Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1142600 | XP_003621906.2 | 94.161 | 137 | 8 | 0 | 1 | 137 | 34 | 170 | 2.62e-87 | 261 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1142600 | A0A396GZB2 | 94.161 | 137 | 8 | 0 | 1 | 137 | 6 | 142 | 1.29e-87 | 261 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa1142600 | 0.829912 | 3.947121e-55 | -8.615850e-47 |
| Msa0011010 | Msa1142600 | 0.814237 | 1.706342e-51 | -8.615850e-47 |
| Msa0011040 | Msa1142600 | 0.824466 | 7.950841e-54 | -8.615850e-47 |
| Msa0014590 | Msa1142600 | 0.808637 | 2.809102e-50 | -8.615850e-47 |
| Msa0017710 | Msa1142600 | 0.802453 | 5.570374e-49 | -8.615850e-47 |
| Msa0024650 | Msa1142600 | 0.804209 | 2.411347e-49 | -8.615850e-47 |
| Msa0025570 | Msa1142600 | 0.806212 | 9.178983e-50 | -8.615850e-47 |
| Msa0046430 | Msa1142600 | 0.814510 | 1.485501e-51 | -8.615850e-47 |
| Msa0048380 | Msa1142600 | 0.818293 | 2.114275e-52 | -8.615850e-47 |
| Msa0051910 | Msa1142600 | 0.805368 | 1.380890e-49 | -8.615850e-47 |
| Msa0059880 | Msa1142600 | 0.822882 | 1.866977e-53 | -8.615850e-47 |
| Msa0063540 | Msa1142600 | 0.800265 | 1.563104e-48 | -8.615850e-47 |
| Msa0064990 | Msa1142600 | 0.803135 | 4.028665e-49 | -8.615850e-47 |
| Msa0073110 | Msa1142600 | 0.811247 | 7.702112e-51 | -8.615850e-47 |
| Msa0120450 | Msa1142600 | 0.807623 | 4.618325e-50 | -8.615850e-47 |
| Msa0604280 | Msa1142600 | 0.810381 | 1.185571e-50 | -8.615850e-47 |
| Msa0606600 | Msa1142600 | 0.828678 | 7.864876e-55 | -8.615850e-47 |
| Msa0609460 | Msa1142600 | 0.811275 | 7.593955e-51 | -8.615850e-47 |
| Msa0610190 | Msa1142600 | 0.803099 | 4.096929e-49 | -8.615850e-47 |
| Msa0614960 | Msa1142600 | 0.829260 | 5.684639e-55 | -8.615850e-47 |
| Msa0631700 | Msa1142600 | 0.810122 | 1.348542e-50 | -8.615850e-47 |
| Msa0645060 | Msa1142600 | 0.806215 | 9.167895e-50 | -8.615850e-47 |
| Msa0647300 | Msa1142600 | 0.832575 | 8.743994e-56 | -8.615850e-47 |
| Msa0651820 | Msa1142600 | 0.802717 | 4.914694e-49 | -8.615850e-47 |
| Msa0652610 | Msa1142600 | 0.801665 | 8.090512e-49 | -8.615850e-47 |
| Msa0655370 | Msa1142600 | 0.820863 | 5.478672e-53 | -8.615850e-47 |
| Msa0668220 | Msa1142600 | 0.801825 | 7.499544e-49 | -8.615850e-47 |
| Msa0670360 | Msa1142600 | 0.801163 | 1.025087e-48 | -8.615850e-47 |
| Msa0684560 | Msa1142600 | 0.810312 | 1.227209e-50 | -8.615850e-47 |
| Msa0686830 | Msa1142600 | 0.833018 | 6.785490e-56 | -8.615850e-47 |
| Msa0689840 | Msa1142600 | 0.806756 | 7.046969e-50 | -8.615850e-47 |
| Msa0699170 | Msa1142600 | 0.826312 | 2.907353e-54 | -8.615850e-47 |
| Msa0715250 | Msa1142600 | 0.825793 | 3.861134e-54 | -8.615850e-47 |
| Msa0738680 | Msa1142600 | 0.805173 | 1.517143e-49 | -8.615850e-47 |
| Msa0757220 | Msa1142600 | 0.820229 | 7.660810e-53 | -8.615850e-47 |
| Msa0761420 | Msa1142600 | 0.807194 | 5.694584e-50 | -8.615850e-47 |
| Msa0761830 | Msa1142600 | 0.805994 | 1.020403e-49 | -8.615850e-47 |
| Msa0789220 | Msa1142600 | 0.807104 | 5.950586e-50 | -8.615850e-47 |
| Msa0798240 | Msa1142600 | 0.805526 | 1.279632e-49 | -8.615850e-47 |
| Msa0799110 | Msa1142600 | 0.819802 | 9.592434e-53 | -8.615850e-47 |
| Msa0799120 | Msa1142600 | 0.813696 | 2.245864e-51 | -8.615850e-47 |
| Msa0804170 | Msa1142600 | 0.803799 | 2.934375e-49 | -8.615850e-47 |
| Msa0809920 | Msa1142600 | 0.812121 | 4.971596e-51 | -8.615850e-47 |
| Msa0814160 | Msa1142600 | 0.803542 | 3.317542e-49 | -8.615850e-47 |
| Msa0819150 | Msa1142600 | 0.804257 | 2.356662e-49 | -8.615850e-47 |
| Msa0824860 | Msa1142600 | 0.803528 | 3.338623e-49 | -8.615850e-47 |
| Msa0827800 | Msa1142600 | 0.801922 | 7.163414e-49 | -8.615850e-47 |
| Msa0836750 | Msa1142600 | 0.816921 | 4.309770e-52 | -8.615850e-47 |
| Msa0120860 | Msa1142600 | 0.804060 | 2.589837e-49 | -8.615850e-47 |
| Msa0121320 | Msa1142600 | 0.829742 | 4.342927e-55 | -8.615850e-47 |
| Msa0125860 | Msa1142600 | 0.802889 | 4.527916e-49 | -8.615850e-47 |
| Msa0128340 | Msa1142600 | 0.811886 | 5.594835e-51 | -8.615850e-47 |
| Msa0128740 | Msa1142600 | 0.819695 | 1.014650e-52 | -8.615850e-47 |
| Msa0137760 | Msa1142600 | 0.826139 | 3.195815e-54 | -8.615850e-47 |
| Msa0140270 | Msa1142600 | 0.800875 | 1.173552e-48 | -8.615850e-47 |
| Msa0150910 | Msa1142600 | 0.838591 | 2.625674e-57 | -8.615850e-47 |
| Msa0154460 | Msa1142600 | 0.810611 | 1.057535e-50 | -8.615850e-47 |
| Msa0155850 | Msa1142600 | 0.800963 | 1.126229e-48 | -8.615850e-47 |
| Msa0163690 | Msa1142600 | 0.824887 | 6.326901e-54 | -8.615850e-47 |
| Msa0166180 | Msa1142600 | 0.830594 | 2.690115e-55 | -8.615850e-47 |
| Msa0177550 | Msa1142600 | 0.827258 | 1.727381e-54 | -8.615850e-47 |
| Msa0182840 | Msa1142600 | 0.813234 | 2.838215e-51 | -8.615850e-47 |
| Msa0186200 | Msa1142600 | 0.809910 | 1.497720e-50 | -8.615850e-47 |
| Msa0190670 | Msa1142600 | 0.815557 | 8.696568e-52 | -8.615850e-47 |
| Msa0190890 | Msa1142600 | 0.811112 | 8.240995e-51 | -8.615850e-47 |
| Msa0207640 | Msa1142600 | 0.826492 | 2.633320e-54 | -8.615850e-47 |
| Msa0238140 | Msa1142600 | 0.805078 | 1.587753e-49 | -8.615850e-47 |
| Msa0366510 | Msa1142600 | 0.803025 | 4.244023e-49 | -8.615850e-47 |
| Msa0370620 | Msa1142600 | 0.816802 | 4.583145e-52 | -8.615850e-47 |
| Msa0374040 | Msa1142600 | 0.828179 | 1.038136e-54 | -8.615850e-47 |
| Msa0396860 | Msa1142600 | 0.805323 | 1.411046e-49 | -8.615850e-47 |
| Msa0414480 | Msa1142600 | 0.802078 | 6.653522e-49 | -8.615850e-47 |
| Msa0423220 | Msa1142600 | 0.814730 | 1.327893e-51 | -8.615850e-47 |
| Msa0443040 | Msa1142600 | 0.802194 | 6.299330e-49 | -8.615850e-47 |
| Msa0444210 | Msa1142600 | 0.815958 | 7.079654e-52 | -8.615850e-47 |
| Msa0469460 | Msa1142600 | 0.803465 | 3.441747e-49 | -8.615850e-47 |
| Msa0993450 | Msa1142600 | 0.803295 | 3.732576e-49 | -8.615850e-47 |
| Msa0996980 | Msa1142600 | 0.800830 | 1.198756e-48 | -8.615850e-47 |
| Msa1011820 | Msa1142600 | 0.807629 | 4.603225e-50 | -8.615850e-47 |
| Msa1011840 | Msa1142600 | 0.802828 | 4.661978e-49 | -8.615850e-47 |
| Msa1022490 | Msa1142600 | 0.804577 | 2.020494e-49 | -8.615850e-47 |
| Msa1022510 | Msa1142600 | 0.814282 | 1.667724e-51 | -8.615850e-47 |
| Msa1024350 | Msa1142600 | 0.801248 | 9.848063e-49 | -8.615850e-47 |
| Msa1026490 | Msa1142600 | 0.824391 | 8.279282e-54 | -8.615850e-47 |
| Msa1030320 | Msa1142600 | 0.841281 | 5.225097e-58 | -8.615850e-47 |
| Msa1036590 | Msa1142600 | 0.809397 | 1.930530e-50 | -8.615850e-47 |
| Msa1047300 | Msa1142600 | 0.805686 | 1.184116e-49 | -8.615850e-47 |
| Msa1047340 | Msa1142600 | 0.804117 | 2.519538e-49 | -8.615850e-47 |
| Msa1053310 | Msa1142600 | 0.816605 | 5.073515e-52 | -8.615850e-47 |
| Msa1053340 | Msa1142600 | 0.828673 | 7.889511e-55 | -8.615850e-47 |
| Msa1064940 | Msa1142600 | 0.804231 | 2.385971e-49 | -8.615850e-47 |
| Msa1074560 | Msa1142600 | 0.810015 | 1.422070e-50 | -8.615850e-47 |
| Msa1076830 | Msa1142600 | 0.804493 | 2.104277e-49 | -8.615850e-47 |
| Msa1076900 | Msa1142600 | 0.815447 | 9.202331e-52 | -8.615850e-47 |
| Msa1087380 | Msa1142600 | 0.822191 | 2.702540e-53 | -8.615850e-47 |
| Msa1095400 | Msa1142600 | 0.852407 | 4.711096e-61 | -8.615850e-47 |
| Msa1095410 | Msa1142600 | 0.807445 | 5.037019e-50 | -8.615850e-47 |
| Msa1103450 | Msa1142600 | 0.802336 | 5.887707e-49 | -8.615850e-47 |
| Msa1106680 | Msa1142600 | 0.802750 | 4.837237e-49 | -8.615850e-47 |
| Msa0242720 | Msa1142600 | 0.809553 | 1.787935e-50 | -8.615850e-47 |
| Msa0258010 | Msa1142600 | 0.807214 | 5.639240e-50 | -8.615850e-47 |
| Msa0259110 | Msa1142600 | 0.807809 | 4.215075e-50 | -8.615850e-47 |
| Msa0261400 | Msa1142600 | 0.803316 | 3.694399e-49 | -8.615850e-47 |
| Msa0269710 | Msa1142600 | 0.803347 | 3.640399e-49 | -8.615850e-47 |
| Msa0274250 | Msa1142600 | 0.807478 | 4.956150e-50 | -8.615850e-47 |
| Msa0274260 | Msa1142600 | 0.805549 | 1.265087e-49 | -8.615850e-47 |
| Msa0278460 | Msa1142600 | 0.811489 | 6.823910e-51 | -8.615850e-47 |
| Msa0300670 | Msa1142600 | -0.801782 | 7.653334e-49 | -8.615850e-47 |
| Msa0303900 | Msa1142600 | 0.801522 | 8.652347e-49 | -8.615850e-47 |
| Msa0323090 | Msa1142600 | 0.804794 | 1.820165e-49 | -8.615850e-47 |
| Msa0328090 | Msa1142600 | 0.804686 | 1.917902e-49 | -8.615850e-47 |
| Msa0333770 | Msa1142600 | 0.801993 | 6.927453e-49 | -8.615850e-47 |
| Msa0348370 | Msa1142600 | 0.808989 | 2.361619e-50 | -8.615850e-47 |
| Msa0349910 | Msa1142600 | 0.802386 | 5.749152e-49 | -8.615850e-47 |
| Msa1108560 | Msa1142600 | 0.803931 | 2.753829e-49 | -8.615850e-47 |
| Msa1109880 | Msa1142600 | 0.826387 | 2.789512e-54 | -8.615850e-47 |
| Msa1109890 | Msa1142600 | 0.800408 | 1.461660e-48 | -8.615850e-47 |
| Msa1111650 | Msa1142600 | 0.822063 | 2.894394e-53 | -8.615850e-47 |
| Msa1123000 | Msa1142600 | 0.801592 | 8.373701e-49 | -8.615850e-47 |
| Msa1127840 | Msa1142600 | 0.802716 | 4.915608e-49 | -8.615850e-47 |
| Msa1138110 | Msa1142600 | 0.823874 | 1.095276e-53 | -8.615850e-47 |
| Msa1142570 | Msa1142600 | 0.823420 | 1.398598e-53 | -8.615850e-47 |
| Msa1142590 | Msa1142600 | 0.832201 | 1.082329e-55 | -8.615850e-47 |
| Msa1142600 | Msa1146980 | 0.833276 | 5.853925e-56 | -8.615850e-47 |
| Msa1142600 | Msa1147010 | 0.837392 | 5.339484e-57 | -8.615850e-47 |
| Msa1142600 | Msa1157210 | 0.847650 | 1.010913e-59 | -8.615850e-47 |
| Msa1142600 | Msa1163710 | 0.805792 | 1.125042e-49 | -8.615850e-47 |
| Msa1142600 | Msa1170340 | 0.817257 | 3.621903e-52 | -8.615850e-47 |
| Msa1142600 | Msa1186670 | 0.803532 | 3.332764e-49 | -8.615850e-47 |
| Msa1142600 | Msa1191350 | 0.807562 | 4.758051e-50 | -8.615850e-47 |
| Msa1142600 | Msa1214960 | 0.814487 | 1.502936e-51 | -8.615850e-47 |
| Msa1142600 | Msa1223960 | 0.815701 | 8.080374e-52 | -8.615850e-47 |
| Msa1142600 | Msa1223990 | 0.805998 | 1.018170e-49 | -8.615850e-47 |
| Msa1142600 | Msa1233640 | 0.803762 | 2.986897e-49 | -8.615850e-47 |
| Msa1142600 | Msa1238250 | 0.804977 | 1.667318e-49 | -8.615850e-47 |
| Msa1142600 | Msa1263110 | 0.818951 | 1.499084e-52 | -8.615850e-47 |
| Msa1142600 | Msa1263120 | 0.804476 | 2.121019e-49 | -8.615850e-47 |
| Msa1142600 | Msa1317740 | 0.813489 | 2.494544e-51 | -8.615850e-47 |
| Msa1142600 | Msa1319030 | 0.816634 | 4.999126e-52 | -8.615850e-47 |
| Msa1142600 | Msa1322500 | 0.802307 | 5.969699e-49 | -8.615850e-47 |
| Msa1142600 | Msa1343590 | 0.800104 | 1.685038e-48 | -8.615850e-47 |
| Msa1142600 | Msa1345390 | 0.806364 | 8.526207e-50 | -8.615850e-47 |
| Msa1142600 | Msa1357840 | 0.810216 | 1.286745e-50 | -8.615850e-47 |
| Msa1142600 | Msa1357860 | 0.805146 | 1.536998e-49 | -8.615850e-47 |
| Msa1142600 | Msa1373560 | 0.802495 | 5.461481e-49 | -8.615850e-47 |
| Msa1142600 | Msa1376070 | 0.809467 | 1.865101e-50 | -8.615850e-47 |
| Msa1142600 | Msa1377460 | 0.816589 | 5.116518e-52 | -8.615850e-47 |
| Msa1142600 | Msa1377520 | 0.808783 | 2.613206e-50 | -8.615850e-47 |
| Msa1142600 | Msa1395720 | 0.804018 | 2.642168e-49 | -8.615850e-47 |
| Msa1142600 | Msa1409600 | 0.804257 | 2.355917e-49 | -8.615850e-47 |
| Msa1142600 | Msa1413020 | 0.808715 | 2.703387e-50 | -8.615850e-47 |
| Msa1142600 | Msa1429810 | 0.834826 | 2.393902e-56 | -8.615850e-47 |
| Msa1142600 | Msa1455360 | 0.821183 | 4.622546e-53 | -8.615850e-47 |
| Msa1142600 | Msa1458270 | 0.814704 | 1.345542e-51 | -8.615850e-47 |
| Msa1142600 | Msa1459610 | 0.811342 | 7.343393e-51 | -8.615850e-47 |
| Msa1142600 | Msa1461660 | 0.817858 | 2.651370e-52 | -8.615850e-47 |
| Msa0489370 | Msa1142600 | 0.812495 | 4.120084e-51 | -8.615850e-47 |
| Msa0491780 | Msa1142600 | 0.802129 | 6.496393e-49 | -8.615850e-47 |
| Msa0515130 | Msa1142600 | 0.819062 | 1.414762e-52 | -8.615850e-47 |
| Msa0522280 | Msa1142600 | 0.804832 | 1.787975e-49 | -8.615850e-47 |
| Msa0535570 | Msa1142600 | 0.825140 | 5.514070e-54 | -8.615850e-47 |
| Msa0538450 | Msa1142600 | 0.806796 | 6.912098e-50 | -8.615850e-47 |
| Msa0538520 | Msa1142600 | 0.810731 | 9.962334e-51 | -8.615850e-47 |
| Msa0538650 | Msa1142600 | 0.805277 | 1.442699e-49 | -8.615850e-47 |
| Msa0540640 | Msa1142600 | 0.804318 | 2.288605e-49 | -8.615850e-47 |
| Msa0549170 | Msa1142600 | 0.812417 | 4.284429e-51 | -8.615850e-47 |
| Msa0554660 | Msa1142600 | 0.807913 | 4.007046e-50 | -8.615850e-47 |
| Msa0561830 | Msa1142600 | 0.823555 | 1.300262e-53 | -8.615850e-47 |
| Msa0583390 | Msa1142600 | 0.800783 | 1.225571e-48 | -8.615850e-47 |
| Msa0584370 | Msa1142600 | 0.804827 | 1.791570e-49 | -8.615850e-47 |
| Msa0587730 | Msa1142600 | 0.808481 | 3.031906e-50 | -8.615850e-47 |
| Msa0591490 | Msa1142600 | 0.818011 | 2.448594e-52 | -8.615850e-47 |
| Msa0594320 | Msa1142600 | 0.825181 | 5.392911e-54 | -8.615850e-47 |
| Msa0850480 | Msa1142600 | 0.810453 | 1.143873e-50 | -8.615850e-47 |
| Msa0861730 | Msa1142600 | 0.810956 | 8.904715e-51 | -8.615850e-47 |
| Msa0863840 | Msa1142600 | 0.817031 | 4.071699e-52 | -8.615850e-47 |
| Msa0863850 | Msa1142600 | 0.805335 | 1.402784e-49 | -8.615850e-47 |
| Msa0868820 | Msa1142600 | 0.800481 | 1.412392e-48 | -8.615850e-47 |
| Msa0893840 | Msa1142600 | 0.814940 | 1.192390e-51 | -8.615850e-47 |
| Msa0896910 | Msa1142600 | 0.814168 | 1.767642e-51 | -8.615850e-47 |
| Msa0896920 | Msa1142600 | 0.814227 | 1.714862e-51 | -8.615850e-47 |
| Msa0932150 | Msa1142600 | 0.810685 | 1.019185e-50 | -8.615850e-47 |
| Msa0932930 | Msa1142600 | 0.816653 | 4.950250e-52 | -8.615850e-47 |
| Msa0936630 | Msa1142600 | 0.802792 | 4.740953e-49 | -8.615850e-47 |
| Msa0945320 | Msa1142600 | 0.806222 | 9.135511e-50 | -8.615850e-47 |
| Msa0970270 | Msa1142600 | 0.816641 | 4.980269e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1142600 | MtrunA17_Chr7g0223401 | 94.161 | 137 | 8 | 0 | 1 | 137 | 6 | 142 | 2.48e-91 | 261 |
| Msa1142600 | MtrunA17_Chr7g0223391 | 92.701 | 137 | 10 | 0 | 1 | 137 | 18 | 154 | 1.55e-90 | 259 |
| Msa1142600 | MtrunA17_Chr8g0356181 | 48.571 | 140 | 69 | 1 | 1 | 137 | 1 | 140 | 2.45e-41 | 134 |
| Msa1142600 | MtrunA17_Chr1g0190921 | 35.878 | 131 | 79 | 1 | 1 | 131 | 1 | 126 | 1.24e-19 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1142600 | AT2G44310.1 | 46.715 | 137 | 71 | 1 | 1 | 135 | 1 | 137 | 3.34e-39 | 129 |
Find 28 sgRNAs with CRISPR-Local
Find 32 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGATGAGTGTAGAAATTT+TGG | 0.159822 | 7_4:-17111523 | None:intergenic |
| CTTCTTCATCTTCAAGGAAA+TGG | 0.295262 | 7_4:+17111484 | None:intergenic |
| TAAACACGAGCAAGCTCGTT+TGG | 0.337682 | 7_4:+17111321 | None:intergenic |
| TAAATGCTTCTTCATCTTCA+AGG | 0.342383 | 7_4:+17111478 | None:intergenic |
| CTTGCAATGGCAGATGGGTT+GGG | 0.381320 | 7_4:-17111213 | Msa1142600:CDS |
| CATGCCAATTCAAATGGTCT+TGG | 0.391639 | 7_4:-17111187 | Msa1142600:CDS |
| TCTTCCAAGACCATTTGAAT+TGG | 0.395041 | 7_4:+17111183 | None:intergenic |
| TTAATAGCTTGGTAGGTAAT+CGG | 0.402120 | 7_4:-17111458 | Msa1142600:CDS |
| GGGTTTCATGCCAATTCAAA+TGG | 0.441784 | 7_4:-17111193 | Msa1142600:CDS |
| TGAAGAAGCATTTAATAGCT+TGG | 0.442582 | 7_4:-17111469 | Msa1142600:CDS |
| CTCCTTCAACATCTCTTCAT+AGG | 0.458078 | 7_4:+17111398 | None:intergenic |
| GCTTGCAATGGCAGATGGGT+TGG | 0.461788 | 7_4:-17111214 | Msa1142600:CDS |
| AAACACGAGCAAGCTCGTTT+GGG | 0.462526 | 7_4:+17111322 | None:intergenic |
| GAAGGAGCTCCGGAGCTTGA+GGG | 0.481338 | 7_4:-17111382 | Msa1142600:CDS |
| CAGTTCGATCACAACTTGAA+TGG | 0.485615 | 7_4:-17111282 | Msa1142600:CDS |
| CTCCTATGAAGAGATGTTGA+AGG | 0.486473 | 7_4:-17111400 | Msa1142600:CDS |
| GAAGCATTTAATAGCTTGGT+AGG | 0.494927 | 7_4:-17111465 | Msa1142600:CDS |
| TTTCGAAAACCCTCAAGCTC+CGG | 0.509695 | 7_4:+17111373 | None:intergenic |
| AACACACTTTGGTATTGATG+TGG | 0.520192 | 7_4:-17111352 | Msa1142600:CDS |
| TGAAGGAGCTCCGGAGCTTG+AGG | 0.522904 | 7_4:-17111383 | Msa1142600:CDS |
| AAGAGATGTTGAAGGAGCTC+CGG | 0.525969 | 7_4:-17111392 | Msa1142600:CDS |
| TGAAAGAGAGTACAATAAAG+TGG | 0.551009 | 7_4:-17111136 | Msa1142600:CDS |
| ATGATGCTTGCAATGGCAGA+TGG | 0.558625 | 7_4:-17111219 | Msa1142600:CDS |
| GACCGTCGTTGTTTGTGTCG+AGG | 0.574792 | 7_4:+17111427 | None:intergenic |
| TTCAAGGAAATGGAAAATTG+TGG | 0.612346 | 7_4:+17111494 | None:intergenic |
| TAAGCAGATGATGCTTGCAA+TGG | 0.622742 | 7_4:-17111226 | Msa1142600:CDS |
| TGATGCTTGCAATGGCAGAT+GGG | 0.629974 | 7_4:-17111218 | Msa1142600:CDS |
| CGCCTCGACACAAACAACGA+CGG | 0.676658 | 7_4:-17111429 | Msa1142600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATGAGTGTAGAAATTTTGGA+TGG | - | chr7_4:17111128-17111147 | Msa1142600:CDS | 30.0% |
| ! | TGAGTGTAGAAATTTTGGAT+GGG | - | chr7_4:17111129-17111148 | Msa1142600:CDS | 30.0% |
| TTCAAGGAAATGGAAAATTG+TGG | + | chr7_4:17111156-17111175 | None:intergenic | 30.0% | |
| TAAATGCTTCTTCATCTTCA+AGG | + | chr7_4:17111172-17111191 | None:intergenic | 30.0% | |
| !! | TGAAGAAGCATTTAATAGCT+TGG | - | chr7_4:17111178-17111197 | Msa1142600:CDS | 30.0% |
| TTAATAGCTTGGTAGGTAAT+CGG | - | chr7_4:17111189-17111208 | Msa1142600:CDS | 30.0% | |
| ! | TGAAAGAGAGTACAATAAAG+TGG | - | chr7_4:17111511-17111530 | Msa1142600:CDS | 30.0% |
| ! | GAGTGTAGAAATTTTGGATG+GGG | - | chr7_4:17111130-17111149 | Msa1142600:CDS | 35.0% |
| CTTCTTCATCTTCAAGGAAA+TGG | + | chr7_4:17111166-17111185 | None:intergenic | 35.0% | |
| ! | GAAGCATTTAATAGCTTGGT+AGG | - | chr7_4:17111182-17111201 | Msa1142600:CDS | 35.0% |
| !! | AACACACTTTGGTATTGATG+TGG | - | chr7_4:17111295-17111314 | Msa1142600:CDS | 35.0% |
| TCTTCCAAGACCATTTGAAT+TGG | + | chr7_4:17111467-17111486 | None:intergenic | 35.0% | |
| !! | CTCTTTCAACAGCTATTTTG+AGG | + | chr7_4:17111499-17111518 | None:intergenic | 35.0% |
| CTCCTATGAAGAGATGTTGA+AGG | - | chr7_4:17111247-17111266 | Msa1142600:CDS | 40.0% | |
| CTCCTTCAACATCTCTTCAT+AGG | + | chr7_4:17111252-17111271 | None:intergenic | 40.0% | |
| ! | AGGGTTTTCGAAACACACTT+TGG | - | chr7_4:17111284-17111303 | Msa1142600:CDS | 40.0% |
| CAGTTCGATCACAACTTGAA+TGG | - | chr7_4:17111365-17111384 | Msa1142600:CDS | 40.0% | |
| TAAGCAGATGATGCTTGCAA+TGG | - | chr7_4:17111421-17111440 | Msa1142600:CDS | 40.0% | |
| GGGTTTCATGCCAATTCAAA+TGG | - | chr7_4:17111454-17111473 | Msa1142600:CDS | 40.0% | |
| CATGCCAATTCAAATGGTCT+TGG | - | chr7_4:17111460-17111479 | Msa1142600:CDS | 40.0% | |
| AAGAGATGTTGAAGGAGCTC+CGG | - | chr7_4:17111255-17111274 | Msa1142600:CDS | 45.0% | |
| TTTCGAAAACCCTCAAGCTC+CGG | + | chr7_4:17111277-17111296 | None:intergenic | 45.0% | |
| AAACACGAGCAAGCTCGTTT+GGG | + | chr7_4:17111328-17111347 | None:intergenic | 45.0% | |
| TAAACACGAGCAAGCTCGTT+TGG | + | chr7_4:17111329-17111348 | None:intergenic | 45.0% | |
| ATGATGCTTGCAATGGCAGA+TGG | - | chr7_4:17111428-17111447 | Msa1142600:CDS | 45.0% | |
| TGATGCTTGCAATGGCAGAT+GGG | - | chr7_4:17111429-17111448 | Msa1142600:CDS | 45.0% | |
| ! | CTTGCAATGGCAGATGGGTT+GGG | - | chr7_4:17111434-17111453 | Msa1142600:CDS | 50.0% |
| CGCCTCGACACAAACAACGA+CGG | - | chr7_4:17111218-17111237 | Msa1142600:CDS | 55.0% | |
| GACCGTCGTTGTTTGTGTCG+AGG | + | chr7_4:17111223-17111242 | None:intergenic | 55.0% | |
| GCTTGCAATGGCAGATGGGT+TGG | - | chr7_4:17111433-17111452 | Msa1142600:CDS | 55.0% | |
| TGAAGGAGCTCCGGAGCTTG+AGG | - | chr7_4:17111264-17111283 | Msa1142600:CDS | 60.0% | |
| GAAGGAGCTCCGGAGCTTGA+GGG | - | chr7_4:17111265-17111284 | Msa1142600:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 17111128 | 17111541 | 17111128 | ID=Msa1142600;Name=Msa1142600 |
| chr7_4 | mRNA | 17111128 | 17111541 | 17111128 | ID=Msa1142600-mRNA-1;Parent=Msa1142600;Name=Msa1142600-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|-1|0|1|-1|1|1|0|137 |
| chr7_4 | exon | 17111128 | 17111541 | 17111128 | ID=Msa1142600-mRNA-1:exon:3837;Parent=Msa1142600-mRNA-1 |
| chr7_4 | CDS | 17111128 | 17111541 | 17111128 | ID=Msa1142600-mRNA-1:cds;Parent=Msa1142600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
