AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1440260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440260 MtrunA17_Chr1g0209811 95.092 163 5 1 1 163 1 160 3.03e-106 300
Msa1440260 MtrunA17_Chr6g0457561 46.584 161 66 6 4 163 27 168 8.29e-35 119
Msa1440260 MtrunA17_Chr8g0391011 46.012 163 67 8 7 163 13 160 5.04e-29 104
Msa1440260 MtrunA17_Chr6g0484481 45.122 164 68 7 5 163 21 167 1.28e-25 96.3
Msa1440260 MtrunA17_Chr1g0171841 38.931 131 60 4 26 149 31 148 4.39e-13 63.2
Msa1440260 MtrunA17_Chr4g0045631 38.732 142 58 5 9 149 22 135 1.47e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440260 AT1G68490.1 59.756 164 53 6 4 163 29 183 4.03e-49 157
Msa1440260 AT1G13390.1 52.469 162 65 5 4 163 25 176 4.89e-42 138
Msa1440260 AT1G13390.2 52.469 162 65 5 4 163 25 176 4.89e-42 138
Msa1440260 AT5G16110.1 50.909 165 67 7 4 163 89 244 1.94e-35 124
Msa1440260 AT3G02555.2 46.296 162 56 5 5 163 29 162 2.16e-27 100
Msa1440260 AT3G02555.1 46.296 162 56 5 5 163 29 162 2.16e-27 100

Find 109 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCGGATTGTTACCAAAAT+TGG 0.118190 tig0029039:+48215 None:intergenic
TTGCAGATTGAGGGTTAATT+TGG 0.190437 tig0029039:-47870 Msa1440260:three_prime_UTR
GGATGTGTTCGGGCCAATTT+TGG 0.234336 tig0029039:-48228 Msa1440260:CDS
AGCTACGGGATAAGGAATTT+TGG 0.240607 tig0029039:-48043 Msa1440260:three_prime_UTR
AGACACTAGTACAAGAAATA+AGG 0.256941 tig0029039:+47836 None:intergenic
TGTAAGTAGAAGAGTCATTA+GGG 0.322886 tig0029039:-47786 Msa1440260:three_prime_UTR
TTGTAACTACCGGCTTAAAA+AGG 0.335635 tig0029039:-47713 Msa1440260:three_prime_UTR
AGTCCGACACGGCGGGGCTT+AGG 0.339729 tig0029039:+48942 None:intergenic
AGTAGCTAACCCACTAATTC+AGG 0.341828 tig0029039:-48361 Msa1440260:CDS
GTCAATAGTGTCTCTTGTTT+AGG 0.345549 tig0029039:-47925 Msa1440260:three_prime_UTR
TTGTAAGTAGAAGAGTCATT+AGG 0.348876 tig0029039:-47787 Msa1440260:three_prime_UTR
CTTATCCCGTAGCTCTTATA+TGG 0.352258 tig0029039:+48052 None:intergenic
TAATTCAGGATGCTCGATTC+GGG 0.363565 tig0029039:-48347 Msa1440260:CDS
CCTCCCTTCCTTGCAGAAGA+TGG 0.393816 tig0029039:+48249 None:intergenic
CTAATTCAGGATGCTCGATT+CGG 0.401608 tig0029039:-48348 Msa1440260:CDS
CATATAAGAGCTACGGGATA+AGG 0.402512 tig0029039:-48051 Msa1440260:three_prime_UTR
AGAAGGTGGCAGACCGGATG+GGG 0.404001 tig0029039:+48275 None:intergenic
GTGACTAAATAATGCGGTTA+AGG 0.406349 tig0029039:-47893 Msa1440260:three_prime_UTR
GAGCAGGGATGCTGCAATTA+CGG 0.410027 tig0029039:+48154 None:intergenic
CGCCCCTCTCACCGTCGTCA+TGG 0.419708 tig0029039:-48311 Msa1440260:CDS
GTCCGACACGGCGGGGCTTA+GGG 0.420772 tig0029039:+48943 None:intergenic
TGCAGATTGAGGGTTAATTT+GGG 0.421481 tig0029039:-47869 Msa1440260:three_prime_UTR
CAAGGAAGGGAGGATGTGTT+CGG 0.421741 tig0029039:-48239 Msa1440260:CDS
GATCCTTCCGGTGGCATCTC+AGG 0.425952 tig0029039:-48887 Msa1440260:intron
GACACTAGTACAAGAAATAA+GGG 0.430863 tig0029039:+47837 None:intergenic
CTCCCTTCCTTGCAGAAGAT+GGG 0.432493 tig0029039:+48250 None:intergenic
TAGTTACAATTACAATTCAT+AGG 0.433568 tig0029039:+47727 None:intergenic
GGTGGAACTGCAAGCAAGCT+TGG 0.435280 tig0029039:+49718 None:intergenic
AAGGATTCGATTGCCTTGAC+AGG 0.436802 tig0029039:-48182 Msa1440260:CDS
CGGTTAAGGTTGCAGATTGA+GGG 0.439951 tig0029039:-47879 Msa1440260:three_prime_UTR
TAATTGCAGCATCCCTGCTC+TGG 0.448656 tig0029039:-48151 Msa1440260:CDS
GCCCCTCTCACCGTCGTCAT+GGG 0.457309 tig0029039:-48310 Msa1440260:CDS
GGAGAAGGTGGCAGACCGGA+TGG 0.458776 tig0029039:+48273 None:intergenic
GTGGAACTGCAAGCAAGCTT+GGG 0.463428 tig0029039:+49719 None:intergenic
CTCATCTGCGTCAAATCCCT+TGG 0.463633 tig0029039:-48739 Msa1440260:CDS
GGTGGCAGACCGGATGGGGC+AGG 0.466438 tig0029039:+48279 None:intergenic
TGCCCTAAGCCCCGCCGTGT+CGG 0.473384 tig0029039:-48945 Msa1440260:CDS
CTGTTGTTCTAAGCCAGAGC+AGG 0.481278 tig0029039:+48138 None:intergenic
TAGAAGAAATGAAGAGGTGC+AGG 0.484324 tig0029039:+49697 None:intergenic
GAGAAGGTGGCAGACCGGAT+GGG 0.484866 tig0029039:+48274 None:intergenic
ATTGAAAGAAGAAAGTAAAG+AGG 0.489519 tig0029039:+49660 None:intergenic
ACTACCCGAGCAGATCCTTC+CGG 0.494170 tig0029039:-48899 Msa1440260:CDS
GTGGTGGTTCCTGCCCCATC+CGG 0.495940 tig0029039:-48288 Msa1440260:CDS
TTGAATCACACGGTTCAACT+TGG 0.496164 tig0029039:+48763 None:intergenic
GTTGAGGAGTCCGACACGGC+GGG 0.496709 tig0029039:+48935 None:intergenic
GTAGAAGAGTCATTAGGGGA+TGG 0.509141 tig0029039:-47781 Msa1440260:three_prime_UTR
GCGGTTAAGGTTGCAGATTG+AGG 0.511423 tig0029039:-47880 Msa1440260:three_prime_UTR
CTCACCGTCGTCATGGGTGG+TGG 0.513742 tig0029039:-48304 Msa1440260:CDS
TCTGCTCGGGTAGTCGTTGA+CGG 0.526759 tig0029039:+48908 None:intergenic
TGAATTGTAATTGTAACTAC+CGG 0.527904 tig0029039:-47723 Msa1440260:three_prime_UTR
AATAGAATGGGTTAATATCG+TGG 0.530353 tig0029039:-49897 None:intergenic
GAATTTACTGTACAAAGCTA+TGG 0.531959 tig0029039:+49615 None:intergenic
CCACCCATGACGACGGTGAG+AGG 0.533000 tig0029039:+48307 None:intergenic
CAAAGTTACAAACAAGAGGA+TGG 0.534199 tig0029039:+47807 None:intergenic
AATCCGGCGGTGAGAGTCGA+AGG 0.545936 tig0029039:-48201 Msa1440260:CDS
TCCCTTCCTTGCAGAAGATG+GGG 0.546203 tig0029039:+48251 None:intergenic
AATCGAGCATCCTGAATTAG+TGG 0.550154 tig0029039:+48351 None:intergenic
CAACCACCATATAAGAGCTA+CGG 0.552833 tig0029039:-48058 Msa1440260:three_prime_UTR
AGTCGTTGACGGCGAAGTTG+AGG 0.554697 tig0029039:+48919 None:intergenic
AACCACCATATAAGAGCTAC+GGG 0.555576 tig0029039:-48057 Msa1440260:three_prime_UTR
TAATGTATGGTTAATTCATG+CGG 0.557043 tig0029039:+49836 None:intergenic
CACCCATGACGACGGTGAGA+GGG 0.562391 tig0029039:+48308 None:intergenic
TTGGATGTCCTAGTTTGAAG+AGG 0.567788 tig0029039:-48024 Msa1440260:three_prime_UTR
AAGGAAGGGAGGATGTGTTC+GGG 0.568345 tig0029039:-48238 Msa1440260:CDS
AGAAAAGAAAATTTCGACGA+AGG 0.572219 tig0029039:-48995 Msa1440260:five_prime_UTR
GCCACCGGAAGGATCTGCTC+GGG 0.575084 tig0029039:+48895 None:intergenic
AAATATAAAGCAACGAGTGT+GGG 0.578717 tig0029039:-49751 Msa1440260:five_prime_UTR
TTGGTGAGAATTGTGTCCAA+GGG 0.586012 tig0029039:+48723 None:intergenic
CTTACAAAGTTACAAACAAG+AGG 0.586457 tig0029039:+47803 None:intergenic
CCTCTCACCGTCGTCATGGG+TGG 0.588491 tig0029039:-48307 Msa1440260:CDS
ATCCCGTAGCTCTTATATGG+TGG 0.589075 tig0029039:+48055 None:intergenic
TAAATATAAAGCAACGAGTG+TGG 0.589709 tig0029039:-49752 Msa1440260:five_prime_UTR
CTTGGTGAGAATTGTGTCCA+AGG 0.590478 tig0029039:+48722 None:intergenic
GCAGGATGATGATTGTGATA+CGG 0.592153 tig0029039:-48448 Msa1440260:intron
AATGTATGGTTAATTCATGC+GGG 0.595664 tig0029039:+49837 None:intergenic
AGTGGGTTAGCTACTCTGCT+CGG 0.596257 tig0029039:+48369 None:intergenic
TGCCACCGGAAGGATCTGCT+CGG 0.596625 tig0029039:+48894 None:intergenic
AGGATTCGATTGCCTTGACA+GGG 0.597575 tig0029039:-48181 Msa1440260:CDS
ATAGAATGGGTTAATATCGT+GGG 0.604680 tig0029039:-49896 None:intergenic
CCATCTTCTGCAAGGAAGGG+AGG 0.605126 tig0029039:-48249 Msa1440260:CDS
CCCTTCCTTGCAGAAGATGG+GGG 0.610451 tig0029039:+48252 None:intergenic
ACCCATGACGACGGTGAGAG+GGG 0.613698 tig0029039:+48309 None:intergenic
AATCCTTCGACTCTCACCGC+CGG 0.616188 tig0029039:+48198 None:intergenic
CAGTAAATTCATTCAACACA+AGG 0.616519 tig0029039:-49602 Msa1440260:intron
TTTCGACGAAGGAAGATGAA+CGG 0.620932 tig0029039:-48984 Msa1440260:exon
AATTACGGCTGTCCCTGTCA+AGG 0.629306 tig0029039:+48169 None:intergenic
ATCGAGCATCCTGAATTAGT+GGG 0.630666 tig0029039:+48352 None:intergenic
GGCGGCGACGAGGCTACTGG+AGG 0.632101 tig0029039:+48414 None:intergenic
AAATTCACCTGAGATGCCAC+CGG 0.634810 tig0029039:+48880 None:intergenic
AAGAAATGAAGAGGTGCAGG+TGG 0.635822 tig0029039:+49700 None:intergenic
TCACCTGAGATGCCACCGGA+AGG 0.642394 tig0029039:+48884 None:intergenic
CGAAGTTGAGGAGTCCGACA+CGG 0.647237 tig0029039:+48931 None:intergenic
GGAACCACCACCCATGACGA+CGG 0.659927 tig0029039:+48300 None:intergenic
GCAGATGAGTTTGAATCACA+CGG 0.662013 tig0029039:+48753 None:intergenic
TGTTGTTCTAAGCCAGAGCA+GGG 0.670625 tig0029039:+48139 None:intergenic
ATGATGTGATATTACGCGGG+AGG 0.672546 tig0029039:-49865 Msa1440260:five_prime_UTR
ACCCGAGCAGATCCTTCCGG+TGG 0.672658 tig0029039:-48896 Msa1440260:CDS
AATTCAGGATGCTCGATTCG+GGG 0.678593 tig0029039:-48346 Msa1440260:CDS
TATATAGTGACTAAATAATG+CGG 0.682777 tig0029039:-47899 Msa1440260:three_prime_UTR
AGTTGAGGAGTCCGACACGG+CGG 0.682882 tig0029039:+48934 None:intergenic
TTGAGGAGTCCGACACGGCG+GGG 0.686362 tig0029039:+48936 None:intergenic
GCGGGGCTTAGGGCAAACGA+CGG 0.692402 tig0029039:+48953 None:intergenic
AAAATGATGTGATATTACGC+GGG 0.699449 tig0029039:-49868 Msa1440260:five_prime_UTR
GTAAGTAGAAGAGTCATTAG+GGG 0.703281 tig0029039:-47785 Msa1440260:three_prime_UTR
CTTGGACACAATTCTCACCA+AGG 0.706031 tig0029039:-48721 Msa1440260:intron
GTATGGTTAATTCATGCGGG+CGG 0.716668 tig0029039:+49840 None:intergenic
TGGTTGTAGAAGAAATGAAG+AGG 0.719069 tig0029039:+49691 None:intergenic
GGGTTAGCTACTCTGCTCGG+CGG 0.725325 tig0029039:+48372 None:intergenic
AAAGTAAAGAGGATGTTGTG+TGG 0.752917 tig0029039:+49671 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAGTTTTGTTTTAATTTTA+TGG - tig0029039:48189-48208 Msa1440260:CDS 10.0%
!! AAATTCATATAAAATAATAG+AGG + tig0029039:48846-48865 None:intergenic 10.0%
!!! CTATTATTTTATATGAATTT+AGG - tig0029039:48846-48865 Msa1440260:intron 10.0%
!!! CTATTATTTTATATGAATTT+AGG - tig0029039:48846-48865 Msa1440260:intron 10.0%
!!! ATAGTTTTGTTTTAATTTTA+TGG - tig0029039:48189-48208 Msa1440260:CDS 10.0%
!! AAATTCATATAAAATAATAG+AGG + tig0029039:48846-48865 None:intergenic 10.0%
!!! CTATTATTTTATATGAATTT+AGG - tig0029039:48846-48865 Msa1440260:intron 10.0%
!!! CTATTATTTTATATGAATTT+AGG - tig0029039:48846-48865 Msa1440260:intron 10.0%
!!! AAGATATTTTTAGTAATGTA+TGG + tig0029039:47712-47731 None:intergenic 15.0%
!! TAGAAATAGAAATAGAATAA+AGG + tig0029039:48008-48027 None:intergenic 15.0%
!! AAAATTTCATCATGAAAAAA+CGG + tig0029039:48122-48141 None:intergenic 15.0%
!!! TGTTTTATTTGTTAGTTTAA+CGG - tig0029039:48165-48184 Msa1440260:CDS 15.0%
!!! AACGTGTTTATAATTTATTT+TGG - tig0029039:48304-48323 Msa1440260:CDS 15.0%
!!! ATATGAATTTAGGTTAAAAT+TGG - tig0029039:48856-48875 Msa1440260:intron 15.0%
!!! AATTGATCTATTTTTAACAT+TGG - tig0029039:48924-48943 Msa1440260:CDS 15.0%
!!! TTCATTTTGATTTTCTTTTA+TGG - tig0029039:49780-49799 Msa1440260:five_prime_UTR 15.0%
!!! TCATTTTGATTTTCTTTTAT+GGG - tig0029039:49781-49800 Msa1440260:five_prime_UTR 15.0%
!!! AAGATATTTTTAGTAATGTA+TGG + tig0029039:47712-47731 None:intergenic 15.0%
!! TAGAAATAGAAATAGAATAA+AGG + tig0029039:48008-48027 None:intergenic 15.0%
!! AAAATTTCATCATGAAAAAA+CGG + tig0029039:48122-48141 None:intergenic 15.0%
!!! TGTTTTATTTGTTAGTTTAA+CGG - tig0029039:48165-48184 Msa1440260:CDS 15.0%
!!! AACGTGTTTATAATTTATTT+TGG - tig0029039:48304-48323 Msa1440260:CDS 15.0%
!!! ATATGAATTTAGGTTAAAAT+TGG - tig0029039:48856-48875 Msa1440260:intron 15.0%
!!! AATTGATCTATTTTTAACAT+TGG - tig0029039:48924-48943 Msa1440260:CDS 15.0%
!!! TTCATTTTGATTTTCTTTTA+TGG - tig0029039:49780-49799 Msa1440260:five_prime_UTR 15.0%
!!! TCATTTTGATTTTCTTTTAT+GGG - tig0029039:49781-49800 Msa1440260:five_prime_UTR 15.0%
!! TAGAAATAGAATAAAGGAAA+CGG + tig0029039:48002-48021 None:intergenic 20.0%
!! TTGAATATATGTGGAAAAAA+TGG + tig0029039:48054-48073 None:intergenic 20.0%
!! AGATTAAAGTTGAATATATG+TGG + tig0029039:48063-48082 None:intergenic 20.0%
!! CGAAAAAACAATAACAATTA+AGG - tig0029039:48247-48266 Msa1440260:CDS 20.0%
!!! TTTTCTCTTTTAATTTGCTT+TGG - tig0029039:48696-48715 Msa1440260:intron 20.0%
!! TATATAGTGACTAAATAATG+CGG - tig0029039:49633-49652 Msa1440260:five_prime_UTR 20.0%
!! TAGTTACAATTACAATTCAT+AGG + tig0029039:49808-49827 None:intergenic 20.0%
!! TAGAAATAGAATAAAGGAAA+CGG + tig0029039:48002-48021 None:intergenic 20.0%
!! TTGAATATATGTGGAAAAAA+TGG + tig0029039:48054-48073 None:intergenic 20.0%
!! AGATTAAAGTTGAATATATG+TGG + tig0029039:48063-48082 None:intergenic 20.0%
!! CGAAAAAACAATAACAATTA+AGG - tig0029039:48247-48266 Msa1440260:CDS 20.0%
!!! TTTTCTCTTTTAATTTGCTT+TGG - tig0029039:48696-48715 Msa1440260:intron 20.0%
!! TATATAGTGACTAAATAATG+CGG - tig0029039:49633-49652 Msa1440260:five_prime_UTR 20.0%
!! TAGTTACAATTACAATTCAT+AGG + tig0029039:49808-49827 None:intergenic 20.0%
! AAAAATGATGTGATATTACG+CGG - tig0029039:47663-47682 Msa1440260:three_prime_UTR 25.0%
! TAATGTATGGTTAATTCATG+CGG + tig0029039:47699-47718 None:intergenic 25.0%
! ATTGAAAGAAGAAAGTAAAG+AGG + tig0029039:47875-47894 None:intergenic 25.0%
!!! ATATATCTCGTTCTGAATTT+TGG - tig0029039:48475-48494 Msa1440260:intron 25.0%
! AATAGAGGAATTATTTACCT+TGG + tig0029039:48831-48850 None:intergenic 25.0%
! TGAATTGTAATTGTAACTAC+CGG - tig0029039:49809-49828 Msa1440260:five_prime_UTR 25.0%
!!! ACAAATTTTCCTTTTTAAGC+CGG + tig0029039:49831-49850 None:intergenic 25.0%
! AAAAATGATGTGATATTACG+CGG - tig0029039:47663-47682 Msa1440260:three_prime_UTR 25.0%
! TAATGTATGGTTAATTCATG+CGG + tig0029039:47699-47718 None:intergenic 25.0%
! ATTGAAAGAAGAAAGTAAAG+AGG + tig0029039:47875-47894 None:intergenic 25.0%
!!! ATATATCTCGTTCTGAATTT+TGG - tig0029039:48475-48494 Msa1440260:intron 25.0%
! AATAGAGGAATTATTTACCT+TGG + tig0029039:48831-48850 None:intergenic 25.0%
! TGAATTGTAATTGTAACTAC+CGG - tig0029039:49809-49828 Msa1440260:five_prime_UTR 25.0%
!!! ACAAATTTTCCTTTTTAAGC+CGG + tig0029039:49831-49850 None:intergenic 25.0%
AAAATGATGTGATATTACGC+GGG - tig0029039:47664-47683 Msa1440260:three_prime_UTR 30.0%
AATGTATGGTTAATTCATGC+GGG + tig0029039:47698-47717 None:intergenic 30.0%
TAAATATAAAGCAACGAGTG+TGG - tig0029039:47780-47799 Msa1440260:three_prime_UTR 30.0%
AAATATAAAGCAACGAGTGT+GGG - tig0029039:47781-47800 Msa1440260:three_prime_UTR 30.0%
GAATTTACTGTACAAAGCTA+TGG + tig0029039:47920-47939 None:intergenic 30.0%
CAGTAAATTCATTCAACACA+AGG - tig0029039:47930-47949 Msa1440260:three_prime_UTR 30.0%
AGAAAAGAAAATTTCGACGA+AGG - tig0029039:48537-48556 Msa1440260:intron 30.0%
ACACAAAGCAATTCAACAAA+AGG + tig0029039:49020-49039 None:intergenic 30.0%
GACACTAGTACAAGAAATAA+GGG + tig0029039:49698-49717 None:intergenic 30.0%
AGACACTAGTACAAGAAATA+AGG + tig0029039:49699-49718 None:intergenic 30.0%
CTTACAAAGTTACAAACAAG+AGG + tig0029039:49732-49751 None:intergenic 30.0%
TTGTAAGTAGAAGAGTCATT+AGG - tig0029039:49745-49764 Msa1440260:five_prime_UTR 30.0%
TGTAAGTAGAAGAGTCATTA+GGG - tig0029039:49746-49765 Msa1440260:five_prime_UTR 30.0%
TATTTAGCAACTTGAATGAC+AGG - tig0029039:49890-49909 Msa1440260:five_prime_UTR 30.0%
AAAATGATGTGATATTACGC+GGG - tig0029039:47664-47683 Msa1440260:three_prime_UTR 30.0%
AATGTATGGTTAATTCATGC+GGG + tig0029039:47698-47717 None:intergenic 30.0%
TAAATATAAAGCAACGAGTG+TGG - tig0029039:47780-47799 Msa1440260:three_prime_UTR 30.0%
AAATATAAAGCAACGAGTGT+GGG - tig0029039:47781-47800 Msa1440260:three_prime_UTR 30.0%
GAATTTACTGTACAAAGCTA+TGG + tig0029039:47920-47939 None:intergenic 30.0%
CAGTAAATTCATTCAACACA+AGG - tig0029039:47930-47949 Msa1440260:three_prime_UTR 30.0%
AGAAAAGAAAATTTCGACGA+AGG - tig0029039:48537-48556 Msa1440260:intron 30.0%
ACACAAAGCAATTCAACAAA+AGG + tig0029039:49020-49039 None:intergenic 30.0%
GACACTAGTACAAGAAATAA+GGG + tig0029039:49698-49717 None:intergenic 30.0%
AGACACTAGTACAAGAAATA+AGG + tig0029039:49699-49718 None:intergenic 30.0%
CTTACAAAGTTACAAACAAG+AGG + tig0029039:49732-49751 None:intergenic 30.0%
TTGTAAGTAGAAGAGTCATT+AGG - tig0029039:49745-49764 Msa1440260:five_prime_UTR 30.0%
TGTAAGTAGAAGAGTCATTA+GGG - tig0029039:49746-49765 Msa1440260:five_prime_UTR 30.0%
TGGTTGTAGAAGAAATGAAG+AGG + tig0029039:47844-47863 None:intergenic 35.0%
AAAGTAAAGAGGATGTTGTG+TGG + tig0029039:47864-47883 None:intergenic 35.0%
TTAAGGTGATTAGAGCTAAG+CGG - tig0029039:48264-48283 Msa1440260:CDS 35.0%
GGAAAAATTGTAACAGCTCA+AGG + tig0029039:48357-48376 None:intergenic 35.0%
AGAAACGTTCATTTCATGGA+CGG + tig0029039:48378-48397 None:intergenic 35.0%
GATGAGAAACGTTCATTTCA+TGG + tig0029039:48382-48401 None:intergenic 35.0%
! ACTCTTTTCCTCTTCAAACT+AGG + tig0029039:49519-49538 None:intergenic 35.0%
! GTCAATAGTGTCTCTTGTTT+AGG - tig0029039:49607-49626 Msa1440260:five_prime_UTR 35.0%
GTGACTAAATAATGCGGTTA+AGG - tig0029039:49639-49658 Msa1440260:five_prime_UTR 35.0%
TTGCAGATTGAGGGTTAATT+TGG - tig0029039:49662-49681 Msa1440260:five_prime_UTR 35.0%
TGCAGATTGAGGGTTAATTT+GGG - tig0029039:49663-49682 Msa1440260:five_prime_UTR 35.0%
CAAAGTTACAAACAAGAGGA+TGG + tig0029039:49728-49747 None:intergenic 35.0%
GTAAGTAGAAGAGTCATTAG+GGG - tig0029039:49747-49766 Msa1440260:five_prime_UTR 35.0%
!! TTGTAACTACCGGCTTAAAA+AGG - tig0029039:49819-49838 Msa1440260:five_prime_UTR 35.0%
TGGTTGTAGAAGAAATGAAG+AGG + tig0029039:47844-47863 None:intergenic 35.0%
AAAGTAAAGAGGATGTTGTG+TGG + tig0029039:47864-47883 None:intergenic 35.0%
TTAAGGTGATTAGAGCTAAG+CGG - tig0029039:48264-48283 Msa1440260:CDS 35.0%
GGAAAAATTGTAACAGCTCA+AGG + tig0029039:48357-48376 None:intergenic 35.0%
AGAAACGTTCATTTCATGGA+CGG + tig0029039:48378-48397 None:intergenic 35.0%
GATGAGAAACGTTCATTTCA+TGG + tig0029039:48382-48401 None:intergenic 35.0%
! ACTCTTTTCCTCTTCAAACT+AGG + tig0029039:49519-49538 None:intergenic 35.0%
! GTCAATAGTGTCTCTTGTTT+AGG - tig0029039:49607-49626 Msa1440260:five_prime_UTR 35.0%
GTGACTAAATAATGCGGTTA+AGG - tig0029039:49639-49658 Msa1440260:five_prime_UTR 35.0%
TTGCAGATTGAGGGTTAATT+TGG - tig0029039:49662-49681 Msa1440260:five_prime_UTR 35.0%
TGCAGATTGAGGGTTAATTT+GGG - tig0029039:49663-49682 Msa1440260:five_prime_UTR 35.0%
CAAAGTTACAAACAAGAGGA+TGG + tig0029039:49728-49747 None:intergenic 35.0%
GTAAGTAGAAGAGTCATTAG+GGG - tig0029039:49747-49766 Msa1440260:five_prime_UTR 35.0%
!! TTGTAACTACCGGCTTAAAA+AGG - tig0029039:49819-49838 Msa1440260:five_prime_UTR 35.0%
! TAGAAGAAATGAAGAGGTGC+AGG + tig0029039:47838-47857 None:intergenic 40.0%
AACAGCTCAAGGTTAAGATC+TGG + tig0029039:48346-48365 None:intergenic 40.0%
TTTCGACGAAGGAAGATGAA+CGG - tig0029039:48548-48567 Msa1440260:intron 40.0%
TTGAATCACACGGTTCAACT+TGG + tig0029039:48772-48791 None:intergenic 40.0%
GCAGATGAGTTTGAATCACA+CGG + tig0029039:48782-48801 None:intergenic 40.0%
TTGGTGAGAATTGTGTCCAA+GGG + tig0029039:48812-48831 None:intergenic 40.0%
!! GTTGTGCTTTTGTGATTTGC+AGG - tig0029039:49066-49085 Msa1440260:intron 40.0%
GCAGGATGATGATTGTGATA+CGG - tig0029039:49084-49103 Msa1440260:intron 40.0%
AGTAGCTAACCCACTAATTC+AGG - tig0029039:49171-49190 Msa1440260:intron 40.0%
ATCGAGCATCCTGAATTAGT+GGG + tig0029039:49183-49202 None:intergenic 40.0%
AATCGAGCATCCTGAATTAG+TGG + tig0029039:49184-49203 None:intergenic 40.0%
CTAATTCAGGATGCTCGATT+CGG - tig0029039:49184-49203 Msa1440260:intron 40.0%
TAATTCAGGATGCTCGATTC+GGG - tig0029039:49185-49204 Msa1440260:intron 40.0%
!! GGCCAATTTTGGTAACAATC+CGG - tig0029039:49315-49334 Msa1440260:intron 40.0%
!! CAATTTTGGTAACAATCCGG+CGG - tig0029039:49318-49337 Msa1440260:intron 40.0%
CAACCACCATATAAGAGCTA+CGG - tig0029039:49474-49493 Msa1440260:intron 40.0%
AACCACCATATAAGAGCTAC+GGG - tig0029039:49475-49494 Msa1440260:intron 40.0%
CTTATCCCGTAGCTCTTATA+TGG + tig0029039:49483-49502 None:intergenic 40.0%
CATATAAGAGCTACGGGATA+AGG - tig0029039:49481-49500 Msa1440260:intron 40.0%
! AGCTACGGGATAAGGAATTT+TGG - tig0029039:49489-49508 Msa1440260:intron 40.0%
TTGGATGTCCTAGTTTGAAG+AGG - tig0029039:49508-49527 Msa1440260:intron 40.0%
! TAGAAGAAATGAAGAGGTGC+AGG + tig0029039:47838-47857 None:intergenic 40.0%
AACAGCTCAAGGTTAAGATC+TGG + tig0029039:48346-48365 None:intergenic 40.0%
TTTCGACGAAGGAAGATGAA+CGG - tig0029039:48548-48567 Msa1440260:intron 40.0%
TTGAATCACACGGTTCAACT+TGG + tig0029039:48772-48791 None:intergenic 40.0%
GCAGATGAGTTTGAATCACA+CGG + tig0029039:48782-48801 None:intergenic 40.0%
TTGGTGAGAATTGTGTCCAA+GGG + tig0029039:48812-48831 None:intergenic 40.0%
!! GTTGTGCTTTTGTGATTTGC+AGG - tig0029039:49066-49085 Msa1440260:intron 40.0%
GCAGGATGATGATTGTGATA+CGG - tig0029039:49084-49103 Msa1440260:intron 40.0%
AGTAGCTAACCCACTAATTC+AGG - tig0029039:49171-49190 Msa1440260:intron 40.0%
ATCGAGCATCCTGAATTAGT+GGG + tig0029039:49183-49202 None:intergenic 40.0%
AATCGAGCATCCTGAATTAG+TGG + tig0029039:49184-49203 None:intergenic 40.0%
CTAATTCAGGATGCTCGATT+CGG - tig0029039:49184-49203 Msa1440260:intron 40.0%
TAATTCAGGATGCTCGATTC+GGG - tig0029039:49185-49204 Msa1440260:intron 40.0%
!! GGCCAATTTTGGTAACAATC+CGG - tig0029039:49315-49334 Msa1440260:intron 40.0%
!! CAATTTTGGTAACAATCCGG+CGG - tig0029039:49318-49337 Msa1440260:intron 40.0%
CAACCACCATATAAGAGCTA+CGG - tig0029039:49474-49493 Msa1440260:intron 40.0%
AACCACCATATAAGAGCTAC+GGG - tig0029039:49475-49494 Msa1440260:intron 40.0%
CTTATCCCGTAGCTCTTATA+TGG + tig0029039:49483-49502 None:intergenic 40.0%
CATATAAGAGCTACGGGATA+AGG - tig0029039:49481-49500 Msa1440260:intron 40.0%
! AGCTACGGGATAAGGAATTT+TGG - tig0029039:49489-49508 Msa1440260:intron 40.0%
TTGGATGTCCTAGTTTGAAG+AGG - tig0029039:49508-49527 Msa1440260:intron 40.0%
ATGATGTGATATTACGCGGG+AGG - tig0029039:47667-47686 Msa1440260:three_prime_UTR 45.0%
GTATGGTTAATTCATGCGGG+CGG + tig0029039:47695-47714 None:intergenic 45.0%
! AAGAAATGAAGAGGTGCAGG+TGG + tig0029039:47835-47854 None:intergenic 45.0%
AAATTCACCTGAGATGCCAC+CGG + tig0029039:48655-48674 None:intergenic 45.0%
CTTGGTGAGAATTGTGTCCA+AGG + tig0029039:48813-48832 None:intergenic 45.0%
CTTGGACACAATTCTCACCA+AGG - tig0029039:48811-48830 Msa1440260:intron 45.0%
! AATTCAGGATGCTCGATTCG+GGG - tig0029039:49186-49205 Msa1440260:intron 45.0%
CGCCGGATTGTTACCAAAAT+TGG + tig0029039:49320-49339 None:intergenic 45.0%
AAGGATTCGATTGCCTTGAC+AGG - tig0029039:49350-49369 Msa1440260:intron 45.0%
AGGATTCGATTGCCTTGACA+GGG - tig0029039:49351-49370 Msa1440260:intron 45.0%
! TGTTGTTCTAAGCCAGAGCA+GGG + tig0029039:49396-49415 None:intergenic 45.0%
ATCCCGTAGCTCTTATATGG+TGG + tig0029039:49480-49499 None:intergenic 45.0%
CGGTTAAGGTTGCAGATTGA+GGG - tig0029039:49653-49672 Msa1440260:five_prime_UTR 45.0%
GTAGAAGAGTCATTAGGGGA+TGG - tig0029039:49751-49770 Msa1440260:five_prime_UTR 45.0%
ATGATGTGATATTACGCGGG+AGG - tig0029039:47667-47686 Msa1440260:three_prime_UTR 45.0%
GTATGGTTAATTCATGCGGG+CGG + tig0029039:47695-47714 None:intergenic 45.0%
! AAGAAATGAAGAGGTGCAGG+TGG + tig0029039:47835-47854 None:intergenic 45.0%
AAATTCACCTGAGATGCCAC+CGG + tig0029039:48655-48674 None:intergenic 45.0%
CTTGGTGAGAATTGTGTCCA+AGG + tig0029039:48813-48832 None:intergenic 45.0%
CTTGGACACAATTCTCACCA+AGG - tig0029039:48811-48830 Msa1440260:intron 45.0%
! AATTCAGGATGCTCGATTCG+GGG - tig0029039:49186-49205 Msa1440260:intron 45.0%
CGCCGGATTGTTACCAAAAT+TGG + tig0029039:49320-49339 None:intergenic 45.0%
AAGGATTCGATTGCCTTGAC+AGG - tig0029039:49350-49369 Msa1440260:intron 45.0%
AGGATTCGATTGCCTTGACA+GGG - tig0029039:49351-49370 Msa1440260:intron 45.0%
! TGTTGTTCTAAGCCAGAGCA+GGG + tig0029039:49396-49415 None:intergenic 45.0%
ATCCCGTAGCTCTTATATGG+TGG + tig0029039:49480-49499 None:intergenic 45.0%
CGGTTAAGGTTGCAGATTGA+GGG - tig0029039:49653-49672 Msa1440260:five_prime_UTR 45.0%
GTAGAAGAGTCATTAGGGGA+TGG - tig0029039:49751-49770 Msa1440260:five_prime_UTR 45.0%
GTGGAACTGCAAGCAAGCTT+GGG + tig0029039:47816-47835 None:intergenic 50.0%
CTCATCTGCGTCAAATCCCT+TGG - tig0029039:48793-48812 Msa1440260:intron 50.0%
GGAGACCCACAGAAAAATGG+GGG + tig0029039:49142-49161 None:intergenic 50.0%
CGGAGACCCACAGAAAAATG+GGG + tig0029039:49143-49162 None:intergenic 50.0%
GCGGAGACCCACAGAAAAAT+GGG + tig0029039:49144-49163 None:intergenic 50.0%
!! AGTGGGTTAGCTACTCTGCT+CGG + tig0029039:49166-49185 None:intergenic 50.0%
TCCCTTCCTTGCAGAAGATG+GGG + tig0029039:49284-49303 None:intergenic 50.0%
CTCCCTTCCTTGCAGAAGAT+GGG + tig0029039:49285-49304 None:intergenic 50.0%
CAAGGAAGGGAGGATGTGTT+CGG - tig0029039:49293-49312 Msa1440260:intron 50.0%
AAGGAAGGGAGGATGTGTTC+GGG - tig0029039:49294-49313 Msa1440260:intron 50.0%
! GGATGTGTTCGGGCCAATTT+TGG - tig0029039:49304-49323 Msa1440260:intron 50.0%
AATTACGGCTGTCCCTGTCA+AGG + tig0029039:49366-49385 None:intergenic 50.0%
GAGCAGGGATGCTGCAATTA+CGG + tig0029039:49381-49400 None:intergenic 50.0%
TAATTGCAGCATCCCTGCTC+TGG - tig0029039:49381-49400 Msa1440260:intron 50.0%
! CTGTTGTTCTAAGCCAGAGC+AGG + tig0029039:49397-49416 None:intergenic 50.0%
GCGGTTAAGGTTGCAGATTG+AGG - tig0029039:49652-49671 Msa1440260:five_prime_UTR 50.0%
GTGGAACTGCAAGCAAGCTT+GGG + tig0029039:47816-47835 None:intergenic 50.0%
CTCATCTGCGTCAAATCCCT+TGG - tig0029039:48793-48812 Msa1440260:intron 50.0%
GGAGACCCACAGAAAAATGG+GGG + tig0029039:49142-49161 None:intergenic 50.0%
CGGAGACCCACAGAAAAATG+GGG + tig0029039:49143-49162 None:intergenic 50.0%
GCGGAGACCCACAGAAAAAT+GGG + tig0029039:49144-49163 None:intergenic 50.0%
!! AGTGGGTTAGCTACTCTGCT+CGG + tig0029039:49166-49185 None:intergenic 50.0%
TCCCTTCCTTGCAGAAGATG+GGG + tig0029039:49284-49303 None:intergenic 50.0%
CTCCCTTCCTTGCAGAAGAT+GGG + tig0029039:49285-49304 None:intergenic 50.0%
CAAGGAAGGGAGGATGTGTT+CGG - tig0029039:49293-49312 Msa1440260:intron 50.0%
AAGGAAGGGAGGATGTGTTC+GGG - tig0029039:49294-49313 Msa1440260:intron 50.0%
! GGATGTGTTCGGGCCAATTT+TGG - tig0029039:49304-49323 Msa1440260:intron 50.0%
AATTACGGCTGTCCCTGTCA+AGG + tig0029039:49366-49385 None:intergenic 50.0%
GAGCAGGGATGCTGCAATTA+CGG + tig0029039:49381-49400 None:intergenic 50.0%
TAATTGCAGCATCCCTGCTC+TGG - tig0029039:49381-49400 Msa1440260:intron 50.0%
! CTGTTGTTCTAAGCCAGAGC+AGG + tig0029039:49397-49416 None:intergenic 50.0%
GCGGTTAAGGTTGCAGATTG+AGG - tig0029039:49652-49671 Msa1440260:five_prime_UTR 50.0%
GGTGGAACTGCAAGCAAGCT+TGG + tig0029039:47817-47836 None:intergenic 55.0%
CGAAGTTGAGGAGTCCGACA+CGG + tig0029039:48604-48623 None:intergenic 55.0%
AGTCGTTGACGGCGAAGTTG+AGG + tig0029039:48616-48635 None:intergenic 55.0%
TCTGCTCGGGTAGTCGTTGA+CGG + tig0029039:48627-48646 None:intergenic 55.0%
ACTACCCGAGCAGATCCTTC+CGG - tig0029039:48633-48652 Msa1440260:intron 55.0%
GACCCACAGAAAAATGGGGG+CGG + tig0029039:49139-49158 None:intergenic 55.0%
GGCGGAGACCCACAGAAAAA+TGG + tig0029039:49145-49164 None:intergenic 55.0%
CTTGCAGAAGATGGGGGAGA+AGG + tig0029039:49277-49296 None:intergenic 55.0%
CTTCTCCCCCATCTTCTGCA+AGG - tig0029039:49275-49294 Msa1440260:intron 55.0%
TCCCCCATCTTCTGCAAGGA+AGG - tig0029039:49279-49298 Msa1440260:intron 55.0%
CCCTTCCTTGCAGAAGATGG+GGG + tig0029039:49283-49302 None:intergenic 55.0%
CCCCCATCTTCTGCAAGGAA+GGG - tig0029039:49280-49299 Msa1440260:intron 55.0%
CCTCCCTTCCTTGCAGAAGA+TGG + tig0029039:49286-49305 None:intergenic 55.0%
CCATCTTCTGCAAGGAAGGG+AGG - tig0029039:49283-49302 Msa1440260:intron 55.0%
AATCCTTCGACTCTCACCGC+CGG + tig0029039:49337-49356 None:intergenic 55.0%
GGTGGAACTGCAAGCAAGCT+TGG + tig0029039:47817-47836 None:intergenic 55.0%
CGAAGTTGAGGAGTCCGACA+CGG + tig0029039:48604-48623 None:intergenic 55.0%
AGTCGTTGACGGCGAAGTTG+AGG + tig0029039:48616-48635 None:intergenic 55.0%
TCTGCTCGGGTAGTCGTTGA+CGG + tig0029039:48627-48646 None:intergenic 55.0%
ACTACCCGAGCAGATCCTTC+CGG - tig0029039:48633-48652 Msa1440260:intron 55.0%
GACCCACAGAAAAATGGGGG+CGG + tig0029039:49139-49158 None:intergenic 55.0%
GGCGGAGACCCACAGAAAAA+TGG + tig0029039:49145-49164 None:intergenic 55.0%
CTTGCAGAAGATGGGGGAGA+AGG + tig0029039:49277-49296 None:intergenic 55.0%
CTTCTCCCCCATCTTCTGCA+AGG - tig0029039:49275-49294 Msa1440260:intron 55.0%
TCCCCCATCTTCTGCAAGGA+AGG - tig0029039:49279-49298 Msa1440260:intron 55.0%
CCCTTCCTTGCAGAAGATGG+GGG + tig0029039:49283-49302 None:intergenic 55.0%
CCCCCATCTTCTGCAAGGAA+GGG - tig0029039:49280-49299 Msa1440260:intron 55.0%
CCTCCCTTCCTTGCAGAAGA+TGG + tig0029039:49286-49305 None:intergenic 55.0%
CCATCTTCTGCAAGGAAGGG+AGG - tig0029039:49283-49302 Msa1440260:intron 55.0%
AATCCTTCGACTCTCACCGC+CGG + tig0029039:49337-49356 None:intergenic 55.0%
AGTTGAGGAGTCCGACACGG+CGG + tig0029039:48601-48620 None:intergenic 60.0%
TGCCACCGGAAGGATCTGCT+CGG + tig0029039:48641-48660 None:intergenic 60.0%
GATCCTTCCGGTGGCATCTC+AGG - tig0029039:48645-48664 Msa1440260:intron 60.0%
TCACCTGAGATGCCACCGGA+AGG + tig0029039:48651-48670 None:intergenic 60.0%
!! TCGCCGCCCCCATTTTTCTG+TGG - tig0029039:49133-49152 Msa1440260:intron 60.0%
!! CGCCGCCCCCATTTTTCTGT+GGG - tig0029039:49134-49153 Msa1440260:intron 60.0%
!! GGGTTAGCTACTCTGCTCGG+CGG + tig0029039:49163-49182 None:intergenic 60.0%
ACCCATGACGACGGTGAGAG+GGG + tig0029039:49226-49245 None:intergenic 60.0%
CACCCATGACGACGGTGAGA+GGG + tig0029039:49227-49246 None:intergenic 60.0%
GGAACCACCACCCATGACGA+CGG + tig0029039:49235-49254 None:intergenic 60.0%
AGAAGGTGGCAGACCGGATG+GGG + tig0029039:49260-49279 None:intergenic 60.0%
GAGAAGGTGGCAGACCGGAT+GGG + tig0029039:49261-49280 None:intergenic 60.0%
GCAGAAGATGGGGGAGAAGG+TGG + tig0029039:49274-49293 None:intergenic 60.0%
AATCCGGCGGTGAGAGTCGA+AGG - tig0029039:49331-49350 Msa1440260:intron 60.0%
AGTTGAGGAGTCCGACACGG+CGG + tig0029039:48601-48620 None:intergenic 60.0%
TGCCACCGGAAGGATCTGCT+CGG + tig0029039:48641-48660 None:intergenic 60.0%
GATCCTTCCGGTGGCATCTC+AGG - tig0029039:48645-48664 Msa1440260:intron 60.0%
TCACCTGAGATGCCACCGGA+AGG + tig0029039:48651-48670 None:intergenic 60.0%
!! TCGCCGCCCCCATTTTTCTG+TGG - tig0029039:49133-49152 Msa1440260:intron 60.0%
!! CGCCGCCCCCATTTTTCTGT+GGG - tig0029039:49134-49153 Msa1440260:intron 60.0%
!! GGGTTAGCTACTCTGCTCGG+CGG + tig0029039:49163-49182 None:intergenic 60.0%
ACCCATGACGACGGTGAGAG+GGG + tig0029039:49226-49245 None:intergenic 60.0%
CACCCATGACGACGGTGAGA+GGG + tig0029039:49227-49246 None:intergenic 60.0%
GGAACCACCACCCATGACGA+CGG + tig0029039:49235-49254 None:intergenic 60.0%
AGAAGGTGGCAGACCGGATG+GGG + tig0029039:49260-49279 None:intergenic 60.0%
GAGAAGGTGGCAGACCGGAT+GGG + tig0029039:49261-49280 None:intergenic 60.0%
GCAGAAGATGGGGGAGAAGG+TGG + tig0029039:49274-49293 None:intergenic 60.0%
AATCCGGCGGTGAGAGTCGA+AGG - tig0029039:49331-49350 Msa1440260:intron 60.0%
GCGGGGCTTAGGGCAAACGA+CGG + tig0029039:48582-48601 None:intergenic 65.0%
TTGAGGAGTCCGACACGGCG+GGG + tig0029039:48599-48618 None:intergenic 65.0%
GTTGAGGAGTCCGACACGGC+GGG + tig0029039:48600-48619 None:intergenic 65.0%
ACCCGAGCAGATCCTTCCGG+TGG - tig0029039:48636-48655 Msa1440260:intron 65.0%
GCCACCGGAAGGATCTGCTC+GGG + tig0029039:48640-48659 None:intergenic 65.0%
GAAAAATGGGGGCGGCGACG+AGG + tig0029039:49131-49150 None:intergenic 65.0%
GCCCCTCTCACCGTCGTCAT+GGG - tig0029039:49222-49241 Msa1440260:intron 65.0%
CCACCCATGACGACGGTGAG+AGG + tig0029039:49228-49247 None:intergenic 65.0%
CCTCTCACCGTCGTCATGGG+TGG - tig0029039:49225-49244 Msa1440260:intron 65.0%
CTCACCGTCGTCATGGGTGG+TGG - tig0029039:49228-49247 Msa1440260:intron 65.0%
GTGGTGGTTCCTGCCCCATC+CGG - tig0029039:49244-49263 Msa1440260:intron 65.0%
GGAGAAGGTGGCAGACCGGA+TGG + tig0029039:49262-49281 None:intergenic 65.0%
TGGGGGAGAAGGTGGCAGAC+CGG + tig0029039:49266-49285 None:intergenic 65.0%
GCGGGGCTTAGGGCAAACGA+CGG + tig0029039:48582-48601 None:intergenic 65.0%
TTGAGGAGTCCGACACGGCG+GGG + tig0029039:48599-48618 None:intergenic 65.0%
GTTGAGGAGTCCGACACGGC+GGG + tig0029039:48600-48619 None:intergenic 65.0%
ACCCGAGCAGATCCTTCCGG+TGG - tig0029039:48636-48655 Msa1440260:intron 65.0%
GCCACCGGAAGGATCTGCTC+GGG + tig0029039:48640-48659 None:intergenic 65.0%
GAAAAATGGGGGCGGCGACG+AGG + tig0029039:49131-49150 None:intergenic 65.0%
GCCCCTCTCACCGTCGTCAT+GGG - tig0029039:49222-49241 Msa1440260:intron 65.0%
CCACCCATGACGACGGTGAG+AGG + tig0029039:49228-49247 None:intergenic 65.0%
CCTCTCACCGTCGTCATGGG+TGG - tig0029039:49225-49244 Msa1440260:intron 65.0%
CTCACCGTCGTCATGGGTGG+TGG - tig0029039:49228-49247 Msa1440260:intron 65.0%
GTGGTGGTTCCTGCCCCATC+CGG - tig0029039:49244-49263 Msa1440260:intron 65.0%
GGAGAAGGTGGCAGACCGGA+TGG + tig0029039:49262-49281 None:intergenic 65.0%
TGGGGGAGAAGGTGGCAGAC+CGG + tig0029039:49266-49285 None:intergenic 65.0%
TGCCCTAAGCCCCGCCGTGT+CGG - tig0029039:48587-48606 Msa1440260:intron 70.0%
GTCCGACACGGCGGGGCTTA+GGG + tig0029039:48592-48611 None:intergenic 70.0%
AGTCCGACACGGCGGGGCTT+AGG + tig0029039:48593-48612 None:intergenic 70.0%
CGCCCCTCTCACCGTCGTCA+TGG - tig0029039:49221-49240 Msa1440260:intron 70.0%
TGCCCTAAGCCCCGCCGTGT+CGG - tig0029039:48587-48606 Msa1440260:intron 70.0%
GTCCGACACGGCGGGGCTTA+GGG + tig0029039:48592-48611 None:intergenic 70.0%
AGTCCGACACGGCGGGGCTT+AGG + tig0029039:48593-48612 None:intergenic 70.0%
CGCCCCTCTCACCGTCGTCA+TGG - tig0029039:49221-49240 Msa1440260:intron 70.0%
GGCGGCGACGAGGCTACTGG+AGG + tig0029039:49121-49140 None:intergenic 75.0%
GGTGGCAGACCGGATGGGGC+AGG + tig0029039:49256-49275 None:intergenic 75.0%
GGCGGCGACGAGGCTACTGG+AGG + tig0029039:49121-49140 None:intergenic 75.0%
GGTGGCAGACCGGATGGGGC+AGG + tig0029039:49256-49275 None:intergenic 75.0%
! GGGGGCGGCGACGAGGCTAC+TGG + tig0029039:49124-49143 None:intergenic 80.0%
! GGGGGCGGCGACGAGGCTAC+TGG + tig0029039:49124-49143 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0029039 gene 47644 49910 47644 ID=Msa1440260;Name=Msa1440260
tig0029039 mRNA 47644 49910 47644 ID=Msa1440260-mRNA-1;Parent=Msa1440260;Name=Msa1440260-mRNA-1;_AED=0.17;_eAED=0.17;_QI=344|1|1|1|0.66|0.5|4|502|163
tig0029039 exon 47644 48466 47644 ID=Msa1440260-mRNA-1:exon:12171;Parent=Msa1440260-mRNA-1
tig0029039 exon 48722 48788 48722 ID=Msa1440260-mRNA-1:exon:12170;Parent=Msa1440260-mRNA-1
tig0029039 exon 48888 49027 48888 ID=Msa1440260-mRNA-1:exon:12169;Parent=Msa1440260-mRNA-1
tig0029039 exon 49603 49910 49603 ID=Msa1440260-mRNA-1:exon:12168;Parent=Msa1440260-mRNA-1
tig0029039 five_prime_UTR 49603 49910 49603 ID=Msa1440260-mRNA-1:five_prime_utr;Parent=Msa1440260-mRNA-1
tig0029039 five_prime_UTR 48992 49027 48992 ID=Msa1440260-mRNA-1:five_prime_utr;Parent=Msa1440260-mRNA-1
tig0029039 CDS 48888 48991 48888 ID=Msa1440260-mRNA-1:cds;Parent=Msa1440260-mRNA-1
tig0029039 CDS 48722 48788 48722 ID=Msa1440260-mRNA-1:cds;Parent=Msa1440260-mRNA-1
tig0029039 CDS 48146 48466 48146 ID=Msa1440260-mRNA-1:cds;Parent=Msa1440260-mRNA-1
tig0029039 three_prime_UTR 47644 48145 47644 ID=Msa1440260-mRNA-1:three_prime_utr;Parent=Msa1440260-mRNA-1
Gene Sequence

>Msa1440260

ATGAACGGAAGAGACTCCGTCGTTTGCCCTAAGCCCCGCCGTGTCGGACTCCTCAACTTCGCCGTCAACGACTACCCGAGCAGATCCTTCCGGTGGCATCTCAGTTGCCAAGTTGAACCGTGTGATTCAAACTCATCTGCGTCAAATCCCTTGGACACAATTCTCACCAAGGATGATGATTGTGATACGGAACAATCAAGTCCTCCAGTAGCCTCGTCGCCGCCCCCATTTTTCTGTGGGTCTCCGCCGAGCAGAGTAGCTAACCCACTAATTCAGGATGCTCGATTCGGGGATGAGAATTTCTCGCCCCTCTCACCGTCGTCATGGGTGGTGGTTCCTGCCCCATCCGGTCTGCCACCTTCTCCCCCATCTTCTGCAAGGAAGGGAGGATGTGTTCGGGCCAATTTTGGTAACAATCCGGCGGTGAGAGTCGAAGGATTCGATTGCCTTGACAGGGACAGCCGTAATTGCAGCATCCCTGCTCTGGCTTAG
Protein sequence

>Msa1440260

MNGRDSVVCPKPRRVGLLNFAVNDYPSRSFRWHLSCQVEPCDSNSSASNPLDTILTKDDDCDTEQSSPPVASSPPPFFCGSPPSRVANPLIQDARFGDENFSPLSPSSWVVVPAPSGLPPSPPSSARKGGCVRANFGNNPAVRVEGFDCLDRDSRNCSIPALA*