Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756590 | sp|Q9FGQ6|EB1C_ARATH | 61.383 | 347 | 98 | 10 | 1 | 331 | 1 | 327 | 3.48e-139 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756590 | G7K588 | 94.294 | 333 | 18 | 1 | 1 | 332 | 1 | 333 | 0.0 | 611 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0756590 | 0.831728 | 1.416058e-55 | -8.615850e-47 |
| Msa0028420 | Msa0756590 | 0.808276 | 3.354179e-50 | -8.615850e-47 |
| Msa0035140 | Msa0756590 | 0.809202 | 2.126401e-50 | -8.615850e-47 |
| Msa0048510 | Msa0756590 | 0.813282 | 2.770020e-51 | -8.615850e-47 |
| Msa0056180 | Msa0756590 | 0.811401 | 7.129904e-51 | -8.615850e-47 |
| Msa0067330 | Msa0756590 | 0.815894 | 7.315249e-52 | -8.615850e-47 |
| Msa0077560 | Msa0756590 | 0.822195 | 2.696984e-53 | -8.615850e-47 |
| Msa0081980 | Msa0756590 | 0.815086 | 1.106813e-51 | -8.615850e-47 |
| Msa0082020 | Msa0756590 | 0.811419 | 7.068831e-51 | -8.615850e-47 |
| Msa0092790 | Msa0756590 | 0.808079 | 3.694605e-50 | -8.615850e-47 |
| Msa0094780 | Msa0756590 | 0.828219 | 1.015150e-54 | -8.615850e-47 |
| Msa0606100 | Msa0756590 | 0.800873 | 1.174993e-48 | -8.615850e-47 |
| Msa0608330 | Msa0756590 | 0.802796 | 4.733319e-49 | -8.615850e-47 |
| Msa0624900 | Msa0756590 | 0.810989 | 8.762014e-51 | -8.615850e-47 |
| Msa0652070 | Msa0756590 | 0.802478 | 5.503887e-49 | -8.615850e-47 |
| Msa0657700 | Msa0756590 | 0.808502 | 3.000905e-50 | -8.615850e-47 |
| Msa0658640 | Msa0756590 | 0.847711 | 9.725588e-60 | -8.615850e-47 |
| Msa0666700 | Msa0756590 | 0.822936 | 1.813701e-53 | -8.615850e-47 |
| Msa0670100 | Msa0756590 | 0.814933 | 1.196821e-51 | -8.615850e-47 |
| Msa0694630 | Msa0756590 | 0.800015 | 1.757211e-48 | -8.615850e-47 |
| Msa0702810 | Msa0756590 | 0.821520 | 3.865888e-53 | -8.615850e-47 |
| Msa0703600 | Msa0756590 | 0.847141 | 1.395292e-59 | -8.615850e-47 |
| Msa0709200 | Msa0756590 | 0.850640 | 1.489555e-60 | -8.615850e-47 |
| Msa0709440 | Msa0756590 | 0.834403 | 3.058990e-56 | -8.615850e-47 |
| Msa0714790 | Msa0756590 | 0.818335 | 2.068730e-52 | -8.615850e-47 |
| Msa0735780 | Msa0756590 | 0.830366 | 3.058075e-55 | -8.615850e-47 |
| Msa0749890 | Msa0756590 | 0.822360 | 2.469588e-53 | -8.615850e-47 |
| Msa0755760 | Msa0756590 | 0.917746 | 3.644277e-86 | -8.615850e-47 |
| Msa0756590 | Msa0756820 | 0.802939 | 4.421180e-49 | -8.615850e-47 |
| Msa0756590 | Msa0773630 | 0.829561 | 4.806433e-55 | -8.615850e-47 |
| Msa0756590 | Msa0777750 | 0.831095 | 2.026853e-55 | -8.615850e-47 |
| Msa0756590 | Msa0795870 | 0.834134 | 3.572650e-56 | -8.615850e-47 |
| Msa0756590 | Msa0815920 | 0.819250 | 1.281517e-52 | -8.615850e-47 |
| Msa0756590 | Msa0824450 | 0.809570 | 1.772650e-50 | -8.615850e-47 |
| Msa0756590 | Msa0828970 | 0.826564 | 2.531784e-54 | -8.615850e-47 |
| Msa0756590 | Msa0830130 | 0.829355 | 5.392984e-55 | -8.615850e-47 |
| Msa0756590 | Msa0830460 | 0.829728 | 4.376365e-55 | -8.615850e-47 |
| Msa0756590 | Msa0833650 | 0.843321 | 1.505405e-58 | -8.615850e-47 |
| Msa0756590 | Msa0835900 | 0.945216 | 4.624016e-104 | -8.615850e-47 |
| Msa0756590 | Msa0836150 | 0.814846 | 1.251451e-51 | -8.615850e-47 |
| Msa0756590 | Msa0842070 | 0.817528 | 3.147589e-52 | -8.615850e-47 |
| Msa0756590 | Msa0863620 | 0.827008 | 1.983566e-54 | -8.615850e-47 |
| Msa0756590 | Msa0878280 | 0.822628 | 2.140229e-53 | -8.615850e-47 |
| Msa0756590 | Msa0966320 | 0.800579 | 1.348982e-48 | -8.615850e-47 |
| Msa0756590 | Msa0975750 | 0.816877 | 4.408510e-52 | -8.615850e-47 |
| Msa0756590 | Msa0975810 | 0.813182 | 2.912788e-51 | -8.615850e-47 |
| Msa0756590 | Msa0997920 | 0.833289 | 5.809498e-56 | -8.615850e-47 |
| Msa0756590 | Msa1001740 | 0.839944 | 1.170244e-57 | -8.615850e-47 |
| Msa0756590 | Msa1037540 | 0.816168 | 6.355286e-52 | -8.615850e-47 |
| Msa0756590 | Msa1084530 | 0.838035 | 3.652612e-57 | -8.615850e-47 |
| Msa0756590 | Msa1103990 | 0.804070 | 2.576693e-49 | -8.615850e-47 |
| Msa0756590 | Msa1125820 | 0.834888 | 2.309467e-56 | -8.615850e-47 |
| Msa0756590 | Msa1125990 | 0.836466 | 9.204298e-57 | -8.615850e-47 |
| Msa0756590 | Msa1130420 | 0.801485 | 8.805050e-49 | -8.615850e-47 |
| Msa0756590 | Msa1132530 | 0.807460 | 4.999484e-50 | -8.615850e-47 |
| Msa0756590 | Msa1132840 | 0.845453 | 4.022685e-59 | -8.615850e-47 |
| Msa0756590 | Msa1154100 | 0.803553 | 3.300334e-49 | -8.615850e-47 |
| Msa0756590 | Msa1171290 | 0.832997 | 6.867984e-56 | -8.615850e-47 |
| Msa0756590 | Msa1186020 | 0.818652 | 1.752955e-52 | -8.615850e-47 |
| Msa0756590 | Msa1192570 | 0.830981 | 2.161457e-55 | -8.615850e-47 |
| Msa0756590 | Msa1208950 | 0.808142 | 3.582215e-50 | -8.615850e-47 |
| Msa0756590 | Msa1226520 | 0.849283 | 3.571878e-60 | -8.615850e-47 |
| Msa0756590 | Msa1244240 | 0.817503 | 3.187591e-52 | -8.615850e-47 |
| Msa0756590 | Msa1263780 | 0.812383 | 4.359021e-51 | -8.615850e-47 |
| Msa0756590 | Msa1320670 | 0.815095 | 1.101576e-51 | -8.615850e-47 |
| Msa0756590 | Msa1359690 | 0.802747 | 4.844848e-49 | -8.615850e-47 |
| Msa0756590 | Msa1366150 | 0.810803 | 9.613644e-51 | -8.615850e-47 |
| Msa0756590 | Msa1392580 | 0.819494 | 1.127943e-52 | -8.615850e-47 |
| Msa0756590 | Msa1397400 | 0.835660 | 1.474106e-56 | -8.615850e-47 |
| Msa0756590 | Msa1420950 | 0.821637 | 3.632801e-53 | -8.615850e-47 |
| Msa0756590 | Msa1440880 | 0.800136 | 1.660438e-48 | -8.615850e-47 |
| Msa0756590 | Msa1447170 | 0.807599 | 4.671190e-50 | -8.615850e-47 |
| Msa0128460 | Msa0756590 | 0.807103 | 5.952268e-50 | -8.615850e-47 |
| Msa0140280 | Msa0756590 | 0.802906 | 4.490751e-49 | -8.615850e-47 |
| Msa0158860 | Msa0756590 | 0.801424 | 9.061602e-49 | -8.615850e-47 |
| Msa0173730 | Msa0756590 | 0.813560 | 2.406163e-51 | -8.615850e-47 |
| Msa0174290 | Msa0756590 | 0.810188 | 1.305343e-50 | -8.615850e-47 |
| Msa0190110 | Msa0756590 | 0.800426 | 1.449441e-48 | -8.615850e-47 |
| Msa0213030 | Msa0756590 | 0.818425 | 1.973280e-52 | -8.615850e-47 |
| Msa0225860 | Msa0756590 | 0.835532 | 1.588646e-56 | -8.615850e-47 |
| Msa0367520 | Msa0756590 | 0.805742 | 1.152313e-49 | -8.615850e-47 |
| Msa0481890 | Msa0756590 | 0.831949 | 1.248682e-55 | -8.615850e-47 |
| Msa0242590 | Msa0756590 | 0.812490 | 4.130135e-51 | -8.615850e-47 |
| Msa0260510 | Msa0756590 | 0.825768 | 3.914252e-54 | -8.615850e-47 |
| Msa0269210 | Msa0756590 | 0.817315 | 3.514406e-52 | -8.615850e-47 |
| Msa0298470 | Msa0756590 | 0.845873 | 3.095506e-59 | -8.615850e-47 |
| Msa0337480 | Msa0756590 | 0.815284 | 1.000512e-51 | -8.615850e-47 |
| Msa0340500 | Msa0756590 | 0.815602 | 8.497578e-52 | -8.615850e-47 |
| Msa0343010 | Msa0756590 | 0.811056 | 8.473043e-51 | -8.615850e-47 |
| Msa0483100 | Msa0756590 | 0.819383 | 1.195522e-52 | -8.615850e-47 |
| Msa0506950 | Msa0756590 | 0.804755 | 1.855115e-49 | -8.615850e-47 |
| Msa0530780 | Msa0756590 | 0.808286 | 3.337749e-50 | -8.615850e-47 |
| Msa0534720 | Msa0756590 | 0.819023 | 1.443714e-52 | -8.615850e-47 |
| Msa0567170 | Msa0756590 | 0.843355 | 1.474291e-58 | -8.615850e-47 |
| Msa0580370 | Msa0756590 | 0.847315 | 1.250225e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756590 | MtrunA17_Chr5g0401741 | 94.294 | 333 | 18 | 1 | 1 | 332 | 1 | 333 | 0.0 | 611 |
| Msa0756590 | MtrunA17_Chr3g0092651 | 58.304 | 283 | 94 | 6 | 1 | 275 | 1 | 267 | 8.50e-112 | 325 |
| Msa0756590 | MtrunA17_Chr4g0060561 | 58.333 | 276 | 88 | 5 | 1 | 267 | 1 | 258 | 2.14e-107 | 315 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756590 | AT5G67270.1 | 61.383 | 347 | 98 | 10 | 1 | 331 | 1 | 327 | 3.54e-140 | 400 |
| Msa0756590 | AT3G47690.1 | 57.509 | 273 | 96 | 4 | 1 | 271 | 1 | 255 | 5.08e-110 | 322 |
| Msa0756590 | AT5G62500.1 | 57.401 | 277 | 97 | 5 | 1 | 271 | 1 | 262 | 7.17e-108 | 317 |
Find 85 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGAGGAAGAAAACTATTT+TGG | 0.194254 | 5_2:+10929251 | Msa0756590:three_prime_UTR |
| TATAATCATAGCTATATTTC+TGG | 0.208265 | 5_2:-10929408 | None:intergenic |
| TATAATCCAGTGTTATTTCT+TGG | 0.229851 | 5_2:+10929443 | Msa0756590:three_prime_UTR |
| TACTGTGATTCTGTTAATTC+TGG | 0.239455 | 5_2:+10927701 | Msa0756590:CDS |
| AGAGACTTATGTTATGAATA+TGG | 0.275535 | 5_2:+10929337 | Msa0756590:intron |
| ATGTTATGAATATGGTTATA+TGG | 0.282988 | 5_2:+10929345 | Msa0756590:three_prime_UTR |
| AGGAAGACCGTTGGATAATC+TGG | 0.313939 | 5_2:+10927655 | Msa0756590:CDS |
| TGAGATGATTCAGAATTATA+AGG | 0.333556 | 5_2:+10927461 | Msa0756590:CDS |
| AATTGGAACCTCTTCGACTT+TGG | 0.334561 | 5_2:-10927226 | None:intergenic |
| TCCTCAGAAACCTCAGCAAT+GGG | 0.351899 | 5_2:-10929078 | None:intergenic |
| GCAACAGTGGCGACGGCAGC+AGG | 0.357205 | 5_2:-10928626 | None:intergenic |
| GGCGACGAACATTGGAATAA+TGG | 0.366648 | 5_2:+10927134 | Msa0756590:CDS |
| ACCGGTGAATGTTCTACTTC+AGG | 0.375265 | 5_2:-10928854 | None:intergenic |
| TTTCGAATGTTCACCATAAC+GGG | 0.386900 | 5_2:+10929202 | Msa0756590:CDS |
| AGAGAGATGTGCAGGGGAGG+AGG | 0.387265 | 5_2:+10928452 | Msa0756590:CDS |
| TCGTCTAGGAGACAAATTAT+TGG | 0.405029 | 5_2:-10929166 | None:intergenic |
| TCATGAGAGGTGACCCGTTA+TGG | 0.407788 | 5_2:-10929215 | None:intergenic |
| CTTCTTGATGCCGCTCATCC+TGG | 0.411853 | 5_2:+10927393 | Msa0756590:CDS |
| ATTACCAACAGCTATACTTC+TGG | 0.412239 | 5_2:-10929379 | None:intergenic |
| TTATGCATCGGAACAATTCC+AGG | 0.415843 | 5_2:-10927411 | None:intergenic |
| TCGTTTCAGTTATAATCCTT+TGG | 0.416745 | 5_2:+10928424 | Msa0756590:intron |
| AACCCTGAGGTTGATGCTGC+TGG | 0.418093 | 5_2:+10929141 | Msa0756590:CDS |
| AGCTCCTGCATATGATCAAC+AGG | 0.424134 | 5_2:+10928652 | Msa0756590:CDS |
| AGGAGAGAGATGTGCAGGGG+AGG | 0.437578 | 5_2:+10928449 | Msa0756590:CDS |
| TGGAGAGGAGAGAGATGTGC+AGG | 0.442889 | 5_2:+10928444 | Msa0756590:CDS |
| TTCCTTCTCAAGACTATCAA+TGG | 0.443572 | 5_2:-10928780 | None:intergenic |
| TACTGCAAACCATGCAAATC+CGG | 0.449249 | 5_2:+10928583 | Msa0756590:CDS |
| TATGCTTACTGCTGATCTAC+AGG | 0.453875 | 5_2:+10929038 | Msa0756590:CDS |
| ACCTCAGCAATGGGGCTCAA+TGG | 0.463460 | 5_2:-10929069 | None:intergenic |
| GTTTCGAATGTTCACCATAA+CGG | 0.473409 | 5_2:+10929201 | Msa0756590:CDS |
| GTAGATCTGAAATCCTCTCT+TGG | 0.479564 | 5_2:+10927175 | Msa0756590:CDS |
| GTGCCAGCAGCATCAACCTC+AGG | 0.484253 | 5_2:-10929144 | None:intergenic |
| GTAGAACCACCCTTGTTTGA+GGG | 0.498601 | 5_2:-10928509 | None:intergenic |
| AGTAGAACCACCCTTGTTTG+AGG | 0.504441 | 5_2:-10928510 | None:intergenic |
| CAACAAACTCAAAATCACTA+AGG | 0.505654 | 5_2:+10927500 | Msa0756590:CDS |
| CTCCTCAGAAACCTCAGCAA+TGG | 0.518364 | 5_2:-10929079 | None:intergenic |
| AGCTGCAGCAACAGTGGCGA+CGG | 0.519544 | 5_2:-10928633 | None:intergenic |
| TGATGACAATGGATCTGAGT+TGG | 0.524539 | 5_2:+10929002 | Msa0756590:CDS |
| ATCAAGAAGCTGACAATGAA+CGG | 0.527675 | 5_2:-10927379 | None:intergenic |
| CTGTTAATTCTGGACAGCAC+AGG | 0.531391 | 5_2:+10927711 | Msa0756590:CDS |
| TGGAATTGTTCCGATGCATA+AGG | 0.531970 | 5_2:+10927413 | Msa0756590:CDS |
| GCATATTGAGGTTAGCAAGC+TGG | 0.533221 | 5_2:+10927628 | Msa0756590:intron |
| CCCCATTGCTGAGGTTTCTG+AGG | 0.538400 | 5_2:+10929077 | Msa0756590:CDS |
| AGCAGCATCAACCTCAGGGT+TGG | 0.539714 | 5_2:-10929139 | None:intergenic |
| CACTCTCAACCCTCAAACAA+GGG | 0.547676 | 5_2:+10928500 | Msa0756590:CDS |
| CGAGCAGTGTGGGAAGATTG+AGG | 0.547920 | 5_2:-10928545 | None:intergenic |
| ATCATTCCTTCGAGCAGTGT+GGG | 0.553545 | 5_2:-10928555 | None:intergenic |
| TTGCAACCACCGGATTTGCA+TGG | 0.557039 | 5_2:-10928592 | None:intergenic |
| ACACTCTCAACCCTCAAACA+AGG | 0.557498 | 5_2:+10928499 | Msa0756590:CDS |
| GGAGAGGAGAGAGATGTGCA+GGG | 0.562837 | 5_2:+10928445 | Msa0756590:CDS |
| GCCATTGAGCCCCATTGCTG+AGG | 0.565737 | 5_2:+10929068 | Msa0756590:CDS |
| CAATCTCTCCAAAGTCGAAG+AGG | 0.568906 | 5_2:+10927218 | Msa0756590:CDS |
| CGGTGGTTGCAAAAGCCGCT+AGG | 0.570861 | 5_2:+10928603 | Msa0756590:CDS |
| TAGAAATTCACCTTATGCAT+CGG | 0.573560 | 5_2:-10927423 | None:intergenic |
| CACATCTCTCTCCTCTCCAA+AGG | 0.574177 | 5_2:-10928440 | None:intergenic |
| GAGAGGAGAGAGATGTGCAG+GGG | 0.575095 | 5_2:+10928446 | Msa0756590:CDS |
| GAGGTTAGCAAGCTGGTGAA+AGG | 0.576068 | 5_2:+10927635 | Msa0756590:CDS |
| AGTACCTGTTGATCATATGC+AGG | 0.577474 | 5_2:-10928656 | None:intergenic |
| GGTCACCTCTCATGATCTGA+AGG | 0.580315 | 5_2:+10929223 | Msa0756590:CDS |
| ATCCATTGATAGTCTTGAGA+AGG | 0.585036 | 5_2:+10928778 | Msa0756590:CDS |
| ATCATAGCTATATTTCTGGA+TGG | 0.588246 | 5_2:-10929404 | None:intergenic |
| ACATCAGAAAGCCTTCGTCT+AGG | 0.591311 | 5_2:-10929180 | None:intergenic |
| TCCTGAAGTAGAACATTCAC+CGG | 0.595180 | 5_2:+10928853 | Msa0756590:CDS |
| TCAGTTATAATCCTTTGGAG+AGG | 0.609241 | 5_2:+10928429 | Msa0756590:intron |
| GCTGGTGAAAGGAAGACCGT+TGG | 0.609936 | 5_2:+10927646 | Msa0756590:CDS |
| AATCTTCCCACACTGCTCGA+AGG | 0.610802 | 5_2:+10928549 | Msa0756590:CDS |
| CACAAGCCAAGAAATAACAC+TGG | 0.613143 | 5_2:-10929449 | None:intergenic |
| TGCCAGCAGCATCAACCTCA+GGG | 0.613718 | 5_2:-10929143 | None:intergenic |
| TGCAGGAGCTGCAGCAACAG+TGG | 0.616795 | 5_2:-10928639 | None:intergenic |
| TAATCCAGAAGTATAGCTGT+TGG | 0.622454 | 5_2:+10929375 | Msa0756590:three_prime_UTR |
| ATGGACACTGCATACTTCGT+CGG | 0.622514 | 5_2:+10927153 | Msa0756590:CDS |
| CATCATTCCTTCGAGCAGTG+TGG | 0.625952 | 5_2:-10928556 | None:intergenic |
| CGGAACAATTCCAGGATGAG+CGG | 0.629441 | 5_2:-10927403 | None:intergenic |
| GGCGACGGCAGCAGGCCTAG+CGG | 0.641456 | 5_2:-10928618 | None:intergenic |
| ATAATTTGTCTCCTAGACGA+AGG | 0.644751 | 5_2:+10929169 | Msa0756590:CDS |
| TGCAAACCATGCAAATCCGG+TGG | 0.660574 | 5_2:+10928586 | Msa0756590:CDS |
| GAGTTGAATTGATCCAAGAG+AGG | 0.661001 | 5_2:-10927188 | None:intergenic |
| TTGTATGCTACTGATGACAA+TGG | 0.664708 | 5_2:+10928991 | Msa0756590:CDS |
| ATAATCTGGAGTTCATGCAA+TGG | 0.681963 | 5_2:+10927669 | Msa0756590:CDS |
| TCTCAACCCTCAAACAAGGG+TGG | 0.685605 | 5_2:+10928503 | Msa0756590:CDS |
| CCTCAGAAACCTCAGCAATG+GGG | 0.699654 | 5_2:-10929077 | None:intergenic |
| AAAGAACTTTGCCAACCCTG+AGG | 0.702193 | 5_2:+10929128 | Msa0756590:CDS |
| ATGAACTCCAGATTATCCAA+CGG | 0.710109 | 5_2:-10927662 | None:intergenic |
| AGGGTGGTTCTACTTCACAC+AGG | 0.720858 | 5_2:+10928519 | Msa0756590:CDS |
| GCAGTGTGGGAAGATTGAGG+AGG | 0.731744 | 5_2:-10928542 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATTAAGAAAATC+AGG | - | chr5_2:10927593-10927612 | None:intergenic | 10.0% |
| !!! | TTATTTTTCATTATTTTTGT+TGG | + | chr5_2:10929491-10929510 | Msa0756590:three_prime_UTR | 10.0% |
| !! | AAAATTGAAGAAAATTGAAT+CGG | - | chr5_2:10927255-10927274 | None:intergenic | 15.0% |
| !!! | TATCTTTGAAATTGATAATT+AGG | + | chr5_2:10927823-10927842 | Msa0756590:intron | 15.0% |
| !! | TATTAATTATATTGGATTTG+AGG | + | chr5_2:10928237-10928256 | Msa0756590:intron | 15.0% |
| !!! | GTTTGATTAGTTTAAAATTA+AGG | + | chr5_2:10928362-10928381 | Msa0756590:intron | 15.0% |
| !!! | ATTAAGGTATATTTTGTAAT+TGG | + | chr5_2:10928378-10928397 | Msa0756590:intron | 15.0% |
| !!! | GATGTTTTTTATATTGATTA+GGG | + | chr5_2:10929307-10929326 | Msa0756590:intron | 15.0% |
| !!! | ATGTTTTTTATATTGATTAG+GGG | + | chr5_2:10929308-10929327 | Msa0756590:intron | 15.0% |
| !!! | TTTTTCGTTGATTTTGTTTT+AGG | + | chr5_2:10927280-10927299 | Msa0756590:intron | 20.0% |
| !!! | TGAATTGTGAAATTTTGTTT+AGG | + | chr5_2:10927344-10927363 | Msa0756590:intron | 20.0% |
| !! | AAATTAAGAAAATCAGGAAT+CGG | - | chr5_2:10927587-10927606 | None:intergenic | 20.0% |
| !!! | AAATTGATAATTAGGTCTTA+TGG | + | chr5_2:10927831-10927850 | Msa0756590:intron | 20.0% |
| !! | GTAAATGGTAATAATTAGAT+TGG | + | chr5_2:10927946-10927965 | Msa0756590:intron | 20.0% |
| !! | GATATCGGTATTAATTATAT+TGG | + | chr5_2:10928229-10928248 | Msa0756590:intron | 20.0% |
| !!! | GATATTGGTTATACTTATAT+TGG | + | chr5_2:10928325-10928344 | Msa0756590:intron | 20.0% |
| !! | TTATACTTATATTGGATTTG+AGG | + | chr5_2:10928333-10928352 | Msa0756590:intron | 20.0% |
| !!! | CGATGTTTTTTATATTGATT+AGG | + | chr5_2:10929306-10929325 | Msa0756590:intron | 20.0% |
| !! | ATGTTATGAATATGGTTATA+TGG | + | chr5_2:10929345-10929364 | Msa0756590:three_prime_UTR | 20.0% |
| !! | TATAATCATAGCTATATTTC+TGG | - | chr5_2:10929411-10929430 | None:intergenic | 20.0% |
| !! | TTTTCTTCTTTCTTCTCTAA+CGG | - | chr5_2:10927068-10927087 | None:intergenic | 25.0% |
| ! | TGAGATGATTCAGAATTATA+AGG | + | chr5_2:10927461-10927480 | Msa0756590:CDS | 25.0% |
| !! | CTAAGGTAAATTTCGATTTT+CGG | + | chr5_2:10927517-10927536 | Msa0756590:intron | 25.0% |
| !! | TCAGCAAAAAATTTAGAGTA+AGG | - | chr5_2:10927746-10927765 | None:intergenic | 25.0% |
| !! | AATTTCATGCAAATGTTTTG+AGG | + | chr5_2:10927907-10927926 | Msa0756590:intron | 25.0% |
| ! | TAATGATCATATTGGATTTG+AGG | + | chr5_2:10928138-10928157 | Msa0756590:intron | 25.0% |
| !!! | TCAAAGTCTTGTTTTGATAT+CGG | + | chr5_2:10928214-10928233 | Msa0756590:intron | 25.0% |
| !!! | TCAGAGTATTGTTTTGATAT+TGG | + | chr5_2:10928310-10928329 | Msa0756590:intron | 25.0% |
| !! | GGTATATTTTGTAATTGGAT+TGG | + | chr5_2:10928383-10928402 | Msa0756590:intron | 25.0% |
| !! | ATTTTTACTTTGCAAAACTG+AGG | + | chr5_2:10928807-10928826 | Msa0756590:CDS | 25.0% |
| !! | TTTTTACTTTGCAAAACTGA+GGG | + | chr5_2:10928808-10928827 | Msa0756590:CDS | 25.0% |
| !! | TTGAAATTGGTAATTGTTGA+TGG | + | chr5_2:10928908-10928927 | Msa0756590:intron | 25.0% |
| !! | TGAAATTGGTAATTGTTGAT+GGG | + | chr5_2:10928909-10928928 | Msa0756590:intron | 25.0% |
| !!! | GTGAATTTTGTTTATGATTC+AGG | + | chr5_2:10928945-10928964 | Msa0756590:intron | 25.0% |
| !! | TTAGAGGAAGAAAACTATTT+TGG | + | chr5_2:10929251-10929270 | Msa0756590:three_prime_UTR | 25.0% |
| ! | AGAGACTTATGTTATGAATA+TGG | + | chr5_2:10929337-10929356 | Msa0756590:intron | 25.0% |
| !!! | TATAATCCAGTGTTATTTCT+TGG | + | chr5_2:10929443-10929462 | Msa0756590:three_prime_UTR | 25.0% |
| GAAAATTGAATCGGAGAAAT+TGG | - | chr5_2:10927246-10927265 | None:intergenic | 30.0% | |
| !! | AATTTTGTTTAGGCTTGTTC+TGG | + | chr5_2:10927354-10927373 | Msa0756590:intron | 30.0% |
| TAGAAATTCACCTTATGCAT+CGG | - | chr5_2:10927426-10927445 | None:intergenic | 30.0% | |
| CAACAAACTCAAAATCACTA+AGG | + | chr5_2:10927500-10927519 | Msa0756590:CDS | 30.0% | |
| TACTGTGATTCTGTTAATTC+TGG | + | chr5_2:10927701-10927720 | Msa0756590:CDS | 30.0% | |
| ! | TGATAATTAGGTCTTATGGT+TGG | + | chr5_2:10927835-10927854 | Msa0756590:intron | 30.0% |
| !!! | CGTGTTTTGTTATTGGTAAA+TGG | + | chr5_2:10927931-10927950 | Msa0756590:intron | 30.0% |
| AAGTTACTGAATGTTGAACA+AGG | + | chr5_2:10928003-10928022 | Msa0756590:intron | 30.0% | |
| !! | GGTATTGGTAATGATCATAT+TGG | + | chr5_2:10928130-10928149 | Msa0756590:intron | 30.0% |
| !!! | TATTTTGTAATTGGATTGGC+TGG | + | chr5_2:10928387-10928406 | Msa0756590:intron | 30.0% |
| TCGTTTCAGTTATAATCCTT+TGG | + | chr5_2:10928424-10928443 | Msa0756590:intron | 30.0% | |
| ACTTAAGGTGATACAGATAA+CGG | + | chr5_2:10928745-10928764 | Msa0756590:intron | 30.0% | |
| AGAGTTTACAAGCAAAATAC+CGG | - | chr5_2:10928875-10928894 | None:intergenic | 30.0% | |
| !! | TCACTTACGAGTATTGAAAT+TGG | + | chr5_2:10928895-10928914 | Msa0756590:intron | 30.0% |
| TGATCTGAAGGAAAAATTAG+AGG | + | chr5_2:10929235-10929254 | Msa0756590:exon | 30.0% | |
| !! | ATCATAGCTATATTTCTGGA+TGG | - | chr5_2:10929407-10929426 | None:intergenic | 30.0% |
| AAAAGCGAAGCAGAGAAAAA+TGG | + | chr5_2:10927113-10927132 | Msa0756590:exon | 35.0% | |
| ATCAAGAAGCTGACAATGAA+CGG | - | chr5_2:10927382-10927401 | None:intergenic | 35.0% | |
| ! | TTGATTTTCGCAGCATATTG+AGG | + | chr5_2:10927616-10927635 | Msa0756590:intron | 35.0% |
| ATGAACTCCAGATTATCCAA+CGG | - | chr5_2:10927665-10927684 | None:intergenic | 35.0% | |
| ! | ATAATCTGGAGTTCATGCAA+TGG | + | chr5_2:10927669-10927688 | Msa0756590:CDS | 35.0% |
| TGATGCTAATCTTAATTGCG+TGG | + | chr5_2:10927794-10927813 | Msa0756590:intron | 35.0% | |
| !! | TTGAGGTCGTGTTTTGTTAT+TGG | + | chr5_2:10927924-10927943 | Msa0756590:intron | 35.0% |
| ! | TGAACAAGGTCTTGATAACT+AGG | + | chr5_2:10928017-10928036 | Msa0756590:intron | 35.0% |
| GCTTGATAAGTTCTTAACTG+AGG | + | chr5_2:10928167-10928186 | Msa0756590:intron | 35.0% | |
| !! | TCAAAACTGAGTTTGCTGAT+TGG | + | chr5_2:10928277-10928296 | Msa0756590:intron | 35.0% |
| ! | TCAGTTATAATCCTTTGGAG+AGG | + | chr5_2:10928429-10928448 | Msa0756590:intron | 35.0% |
| GTGCATAGATCTAACACTTA+AGG | + | chr5_2:10928730-10928749 | Msa0756590:intron | 35.0% | |
| ! | ATCCATTGATAGTCTTGAGA+AGG | + | chr5_2:10928778-10928797 | Msa0756590:CDS | 35.0% |
| TTCCTTCTCAAGACTATCAA+TGG | - | chr5_2:10928783-10928802 | None:intergenic | 35.0% | |
| TTGTATGCTACTGATGACAA+TGG | + | chr5_2:10928991-10929010 | Msa0756590:CDS | 35.0% | |
| TCGTCTAGGAGACAAATTAT+TGG | - | chr5_2:10929169-10929188 | None:intergenic | 35.0% | |
| ! | ATAATTTGTCTCCTAGACGA+AGG | + | chr5_2:10929169-10929188 | Msa0756590:CDS | 35.0% |
| GTTTCGAATGTTCACCATAA+CGG | + | chr5_2:10929201-10929220 | Msa0756590:CDS | 35.0% | |
| TTTCGAATGTTCACCATAAC+GGG | + | chr5_2:10929202-10929221 | Msa0756590:CDS | 35.0% | |
| ! | TTTTTCCTTCAGATCATGAG+AGG | - | chr5_2:10929231-10929250 | None:intergenic | 35.0% |
| ! | TAATCCAGAAGTATAGCTGT+TGG | + | chr5_2:10929375-10929394 | Msa0756590:three_prime_UTR | 35.0% |
| ATTACCAACAGCTATACTTC+TGG | - | chr5_2:10929382-10929401 | None:intergenic | 35.0% | |
| AGAAAAATGGCGACGAACAT+TGG | + | chr5_2:10927126-10927145 | Msa0756590:exon | 40.0% | |
| ! | GTAGATCTGAAATCCTCTCT+TGG | + | chr5_2:10927175-10927194 | Msa0756590:CDS | 40.0% |
| GAGTTGAATTGATCCAAGAG+AGG | - | chr5_2:10927191-10927210 | None:intergenic | 40.0% | |
| AATTGGAACCTCTTCGACTT+TGG | - | chr5_2:10927229-10927248 | None:intergenic | 40.0% | |
| TTATGCATCGGAACAATTCC+AGG | - | chr5_2:10927414-10927433 | None:intergenic | 40.0% | |
| TGGAATTGTTCCGATGCATA+AGG | + | chr5_2:10927413-10927432 | Msa0756590:CDS | 40.0% | |
| ACTGTATCGAAGTCTTCTTG+TGG | + | chr5_2:10928109-10928128 | Msa0756590:intron | 40.0% | |
| TCGAAGTCTTCTTGTGGTAT+TGG | + | chr5_2:10928115-10928134 | Msa0756590:intron | 40.0% | |
| TACTGCAAACCATGCAAATC+CGG | + | chr5_2:10928583-10928602 | Msa0756590:CDS | 40.0% | |
| AGTACCTGTTGATCATATGC+AGG | - | chr5_2:10928659-10928678 | None:intergenic | 40.0% | |
| TCCTGAAGTAGAACATTCAC+CGG | + | chr5_2:10928853-10928872 | Msa0756590:CDS | 40.0% | |
| TGATGACAATGGATCTGAGT+TGG | + | chr5_2:10929002-10929021 | Msa0756590:CDS | 40.0% | |
| TATGCTTACTGCTGATCTAC+AGG | + | chr5_2:10929038-10929057 | Msa0756590:CDS | 40.0% | |
| CACAAGCCAAGAAATAACAC+TGG | - | chr5_2:10929452-10929471 | None:intergenic | 40.0% | |
| GGCGACGAACATTGGAATAA+TGG | + | chr5_2:10927134-10927153 | Msa0756590:CDS | 45.0% | |
| ATGGACACTGCATACTTCGT+CGG | + | chr5_2:10927153-10927172 | Msa0756590:CDS | 45.0% | |
| CAATCTCTCCAAAGTCGAAG+AGG | + | chr5_2:10927218-10927237 | Msa0756590:CDS | 45.0% | |
| ! | TTCGATTTTCGGTTGCGTTC+TGG | + | chr5_2:10927528-10927547 | Msa0756590:intron | 45.0% |
| GCATATTGAGGTTAGCAAGC+TGG | + | chr5_2:10927628-10927647 | Msa0756590:intron | 45.0% | |
| AGGAAGACCGTTGGATAATC+TGG | + | chr5_2:10927655-10927674 | Msa0756590:CDS | 45.0% | |
| CTGTTAATTCTGGACAGCAC+AGG | + | chr5_2:10927711-10927730 | Msa0756590:CDS | 45.0% | |
| ACACTCTCAACCCTCAAACA+AGG | + | chr5_2:10928499-10928518 | Msa0756590:CDS | 45.0% | |
| CACTCTCAACCCTCAAACAA+GGG | + | chr5_2:10928500-10928519 | Msa0756590:CDS | 45.0% | |
| ! | GTAGAACCACCCTTGTTTGA+GGG | - | chr5_2:10928512-10928531 | None:intergenic | 45.0% |
| ! | AGTAGAACCACCCTTGTTTG+AGG | - | chr5_2:10928513-10928532 | None:intergenic | 45.0% |
| ATCATTCCTTCGAGCAGTGT+GGG | - | chr5_2:10928558-10928577 | None:intergenic | 45.0% | |
| AGCTCCTGCATATGATCAAC+AGG | + | chr5_2:10928652-10928671 | Msa0756590:CDS | 45.0% | |
| ACCGGTGAATGTTCTACTTC+AGG | - | chr5_2:10928857-10928876 | None:intergenic | 45.0% | |
| TCCTCAGAAACCTCAGCAAT+GGG | - | chr5_2:10929081-10929100 | None:intergenic | 45.0% | |
| AAAGAACTTTGCCAACCCTG+AGG | + | chr5_2:10929128-10929147 | Msa0756590:CDS | 45.0% | |
| ACATCAGAAAGCCTTCGTCT+AGG | - | chr5_2:10929183-10929202 | None:intergenic | 45.0% | |
| CGGAACAATTCCAGGATGAG+CGG | - | chr5_2:10927406-10927425 | None:intergenic | 50.0% | |
| GAGGTTAGCAAGCTGGTGAA+AGG | + | chr5_2:10927635-10927654 | Msa0756590:CDS | 50.0% | |
| CACATCTCTCTCCTCTCCAA+AGG | - | chr5_2:10928443-10928462 | None:intergenic | 50.0% | |
| TCTCAACCCTCAAACAAGGG+TGG | + | chr5_2:10928503-10928522 | Msa0756590:CDS | 50.0% | |
| ! | AGGGTGGTTCTACTTCACAC+AGG | + | chr5_2:10928519-10928538 | Msa0756590:CDS | 50.0% |
| AATCTTCCCACACTGCTCGA+AGG | + | chr5_2:10928549-10928568 | Msa0756590:CDS | 50.0% | |
| CATCATTCCTTCGAGCAGTG+TGG | - | chr5_2:10928559-10928578 | None:intergenic | 50.0% | |
| TGCAAACCATGCAAATCCGG+TGG | + | chr5_2:10928586-10928605 | Msa0756590:CDS | 50.0% | |
| TTGCAACCACCGGATTTGCA+TGG | - | chr5_2:10928595-10928614 | None:intergenic | 50.0% | |
| CCTCAGAAACCTCAGCAATG+GGG | - | chr5_2:10929080-10929099 | None:intergenic | 50.0% | |
| CTCCTCAGAAACCTCAGCAA+TGG | - | chr5_2:10929082-10929101 | None:intergenic | 50.0% | |
| TCATGAGAGGTGACCCGTTA+TGG | - | chr5_2:10929218-10929237 | None:intergenic | 50.0% | |
| GGTCACCTCTCATGATCTGA+AGG | + | chr5_2:10929223-10929242 | Msa0756590:CDS | 50.0% | |
| CTTCTTGATGCCGCTCATCC+TGG | + | chr5_2:10927393-10927412 | Msa0756590:CDS | 55.0% | |
| GCTGGTGAAAGGAAGACCGT+TGG | + | chr5_2:10927646-10927665 | Msa0756590:CDS | 55.0% | |
| TGGAGAGGAGAGAGATGTGC+AGG | + | chr5_2:10928444-10928463 | Msa0756590:CDS | 55.0% | |
| GGAGAGGAGAGAGATGTGCA+GGG | + | chr5_2:10928445-10928464 | Msa0756590:CDS | 55.0% | |
| GAGAGGAGAGAGATGTGCAG+GGG | + | chr5_2:10928446-10928465 | Msa0756590:CDS | 55.0% | |
| GCAGTGTGGGAAGATTGAGG+AGG | - | chr5_2:10928545-10928564 | None:intergenic | 55.0% | |
| CGAGCAGTGTGGGAAGATTG+AGG | - | chr5_2:10928548-10928567 | None:intergenic | 55.0% | |
| ! | CTAGCGGCTTTTGCAACCAC+CGG | - | chr5_2:10928605-10928624 | None:intergenic | 55.0% |
| ACCTCAGCAATGGGGCTCAA+TGG | - | chr5_2:10929072-10929091 | None:intergenic | 55.0% | |
| CCCCATTGCTGAGGTTTCTG+AGG | + | chr5_2:10929077-10929096 | Msa0756590:CDS | 55.0% | |
| AGCAGCATCAACCTCAGGGT+TGG | - | chr5_2:10929142-10929161 | None:intergenic | 55.0% | |
| !! | AACCCTGAGGTTGATGCTGC+TGG | + | chr5_2:10929141-10929160 | Msa0756590:CDS | 55.0% |
| TGCCAGCAGCATCAACCTCA+GGG | - | chr5_2:10929146-10929165 | None:intergenic | 55.0% | |
| AGGAGAGAGATGTGCAGGGG+AGG | + | chr5_2:10928449-10928468 | Msa0756590:CDS | 60.0% | |
| AGAGAGATGTGCAGGGGAGG+AGG | + | chr5_2:10928452-10928471 | Msa0756590:CDS | 60.0% | |
| CGGTGGTTGCAAAAGCCGCT+AGG | + | chr5_2:10928603-10928622 | Msa0756590:CDS | 60.0% | |
| AGCTGCAGCAACAGTGGCGA+CGG | - | chr5_2:10928636-10928655 | None:intergenic | 60.0% | |
| TGCAGGAGCTGCAGCAACAG+TGG | - | chr5_2:10928642-10928661 | None:intergenic | 60.0% | |
| GCCATTGAGCCCCATTGCTG+AGG | + | chr5_2:10929068-10929087 | Msa0756590:CDS | 60.0% | |
| GTGCCAGCAGCATCAACCTC+AGG | - | chr5_2:10929147-10929166 | None:intergenic | 60.0% | |
| GCAACAGTGGCGACGGCAGC+AGG | - | chr5_2:10928629-10928648 | None:intergenic | 70.0% | |
| GGCGACGGCAGCAGGCCTAG+CGG | - | chr5_2:10928621-10928640 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 10927057 | 10929523 | 10927057 | ID=Msa0756590;Name=Msa0756590 |
| chr5_2 | mRNA | 10927057 | 10929523 | 10927057 | ID=Msa0756590-mRNA-1;Parent=Msa0756590;Name=Msa0756590-mRNA-1;_AED=0.11;_eAED=0.11;_QI=75|1|1|1|0.83|0.71|7|261|332 |
| chr5_2 | exon | 10927057 | 10927239 | 10927057 | ID=Msa0756590-mRNA-1:exon:4924;Parent=Msa0756590-mRNA-1 |
| chr5_2 | exon | 10927366 | 10927521 | 10927366 | ID=Msa0756590-mRNA-1:exon:4925;Parent=Msa0756590-mRNA-1 |
| chr5_2 | exon | 10927629 | 10927732 | 10927629 | ID=Msa0756590-mRNA-1:exon:4926;Parent=Msa0756590-mRNA-1 |
| chr5_2 | exon | 10928433 | 10928673 | 10928433 | ID=Msa0756590-mRNA-1:exon:4927;Parent=Msa0756590-mRNA-1 |
| chr5_2 | exon | 10928761 | 10928874 | 10928761 | ID=Msa0756590-mRNA-1:exon:4928;Parent=Msa0756590-mRNA-1 |
| chr5_2 | exon | 10928967 | 10929318 | 10928967 | ID=Msa0756590-mRNA-1:exon:4929;Parent=Msa0756590-mRNA-1 |
| chr5_2 | exon | 10929339 | 10929523 | 10929339 | ID=Msa0756590-mRNA-1:exon:4930;Parent=Msa0756590-mRNA-1 |
| chr5_2 | five_prime_UTR | 10927057 | 10927131 | 10927057 | ID=Msa0756590-mRNA-1:five_prime_utr;Parent=Msa0756590-mRNA-1 |
| chr5_2 | CDS | 10927132 | 10927239 | 10927132 | ID=Msa0756590-mRNA-1:cds;Parent=Msa0756590-mRNA-1 |
| chr5_2 | CDS | 10927366 | 10927521 | 10927366 | ID=Msa0756590-mRNA-1:cds;Parent=Msa0756590-mRNA-1 |
| chr5_2 | CDS | 10927629 | 10927732 | 10927629 | ID=Msa0756590-mRNA-1:cds;Parent=Msa0756590-mRNA-1 |
| chr5_2 | CDS | 10928433 | 10928673 | 10928433 | ID=Msa0756590-mRNA-1:cds;Parent=Msa0756590-mRNA-1 |
| chr5_2 | CDS | 10928761 | 10928874 | 10928761 | ID=Msa0756590-mRNA-1:cds;Parent=Msa0756590-mRNA-1 |
| chr5_2 | CDS | 10928967 | 10929242 | 10928967 | ID=Msa0756590-mRNA-1:cds;Parent=Msa0756590-mRNA-1 |
| chr5_2 | three_prime_UTR | 10929243 | 10929318 | 10929243 | ID=Msa0756590-mRNA-1:three_prime_utr;Parent=Msa0756590-mRNA-1 |
| chr5_2 | three_prime_UTR | 10929339 | 10929523 | 10929339 | ID=Msa0756590-mRNA-1:three_prime_utr;Parent=Msa0756590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
