AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1465440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465440 MtrunA17_Chr1g0186341 95.667 300 11 2 1 300 1 298 0.0 575
Msa1465440 MtrunA17_Chr1g0183391 27.729 339 187 10 1 299 1 321 1.66e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465440 AT2G33400.1 29.545 308 139 10 1 289 1 249 1.82e-24 100
Msa1465440 AT5G44040.1 33.108 296 145 11 30 299 71 339 1.06e-18 86.3
Msa1465440 AT1G04030.2 27.554 323 177 11 1 286 1 303 7.75e-13 68.9
Msa1465440 AT1G04030.1 27.554 323 177 11 1 286 1 303 7.75e-13 68.9

Find 55 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTAGTTCTTATCAGGTTT+TGG 0.222472 tig0045253:+640 Msa1465440:CDS
GATGAAAGTTTGGAGAATTA+TGG 0.268950 tig0045253:+872 Msa1465440:CDS
GGCAAACCCTAGTTCTTATC+AGG 0.299458 tig0045253:+634 Msa1465440:CDS
ACAAACCTGATTTCAGAATA+TGG 0.325794 tig0045253:-437 None:intergenic
TTTCTTTCTTTCTCTTTCAA+TGG 0.327083 tig0045253:-189 None:intergenic
TTGTACCATATTCTGAAATC+AGG 0.328302 tig0045253:+432 Msa1465440:CDS
TGATGAGGAAGATGAAAATA+AGG 0.334449 tig0045253:+670 Msa1465440:CDS
ATGAAAGTTTGGAGAATTAT+GGG 0.338370 tig0045253:+873 Msa1465440:CDS
TTGGGATGATGATGAAAGTT+TGG 0.373619 tig0045253:+862 Msa1465440:CDS
TTCATTCATTAAAAGTTTGT+TGG 0.384333 tig0045253:+1373 Msa1465440:three_prime_UTR
TCATTCATTAAAAGTTTGTT+GGG 0.396716 tig0045253:+1374 Msa1465440:three_prime_UTR
GGAGGATGAAATAGTGTATG+AGG 0.408167 tig0045253:+790 Msa1465440:CDS
TCAGTCGAAGCCTTTGTTGC+AGG 0.410456 tig0045253:+1192 Msa1465440:CDS
GAAGTTCTCGCCTTGCGTCT+TGG 0.432670 tig0045253:+1156 Msa1465440:CDS
AATTTGATGATGGGTATGAT+TGG 0.438767 tig0045253:+843 Msa1465440:CDS
AACAGTGAACAGAAAGAAGA+TGG 0.438966 tig0045253:+917 Msa1465440:CDS
TGCTAGTCTTTCAAACTGGT+TGG 0.449139 tig0045253:+1228 Msa1465440:CDS
GATGATGATGAATTTGATGA+TGG 0.451253 tig0045253:+833 Msa1465440:CDS
AAGCATGCTGCCTGTAGTCT+TGG 0.451334 tig0045253:+1123 Msa1465440:CDS
CAACAAAGGCTTCGACTGAA+TGG 0.464145 tig0045253:-1188 None:intergenic
ACTGCAATTTCCTGCAACAA+AGG 0.476203 tig0045253:-1202 None:intergenic
TGTTGCAGCTATGCAATTTG+AGG 0.478704 tig0045253:+1512 Msa1465440:three_prime_UTR
TTGATGCTAGTCTTTCAAAC+TGG 0.480004 tig0045253:+1224 Msa1465440:CDS
TAGAGGTAGAGATCAAGAAA+AGG 0.488908 tig0045253:+544 Msa1465440:intron
CATTGAGTAAGATTCTCTAC+CGG 0.490839 tig0045253:-1028 None:intergenic
CGGTAGAGAATCTTACTCAA+TGG 0.500520 tig0045253:+1029 Msa1465440:CDS
TTTGAATGTAGAGATGTATG+AGG 0.505130 tig0045253:+613 Msa1465440:CDS
GAGCTTGATTCCAAGACTAC+AGG 0.512568 tig0045253:-1133 None:intergenic
ATAAGAAAGAATGTTTATGT+TGG 0.519157 tig0045253:-154 None:intergenic
GTCAAGTAAACAAACGAGAA+AGG 0.525056 tig0045253:+1075 Msa1465440:CDS
CATGAATTCCGTTCTGCACC+CGG 0.525680 tig0045253:+1009 Msa1465440:CDS
TATAATATCTATGATTCGAC+GGG 0.526124 tig0045253:-745 None:intergenic
TCCAAAACCTGATAAGAACT+AGG 0.528369 tig0045253:-641 None:intergenic
TTATAATATCTATGATTCGA+CGG 0.553522 tig0045253:-746 None:intergenic
CCAAAACCTGATAAGAACTA+GGG 0.562445 tig0045253:-640 None:intergenic
ATTTGATGATGGGTATGATT+GGG 0.562602 tig0045253:+844 Msa1465440:CDS
GATCAAGAAAAGGAGAAGAG+TGG 0.564885 tig0045253:+554 Msa1465440:CDS
TTTCTGTTTCTTCAAGCACT+CGG 0.567496 tig0045253:-1300 None:intergenic
TAGTTATGACAATGAGGAGG+AGG 0.567704 tig0045253:+772 Msa1465440:CDS
ATGATGATGAATTTGATGAT+GGG 0.572566 tig0045253:+834 Msa1465440:CDS
ACAGTGAACAGAAAGAAGAT+GGG 0.578317 tig0045253:+918 Msa1465440:CDS
ATTGAGTAAGATTCTCTACC+GGG 0.594847 tig0045253:-1027 None:intergenic
CGAATTTGAGTGGACGAGAG+AGG 0.606574 tig0045253:+978 Msa1465440:CDS
ATTCTCTACCGGGTGCAGAA+CGG 0.617190 tig0045253:-1017 None:intergenic
TCATTGACAACGAATTGTAG+TGG 0.620784 tig0045253:-1272 None:intergenic
ACAATTCGTTGTCAATGATG+TGG 0.639822 tig0045253:+1277 Msa1465440:exon
ATCGAATTGTGATGCTTCTG+TGG 0.643973 tig0045253:+1342 Msa1465440:three_prime_UTR
TGAAAATAAGGAGACTACTG+TGG 0.644236 tig0045253:+682 Msa1465440:CDS
TAACTGTAGTTATGACAATG+AGG 0.650246 tig0045253:+766 Msa1465440:CDS
GCATTCGATTCCAAGACGCA+AGG 0.653152 tig0045253:-1166 None:intergenic
GAGTTGAAATCGAATTTGAG+TGG 0.654782 tig0045253:+968 Msa1465440:CDS
GTAGTGGAGACATTATAACT+AGG 0.665616 tig0045253:-1256 None:intergenic
TGAAAGTTTGGAGAATTATG+GGG 0.678615 tig0045253:+874 Msa1465440:CDS
ACTGTGGAATCAGAGAGAGA+AGG 0.685984 tig0045253:+698 Msa1465440:CDS
CTGTAGTTATGACAATGAGG+AGG 0.688122 tig0045253:+769 Msa1465440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTTATTTGTTAG+AGG + tig0045253:527-546 Msa1465440:intron 10.0%
!!! TTTTTTATTTTATTTGTTAG+AGG + tig0045253:527-546 Msa1465440:intron 10.0%
!! ATAAGAAAGAATGTTTATGT+TGG - tig0045253:157-176 None:intergenic 20.0%
!! AAAGAAAGAAAGAAAGAAAA+TGG + tig0045253:201-220 Msa1465440:exon 20.0%
!! AAGAAAGAAAGAAAGAAAAT+GGG + tig0045253:202-221 Msa1465440:exon 20.0%
!! TGAAGAAATATTATTGTATG+TGG + tig0045253:479-498 Msa1465440:intron 20.0%
!! TTATAATATCTATGATTCGA+CGG - tig0045253:749-768 None:intergenic 20.0%
!! TTCATTCATTAAAAGTTTGT+TGG + tig0045253:1373-1392 Msa1465440:three_prime_UTR 20.0%
!!! TCATTCATTAAAAGTTTGTT+GGG + tig0045253:1374-1393 Msa1465440:three_prime_UTR 20.0%
!! ATAAGAAAGAATGTTTATGT+TGG - tig0045253:157-176 None:intergenic 20.0%
!! AAAGAAAGAAAGAAAGAAAA+TGG + tig0045253:201-220 Msa1465440:exon 20.0%
!! AAGAAAGAAAGAAAGAAAAT+GGG + tig0045253:202-221 Msa1465440:exon 20.0%
!! TGAAGAAATATTATTGTATG+TGG + tig0045253:479-498 Msa1465440:intron 20.0%
!! TTATAATATCTATGATTCGA+CGG - tig0045253:749-768 None:intergenic 20.0%
!! TTCATTCATTAAAAGTTTGT+TGG + tig0045253:1373-1392 Msa1465440:three_prime_UTR 20.0%
!!! TCATTCATTAAAAGTTTGTT+GGG + tig0045253:1374-1393 Msa1465440:three_prime_UTR 20.0%
! TTTCTTTCTTTCTCTTTCAA+TGG - tig0045253:192-211 None:intergenic 25.0%
!!! GTTGTTTTGATATACTTACT+TGG - tig0045253:306-325 None:intergenic 25.0%
! ATCAAGAACTTAAGAATGAT+GGG - tig0045253:328-347 None:intergenic 25.0%
! AATCAAGAACTTAAGAATGA+TGG - tig0045253:329-348 None:intergenic 25.0%
!! CTTATCTTTTTGCAGAAATA+TGG + tig0045253:371-390 Msa1465440:intron 25.0%
! TATAATATCTATGATTCGAC+GGG - tig0045253:748-767 None:intergenic 25.0%
!! ATGATGATGAATTTGATGAT+GGG + tig0045253:834-853 Msa1465440:CDS 25.0%
! ATGAAAGTTTGGAGAATTAT+GGG + tig0045253:873-892 Msa1465440:CDS 25.0%
!!! TCCTGTAATTGTTTTGTTTT+TGG + tig0045253:1430-1449 Msa1465440:three_prime_UTR 25.0%
! ACCAAAAACAAAACAATTAC+AGG - tig0045253:1434-1453 None:intergenic 25.0%
!!! TTTTGTTTTTGGTTTGTGAA+TGG + tig0045253:1441-1460 Msa1465440:three_prime_UTR 25.0%
! TTTCTTTCTTTCTCTTTCAA+TGG - tig0045253:192-211 None:intergenic 25.0%
!!! GTTGTTTTGATATACTTACT+TGG - tig0045253:306-325 None:intergenic 25.0%
! ATCAAGAACTTAAGAATGAT+GGG - tig0045253:328-347 None:intergenic 25.0%
! AATCAAGAACTTAAGAATGA+TGG - tig0045253:329-348 None:intergenic 25.0%
!! CTTATCTTTTTGCAGAAATA+TGG + tig0045253:371-390 Msa1465440:intron 25.0%
! TATAATATCTATGATTCGAC+GGG - tig0045253:748-767 None:intergenic 25.0%
!! ATGATGATGAATTTGATGAT+GGG + tig0045253:834-853 Msa1465440:CDS 25.0%
! ATGAAAGTTTGGAGAATTAT+GGG + tig0045253:873-892 Msa1465440:CDS 25.0%
!!! TCCTGTAATTGTTTTGTTTT+TGG + tig0045253:1430-1449 Msa1465440:three_prime_UTR 25.0%
! ACCAAAAACAAAACAATTAC+AGG - tig0045253:1434-1453 None:intergenic 25.0%
!!! TTTTGTTTTTGGTTTGTGAA+TGG + tig0045253:1441-1460 Msa1465440:three_prime_UTR 25.0%
!! TTGTACCATATTCTGAAATC+AGG + tig0045253:432-451 Msa1465440:CDS 30.0%
ACAAACCTGATTTCAGAATA+TGG - tig0045253:440-459 None:intergenic 30.0%
TTTGAATGTAGAGATGTATG+AGG + tig0045253:613-632 Msa1465440:CDS 30.0%
TGATGAGGAAGATGAAAATA+AGG + tig0045253:670-689 Msa1465440:CDS 30.0%
TAACTGTAGTTATGACAATG+AGG + tig0045253:766-785 Msa1465440:CDS 30.0%
! GATGATGATGAATTTGATGA+TGG + tig0045253:833-852 Msa1465440:CDS 30.0%
!! AATTTGATGATGGGTATGAT+TGG + tig0045253:843-862 Msa1465440:CDS 30.0%
!! ATTTGATGATGGGTATGATT+GGG + tig0045253:844-863 Msa1465440:CDS 30.0%
GATGAAAGTTTGGAGAATTA+TGG + tig0045253:872-891 Msa1465440:CDS 30.0%
TGAAAGTTTGGAGAATTATG+GGG + tig0045253:874-893 Msa1465440:CDS 30.0%
!! TTGTACCATATTCTGAAATC+AGG + tig0045253:432-451 Msa1465440:CDS 30.0%
ACAAACCTGATTTCAGAATA+TGG - tig0045253:440-459 None:intergenic 30.0%
TTTGAATGTAGAGATGTATG+AGG + tig0045253:613-632 Msa1465440:CDS 30.0%
TGATGAGGAAGATGAAAATA+AGG + tig0045253:670-689 Msa1465440:CDS 30.0%
TAACTGTAGTTATGACAATG+AGG + tig0045253:766-785 Msa1465440:CDS 30.0%
! GATGATGATGAATTTGATGA+TGG + tig0045253:833-852 Msa1465440:CDS 30.0%
!! AATTTGATGATGGGTATGAT+TGG + tig0045253:843-862 Msa1465440:CDS 30.0%
!! ATTTGATGATGGGTATGATT+GGG + tig0045253:844-863 Msa1465440:CDS 30.0%
GATGAAAGTTTGGAGAATTA+TGG + tig0045253:872-891 Msa1465440:CDS 30.0%
TGAAAGTTTGGAGAATTATG+GGG + tig0045253:874-893 Msa1465440:CDS 30.0%
! TGTCTAAAACAGAAACTCGT+TGG + tig0045253:22-41 Msa1465440:five_prime_UTR 35.0%
!! GGTTGTTTTCTTCAGTGTTT+TGG + tig0045253:223-242 Msa1465440:CDS 35.0%
TAGAGGTAGAGATCAAGAAA+AGG + tig0045253:544-563 Msa1465440:intron 35.0%
CCAAAACCTGATAAGAACTA+GGG - tig0045253:643-662 None:intergenic 35.0%
TCCAAAACCTGATAAGAACT+AGG - tig0045253:644-663 None:intergenic 35.0%
TGAAAATAAGGAGACTACTG+TGG + tig0045253:682-701 Msa1465440:CDS 35.0%
! TTGGGATGATGATGAAAGTT+TGG + tig0045253:862-881 Msa1465440:CDS 35.0%
AACAGTGAACAGAAAGAAGA+TGG + tig0045253:917-936 Msa1465440:CDS 35.0%
ACAGTGAACAGAAAGAAGAT+GGG + tig0045253:918-937 Msa1465440:CDS 35.0%
GAGTTGAAATCGAATTTGAG+TGG + tig0045253:968-987 Msa1465440:CDS 35.0%
ATTGAGTAAGATTCTCTACC+GGG - tig0045253:1030-1049 None:intergenic 35.0%
CATTGAGTAAGATTCTCTAC+CGG - tig0045253:1031-1050 None:intergenic 35.0%
GTCAAGTAAACAAACGAGAA+AGG + tig0045253:1075-1094 Msa1465440:CDS 35.0%
!!! ATGCTTGTTTTTTGCTCTGA+TGG - tig0045253:1109-1128 None:intergenic 35.0%
!! TTGATGCTAGTCTTTCAAAC+TGG + tig0045253:1224-1243 Msa1465440:CDS 35.0%
! GTAGTGGAGACATTATAACT+AGG - tig0045253:1259-1278 None:intergenic 35.0%
TCATTGACAACGAATTGTAG+TGG - tig0045253:1275-1294 None:intergenic 35.0%
ACAATTCGTTGTCAATGATG+TGG + tig0045253:1277-1296 Msa1465440:exon 35.0%
! TTTCTGTTTCTTCAAGCACT+CGG - tig0045253:1303-1322 None:intergenic 35.0%
! TGTCTAAAACAGAAACTCGT+TGG + tig0045253:22-41 Msa1465440:five_prime_UTR 35.0%
!! GGTTGTTTTCTTCAGTGTTT+TGG + tig0045253:223-242 Msa1465440:CDS 35.0%
TAGAGGTAGAGATCAAGAAA+AGG + tig0045253:544-563 Msa1465440:intron 35.0%
CCAAAACCTGATAAGAACTA+GGG - tig0045253:643-662 None:intergenic 35.0%
TCCAAAACCTGATAAGAACT+AGG - tig0045253:644-663 None:intergenic 35.0%
TGAAAATAAGGAGACTACTG+TGG + tig0045253:682-701 Msa1465440:CDS 35.0%
! TTGGGATGATGATGAAAGTT+TGG + tig0045253:862-881 Msa1465440:CDS 35.0%
AACAGTGAACAGAAAGAAGA+TGG + tig0045253:917-936 Msa1465440:CDS 35.0%
ACAGTGAACAGAAAGAAGAT+GGG + tig0045253:918-937 Msa1465440:CDS 35.0%
GAGTTGAAATCGAATTTGAG+TGG + tig0045253:968-987 Msa1465440:CDS 35.0%
ATTGAGTAAGATTCTCTACC+GGG - tig0045253:1030-1049 None:intergenic 35.0%
CATTGAGTAAGATTCTCTAC+CGG - tig0045253:1031-1050 None:intergenic 35.0%
GTCAAGTAAACAAACGAGAA+AGG + tig0045253:1075-1094 Msa1465440:CDS 35.0%
!!! ATGCTTGTTTTTTGCTCTGA+TGG - tig0045253:1109-1128 None:intergenic 35.0%
!! TTGATGCTAGTCTTTCAAAC+TGG + tig0045253:1224-1243 Msa1465440:CDS 35.0%
! GTAGTGGAGACATTATAACT+AGG - tig0045253:1259-1278 None:intergenic 35.0%
TCATTGACAACGAATTGTAG+TGG - tig0045253:1275-1294 None:intergenic 35.0%
ACAATTCGTTGTCAATGATG+TGG + tig0045253:1277-1296 Msa1465440:exon 35.0%
! TTTCTGTTTCTTCAAGCACT+CGG - tig0045253:1303-1322 None:intergenic 35.0%
!!! GACAGAGTTTTAAAGCCGTT+TGG - tig0045253:50-69 None:intergenic 40.0%
!! TTACTTGGTTTTCTCCAGCT+AGG - tig0045253:291-310 None:intergenic 40.0%
! ATTGTATGTGGTTCTGTGAG+TGG + tig0045253:491-510 Msa1465440:intron 40.0%
GATCAAGAAAAGGAGAAGAG+TGG + tig0045253:554-573 Msa1465440:CDS 40.0%
!! CCCTAGTTCTTATCAGGTTT+TGG + tig0045253:640-659 Msa1465440:CDS 40.0%
!!! GGTTTTGGATGATGATGATG+AGG + tig0045253:655-674 Msa1465440:CDS 40.0%
CTGTAGTTATGACAATGAGG+AGG + tig0045253:769-788 Msa1465440:CDS 40.0%
TAGTTATGACAATGAGGAGG+AGG + tig0045253:772-791 Msa1465440:CDS 40.0%
GGAGGATGAAATAGTGTATG+AGG + tig0045253:790-809 Msa1465440:CDS 40.0%
CGGTAGAGAATCTTACTCAA+TGG + tig0045253:1029-1048 Msa1465440:CDS 40.0%
ACTGCAATTTCCTGCAACAA+AGG - tig0045253:1205-1224 None:intergenic 40.0%
!! TGCTAGTCTTTCAAACTGGT+TGG + tig0045253:1228-1247 Msa1465440:CDS 40.0%
ATCGAATTGTGATGCTTCTG+TGG + tig0045253:1342-1361 Msa1465440:three_prime_UTR 40.0%
CATGTTGCAGCTATGCAATT+TGG + tig0045253:1510-1529 Msa1465440:three_prime_UTR 40.0%
!!! GACAGAGTTTTAAAGCCGTT+TGG - tig0045253:50-69 None:intergenic 40.0%
!! TTACTTGGTTTTCTCCAGCT+AGG - tig0045253:291-310 None:intergenic 40.0%
! ATTGTATGTGGTTCTGTGAG+TGG + tig0045253:491-510 Msa1465440:intron 40.0%
GATCAAGAAAAGGAGAAGAG+TGG + tig0045253:554-573 Msa1465440:CDS 40.0%
!! CCCTAGTTCTTATCAGGTTT+TGG + tig0045253:640-659 Msa1465440:CDS 40.0%
!!! GGTTTTGGATGATGATGATG+AGG + tig0045253:655-674 Msa1465440:CDS 40.0%
CTGTAGTTATGACAATGAGG+AGG + tig0045253:769-788 Msa1465440:CDS 40.0%
TAGTTATGACAATGAGGAGG+AGG + tig0045253:772-791 Msa1465440:CDS 40.0%
GGAGGATGAAATAGTGTATG+AGG + tig0045253:790-809 Msa1465440:CDS 40.0%
CGGTAGAGAATCTTACTCAA+TGG + tig0045253:1029-1048 Msa1465440:CDS 40.0%
ACTGCAATTTCCTGCAACAA+AGG - tig0045253:1205-1224 None:intergenic 40.0%
!! TGCTAGTCTTTCAAACTGGT+TGG + tig0045253:1228-1247 Msa1465440:CDS 40.0%
ATCGAATTGTGATGCTTCTG+TGG + tig0045253:1342-1361 Msa1465440:three_prime_UTR 40.0%
AGAAACTCGTTGGAGCCAAA+CGG + tig0045253:32-51 Msa1465440:five_prime_UTR 45.0%
ACTCTCTACAAAGTCCTAGC+TGG + tig0045253:274-293 Msa1465440:CDS 45.0%
! GGCAAACCCTAGTTCTTATC+AGG + tig0045253:634-653 Msa1465440:CDS 45.0%
ACTGTGGAATCAGAGAGAGA+AGG + tig0045253:698-717 Msa1465440:CDS 45.0%
GAGCTTGATTCCAAGACTAC+AGG - tig0045253:1136-1155 None:intergenic 45.0%
CAACAAAGGCTTCGACTGAA+TGG - tig0045253:1191-1210 None:intergenic 45.0%
AGAAACTCGTTGGAGCCAAA+CGG + tig0045253:32-51 Msa1465440:five_prime_UTR 45.0%
ACTCTCTACAAAGTCCTAGC+TGG + tig0045253:274-293 Msa1465440:CDS 45.0%
! GGCAAACCCTAGTTCTTATC+AGG + tig0045253:634-653 Msa1465440:CDS 45.0%
ACTGTGGAATCAGAGAGAGA+AGG + tig0045253:698-717 Msa1465440:CDS 45.0%
GAGCTTGATTCCAAGACTAC+AGG - tig0045253:1136-1155 None:intergenic 45.0%
CAACAAAGGCTTCGACTGAA+TGG - tig0045253:1191-1210 None:intergenic 45.0%
CGAATTTGAGTGGACGAGAG+AGG + tig0045253:978-997 Msa1465440:CDS 50.0%
CATGAATTCCGTTCTGCACC+CGG + tig0045253:1009-1028 Msa1465440:CDS 50.0%
ATTCTCTACCGGGTGCAGAA+CGG - tig0045253:1020-1039 None:intergenic 50.0%
AAGCATGCTGCCTGTAGTCT+TGG + tig0045253:1123-1142 Msa1465440:CDS 50.0%
GCATTCGATTCCAAGACGCA+AGG - tig0045253:1169-1188 None:intergenic 50.0%
TCAGTCGAAGCCTTTGTTGC+AGG + tig0045253:1192-1211 Msa1465440:CDS 50.0%
CGAATTTGAGTGGACGAGAG+AGG + tig0045253:978-997 Msa1465440:CDS 50.0%
CATGAATTCCGTTCTGCACC+CGG + tig0045253:1009-1028 Msa1465440:CDS 50.0%
ATTCTCTACCGGGTGCAGAA+CGG - tig0045253:1020-1039 None:intergenic 50.0%
AAGCATGCTGCCTGTAGTCT+TGG + tig0045253:1123-1142 Msa1465440:CDS 50.0%
GCATTCGATTCCAAGACGCA+AGG - tig0045253:1169-1188 None:intergenic 50.0%
TCAGTCGAAGCCTTTGTTGC+AGG + tig0045253:1192-1211 Msa1465440:CDS 50.0%
GAAGTTCTCGCCTTGCGTCT+TGG + tig0045253:1156-1175 Msa1465440:CDS 55.0%
GAAGTTCTCGCCTTGCGTCT+TGG + tig0045253:1156-1175 Msa1465440:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0045253 gene 12 1531 12 ID=Msa1465440;Name=Msa1465440
tig0045253 mRNA 12 1531 12 ID=Msa1465440-mRNA-1;Parent=Msa1465440;Name=Msa1465440-mRNA-1;_AED=0.03;_eAED=0.03;_QI=208|1|1|1|1|1|3|237|300
tig0045253 exon 12 306 12 ID=Msa1465440-mRNA-1:exon:24796;Parent=Msa1465440-mRNA-1
tig0045253 exon 386 453 386 ID=Msa1465440-mRNA-1:exon:24797;Parent=Msa1465440-mRNA-1
tig0045253 exon 547 1531 547 ID=Msa1465440-mRNA-1:exon:24798;Parent=Msa1465440-mRNA-1
tig0045253 five_prime_UTR 12 219 12 ID=Msa1465440-mRNA-1:five_prime_utr;Parent=Msa1465440-mRNA-1
tig0045253 CDS 220 306 220 ID=Msa1465440-mRNA-1:cds;Parent=Msa1465440-mRNA-1
tig0045253 CDS 386 453 386 ID=Msa1465440-mRNA-1:cds;Parent=Msa1465440-mRNA-1
tig0045253 CDS 547 1294 547 ID=Msa1465440-mRNA-1:cds;Parent=Msa1465440-mRNA-1
tig0045253 three_prime_UTR 1295 1531 1295 ID=Msa1465440-mRNA-1:three_prime_utr;Parent=Msa1465440-mRNA-1
Gene Sequence

>Msa1465440

ATGGGTTGTTTTCTTCAGTGTTTTGGTTTAACAAGCAAAAGAAAACGCAGAAAGACTCTCTACAAAGTCCTAGCTGGAGAAAACCAAAAATATGGAAACTATCAAGTTCTTGCTACTATTACAGAGAAATCTATTGTACCATATTCTGAAATCAGAGGTAGAGATCAAGAAAAGGAGAAGAGTGGTGTTAAGAGCAAGAAGAAGAAGAAAGTTAGCTTTAATTTGAATGTAGAGATGTATGAGGCAAACCCTAGTTCTTATCAGGTTTTGGATGATGATGATGAGGAAGATGAAAATAAGGAGACTACTGTGGAATCAGAGAGAGAAGGATCTGTAGTGTCGATGATTCGATACCCGTCGAATCATAGATATTATAACTGTAGTTATGACAATGAGGAGGAGGATGAAATAGTGTATGAGGAATCTGATATTGATGAGTTTGATGATGATGAATTTGATGATGGGTATGATTGGGATGATGATGAAAGTTTGGAGAATTATGGGGATGCTGAAGTTTGCGATGAAAACAGTGAACAGAAAGAAGATGGGATGAAGAATCAGAAGTCGAACGATGCTGAGTTGAAATCGAATTTGAGTGGACGAGAGAGGAGCATAAACATGAATTCCGTTCTGCACCCGGTAGAGAATCTTACTCAATGGAAAGCGATCAAAGCAAAAGTTGCGTCAAGTAAACAAACGAGAAAGGAAAATGTTCCATCAGAGCAAAAAACAAGCATGCTGCCTGTAGTCTTGGAATCAAGCTCGAAGTTCTCGCCTTGCGTCTTGGAATCGAATGCCATTCAGTCGAAGCCTTTGTTGCAGGAAATTGCAGTTGATGCTAGTCTTTCAAACTGGTTGGTTTCTCCTAGTTATAATGTCTCCACTACAATTCGTTGTCAATGA

Protein sequence

>Msa1465440

MGCFLQCFGLTSKRKRRKTLYKVLAGENQKYGNYQVLATITEKSIVPYSEIRGRDQEKEKSGVKSKKKKKVSFNLNVEMYEANPSSYQVLDDDDEEDENKETTVESEREGSVVSMIRYPSNHRYYNCSYDNEEEDEIVYEESDIDEFDDDEFDDGYDWDDDESLENYGDAEVCDENSEQKEDGMKNQKSNDAELKSNLSGRERSINMNSVLHPVENLTQWKAIKAKVASSKQTRKENVPSEQKTSMLPVVLESSSKFSPCVLESNAIQSKPLLQEIAVDASLSNWLVSPSYNVSTTIRCQ*