AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0005890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0005890 MtrunA17_Chr1g0150131 94.706 170 6 1 1 170 1 167 1.09e-107 305
Msa0005890 MtrunA17_Chr3g0136871 64.667 150 46 3 25 174 24 166 4.28e-63 192
Msa0005890 MtrunA17_Chr7g0256441 56.757 148 40 4 25 172 24 147 7.31e-50 157
Msa0005890 MtrunA17_Chr8g0360371 46.281 121 62 2 12 132 8 125 8.38e-36 126
Msa0005890 MtrunA17_Chr2g0317231 43.836 146 78 3 10 155 8 149 2.33e-34 127
Msa0005890 MtrunA17_Chr4g0041811 48.624 109 55 1 24 132 28 135 7.04e-34 119
Msa0005890 MtrunA17_Chr6g0458331 48.182 110 54 2 21 129 29 136 1.13e-31 112
Msa0005890 MtrunA17_Chr2g0324711 40.719 167 80 7 10 164 10 169 3.79e-29 110
Msa0005890 MtrunA17_Chr4g0040291 43.846 130 69 3 25 153 22 148 7.40e-29 105
Msa0005890 MtrunA17_Chr2g0324721 40.411 146 82 3 25 168 24 166 1.04e-28 105
Msa0005890 MtrunA17_Chr2g0331181 39.726 146 75 6 19 162 18 152 3.60e-28 103
Msa0005890 MtrunA17_Chr4g0062341 41.176 119 61 4 16 132 24 135 1.34e-26 99.4
Msa0005890 MtrunA17_Chr4g0062311 41.176 119 61 4 16 132 24 135 1.34e-26 99.4
Msa0005890 MtrunA17_Chr4g0039721 36.913 149 81 5 1 143 1 142 2.14e-26 99.0
Msa0005890 MtrunA17_Chr8g0385021 39.855 138 80 2 12 149 7 141 1.43e-25 99.0
Msa0005890 MtrunA17_Chr2g0319611 40.909 110 62 3 25 132 23 131 1.53e-25 98.6
Msa0005890 MtrunA17_Chr8g0385031 42.857 119 63 3 10 128 9 122 4.05e-24 95.5
Msa0005890 MtrunA17_Chr4g0073901 37.302 126 77 1 5 128 4 129 7.93e-24 92.4
Msa0005890 MtrunA17_Chr4g0073921 39.844 128 73 3 5 129 4 130 1.27e-23 94.0
Msa0005890 MtrunA17_Chr2g0323021 37.342 158 89 5 12 168 8 156 1.13e-22 90.5
Msa0005890 MtrunA17_Chr1g0188981 38.776 98 59 1 32 128 32 129 1.17e-21 87.0
Msa0005890 MtrunA17_Chr4g0064041 39.175 97 59 0 32 128 194 290 2.69e-21 89.0
Msa0005890 MtrunA17_Chr4g0064041 31.852 135 89 2 12 146 13 144 1.31e-17 79.0
Msa0005890 MtrunA17_Chr8g0385041 39.844 128 64 5 30 148 27 150 4.65e-21 87.8
Msa0005890 MtrunA17_Chr5g0394321 27.160 162 110 3 12 173 11 164 2.56e-19 80.5
Msa0005890 MtrunA17_Chr1g0205701 35.833 120 75 1 49 166 43 162 1.60e-18 78.6
Msa0005890 MtrunA17_Chr2g0306461 38.333 120 63 4 17 128 9 125 1.16e-17 76.6
Msa0005890 MtrunA17_Chr6g0481491 34.211 114 68 3 17 130 18 124 2.08e-17 76.3
Msa0005890 MtrunA17_Chr3g0127521 32.386 176 84 5 12 163 8 172 2.23e-17 77.4
Msa0005890 MtrunA17_Chr4g0064031 34.375 96 61 2 25 118 25 120 3.89e-17 74.3
Msa0005890 MtrunA17_Chr8g0387804 33.333 120 75 2 13 128 9 127 1.05e-16 72.4
Msa0005890 MtrunA17_Chr8g0335531 35.938 128 73 4 5 130 2 122 1.02e-15 71.2
Msa0005890 MtrunA17_Chr8g0335571 35.938 128 73 4 5 130 2 122 4.38e-15 69.7
Msa0005890 MtrunA17_Chr4g0033131 27.869 122 77 3 17 128 9 129 5.38e-15 68.9
Msa0005890 MtrunA17_Chr4g0033531 27.869 122 77 3 17 128 9 129 5.38e-15 68.9
Msa0005890 MtrunA17_Chr8g0379081 39.091 110 57 3 75 174 1 110 6.01e-15 67.8
Msa0005890 MtrunA17_Chr7g0253641 33.333 126 75 3 13 134 7 127 1.79e-14 68.6
Msa0005890 MtrunA17_Chr1g0196801 34.021 97 59 2 32 128 26 117 1.98e-14 67.8
Msa0005890 MtrunA17_Chr2g0289741 34.426 122 65 3 44 164 39 146 2.62e-14 67.0
Msa0005890 MtrunA17_Chr6g0483981 33.571 140 82 5 37 172 35 167 4.93e-14 68.9
Msa0005890 MtrunA17_Chr6g0459441 37.755 98 55 4 32 128 29 121 6.18e-14 66.2
Msa0005890 MtrunA17_Chr7g0253631 33.884 121 71 3 12 128 6 121 1.31e-13 66.6
Msa0005890 MtrunA17_Chr7g0253761 30.952 126 78 3 13 134 7 127 5.60e-13 63.5
Msa0005890 MtrunA17_Chr8g0380901 31.897 116 75 2 11 126 7 118 4.23e-12 60.1
Msa0005890 MtrunA17_Chr6g0453921 31.343 134 77 5 7 131 10 137 6.18e-12 60.8
Msa0005890 MtrunA17_Chr3g0132441 39.506 81 48 1 48 128 41 120 7.70e-12 60.8
Msa0005890 MtrunA17_Chr3g0132411 38.272 81 49 1 48 128 80 159 1.03e-11 60.1
Msa0005890 MtrunA17_Chr3g0132431 38.272 81 49 1 48 128 41 120 1.06e-11 60.5
Msa0005890 MtrunA17_Chr3g0132701 36.559 93 54 2 37 128 34 122 8.36e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0005890 AT4G31840.1 50.888 169 73 2 4 172 3 161 3.76e-55 172
Msa0005890 AT2G25060.1 51.852 162 68 4 11 171 15 167 7.74e-53 166
Msa0005890 AT5G25090.1 52.459 122 58 0 11 132 9 130 1.61e-46 150
Msa0005890 AT4G30590.1 52.800 125 55 1 12 132 8 132 8.78e-45 146
Msa0005890 AT5G57920.1 44.521 146 79 2 26 171 21 164 1.81e-43 142
Msa0005890 AT5G57920.2 44.521 146 79 2 26 171 20 163 1.92e-43 142
Msa0005890 AT5G57920.3 44.521 146 79 2 26 171 53 196 2.20e-43 143
Msa0005890 AT2G23990.1 51.064 141 56 3 14 150 10 141 3.44e-41 137
Msa0005890 AT2G23990.2 45.000 160 56 4 14 150 10 160 2.13e-36 126
Msa0005890 AT3G20570.1 40.491 163 83 5 12 164 15 173 7.99e-35 121
Msa0005890 AT5G14345.1 56.842 95 38 2 37 130 24 116 6.08e-31 109
Msa0005890 AT5G53870.2 40.252 159 84 5 10 161 9 163 1.13e-30 114
Msa0005890 AT5G53870.1 40.252 159 84 5 10 161 9 163 1.46e-30 114
Msa0005890 AT3G18590.1 45.833 120 59 4 12 129 12 127 1.49e-28 105
Msa0005890 AT4G28365.1 38.889 162 90 6 13 168 11 169 5.88e-28 103
Msa0005890 AT4G27520.1 43.802 121 64 3 12 132 16 132 8.72e-28 106
Msa0005890 AT4G32490.1 39.837 123 66 3 13 130 11 130 9.52e-25 95.9
Msa0005890 AT1G48940.1 38.095 126 70 3 13 132 6 129 1.27e-24 94.7
Msa0005890 AT1G79800.1 34.459 148 85 4 8 147 8 151 1.37e-21 87.0
Msa0005890 AT2G31050.1 35.461 141 85 3 5 145 6 140 1.54e-21 87.0
Msa0005890 AT1G64640.1 35.043 117 75 1 32 148 36 151 1.30e-20 84.3
Msa0005890 AT2G26720.1 33.094 139 85 3 11 149 12 142 4.64e-19 80.9
Msa0005890 AT2G32300.1 35.714 140 74 5 25 160 23 150 4.66e-19 82.0
Msa0005890 AT2G32300.2 35.714 140 74 5 25 160 53 180 1.66e-18 80.9
Msa0005890 AT5G20230.1 34.426 122 76 3 26 145 23 142 5.14e-17 75.1
Msa0005890 AT5G26330.1 36.250 80 51 0 50 129 43 122 1.14e-15 71.2
Msa0005890 AT5G07475.1 30.000 120 76 3 12 128 10 124 4.57e-14 67.4
Msa0005890 AT3G60270.1 35.354 99 59 2 32 130 29 122 1.12e-13 66.2
Msa0005890 AT1G72230.1 36.782 87 54 1 48 134 38 123 1.27e-13 65.9
Msa0005890 AT3G27200.1 29.839 124 76 3 11 129 5 122 1.27e-12 63.2
Msa0005890 AT1G45063.2 31.967 122 77 3 9 129 11 127 3.99e-12 63.2
Msa0005890 AT1G45063.1 31.933 119 75 3 12 129 14 127 6.52e-12 63.2
Msa0005890 AT1G22480.1 41.333 75 43 1 56 130 42 115 4.45e-11 58.9
Msa0005890 AT3G17675.1 26.804 97 67 1 32 128 35 127 6.59e-11 57.4

Find 42 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCATCTTGTTCTCTTT+TGG 0.177913 1_1:+8686512 Msa0005890:CDS
GCAGAAATTATGGATGATTT+TGG 0.191043 1_1:-8686409 None:intergenic
TCTTAAAGATGCAGAAATTA+TGG 0.244416 1_1:-8686419 None:intergenic
CTGTGGTTGTCATGAGTCTA+AGG 0.276529 1_1:+8687207 Msa0005890:CDS
CCCATCATTGTAGTGTTTGA+TGG 0.297797 1_1:-8687099 None:intergenic
TCTCCACTGATGTAGTAGTA+TGG 0.331847 1_1:-8687152 None:intergenic
AAAGTGAGATTTGATCATTC+TGG 0.347650 1_1:+8687128 Msa0005890:CDS
AATCTGATTCTCTCAACAAA+TGG 0.402045 1_1:+8686622 Msa0005890:CDS
GGAGCAACAGCTGAGCCAGC+TGG 0.404423 1_1:-8687290 None:intergenic
CTACTACATCAGTGGAGAAA+AGG 0.404851 1_1:+8687157 Msa0005890:CDS
CCCATCAAACACTACAATGA+TGG 0.417208 1_1:+8687098 Msa0005890:CDS
CCATCATTGTAGTGTTTGAT+GGG 0.419117 1_1:-8687098 None:intergenic
TGCATGGAAGGTTCCTTCTT+CGG 0.420616 1_1:+8686599 Msa0005890:CDS
TACTTAGATGGTCTCCAACT+TGG 0.420901 1_1:-8686662 None:intergenic
CCTTCACCAGCTGAAGTTGA+TGG 0.422615 1_1:+8687266 Msa0005890:CDS
AAAAGTGAAAATTACTTAGA+TGG 0.435763 1_1:-8686674 None:intergenic
AAAACAGTTGCACCACTTGT+TGG 0.440200 1_1:-8687317 None:intergenic
GCAGCTAAGGATATCTTGCT+TGG 0.450579 1_1:+8686564 Msa0005890:CDS
TACTACATCAGTGGAGAAAA+GGG 0.477152 1_1:+8687158 Msa0005890:CDS
ATCTGATTCTCTCAACAAAT+GGG 0.481996 1_1:+8686623 Msa0005890:CDS
TGTGGTTGTCATGAGTCTAA+GGG 0.500303 1_1:+8687208 Msa0005890:CDS
GTTGCACCACTTGTTGGAGC+TGG 0.502974 1_1:-8687311 None:intergenic
TCAAGTGTTCGTTTCCAAGT+TGG 0.513908 1_1:+8686648 Msa0005890:CDS
AGAGAATCAGATTCCGAAGA+AGG 0.516269 1_1:-8686612 None:intergenic
ACTTCAGCTGGTGAAGGTGC+TGG 0.517037 1_1:-8687260 None:intergenic
CCATCAAACACTACAATGAT+GGG 0.517725 1_1:+8687099 Msa0005890:CDS
GCTGAAGTTGATGGTCCAGC+TGG 0.527675 1_1:+8687275 Msa0005890:CDS
GCTGGACCATCAACTTCAGC+TGG 0.530028 1_1:-8687272 None:intergenic
TCAGTTTGGAAATATGAAGC+TGG 0.536642 1_1:+8687017 Msa0005890:intron
GAAAAGGGTCATTGTGAGAA+GGG 0.553149 1_1:+8687173 Msa0005890:CDS
GTGGTTGTCATGAGTCTAAG+GGG 0.573266 1_1:+8687209 Msa0005890:CDS
CCATCAACTTCAGCTGGTGA+AGG 0.581807 1_1:-8687266 None:intergenic
AGAAAAGGGTCATTGTGAGA+AGG 0.594361 1_1:+8687172 Msa0005890:CDS
GTTGCTCCAGCTCCAACAAG+TGG 0.607631 1_1:+8687305 Msa0005890:CDS
GCTAAGGATATCTTGCTTGG+TGG 0.617121 1_1:+8686567 Msa0005890:CDS
GGTCCATACTACTACATCAG+TGG 0.620422 1_1:+8687149 Msa0005890:CDS
TGGCAAAACTGATGCATGGA+AGG 0.623442 1_1:+8686587 Msa0005890:CDS
TGGTTGTCATGAGTCTAAGG+GGG 0.630347 1_1:+8687210 Msa0005890:CDS
TTGGTGGCAAAACTGATGCA+TGG 0.676457 1_1:+8686583 Msa0005890:CDS
GGTTGTCATGAGTCTAAGGG+GGG 0.691450 1_1:+8687211 Msa0005890:CDS
GTTGTCATGAGTCTAAGGGG+GGG 0.700416 1_1:+8687212 Msa0005890:CDS
GAAGGGTCAGAAGCTTACTG+TGG 0.745278 1_1:+8687190 Msa0005890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATTTTTAGTGATAAAAA+AGG - chr1_1:8686713-8686732 None:intergenic 15.0%
!!! ACAATAAAGAAACAATTTTA+AGG - chr1_1:8686777-8686796 None:intergenic 15.0%
!!! AATATAAAAAAATTGGGTTT+TGG - chr1_1:8686877-8686896 None:intergenic 15.0%
!! CATCACATAAAAATAAAAAT+TGG - chr1_1:8686957-8686976 None:intergenic 15.0%
!!! TGAATTTTTAGTGATAAAAA+AGG - chr1_1:8686713-8686732 None:intergenic 15.0%
!!! ACAATAAAGAAACAATTTTA+AGG - chr1_1:8686777-8686796 None:intergenic 15.0%
!!! AATATAAAAAAATTGGGTTT+TGG - chr1_1:8686877-8686896 None:intergenic 15.0%
!! CATCACATAAAAATAAAAAT+TGG - chr1_1:8686957-8686976 None:intergenic 15.0%
!! AAAAGTGAAAATTACTTAGA+TGG - chr1_1:8686677-8686696 None:intergenic 20.0%
!!! TTTTTACATTTTCATCATCT+TGG + chr1_1:8686840-8686859 Msa0005890:intron 20.0%
!! GGTGGAAATATAAAAAAATT+GGG - chr1_1:8686883-8686902 None:intergenic 20.0%
!! TGGTGGAAATATAAAAAAAT+TGG - chr1_1:8686884-8686903 None:intergenic 20.0%
!! AAAAGTGAAAATTACTTAGA+TGG - chr1_1:8686677-8686696 None:intergenic 20.0%
!!! TTTTTACATTTTCATCATCT+TGG + chr1_1:8686840-8686859 Msa0005890:intron 20.0%
!! GGTGGAAATATAAAAAAATT+GGG - chr1_1:8686883-8686902 None:intergenic 20.0%
!! TGGTGGAAATATAAAAAAAT+TGG - chr1_1:8686884-8686903 None:intergenic 20.0%
! TCTTAAAGATGCAGAAATTA+TGG - chr1_1:8686422-8686441 None:intergenic 25.0%
!! TTTTTATATTTCCACCATCT+TGG + chr1_1:8686887-8686906 Msa0005890:intron 25.0%
! TTGAAAACAAAATACCAAGA+TGG - chr1_1:8686904-8686923 None:intergenic 25.0%
! ATGAACAATAAAGTAGTTAG+TGG - chr1_1:8686987-8687006 None:intergenic 25.0%
!!! TCATATTTTTGTTCTCAGTT+TGG + chr1_1:8687003-8687022 Msa0005890:intron 25.0%
! TCTTAAAGATGCAGAAATTA+TGG - chr1_1:8686422-8686441 None:intergenic 25.0%
!! TTTTTATATTTCCACCATCT+TGG + chr1_1:8686887-8686906 Msa0005890:intron 25.0%
! TTGAAAACAAAATACCAAGA+TGG - chr1_1:8686904-8686923 None:intergenic 25.0%
! ATGAACAATAAAGTAGTTAG+TGG - chr1_1:8686987-8687006 None:intergenic 25.0%
!!! TCATATTTTTGTTCTCAGTT+TGG + chr1_1:8687003-8687022 Msa0005890:intron 25.0%
! GCAGAAATTATGGATGATTT+TGG - chr1_1:8686412-8686431 None:intergenic 30.0%
CAACATTTGCAGAAAAACAA+TGG + chr1_1:8686476-8686495 Msa0005890:exon 30.0%
! TTCATCATCTTGTTCTCTTT+TGG + chr1_1:8686512-8686531 Msa0005890:CDS 30.0%
!! TTGGTTCTTTTTGTTCTCTT+TGG + chr1_1:8686531-8686550 Msa0005890:CDS 30.0%
AATCTGATTCTCTCAACAAA+TGG + chr1_1:8686622-8686641 Msa0005890:CDS 30.0%
ATCTGATTCTCTCAACAAAT+GGG + chr1_1:8686623-8686642 Msa0005890:CDS 30.0%
AAAACAAAATACCAAGATGG+TGG - chr1_1:8686901-8686920 None:intergenic 30.0%
AAAGTGAGATTTGATCATTC+TGG + chr1_1:8687128-8687147 Msa0005890:CDS 30.0%
! GCAGAAATTATGGATGATTT+TGG - chr1_1:8686412-8686431 None:intergenic 30.0%
CAACATTTGCAGAAAAACAA+TGG + chr1_1:8686476-8686495 Msa0005890:exon 30.0%
! TTCATCATCTTGTTCTCTTT+TGG + chr1_1:8686512-8686531 Msa0005890:CDS 30.0%
!! TTGGTTCTTTTTGTTCTCTT+TGG + chr1_1:8686531-8686550 Msa0005890:CDS 30.0%
AATCTGATTCTCTCAACAAA+TGG + chr1_1:8686622-8686641 Msa0005890:CDS 30.0%
ATCTGATTCTCTCAACAAAT+GGG + chr1_1:8686623-8686642 Msa0005890:CDS 30.0%
AAAACAAAATACCAAGATGG+TGG - chr1_1:8686901-8686920 None:intergenic 30.0%
AAAGTGAGATTTGATCATTC+TGG + chr1_1:8687128-8687147 Msa0005890:CDS 30.0%
ATTTGCAGAAAAACAATGGC+TGG + chr1_1:8686480-8686499 Msa0005890:exon 35.0%
TCAGTTTGGAAATATGAAGC+TGG + chr1_1:8687017-8687036 Msa0005890:intron 35.0%
! TTCTGTTTTGCAAGTGAGTA+AGG + chr1_1:8687046-8687065 Msa0005890:CDS 35.0%
CCATCATTGTAGTGTTTGAT+GGG - chr1_1:8687101-8687120 None:intergenic 35.0%
CCATCAAACACTACAATGAT+GGG + chr1_1:8687099-8687118 Msa0005890:CDS 35.0%
TACTACATCAGTGGAGAAAA+GGG + chr1_1:8687158-8687177 Msa0005890:CDS 35.0%
ATTTGCAGAAAAACAATGGC+TGG + chr1_1:8686480-8686499 Msa0005890:exon 35.0%
TCAGTTTGGAAATATGAAGC+TGG + chr1_1:8687017-8687036 Msa0005890:intron 35.0%
! TTCTGTTTTGCAAGTGAGTA+AGG + chr1_1:8687046-8687065 Msa0005890:CDS 35.0%
CCATCATTGTAGTGTTTGAT+GGG - chr1_1:8687101-8687120 None:intergenic 35.0%
CCATCAAACACTACAATGAT+GGG + chr1_1:8687099-8687118 Msa0005890:CDS 35.0%
TACTACATCAGTGGAGAAAA+GGG + chr1_1:8687158-8687177 Msa0005890:CDS 35.0%
AGAGAATCAGATTCCGAAGA+AGG - chr1_1:8686615-8686634 None:intergenic 40.0%
TCAAGTGTTCGTTTCCAAGT+TGG + chr1_1:8686648-8686667 Msa0005890:CDS 40.0%
TACTTAGATGGTCTCCAACT+TGG - chr1_1:8686665-8686684 None:intergenic 40.0%
CCCATCAAACACTACAATGA+TGG + chr1_1:8687098-8687117 Msa0005890:CDS 40.0%
CCCATCATTGTAGTGTTTGA+TGG - chr1_1:8687102-8687121 None:intergenic 40.0%
TCTCCACTGATGTAGTAGTA+TGG - chr1_1:8687155-8687174 None:intergenic 40.0%
CTACTACATCAGTGGAGAAA+AGG + chr1_1:8687157-8687176 Msa0005890:CDS 40.0%
AGAAAAGGGTCATTGTGAGA+AGG + chr1_1:8687172-8687191 Msa0005890:CDS 40.0%
GAAAAGGGTCATTGTGAGAA+GGG + chr1_1:8687173-8687192 Msa0005890:CDS 40.0%
TGTGGTTGTCATGAGTCTAA+GGG + chr1_1:8687208-8687227 Msa0005890:CDS 40.0%
GCTGGTGAAAAAGCAACAAT+GGG - chr1_1:8687245-8687264 None:intergenic 40.0%
TGCTGGTGAAAAAGCAACAA+TGG - chr1_1:8687246-8687265 None:intergenic 40.0%
AAAACAGTTGCACCACTTGT+TGG - chr1_1:8687320-8687339 None:intergenic 40.0%
AGAGAATCAGATTCCGAAGA+AGG - chr1_1:8686615-8686634 None:intergenic 40.0%
TCAAGTGTTCGTTTCCAAGT+TGG + chr1_1:8686648-8686667 Msa0005890:CDS 40.0%
TACTTAGATGGTCTCCAACT+TGG - chr1_1:8686665-8686684 None:intergenic 40.0%
CCCATCAAACACTACAATGA+TGG + chr1_1:8687098-8687117 Msa0005890:CDS 40.0%
CCCATCATTGTAGTGTTTGA+TGG - chr1_1:8687102-8687121 None:intergenic 40.0%
TCTCCACTGATGTAGTAGTA+TGG - chr1_1:8687155-8687174 None:intergenic 40.0%
CTACTACATCAGTGGAGAAA+AGG + chr1_1:8687157-8687176 Msa0005890:CDS 40.0%
AGAAAAGGGTCATTGTGAGA+AGG + chr1_1:8687172-8687191 Msa0005890:CDS 40.0%
GAAAAGGGTCATTGTGAGAA+GGG + chr1_1:8687173-8687192 Msa0005890:CDS 40.0%
TGTGGTTGTCATGAGTCTAA+GGG + chr1_1:8687208-8687227 Msa0005890:CDS 40.0%
GCTGGTGAAAAAGCAACAAT+GGG - chr1_1:8687245-8687264 None:intergenic 40.0%
TGCTGGTGAAAAAGCAACAA+TGG - chr1_1:8687246-8687265 None:intergenic 40.0%
AAAACAGTTGCACCACTTGT+TGG - chr1_1:8687320-8687339 None:intergenic 40.0%
! TGGTTGTGCTTTTGCAGCTA+AGG + chr1_1:8686551-8686570 Msa0005890:CDS 45.0%
GCAGCTAAGGATATCTTGCT+TGG + chr1_1:8686564-8686583 Msa0005890:CDS 45.0%
GCTAAGGATATCTTGCTTGG+TGG + chr1_1:8686567-8686586 Msa0005890:CDS 45.0%
! TTGGTGGCAAAACTGATGCA+TGG + chr1_1:8686583-8686602 Msa0005890:CDS 45.0%
TGGCAAAACTGATGCATGGA+AGG + chr1_1:8686587-8686606 Msa0005890:CDS 45.0%
TGCATGGAAGGTTCCTTCTT+CGG + chr1_1:8686599-8686618 Msa0005890:CDS 45.0%
GGTCCATACTACTACATCAG+TGG + chr1_1:8687149-8687168 Msa0005890:CDS 45.0%
CTGTGGTTGTCATGAGTCTA+AGG + chr1_1:8687207-8687226 Msa0005890:CDS 45.0%
GTGGTTGTCATGAGTCTAAG+GGG + chr1_1:8687209-8687228 Msa0005890:CDS 45.0%
TGGTTGTCATGAGTCTAAGG+GGG + chr1_1:8687210-8687229 Msa0005890:CDS 45.0%
! AGTGGTGCAACTGTTTTGCA+AGG + chr1_1:8687323-8687342 Msa0005890:CDS 45.0%
! TGGTTGTGCTTTTGCAGCTA+AGG + chr1_1:8686551-8686570 Msa0005890:CDS 45.0%
GCAGCTAAGGATATCTTGCT+TGG + chr1_1:8686564-8686583 Msa0005890:CDS 45.0%
GCTAAGGATATCTTGCTTGG+TGG + chr1_1:8686567-8686586 Msa0005890:CDS 45.0%
! TTGGTGGCAAAACTGATGCA+TGG + chr1_1:8686583-8686602 Msa0005890:CDS 45.0%
TGGCAAAACTGATGCATGGA+AGG + chr1_1:8686587-8686606 Msa0005890:CDS 45.0%
TGCATGGAAGGTTCCTTCTT+CGG + chr1_1:8686599-8686618 Msa0005890:CDS 45.0%
GGTCCATACTACTACATCAG+TGG + chr1_1:8687149-8687168 Msa0005890:CDS 45.0%
CTGTGGTTGTCATGAGTCTA+AGG + chr1_1:8687207-8687226 Msa0005890:CDS 45.0%
GTGGTTGTCATGAGTCTAAG+GGG + chr1_1:8687209-8687228 Msa0005890:CDS 45.0%
TGGTTGTCATGAGTCTAAGG+GGG + chr1_1:8687210-8687229 Msa0005890:CDS 45.0%
! AGTGGTGCAACTGTTTTGCA+AGG + chr1_1:8687323-8687342 Msa0005890:CDS 45.0%
GAAGGGTCAGAAGCTTACTG+TGG + chr1_1:8687190-8687209 Msa0005890:CDS 50.0%
GGTTGTCATGAGTCTAAGGG+GGG + chr1_1:8687211-8687230 Msa0005890:CDS 50.0%
GTTGTCATGAGTCTAAGGGG+GGG + chr1_1:8687212-8687231 Msa0005890:CDS 50.0%
CCATCAACTTCAGCTGGTGA+AGG - chr1_1:8687269-8687288 None:intergenic 50.0%
CCTTCACCAGCTGAAGTTGA+TGG + chr1_1:8687266-8687285 Msa0005890:CDS 50.0%
! GGTGCAACTGTTTTGCAAGG+TGG + chr1_1:8687326-8687345 Msa0005890:CDS 50.0%
! GCAACTGTTTTGCAAGGTGG+TGG + chr1_1:8687329-8687348 Msa0005890:CDS 50.0%
GAAGGGTCAGAAGCTTACTG+TGG + chr1_1:8687190-8687209 Msa0005890:CDS 50.0%
GGTTGTCATGAGTCTAAGGG+GGG + chr1_1:8687211-8687230 Msa0005890:CDS 50.0%
GTTGTCATGAGTCTAAGGGG+GGG + chr1_1:8687212-8687231 Msa0005890:CDS 50.0%
CCATCAACTTCAGCTGGTGA+AGG - chr1_1:8687269-8687288 None:intergenic 50.0%
CCTTCACCAGCTGAAGTTGA+TGG + chr1_1:8687266-8687285 Msa0005890:CDS 50.0%
! GGTGCAACTGTTTTGCAAGG+TGG + chr1_1:8687326-8687345 Msa0005890:CDS 50.0%
! GCAACTGTTTTGCAAGGTGG+TGG + chr1_1:8687329-8687348 Msa0005890:CDS 50.0%
TGAGTCTAAGGGGGGGAAGT+AGG + chr1_1:8687219-8687238 Msa0005890:CDS 55.0%
! ACTTCAGCTGGTGAAGGTGC+TGG - chr1_1:8687263-8687282 None:intergenic 55.0%
GCTGGACCATCAACTTCAGC+TGG - chr1_1:8687275-8687294 None:intergenic 55.0%
!! GCTGAAGTTGATGGTCCAGC+TGG + chr1_1:8687275-8687294 Msa0005890:CDS 55.0%
GTTGCTCCAGCTCCAACAAG+TGG + chr1_1:8687305-8687324 Msa0005890:CDS 55.0%
! GTTGCACCACTTGTTGGAGC+TGG - chr1_1:8687314-8687333 None:intergenic 55.0%
TGAGTCTAAGGGGGGGAAGT+AGG + chr1_1:8687219-8687238 Msa0005890:CDS 55.0%
! ACTTCAGCTGGTGAAGGTGC+TGG - chr1_1:8687263-8687282 None:intergenic 55.0%
GCTGGACCATCAACTTCAGC+TGG - chr1_1:8687275-8687294 None:intergenic 55.0%
!! GCTGAAGTTGATGGTCCAGC+TGG + chr1_1:8687275-8687294 Msa0005890:CDS 55.0%
GTTGCTCCAGCTCCAACAAG+TGG + chr1_1:8687305-8687324 Msa0005890:CDS 55.0%
! GTTGCACCACTTGTTGGAGC+TGG - chr1_1:8687314-8687333 None:intergenic 55.0%
GGAGCAACAGCTGAGCCAGC+TGG - chr1_1:8687293-8687312 None:intergenic 65.0%
GGAGCAACAGCTGAGCCAGC+TGG - chr1_1:8687293-8687312 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 8686400 8687355 8686400 ID=Msa0005890;Name=Msa0005890
chr1_1 mRNA 8686400 8687355 8686400 ID=Msa0005890-mRNA-1;Parent=Msa0005890;Name=Msa0005890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=95|1|1|1|1|1|2|0|174
chr1_1 exon 8686400 8686681 8686400 ID=Msa0005890-mRNA-1:exon:3070;Parent=Msa0005890-mRNA-1
chr1_1 exon 8687021 8687355 8687021 ID=Msa0005890-mRNA-1:exon:3071;Parent=Msa0005890-mRNA-1
chr1_1 five_prime_UTR 8686400 8686494 8686400 ID=Msa0005890-mRNA-1:five_prime_utr;Parent=Msa0005890-mRNA-1
chr1_1 CDS 8686495 8686681 8686495 ID=Msa0005890-mRNA-1:cds;Parent=Msa0005890-mRNA-1
chr1_1 CDS 8687021 8687355 8687021 ID=Msa0005890-mRNA-1:cds;Parent=Msa0005890-mRNA-1
Gene Sequence

>Msa0005890

ATGGCTGGTTCATCTTCTTCATCATCTTGTTCTCTTTTGGTTCTTTTTGTTCTCTTTGGTTGTGCTTTTGCAGCTAAGGATATCTTGCTTGGTGGCAAAACTGATGCATGGAAGGTTCCTTCTTCGGAATCTGATTCTCTCAACAAATGGGCTTCAAGTGTTCGTTTCCAAGTTGGAGACCATCTAATTTGGAAATATGAAGCTGGAAAAGATTCTGTTTTGCAAGTGAGTAAGGAAGATTATGATAGCTGCAACATCTCGAAACCCATCAAACACTACAATGATGGGAACACTAAAGTGAGATTTGATCATTCTGGTCCATACTACTACATCAGTGGAGAAAAGGGTCATTGTGAGAAGGGTCAGAAGCTTACTGTGGTTGTCATGAGTCTAAGGGGGGGAAGTAGGCCCATTGTTGCTTTTTCACCAGCACCTTCACCAGCTGAAGTTGATGGTCCAGCTGGCTCAGCTGTTGCTCCAGCTCCAACAAGTGGTGCAACTGTTTTGCAAGGTGGTGGTGTA

Protein sequence

>Msa0005890

MAGSSSSSSCSLLVLFVLFGCAFAAKDILLGGKTDAWKVPSSESDSLNKWASSVRFQVGDHLIWKYEAGKDSVLQVSKEDYDSCNISKPIKHYNDGNTKVRFDHSGPYYYISGEKGHCEKGQKLTVVVMSLRGGSRPIVAFSPAPSPAEVDGPAGSAVAPAPTSGATVLQGGGV