
ACCTTTCAAGCTAAGGACTG+AGG + chr6_4:9552883-9552902 Msa0975750:CDS 45.0%
! ACCTCAGTCCTTAGCTTGAA+AGG - chr6_4:9552887-9552906 None:intergenic 45.0%
CATGGAAGACCTTGTGCAAT+AGG - chr6_4:9553084-9553103 None:intergenic 45.0%
CTATTGCACAAGGTCTTCCA+TGG + chr6_4:9553082-9553101 Msa0975750:CDS 45.0%
TTTGCTCTTGCTGGGTTGTT+TGG + chr6_4:9553713-9553732 Msa0975750:intron 45.0%
TTTGTGCTTTCTTTCACCGG+AGG - chr6_4:9554130-9554149 None:intergenic 45.0%
! GGCTTTGTGCTTTCTTTCAC+CGG - chr6_4:9554133-9554152 None:intergenic 45.0%
TCGCGCTGAATTTGATCATC+AGG + chr6_4:9554192-9554211 Msa0975750:CDS 45.0%
ACAGACCATTTATTCCGAGG+AGG + chr6_4:9554539-9554558 Msa0975750:CDS 45.0%
! ACGTGCATTTTGCACTGTTG+TGG + chr6_4:9554787-9554806 Msa0975750:intron 45.0%
TCACATCAGCAAATGACCTG+TGG - chr6_4:9555025-9555044 None:intergenic 45.0%
! CGATGAAGAAGAAGGCGTAG+AGG + chr6_4:9551984-9552003 Msa0975750:CDS 50.0%
TCTTCTTGGGATTGTGGCAG+TGG + chr6_4:9552354-9552373 Msa0975750:CDS 50.0%
TCTTGTGCAGTGTGTGTAGC+AGG + chr6_4:9552504-9552523 Msa0975750:intron 50.0%
GTACTATTGGAGGAAGGAGG+TGG + chr6_4:9552825-9552844 Msa0975750:intron 50.0%
! GCAGTGCTTGCTAAAACCTC+CGG + chr6_4:9554111-9554130 Msa0975750:intron 50.0%
TCCTCTTCAGCCAGCTGTAA+GGG - chr6_4:9554460-9554479 None:intergenic 50.0%
TTCCTCTTCAGCCAGCTGTA+AGG - chr6_4:9554461-9554480 None:intergenic 50.0%
!! TAAGGCATTGGCTGCGCTTT+AGG - chr6_4:9554514-9554533 None:intergenic 50.0%
GGGATTGTGGCAGTGGAAGA+AGG + chr6_4:9552361-9552380 Msa0975750:CDS 55.0%
!! CATGTCTCGGTGTCAGACAC+CGG - chr6_4:9552636-9552655 None:intergenic 55.0%
GCCCTTACAGCTGGCTGAAG+AGG + chr6_4:9554456-9554475 Msa0975750:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 9551556 9555068 9551556 ID=Msa0975750;Name=Msa0975750
chr6_4 mRNA 9551556 9555068 9551556 ID=Msa0975750-mRNA-1;Parent=Msa0975750;Name=Msa0975750-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.6|0.54|1|0.4|0.27|11|58|441
chr6_4 exon 9551556 9551793 9551556 ID=Msa0975750-mRNA-1:exon:3420;Parent=Msa0975750-mRNA-1
chr6_4 exon 9551812 9551964 9551812 ID=Msa0975750-mRNA-1:exon:3421;Parent=Msa0975750-mRNA-1
chr6_4 exon 9551974 9552133 9551974 ID=Msa0975750-mRNA-1:exon:3422;Parent=Msa0975750-mRNA-1
chr6_4 exon 9552152 9552382 9552152 ID=Msa0975750-mRNA-1:exon:3423;Parent=Msa0975750-mRNA-1
chr6_4 exon 9552841 9552904 9552841 ID=Msa0975750-mRNA-1:exon:3424;Parent=Msa0975750-mRNA-1
chr6_4 exon 9553003 9553122 9553003 ID=Msa0975750-mRNA-1:exon:3425;Parent=Msa0975750-mRNA-1
chr6_4 exon 9554115 9554213 9554115 ID=Msa0975750-mRNA-1:exon:3426;Parent=Msa0975750-mRNA-1
chr6_4 exon 9554300 9554359 9554300 ID=Msa0975750-mRNA-1:exon:3427;Parent=Msa0975750-mRNA-1
chr6_4 exon 9554466 9554560 9554466 ID=Msa0975750-mRNA-1:exon:3428;Parent=Msa0975750-mRNA-1
chr6_4 exon 9554866 9554969 9554866 ID=Msa0975750-mRNA-1:exon:3429;Parent=Msa0975750-mRNA-1
chr6_4 exon 9555009 9555068 9555009 ID=Msa0975750-mRNA-1:exon:3430;Parent=Msa0975750-mRNA-1
chr6_4 CDS 9551556 9551793 9551556 ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1
chr6_4 CDS 9551812 9551964 9551812 ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1
chr6_4 CDS 9551974 9552133 9551974 ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1
chr6_4 CDS 9552152 9552382 9552152 ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1
chr6_4 CDS 9552841 9552904 9552841 ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1
chr6_4 CDS 9553003 9553122 9553003 ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1
chr6_4 CDS 9554115 9554213 9554115 ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1
chr6_4 CDS 9554300 9554359 9554300 ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1
chr6_4 CDS 9554466 9554560 9554466 ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1
chr6_4 CDS 9554866 9554969 9554866 ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1
chr6_4 CDS 9555009 9555010 9555009 ID=Msa0975750-mRNA-1:cds;Parent=Msa0975750-mRNA-1
chr6_4 three_prime_UTR 9555011 9555068 9555011 ID=Msa0975750-mRNA-1:three_prime_utr;Parent=Msa0975750-mRNA-1
Gene Sequence

>Msa0975750

ATGACACCAGAGAAGAAGAAACCCTTAGAAACTGAGAATGTGAACCCTAATGAGTTTTCTAATCGAAACCCACTTCAGAAATCGTTGAATAAAGGTGAGAATAATTGTGTTAATGTTGTTGTTGTTTCGCCGCAGAAGAGAATTCGTCAGAGAAAGTTTGTTGTTGCAAAGAAGAAGAAGAATGATCAAAGTCCTAAGAAAACGGGTTTGTGTAAATGTGGAGAAAATAGTGATGGAACGTATCGGAGTTTGAGAGAATCACAAGAAGGGTTTTTCGAAAAAGAGAATTTTTTGGTTGATGAAGAGAAGAAAAGTGAAGAAAATGATGAAGAGAAACGTGAAAGTGTTCTTGATGAGGTTATTGAAGCAAATTTGATTATTCATGATATTGAAAGAAAAATCGATGAAGAAGAAGGCGTAGAGGAAGAAAATGAAGAAAAGGGTAATTGTAGTTCAATGGTGAAAAGGAGAAGAGAGAGAGTAATGGAAGAAGCAAGGAATAGTGTACCTGAAAATGGAAAAGTGATGCATTTGGTGAAGGCTTTTGAGAGGGAGAAAGAGAAGAATGAGGAAGAGGAAGAGGATGATAAGAAGAATAAGGTGATGAAATGGGCATTACCAGGATTGCAATTTCAACAACCTGTTAAGGATGGTGATGAACAATCTGAAGCTGTTTGTGATGATGATGGTAGTTTGTTTAATTGTACTTTGACATCTGAACAACTTGGATTGGATCAAAGGGTTTCAGTTACATCTTCTTGGGATTGTGGCAGTGGAAGAAGGAGGTGGAAGAAGAAGCAGAAGCTAAAAGTCACTAGTCAGAAACCTTTCAAGCTAAGGACTGAGCAAAGGGGAAAGATGAAAGAAGAACAATTGATGAAGAAGGTAAAAGAGATTTTGACAGAAGAAGAGAAGATGAGAATTCCTATTGCACAAGGTCTTCCATGGACTATTGATGAACCTGAGTGCTTGCTAAAACCTCCGGTGAAAGAAAGCACAAAGCCTATTGACGTGAAGCTTCATAGTGATTTGAGGGCAATTGATCGCGCTGAATTTGATCATCAGGTGGCTGAAAAATTGAGTTTGATAGAACAGCAGAAAATGGAAATGGAAAGGCAACAAAAGCTGGCTGAAGAGGAAGAAATTAGAAGATTAAGGAAGGAACTCATTCCTAAAGCGCAGCCAATGCCTTATTTTGACAGACCATTTATTCCGAGGAGGTCAATGAAGAATCCAACTATACCAAAAGAACCAAAGTTTCACATACCTCACCATAAGAAGATCAAGTGCTTGACATTAAATGAAATGAGATCATACTCTTCATAA

Protein sequence

>Msa0975750

MTPEKKKPLETENVNPNEFSNRNPLQKSLNKGENNCVNVVVVSPQKRIRQRKFVVAKKKKNDQSPKKTGLCKCGENSDGTYRSLRESQEGFFEKENFLVDEEKKSEENDEEKRESVLDEVIEANLIIHDIERKIDEEEGVEEENEEKGNCSSMVKRRRERVMEEARNSVPENGKVMHLVKAFEREKEKNEEEEEDDKKNKVMKWALPGLQFQQPVKDGDEQSEAVCDDDGSLFNCTLTSEQLGLDQRVSVTSSWDCGSGRRRWKKKQKLKVTSQKPFKLRTEQRGKMKEEQLMKKVKEILTEEEKMRIPIAQGLPWTIDEPECLLKPPVKESTKPIDVKLHSDLRAIDRAEFDHQVAEKLSLIEQQKMEMERQQKLAEEEEIRRLRKELIPKAQPMPYFDRPFIPRRSMKNPTIPKEPKFHIPHHKKIKCLTLNEMRSYSS*