Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1465440 | XP_013468646.1 | 95.667 | 300 | 11 | 2 | 1 | 300 | 1 | 298 | 0.0 | 575 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1465440 | A0A072VML7 | 95.667 | 300 | 11 | 2 | 1 | 300 | 1 | 298 | 0.0 | 575 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0005890 | Msa1465440 | 0.830853 | 2.324181e-55 | -8.615850e-47 |
Msa0008110 | Msa1465440 | 0.818167 | 2.258062e-52 | -8.615850e-47 |
Msa0014990 | Msa1465440 | 0.807469 | 4.978791e-50 | -8.615850e-47 |
Msa0018160 | Msa1465440 | 0.823533 | 1.316147e-53 | -8.615850e-47 |
Msa0021500 | Msa1465440 | 0.972010 | 4.495753e-134 | -8.615850e-47 |
Msa0027280 | Msa1465440 | 0.807661 | 4.532282e-50 | -8.615850e-47 |
Msa0028420 | Msa1465440 | 0.843615 | 1.256897e-58 | -8.615850e-47 |
Msa0032960 | Msa1465440 | -0.813566 | 2.398642e-51 | -8.615850e-47 |
Msa0036870 | Msa1465440 | 0.831694 | 1.443390e-55 | -8.615850e-47 |
Msa0042610 | Msa1465440 | 0.841293 | 5.188266e-58 | -8.615850e-47 |
Msa0052260 | Msa1465440 | 0.800961 | 1.127195e-48 | -8.615850e-47 |
Msa0054690 | Msa1465440 | 0.815643 | 8.322521e-52 | -8.615850e-47 |
Msa0063890 | Msa1465440 | 0.805280 | 1.440570e-49 | -8.615850e-47 |
Msa0081090 | Msa1465440 | 0.805882 | 1.076943e-49 | -8.615850e-47 |
Msa0081520 | Msa1465440 | 0.806512 | 7.934787e-50 | -8.615850e-47 |
Msa0089630 | Msa1465440 | 0.828408 | 9.142024e-55 | -8.615850e-47 |
Msa0090400 | Msa1465440 | 0.833059 | 6.629786e-56 | -8.615850e-47 |
Msa0092790 | Msa1465440 | 0.834506 | 2.881821e-56 | -8.615850e-47 |
Msa0097260 | Msa1465440 | 0.824733 | 6.879401e-54 | -8.615850e-47 |
Msa0101440 | Msa1465440 | 0.806876 | 6.647796e-50 | -8.615850e-47 |
Msa0117480 | Msa1465440 | 0.803614 | 3.204846e-49 | -8.615850e-47 |
Msa1359690 | Msa1465440 | 0.812052 | 5.146859e-51 | -8.615850e-47 |
Msa1369150 | Msa1465440 | 0.800878 | 1.172416e-48 | -8.615850e-47 |
Msa1372230 | Msa1465440 | 0.864882 | 8.827038e-65 | -8.615850e-47 |
Msa1390440 | Msa1465440 | 0.824476 | 7.905635e-54 | -8.615850e-47 |
Msa1392580 | Msa1465440 | 0.802778 | 4.774599e-49 | -8.615850e-47 |
Msa1396030 | Msa1465440 | 0.822080 | 2.868392e-53 | -8.615850e-47 |
Msa1397400 | Msa1465440 | 0.813830 | 2.098371e-51 | -8.615850e-47 |
Msa1398340 | Msa1465440 | 0.826028 | 3.395640e-54 | -8.615850e-47 |
Msa1419370 | Msa1465440 | 0.800221 | 1.595370e-48 | -8.615850e-47 |
Msa1422420 | Msa1465440 | 0.815739 | 7.921596e-52 | -8.615850e-47 |
Msa1440960 | Msa1465440 | 0.837826 | 4.132172e-57 | -8.615850e-47 |
Msa1446820 | Msa1465440 | 0.802680 | 5.000908e-49 | -8.615850e-47 |
Msa1454140 | Msa1465440 | 0.836889 | 7.180704e-57 | -8.615850e-47 |
Msa1459690 | Msa1465440 | 0.801327 | 9.486894e-49 | -8.615850e-47 |
Msa1464810 | Msa1465440 | 0.815428 | 9.291751e-52 | -8.615850e-47 |
Msa0626450 | Msa1465440 | 0.843918 | 1.042425e-58 | -8.615850e-47 |
Msa0626490 | Msa1465440 | 0.844823 | 5.955728e-59 | -8.615850e-47 |
Msa0637560 | Msa1465440 | 0.807680 | 4.490649e-50 | -8.615850e-47 |
Msa0637580 | Msa1465440 | 0.805880 | 1.078026e-49 | -8.615850e-47 |
Msa0639430 | Msa1465440 | 0.805176 | 1.514640e-49 | -8.615850e-47 |
Msa0643300 | Msa1465440 | 0.814846 | 1.251061e-51 | -8.615850e-47 |
Msa0644410 | Msa1465440 | 0.800329 | 1.516845e-48 | -8.615850e-47 |
Msa0651550 | Msa1465440 | 0.806079 | 9.788530e-50 | -8.615850e-47 |
Msa0658880 | Msa1465440 | 0.801146 | 1.033012e-48 | -8.615850e-47 |
Msa0661150 | Msa1465440 | 0.816234 | 6.143197e-52 | -8.615850e-47 |
Msa0664600 | Msa1465440 | 0.840726 | 7.308635e-58 | -8.615850e-47 |
Msa0677410 | Msa1465440 | 0.826891 | 2.114850e-54 | -8.615850e-47 |
Msa0679870 | Msa1465440 | 0.804884 | 1.743449e-49 | -8.615850e-47 |
Msa0683570 | Msa1465440 | 0.850224 | 1.949250e-60 | -8.615850e-47 |
Msa0689520 | Msa1465440 | 0.830569 | 2.727194e-55 | -8.615850e-47 |
Msa0700460 | Msa1465440 | 0.810000 | 1.432382e-50 | -8.615850e-47 |
Msa0704410 | Msa1465440 | 0.811961 | 5.387640e-51 | -8.615850e-47 |
Msa0718550 | Msa1465440 | 0.810136 | 1.339091e-50 | -8.615850e-47 |
Msa0721080 | Msa1465440 | 0.801389 | 9.213828e-49 | -8.615850e-47 |
Msa0730430 | Msa1465440 | 0.802337 | 5.886399e-49 | -8.615850e-47 |
Msa0741220 | Msa1465440 | 0.809435 | 1.895337e-50 | -8.615850e-47 |
Msa0754520 | Msa1465440 | 0.802432 | 5.625545e-49 | -8.615850e-47 |
Msa0761670 | Msa1465440 | 0.812521 | 4.065947e-51 | -8.615850e-47 |
Msa0770720 | Msa1465440 | 0.835099 | 2.043386e-56 | -8.615850e-47 |
Msa0795870 | Msa1465440 | 0.862172 | 6.118303e-64 | -8.615850e-47 |
Msa0824960 | Msa1465440 | 0.804914 | 1.718832e-49 | -8.615850e-47 |
Msa0833650 | Msa1465440 | 0.866578 | 2.572821e-65 | -8.615850e-47 |
Msa0835960 | Msa1465440 | 0.801674 | 8.056143e-49 | -8.615850e-47 |
Msa0124060 | Msa1465440 | 0.840712 | 7.371617e-58 | -8.615850e-47 |
Msa0125550 | Msa1465440 | 0.958685 | 1.276249e-116 | -8.615850e-47 |
Msa0131900 | Msa1465440 | 0.807196 | 5.687396e-50 | -8.615850e-47 |
Msa0136650 | Msa1465440 | 0.812478 | 4.155270e-51 | -8.615850e-47 |
Msa0137880 | Msa1465440 | 0.816979 | 4.182995e-52 | -8.615850e-47 |
Msa0146040 | Msa1465440 | 0.814690 | 1.355164e-51 | -8.615850e-47 |
Msa0158860 | Msa1465440 | 0.802849 | 4.615267e-49 | -8.615850e-47 |
Msa0168500 | Msa1465440 | 0.840320 | 9.334079e-58 | -8.615850e-47 |
Msa0173690 | Msa1465440 | 0.800833 | 1.197430e-48 | -8.615850e-47 |
Msa0173730 | Msa1465440 | 0.803903 | 2.791085e-49 | -8.615850e-47 |
Msa0178560 | Msa1465440 | 0.857854 | 1.229122e-62 | -8.615850e-47 |
Msa0182190 | Msa1465440 | 0.802949 | 4.401006e-49 | -8.615850e-47 |
Msa0182240 | Msa1465440 | 0.813293 | 2.754721e-51 | -8.615850e-47 |
Msa0190570 | Msa1465440 | 0.801267 | 9.759624e-49 | -8.615850e-47 |
Msa0223080 | Msa1465440 | 0.804070 | 2.577555e-49 | -8.615850e-47 |
Msa0225100 | Msa1465440 | 0.806587 | 7.652465e-50 | -8.615850e-47 |
Msa0225460 | Msa1465440 | 0.821401 | 4.116736e-53 | -8.615850e-47 |
Msa0225680 | Msa1465440 | 0.821243 | 4.478877e-53 | -8.615850e-47 |
Msa0225860 | Msa1465440 | 0.839779 | 1.291932e-57 | -8.615850e-47 |
Msa0230740 | Msa1465440 | 0.808821 | 2.565553e-50 | -8.615850e-47 |
Msa1224930 | Msa1465440 | 0.802764 | 4.805397e-49 | -8.615850e-47 |
Msa1232710 | Msa1465440 | 0.804735 | 1.873274e-49 | -8.615850e-47 |
Msa1240770 | Msa1465440 | 0.818311 | 2.093868e-52 | -8.615850e-47 |
Msa1251930 | Msa1465440 | 0.817953 | 2.523681e-52 | -8.615850e-47 |
Msa1269480 | Msa1465440 | 0.823354 | 1.449181e-53 | -8.615850e-47 |
Msa1282260 | Msa1465440 | 0.813487 | 2.497001e-51 | -8.615850e-47 |
Msa1293870 | Msa1465440 | 0.813935 | 1.989464e-51 | -8.615850e-47 |
Msa1297230 | Msa1465440 | 0.810375 | 1.189363e-50 | -8.615850e-47 |
Msa1298220 | Msa1465440 | 0.807942 | 3.950663e-50 | -8.615850e-47 |
Msa1313300 | Msa1465440 | 0.801324 | 9.499859e-49 | -8.615850e-47 |
Msa1321340 | Msa1465440 | 0.831345 | 1.759211e-55 | -8.615850e-47 |
Msa1328710 | Msa1465440 | 0.816865 | 4.435471e-52 | -8.615850e-47 |
Msa1343180 | Msa1465440 | 0.809265 | 2.060562e-50 | -8.615850e-47 |
Msa0371030 | Msa1465440 | 0.811593 | 6.477165e-51 | -8.615850e-47 |
Msa0378720 | Msa1465440 | 0.805153 | 1.531911e-49 | -8.615850e-47 |
Msa0380620 | Msa1465440 | 0.822201 | 2.688220e-53 | -8.615850e-47 |
Msa0386090 | Msa1465440 | 0.809749 | 1.622026e-50 | -8.615850e-47 |
Msa0417880 | Msa1465440 | 0.808579 | 2.889452e-50 | -8.615850e-47 |
Msa0428150 | Msa1465440 | 0.814482 | 1.506452e-51 | -8.615850e-47 |
Msa0430260 | Msa1465440 | 0.809709 | 1.654721e-50 | -8.615850e-47 |
Msa0430300 | Msa1465440 | 0.804712 | 1.893468e-49 | -8.615850e-47 |
Msa0462500 | Msa1465440 | 0.831393 | 1.712146e-55 | -8.615850e-47 |
Msa0464380 | Msa1465440 | 0.823989 | 1.029152e-53 | -8.615850e-47 |
Msa0465410 | Msa1465440 | 0.802018 | 6.847113e-49 | -8.615850e-47 |
Msa0467490 | Msa1465440 | 0.815950 | 7.107488e-52 | -8.615850e-47 |
Msa0474520 | Msa1465440 | 0.801132 | 1.040108e-48 | -8.615850e-47 |
Msa0979730 | Msa1465440 | 0.809559 | 1.782110e-50 | -8.615850e-47 |
Msa1018690 | Msa1465440 | 0.806309 | 8.757918e-50 | -8.615850e-47 |
Msa1019430 | Msa1465440 | 0.809376 | 1.950768e-50 | -8.615850e-47 |
Msa1020670 | Msa1465440 | 0.806132 | 9.542121e-50 | -8.615850e-47 |
Msa1028100 | Msa1465440 | 0.802799 | 4.727046e-49 | -8.615850e-47 |
Msa1045140 | Msa1465440 | 0.839186 | 1.841507e-57 | -8.615850e-47 |
Msa1084960 | Msa1465440 | 0.800828 | 1.199812e-48 | -8.615850e-47 |
Msa1103990 | Msa1465440 | 0.817732 | 2.830863e-52 | -8.615850e-47 |
Msa0239190 | Msa1465440 | 0.814284 | 1.666470e-51 | -8.615850e-47 |
Msa0239570 | Msa1465440 | 0.802135 | 6.477003e-49 | -8.615850e-47 |
Msa0254790 | Msa1465440 | 0.805847 | 1.095226e-49 | -8.615850e-47 |
Msa0255090 | Msa1465440 | 0.818264 | 2.146007e-52 | -8.615850e-47 |
Msa0259380 | Msa1465440 | 0.810887 | 9.218093e-51 | -8.615850e-47 |
Msa0267110 | Msa1465440 | 0.820484 | 6.692885e-53 | -8.615850e-47 |
Msa0287740 | Msa1465440 | 0.817525 | 3.151473e-52 | -8.615850e-47 |
Msa0292330 | Msa1465440 | 0.804509 | 2.087617e-49 | -8.615850e-47 |
Msa0292400 | Msa1465440 | 0.814570 | 1.440695e-51 | -8.615850e-47 |
Msa0298470 | Msa1465440 | 0.846302 | 2.365753e-59 | -8.615850e-47 |
Msa0302160 | Msa1465440 | 0.801641 | 8.181739e-49 | -8.615850e-47 |
Msa0339490 | Msa1465440 | 0.802146 | 6.442974e-49 | -8.615850e-47 |
Msa0340500 | Msa1465440 | 0.810418 | 1.164052e-50 | -8.615850e-47 |
Msa1117920 | Msa1465440 | 0.830007 | 3.741558e-55 | -8.615850e-47 |
Msa1132840 | Msa1465440 | 0.863890 | 1.802242e-64 | -8.615850e-47 |
Msa1140210 | Msa1465440 | 0.825317 | 5.007153e-54 | -8.615850e-47 |
Msa1140220 | Msa1465440 | 0.808587 | 2.878734e-50 | -8.615850e-47 |
Msa1161680 | Msa1465440 | 0.841542 | 4.461253e-58 | -8.615850e-47 |
Msa1177320 | Msa1465440 | 0.811733 | 6.041342e-51 | -8.615850e-47 |
Msa1182860 | Msa1465440 | 0.801934 | 7.122543e-49 | -8.615850e-47 |
Msa1186020 | Msa1465440 | 0.852612 | 4.117745e-61 | -8.615850e-47 |
Msa1192090 | Msa1465440 | 0.802825 | 4.667741e-49 | -8.615850e-47 |
Msa1199570 | Msa1465440 | 0.807098 | 5.967270e-50 | -8.615850e-47 |
Msa1206460 | Msa1465440 | 0.815400 | 9.424587e-52 | -8.615850e-47 |
Msa1208950 | Msa1465440 | 0.810324 | 1.219803e-50 | -8.615850e-47 |
Msa1209460 | Msa1465440 | 0.800123 | 1.670466e-48 | -8.615850e-47 |
Msa1223470 | Msa1465440 | 0.801140 | 1.036413e-48 | -8.615850e-47 |
Msa0520890 | Msa1465440 | 0.807327 | 5.336570e-50 | -8.615850e-47 |
Msa0530780 | Msa1465440 | 0.827425 | 1.575984e-54 | -8.615850e-47 |
Msa0532070 | Msa1465440 | 0.825844 | 3.754959e-54 | -8.615850e-47 |
Msa0545340 | Msa1465440 | 0.824495 | 7.826635e-54 | -8.615850e-47 |
Msa0546500 | Msa1465440 | 0.852191 | 5.426700e-61 | -8.615850e-47 |
Msa0547900 | Msa1465440 | 0.803944 | 2.737784e-49 | -8.615850e-47 |
Msa0548470 | Msa1465440 | 0.815757 | 7.851136e-52 | -8.615850e-47 |
Msa0557460 | Msa1465440 | 0.806527 | 7.877203e-50 | -8.615850e-47 |
Msa0569200 | Msa1465440 | 0.825400 | 4.786227e-54 | -8.615850e-47 |
Msa0580370 | Msa1465440 | 0.864899 | 8.719733e-65 | -8.615850e-47 |
Msa0583830 | Msa1465440 | 0.811110 | 8.245475e-51 | -8.615850e-47 |
Msa0590830 | Msa1465440 | 0.802243 | 6.154009e-49 | -8.615850e-47 |
Msa0597790 | Msa1465440 | 0.805650 | 1.204983e-49 | -8.615850e-47 |
Msa0600930 | Msa1465440 | 0.800949 | 1.133797e-48 | -8.615850e-47 |
Msa0602460 | Msa1465440 | 0.801103 | 1.054270e-48 | -8.615850e-47 |
Msa0896540 | Msa1465440 | 0.804816 | 1.800978e-49 | -8.615850e-47 |
Msa0941190 | Msa1465440 | 0.807322 | 5.349465e-50 | -8.615850e-47 |
Msa0945110 | Msa1465440 | 0.822630 | 2.137864e-53 | -8.615850e-47 |
Msa0960600 | Msa1465440 | 0.801726 | 7.858400e-49 | -8.615850e-47 |
Msa0967870 | Msa1465440 | 0.809501 | 1.834242e-50 | -8.615850e-47 |
Msa0975750 | Msa1465440 | 0.812776 | 3.575171e-51 | -8.615850e-47 |
Msa0975810 | Msa1465440 | 0.801327 | 9.485895e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1465440 | MtrunA17_Chr1g0186341 | 95.667 | 300 | 11 | 2 | 1 | 300 | 1 | 298 | 0.0 | 575 |
Msa1465440 | MtrunA17_Chr1g0183391 | 27.729 | 339 | 187 | 10 | 1 | 299 | 1 | 321 | 1.66e-14 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1465440 | AT2G33400.1 | 29.545 | 308 | 139 | 10 | 1 | 289 | 1 | 249 | 1.82e-24 | 100 |
Msa1465440 | AT5G44040.1 | 33.108 | 296 | 145 | 11 | 30 | 299 | 71 | 339 | 1.06e-18 | 86.3 |
Msa1465440 | AT1G04030.2 | 27.554 | 323 | 177 | 11 | 1 | 286 | 1 | 303 | 7.75e-13 | 68.9 |
Msa1465440 | AT1G04030.1 | 27.554 | 323 | 177 | 11 | 1 | 286 | 1 | 303 | 7.75e-13 | 68.9 |
Find 55 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTAGTTCTTATCAGGTTT+TGG | 0.222472 | tig0045253:+640 | Msa1465440:CDS |
GATGAAAGTTTGGAGAATTA+TGG | 0.268950 | tig0045253:+872 | Msa1465440:CDS |
GGCAAACCCTAGTTCTTATC+AGG | 0.299458 | tig0045253:+634 | Msa1465440:CDS |
ACAAACCTGATTTCAGAATA+TGG | 0.325794 | tig0045253:-437 | None:intergenic |
TTTCTTTCTTTCTCTTTCAA+TGG | 0.327083 | tig0045253:-189 | None:intergenic |
TTGTACCATATTCTGAAATC+AGG | 0.328302 | tig0045253:+432 | Msa1465440:CDS |
TGATGAGGAAGATGAAAATA+AGG | 0.334449 | tig0045253:+670 | Msa1465440:CDS |
ATGAAAGTTTGGAGAATTAT+GGG | 0.338370 | tig0045253:+873 | Msa1465440:CDS |
TTGGGATGATGATGAAAGTT+TGG | 0.373619 | tig0045253:+862 | Msa1465440:CDS |
TTCATTCATTAAAAGTTTGT+TGG | 0.384333 | tig0045253:+1373 | Msa1465440:three_prime_UTR |
TCATTCATTAAAAGTTTGTT+GGG | 0.396716 | tig0045253:+1374 | Msa1465440:three_prime_UTR |
GGAGGATGAAATAGTGTATG+AGG | 0.408167 | tig0045253:+790 | Msa1465440:CDS |
TCAGTCGAAGCCTTTGTTGC+AGG | 0.410456 | tig0045253:+1192 | Msa1465440:CDS |
GAAGTTCTCGCCTTGCGTCT+TGG | 0.432670 | tig0045253:+1156 | Msa1465440:CDS |
AATTTGATGATGGGTATGAT+TGG | 0.438767 | tig0045253:+843 | Msa1465440:CDS |
AACAGTGAACAGAAAGAAGA+TGG | 0.438966 | tig0045253:+917 | Msa1465440:CDS |
TGCTAGTCTTTCAAACTGGT+TGG | 0.449139 | tig0045253:+1228 | Msa1465440:CDS |
GATGATGATGAATTTGATGA+TGG | 0.451253 | tig0045253:+833 | Msa1465440:CDS |
AAGCATGCTGCCTGTAGTCT+TGG | 0.451334 | tig0045253:+1123 | Msa1465440:CDS |
CAACAAAGGCTTCGACTGAA+TGG | 0.464145 | tig0045253:-1188 | None:intergenic |
ACTGCAATTTCCTGCAACAA+AGG | 0.476203 | tig0045253:-1202 | None:intergenic |
TGTTGCAGCTATGCAATTTG+AGG | 0.478704 | tig0045253:+1512 | Msa1465440:three_prime_UTR |
TTGATGCTAGTCTTTCAAAC+TGG | 0.480004 | tig0045253:+1224 | Msa1465440:CDS |
TAGAGGTAGAGATCAAGAAA+AGG | 0.488908 | tig0045253:+544 | Msa1465440:intron |
CATTGAGTAAGATTCTCTAC+CGG | 0.490839 | tig0045253:-1028 | None:intergenic |
CGGTAGAGAATCTTACTCAA+TGG | 0.500520 | tig0045253:+1029 | Msa1465440:CDS |
TTTGAATGTAGAGATGTATG+AGG | 0.505130 | tig0045253:+613 | Msa1465440:CDS |
GAGCTTGATTCCAAGACTAC+AGG | 0.512568 | tig0045253:-1133 | None:intergenic |
ATAAGAAAGAATGTTTATGT+TGG | 0.519157 | tig0045253:-154 | None:intergenic |
GTCAAGTAAACAAACGAGAA+AGG | 0.525056 | tig0045253:+1075 | Msa1465440:CDS |
CATGAATTCCGTTCTGCACC+CGG | 0.525680 | tig0045253:+1009 | Msa1465440:CDS |
TATAATATCTATGATTCGAC+GGG | 0.526124 | tig0045253:-745 | None:intergenic |
TCCAAAACCTGATAAGAACT+AGG | 0.528369 | tig0045253:-641 | None:intergenic |
TTATAATATCTATGATTCGA+CGG | 0.553522 | tig0045253:-746 | None:intergenic |
CCAAAACCTGATAAGAACTA+GGG | 0.562445 | tig0045253:-640 | None:intergenic |
ATTTGATGATGGGTATGATT+GGG | 0.562602 | tig0045253:+844 | Msa1465440:CDS |
GATCAAGAAAAGGAGAAGAG+TGG | 0.564885 | tig0045253:+554 | Msa1465440:CDS |
TTTCTGTTTCTTCAAGCACT+CGG | 0.567496 | tig0045253:-1300 | None:intergenic |
TAGTTATGACAATGAGGAGG+AGG | 0.567704 | tig0045253:+772 | Msa1465440:CDS |
ATGATGATGAATTTGATGAT+GGG | 0.572566 | tig0045253:+834 | Msa1465440:CDS |
ACAGTGAACAGAAAGAAGAT+GGG | 0.578317 | tig0045253:+918 | Msa1465440:CDS |
ATTGAGTAAGATTCTCTACC+GGG | 0.594847 | tig0045253:-1027 | None:intergenic |
CGAATTTGAGTGGACGAGAG+AGG | 0.606574 | tig0045253:+978 | Msa1465440:CDS |
ATTCTCTACCGGGTGCAGAA+CGG | 0.617190 | tig0045253:-1017 | None:intergenic |
TCATTGACAACGAATTGTAG+TGG | 0.620784 | tig0045253:-1272 | None:intergenic |
ACAATTCGTTGTCAATGATG+TGG | 0.639822 | tig0045253:+1277 | Msa1465440:exon |
ATCGAATTGTGATGCTTCTG+TGG | 0.643973 | tig0045253:+1342 | Msa1465440:three_prime_UTR |
TGAAAATAAGGAGACTACTG+TGG | 0.644236 | tig0045253:+682 | Msa1465440:CDS |
TAACTGTAGTTATGACAATG+AGG | 0.650246 | tig0045253:+766 | Msa1465440:CDS |
GCATTCGATTCCAAGACGCA+AGG | 0.653152 | tig0045253:-1166 | None:intergenic |
GAGTTGAAATCGAATTTGAG+TGG | 0.654782 | tig0045253:+968 | Msa1465440:CDS |
GTAGTGGAGACATTATAACT+AGG | 0.665616 | tig0045253:-1256 | None:intergenic |
TGAAAGTTTGGAGAATTATG+GGG | 0.678615 | tig0045253:+874 | Msa1465440:CDS |
ACTGTGGAATCAGAGAGAGA+AGG | 0.685984 | tig0045253:+698 | Msa1465440:CDS |
CTGTAGTTATGACAATGAGG+AGG | 0.688122 | tig0045253:+769 | Msa1465440:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTATTTTATTTGTTAG+AGG | + | tig0045253:527-546 | Msa1465440:intron | 10.0% |
!!! | TTTTTTATTTTATTTGTTAG+AGG | + | tig0045253:527-546 | Msa1465440:intron | 10.0% |
!! | ATAAGAAAGAATGTTTATGT+TGG | - | tig0045253:157-176 | None:intergenic | 20.0% |
!! | AAAGAAAGAAAGAAAGAAAA+TGG | + | tig0045253:201-220 | Msa1465440:exon | 20.0% |
!! | AAGAAAGAAAGAAAGAAAAT+GGG | + | tig0045253:202-221 | Msa1465440:exon | 20.0% |
!! | TGAAGAAATATTATTGTATG+TGG | + | tig0045253:479-498 | Msa1465440:intron | 20.0% |
!! | TTATAATATCTATGATTCGA+CGG | - | tig0045253:749-768 | None:intergenic | 20.0% |
!! | TTCATTCATTAAAAGTTTGT+TGG | + | tig0045253:1373-1392 | Msa1465440:three_prime_UTR | 20.0% |
!!! | TCATTCATTAAAAGTTTGTT+GGG | + | tig0045253:1374-1393 | Msa1465440:three_prime_UTR | 20.0% |
!! | ATAAGAAAGAATGTTTATGT+TGG | - | tig0045253:157-176 | None:intergenic | 20.0% |
!! | AAAGAAAGAAAGAAAGAAAA+TGG | + | tig0045253:201-220 | Msa1465440:exon | 20.0% |
!! | AAGAAAGAAAGAAAGAAAAT+GGG | + | tig0045253:202-221 | Msa1465440:exon | 20.0% |
!! | TGAAGAAATATTATTGTATG+TGG | + | tig0045253:479-498 | Msa1465440:intron | 20.0% |
!! | TTATAATATCTATGATTCGA+CGG | - | tig0045253:749-768 | None:intergenic | 20.0% |
!! | TTCATTCATTAAAAGTTTGT+TGG | + | tig0045253:1373-1392 | Msa1465440:three_prime_UTR | 20.0% |
!!! | TCATTCATTAAAAGTTTGTT+GGG | + | tig0045253:1374-1393 | Msa1465440:three_prime_UTR | 20.0% |
! | TTTCTTTCTTTCTCTTTCAA+TGG | - | tig0045253:192-211 | None:intergenic | 25.0% |
!!! | GTTGTTTTGATATACTTACT+TGG | - | tig0045253:306-325 | None:intergenic | 25.0% |
! | ATCAAGAACTTAAGAATGAT+GGG | - | tig0045253:328-347 | None:intergenic | 25.0% |
! | AATCAAGAACTTAAGAATGA+TGG | - | tig0045253:329-348 | None:intergenic | 25.0% |
!! | CTTATCTTTTTGCAGAAATA+TGG | + | tig0045253:371-390 | Msa1465440:intron | 25.0% |
! | TATAATATCTATGATTCGAC+GGG | - | tig0045253:748-767 | None:intergenic | 25.0% |
!! | ATGATGATGAATTTGATGAT+GGG | + | tig0045253:834-853 | Msa1465440:CDS | 25.0% |
! | ATGAAAGTTTGGAGAATTAT+GGG | + | tig0045253:873-892 | Msa1465440:CDS | 25.0% |
!!! | TCCTGTAATTGTTTTGTTTT+TGG | + | tig0045253:1430-1449 | Msa1465440:three_prime_UTR | 25.0% |
! | ACCAAAAACAAAACAATTAC+AGG | - | tig0045253:1434-1453 | None:intergenic | 25.0% |
!!! | TTTTGTTTTTGGTTTGTGAA+TGG | + | tig0045253:1441-1460 | Msa1465440:three_prime_UTR | 25.0% |
! | TTTCTTTCTTTCTCTTTCAA+TGG | - | tig0045253:192-211 | None:intergenic | 25.0% |
!!! | GTTGTTTTGATATACTTACT+TGG | - | tig0045253:306-325 | None:intergenic | 25.0% |
! | ATCAAGAACTTAAGAATGAT+GGG | - | tig0045253:328-347 | None:intergenic | 25.0% |
! | AATCAAGAACTTAAGAATGA+TGG | - | tig0045253:329-348 | None:intergenic | 25.0% |
!! | CTTATCTTTTTGCAGAAATA+TGG | + | tig0045253:371-390 | Msa1465440:intron | 25.0% |
! | TATAATATCTATGATTCGAC+GGG | - | tig0045253:748-767 | None:intergenic | 25.0% |
!! | ATGATGATGAATTTGATGAT+GGG | + | tig0045253:834-853 | Msa1465440:CDS | 25.0% |
! | ATGAAAGTTTGGAGAATTAT+GGG | + | tig0045253:873-892 | Msa1465440:CDS | 25.0% |
!!! | TCCTGTAATTGTTTTGTTTT+TGG | + | tig0045253:1430-1449 | Msa1465440:three_prime_UTR | 25.0% |
! | ACCAAAAACAAAACAATTAC+AGG | - | tig0045253:1434-1453 | None:intergenic | 25.0% |
!!! | TTTTGTTTTTGGTTTGTGAA+TGG | + | tig0045253:1441-1460 | Msa1465440:three_prime_UTR | 25.0% |
!! | TTGTACCATATTCTGAAATC+AGG | + | tig0045253:432-451 | Msa1465440:CDS | 30.0% |
ACAAACCTGATTTCAGAATA+TGG | - | tig0045253:440-459 | None:intergenic | 30.0% | |
TTTGAATGTAGAGATGTATG+AGG | + | tig0045253:613-632 | Msa1465440:CDS | 30.0% | |
TGATGAGGAAGATGAAAATA+AGG | + | tig0045253:670-689 | Msa1465440:CDS | 30.0% | |
TAACTGTAGTTATGACAATG+AGG | + | tig0045253:766-785 | Msa1465440:CDS | 30.0% | |
! | GATGATGATGAATTTGATGA+TGG | + | tig0045253:833-852 | Msa1465440:CDS | 30.0% |
!! | AATTTGATGATGGGTATGAT+TGG | + | tig0045253:843-862 | Msa1465440:CDS | 30.0% |
!! | ATTTGATGATGGGTATGATT+GGG | + | tig0045253:844-863 | Msa1465440:CDS | 30.0% |
GATGAAAGTTTGGAGAATTA+TGG | + | tig0045253:872-891 | Msa1465440:CDS | 30.0% | |
TGAAAGTTTGGAGAATTATG+GGG | + | tig0045253:874-893 | Msa1465440:CDS | 30.0% | |
!! | TTGTACCATATTCTGAAATC+AGG | + | tig0045253:432-451 | Msa1465440:CDS | 30.0% |
ACAAACCTGATTTCAGAATA+TGG | - | tig0045253:440-459 | None:intergenic | 30.0% | |
TTTGAATGTAGAGATGTATG+AGG | + | tig0045253:613-632 | Msa1465440:CDS | 30.0% | |
TGATGAGGAAGATGAAAATA+AGG | + | tig0045253:670-689 | Msa1465440:CDS | 30.0% | |
TAACTGTAGTTATGACAATG+AGG | + | tig0045253:766-785 | Msa1465440:CDS | 30.0% | |
! | GATGATGATGAATTTGATGA+TGG | + | tig0045253:833-852 | Msa1465440:CDS | 30.0% |
!! | AATTTGATGATGGGTATGAT+TGG | + | tig0045253:843-862 | Msa1465440:CDS | 30.0% |
!! | ATTTGATGATGGGTATGATT+GGG | + | tig0045253:844-863 | Msa1465440:CDS | 30.0% |
GATGAAAGTTTGGAGAATTA+TGG | + | tig0045253:872-891 | Msa1465440:CDS | 30.0% | |
TGAAAGTTTGGAGAATTATG+GGG | + | tig0045253:874-893 | Msa1465440:CDS | 30.0% | |
! | TGTCTAAAACAGAAACTCGT+TGG | + | tig0045253:22-41 | Msa1465440:five_prime_UTR | 35.0% |
!! | GGTTGTTTTCTTCAGTGTTT+TGG | + | tig0045253:223-242 | Msa1465440:CDS | 35.0% |
TAGAGGTAGAGATCAAGAAA+AGG | + | tig0045253:544-563 | Msa1465440:intron | 35.0% | |
CCAAAACCTGATAAGAACTA+GGG | - | tig0045253:643-662 | None:intergenic | 35.0% | |
TCCAAAACCTGATAAGAACT+AGG | - | tig0045253:644-663 | None:intergenic | 35.0% | |
TGAAAATAAGGAGACTACTG+TGG | + | tig0045253:682-701 | Msa1465440:CDS | 35.0% | |
! | TTGGGATGATGATGAAAGTT+TGG | + | tig0045253:862-881 | Msa1465440:CDS | 35.0% |
AACAGTGAACAGAAAGAAGA+TGG | + | tig0045253:917-936 | Msa1465440:CDS | 35.0% | |
ACAGTGAACAGAAAGAAGAT+GGG | + | tig0045253:918-937 | Msa1465440:CDS | 35.0% | |
GAGTTGAAATCGAATTTGAG+TGG | + | tig0045253:968-987 | Msa1465440:CDS | 35.0% | |
ATTGAGTAAGATTCTCTACC+GGG | - | tig0045253:1030-1049 | None:intergenic | 35.0% | |
CATTGAGTAAGATTCTCTAC+CGG | - | tig0045253:1031-1050 | None:intergenic | 35.0% | |
GTCAAGTAAACAAACGAGAA+AGG | + | tig0045253:1075-1094 | Msa1465440:CDS | 35.0% | |
!!! | ATGCTTGTTTTTTGCTCTGA+TGG | - | tig0045253:1109-1128 | None:intergenic | 35.0% |
!! | TTGATGCTAGTCTTTCAAAC+TGG | + | tig0045253:1224-1243 | Msa1465440:CDS | 35.0% |
! | GTAGTGGAGACATTATAACT+AGG | - | tig0045253:1259-1278 | None:intergenic | 35.0% |
TCATTGACAACGAATTGTAG+TGG | - | tig0045253:1275-1294 | None:intergenic | 35.0% | |
ACAATTCGTTGTCAATGATG+TGG | + | tig0045253:1277-1296 | Msa1465440:exon | 35.0% | |
! | TTTCTGTTTCTTCAAGCACT+CGG | - | tig0045253:1303-1322 | None:intergenic | 35.0% |
! | TGTCTAAAACAGAAACTCGT+TGG | + | tig0045253:22-41 | Msa1465440:five_prime_UTR | 35.0% |
!! | GGTTGTTTTCTTCAGTGTTT+TGG | + | tig0045253:223-242 | Msa1465440:CDS | 35.0% |
TAGAGGTAGAGATCAAGAAA+AGG | + | tig0045253:544-563 | Msa1465440:intron | 35.0% | |
CCAAAACCTGATAAGAACTA+GGG | - | tig0045253:643-662 | None:intergenic | 35.0% | |
TCCAAAACCTGATAAGAACT+AGG | - | tig0045253:644-663 | None:intergenic | 35.0% | |
TGAAAATAAGGAGACTACTG+TGG | + | tig0045253:682-701 | Msa1465440:CDS | 35.0% | |
! | TTGGGATGATGATGAAAGTT+TGG | + | tig0045253:862-881 | Msa1465440:CDS | 35.0% |
AACAGTGAACAGAAAGAAGA+TGG | + | tig0045253:917-936 | Msa1465440:CDS | 35.0% | |
ACAGTGAACAGAAAGAAGAT+GGG | + | tig0045253:918-937 | Msa1465440:CDS | 35.0% | |
GAGTTGAAATCGAATTTGAG+TGG | + | tig0045253:968-987 | Msa1465440:CDS | 35.0% | |
ATTGAGTAAGATTCTCTACC+GGG | - | tig0045253:1030-1049 | None:intergenic | 35.0% | |
CATTGAGTAAGATTCTCTAC+CGG | - | tig0045253:1031-1050 | None:intergenic | 35.0% | |
GTCAAGTAAACAAACGAGAA+AGG | + | tig0045253:1075-1094 | Msa1465440:CDS | 35.0% | |
!!! | ATGCTTGTTTTTTGCTCTGA+TGG | - | tig0045253:1109-1128 | None:intergenic | 35.0% |
!! | TTGATGCTAGTCTTTCAAAC+TGG | + | tig0045253:1224-1243 | Msa1465440:CDS | 35.0% |
! | GTAGTGGAGACATTATAACT+AGG | - | tig0045253:1259-1278 | None:intergenic | 35.0% |
TCATTGACAACGAATTGTAG+TGG | - | tig0045253:1275-1294 | None:intergenic | 35.0% | |
ACAATTCGTTGTCAATGATG+TGG | + | tig0045253:1277-1296 | Msa1465440:exon | 35.0% | |
! | TTTCTGTTTCTTCAAGCACT+CGG | - | tig0045253:1303-1322 | None:intergenic | 35.0% |
!!! | GACAGAGTTTTAAAGCCGTT+TGG | - | tig0045253:50-69 | None:intergenic | 40.0% |
!! | TTACTTGGTTTTCTCCAGCT+AGG | - | tig0045253:291-310 | None:intergenic | 40.0% |
! | ATTGTATGTGGTTCTGTGAG+TGG | + | tig0045253:491-510 | Msa1465440:intron | 40.0% |
GATCAAGAAAAGGAGAAGAG+TGG | + | tig0045253:554-573 | Msa1465440:CDS | 40.0% | |
!! | CCCTAGTTCTTATCAGGTTT+TGG | + | tig0045253:640-659 | Msa1465440:CDS | 40.0% |
!!! | GGTTTTGGATGATGATGATG+AGG | + | tig0045253:655-674 | Msa1465440:CDS | 40.0% |
CTGTAGTTATGACAATGAGG+AGG | + | tig0045253:769-788 | Msa1465440:CDS | 40.0% | |
TAGTTATGACAATGAGGAGG+AGG | + | tig0045253:772-791 | Msa1465440:CDS | 40.0% | |
GGAGGATGAAATAGTGTATG+AGG | + | tig0045253:790-809 | Msa1465440:CDS | 40.0% | |
CGGTAGAGAATCTTACTCAA+TGG | + | tig0045253:1029-1048 | Msa1465440:CDS | 40.0% | |
ACTGCAATTTCCTGCAACAA+AGG | - | tig0045253:1205-1224 | None:intergenic | 40.0% | |
!! | TGCTAGTCTTTCAAACTGGT+TGG | + | tig0045253:1228-1247 | Msa1465440:CDS | 40.0% |
ATCGAATTGTGATGCTTCTG+TGG | + | tig0045253:1342-1361 | Msa1465440:three_prime_UTR | 40.0% | |
CATGTTGCAGCTATGCAATT+TGG | + | tig0045253:1510-1529 | Msa1465440:three_prime_UTR | 40.0% | |
!!! | GACAGAGTTTTAAAGCCGTT+TGG | - | tig0045253:50-69 | None:intergenic | 40.0% |
!! | TTACTTGGTTTTCTCCAGCT+AGG | - | tig0045253:291-310 | None:intergenic | 40.0% |
! | ATTGTATGTGGTTCTGTGAG+TGG | + | tig0045253:491-510 | Msa1465440:intron | 40.0% |
GATCAAGAAAAGGAGAAGAG+TGG | + | tig0045253:554-573 | Msa1465440:CDS | 40.0% | |
!! | CCCTAGTTCTTATCAGGTTT+TGG | + | tig0045253:640-659 | Msa1465440:CDS | 40.0% |
!!! | GGTTTTGGATGATGATGATG+AGG | + | tig0045253:655-674 | Msa1465440:CDS | 40.0% |
CTGTAGTTATGACAATGAGG+AGG | + | tig0045253:769-788 | Msa1465440:CDS | 40.0% | |
TAGTTATGACAATGAGGAGG+AGG | + | tig0045253:772-791 | Msa1465440:CDS | 40.0% | |
GGAGGATGAAATAGTGTATG+AGG | + | tig0045253:790-809 | Msa1465440:CDS | 40.0% | |
CGGTAGAGAATCTTACTCAA+TGG | + | tig0045253:1029-1048 | Msa1465440:CDS | 40.0% | |
ACTGCAATTTCCTGCAACAA+AGG | - | tig0045253:1205-1224 | None:intergenic | 40.0% | |
!! | TGCTAGTCTTTCAAACTGGT+TGG | + | tig0045253:1228-1247 | Msa1465440:CDS | 40.0% |
ATCGAATTGTGATGCTTCTG+TGG | + | tig0045253:1342-1361 | Msa1465440:three_prime_UTR | 40.0% | |
AGAAACTCGTTGGAGCCAAA+CGG | + | tig0045253:32-51 | Msa1465440:five_prime_UTR | 45.0% | |
ACTCTCTACAAAGTCCTAGC+TGG | + | tig0045253:274-293 | Msa1465440:CDS | 45.0% | |
! | GGCAAACCCTAGTTCTTATC+AGG | + | tig0045253:634-653 | Msa1465440:CDS | 45.0% |
ACTGTGGAATCAGAGAGAGA+AGG | + | tig0045253:698-717 | Msa1465440:CDS | 45.0% | |
GAGCTTGATTCCAAGACTAC+AGG | - | tig0045253:1136-1155 | None:intergenic | 45.0% | |
CAACAAAGGCTTCGACTGAA+TGG | - | tig0045253:1191-1210 | None:intergenic | 45.0% | |
AGAAACTCGTTGGAGCCAAA+CGG | + | tig0045253:32-51 | Msa1465440:five_prime_UTR | 45.0% | |
ACTCTCTACAAAGTCCTAGC+TGG | + | tig0045253:274-293 | Msa1465440:CDS | 45.0% | |
! | GGCAAACCCTAGTTCTTATC+AGG | + | tig0045253:634-653 | Msa1465440:CDS | 45.0% |
ACTGTGGAATCAGAGAGAGA+AGG | + | tig0045253:698-717 | Msa1465440:CDS | 45.0% | |
GAGCTTGATTCCAAGACTAC+AGG | - | tig0045253:1136-1155 | None:intergenic | 45.0% | |
CAACAAAGGCTTCGACTGAA+TGG | - | tig0045253:1191-1210 | None:intergenic | 45.0% | |
CGAATTTGAGTGGACGAGAG+AGG | + | tig0045253:978-997 | Msa1465440:CDS | 50.0% | |
CATGAATTCCGTTCTGCACC+CGG | + | tig0045253:1009-1028 | Msa1465440:CDS | 50.0% | |
ATTCTCTACCGGGTGCAGAA+CGG | - | tig0045253:1020-1039 | None:intergenic | 50.0% | |
AAGCATGCTGCCTGTAGTCT+TGG | + | tig0045253:1123-1142 | Msa1465440:CDS | 50.0% | |
GCATTCGATTCCAAGACGCA+AGG | - | tig0045253:1169-1188 | None:intergenic | 50.0% | |
TCAGTCGAAGCCTTTGTTGC+AGG | + | tig0045253:1192-1211 | Msa1465440:CDS | 50.0% | |
CGAATTTGAGTGGACGAGAG+AGG | + | tig0045253:978-997 | Msa1465440:CDS | 50.0% | |
CATGAATTCCGTTCTGCACC+CGG | + | tig0045253:1009-1028 | Msa1465440:CDS | 50.0% | |
ATTCTCTACCGGGTGCAGAA+CGG | - | tig0045253:1020-1039 | None:intergenic | 50.0% | |
AAGCATGCTGCCTGTAGTCT+TGG | + | tig0045253:1123-1142 | Msa1465440:CDS | 50.0% | |
GCATTCGATTCCAAGACGCA+AGG | - | tig0045253:1169-1188 | None:intergenic | 50.0% | |
TCAGTCGAAGCCTTTGTTGC+AGG | + | tig0045253:1192-1211 | Msa1465440:CDS | 50.0% | |
GAAGTTCTCGCCTTGCGTCT+TGG | + | tig0045253:1156-1175 | Msa1465440:CDS | 55.0% | |
GAAGTTCTCGCCTTGCGTCT+TGG | + | tig0045253:1156-1175 | Msa1465440:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0045253 | gene | 12 | 1531 | 12 | ID=Msa1465440;Name=Msa1465440 |
tig0045253 | mRNA | 12 | 1531 | 12 | ID=Msa1465440-mRNA-1;Parent=Msa1465440;Name=Msa1465440-mRNA-1;_AED=0.03;_eAED=0.03;_QI=208|1|1|1|1|1|3|237|300 |
tig0045253 | exon | 12 | 306 | 12 | ID=Msa1465440-mRNA-1:exon:24796;Parent=Msa1465440-mRNA-1 |
tig0045253 | exon | 386 | 453 | 386 | ID=Msa1465440-mRNA-1:exon:24797;Parent=Msa1465440-mRNA-1 |
tig0045253 | exon | 547 | 1531 | 547 | ID=Msa1465440-mRNA-1:exon:24798;Parent=Msa1465440-mRNA-1 |
tig0045253 | five_prime_UTR | 12 | 219 | 12 | ID=Msa1465440-mRNA-1:five_prime_utr;Parent=Msa1465440-mRNA-1 |
tig0045253 | CDS | 220 | 306 | 220 | ID=Msa1465440-mRNA-1:cds;Parent=Msa1465440-mRNA-1 |
tig0045253 | CDS | 386 | 453 | 386 | ID=Msa1465440-mRNA-1:cds;Parent=Msa1465440-mRNA-1 |
tig0045253 | CDS | 547 | 1294 | 547 | ID=Msa1465440-mRNA-1:cds;Parent=Msa1465440-mRNA-1 |
tig0045253 | three_prime_UTR | 1295 | 1531 | 1295 | ID=Msa1465440-mRNA-1:three_prime_utr;Parent=Msa1465440-mRNA-1 |
Gene Sequence |
Protein sequence |