AlfalfaGEDB | Msa1011840

M. sativa cultivar zhongmu-4 / Msa1011840

KEGG: -
GO: -
PFAM: PF13499.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1011840	XP_013447886.1	88.321	137	5	1	1	126	1	137	2.12e-78	237

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1011840	A0A072TYJ6	88.321	137	5	1	1	126	1	137	1.01e-78	237

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1011790	Msa1011840	0.872654	2.692752e-67	-8.615850e-47
Msa1011820	Msa1011840	0.987278	1.098028e-169	-8.615850e-47
Msa1011840	Msa1011860	0.877833	4.575955e-69	-8.615850e-47
Msa1011840	Msa1053290	0.847809	9.143364e-60	-8.615850e-47
Msa1011840	Msa1053330	0.888199	7.294847e-73	-8.615850e-47
Msa1011840	Msa1053340	0.826579	2.510500e-54	-8.615850e-47
Msa1011840	Msa1095410	0.809401	1.927037e-50	-8.615850e-47
Msa1011840	Msa1142590	0.825904	3.634259e-54	-8.615850e-47
Msa1011840	Msa1142600	0.802828	4.661978e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1011840	MtrunA17_Chr7g0223391	88.321	137	5	1	1	126	18	154	3.63e-82	237
Msa1011840	MtrunA17_Chr7g0223401	83.212	137	12	1	1	126	6	142	4.00e-77	224
Msa1011840	MtrunA17_Chr8g0356181	43.571	140	65	1	1	126	1	140	1.35e-34	116
Msa1011840	MtrunA17_Chr1g0190921	31.452	124	80	1	1	124	1	119	4.90e-12	58.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1011840	AT2G44310.1	45.255	137	62	1	1	124	1	137	1.60e-35	119

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Find 26 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACGAGCAAGCTCATTT+GGG	0.456333	7_1:+16641513	None:intergenic
AAAGATGAGTGTAGAAATTT+TGG	0.159822	7_1:-16641714	None:intergenic
AACACACTTTGGTATTGATG+TGG	0.581840	7_1:-16641543	Msa1011840:CDS
ATGATGCTTGCAATGGCAGA+TGG	0.545635	7_1:-16641410	Msa1011840:CDS
CAGTTTGATCACAACTTGAA+TGG	0.425360	7_1:-16641473	Msa1011840:CDS
CATTTAAGCAGCCAATTTAC+TGG	0.249329	7_1:+16641349	None:intergenic
CGGTTGATCTTGAAGAATTC+AGG	0.278025	7_1:-16641448	Msa1011840:CDS
CTCCTATGATGAGATGTTGA+AGG	0.467641	7_1:-16641591	Msa1011840:CDS
CTCCTTCAACATCTCATCAT+AGG	0.454389	7_1:+16641589	None:intergenic
CTTCTTCATCTTCAAGGAAG+TGG	0.447415	7_1:+16641675	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAATGCTTCTTCATCTTCA+AGG	+	chr7_1:16641396-16641415	None:intergenic	30.0%
TTAATAGCTCGGTAGGAAAT+CGG	-	chr7_1:16641413-16641432	Msa1011840:CDS	35.0%
CAGTTTGATCACAACTTGAA+TGG	-	chr7_1:16641589-16641608	Msa1011840:CDS	35.0%
TGATCTTGAAGAATTCAGGA+AGG	-	chr7_1:16641618-16641637	Msa1011840:CDS	35.0%
TAAGCAAATGATGCTTGCAA+TGG	-	chr7_1:16641645-16641664	Msa1011840:CDS	35.0%
TGAAAGAGAGTCCAGTAAAT+TGG	-	chr7_1:16641702-16641721	Msa1011840:CDS	35.0%
TTCAAGGAAGTGGACAATTG+TGG	+	chr7_1:16641380-16641399	None:intergenic	40.0%
CTTCTTCATCTTCAAGGAAG+TGG	+	chr7_1:16641390-16641409	None:intergenic	40.0%
CTCCTATGATGAGATGTTGA+AGG	-	chr7_1:16641471-16641490	Msa1011840:CDS	40.0%
CTCCTTCAACATCTCATCAT+AGG	+	chr7_1:16641476-16641495	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	16641352	16641732	16641352	ID=Msa1011840;Name=Msa1011840
chr7_1	mRNA	16641352	16641732	16641352	ID=Msa1011840-mRNA-1;Parent=Msa1011840;Name=Msa1011840-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|126
chr7_1	exon	16641352	16641732	16641352	ID=Msa1011840-mRNA-1:exon:4233;Parent=Msa1011840-mRNA-1
chr7_1	CDS	16641352	16641732	16641352	ID=Msa1011840-mRNA-1:cds;Parent=Msa1011840-mRNA-1

Gene Sequence	>Msa1011840 ATGAGTGTAGAAATTTTGGATGGTGCCACAATTGTCCACTTCCTTGAAGATGAAGAAGCATTTAATAGCTCGGTAGGAAATCGGTTCGCTTGCCTCGACACAAATAACGACGGTCTTCTCTCCTATGATGAGATGTTGAAGGAGCTCAAGAGCTTGAGGGTTTTTGAAACACACTTTGGTATTGATGTGGATTCAGACCCAAATGAGCTTGCTCGTGTTTATGAATCTTTGTTCATACAGTTTGATCACAACTTGAATGGCACGGTTGATCTTGAAGAATTCAGGAAGGAAACTAAGCAAATGATGCTTGCAATGGCAGATGGGATGGGTTTCATGCTGAAAATAGCTGTTGAAAGAGAGTCCAGTAAATTGGCTGCTTAA
Protein sequence	>Msa1011840 MSVEILDGATIVHFLEDEEAFNSSVGNRFACLDTNNDGLLSYDEMLKELKSLRVFETHFGIDVDSDPNELARVYESLFIQFDHNLNGTVDLEEFRKETKQMMLAMADGMGFMLKIAVERESSKLAA*