AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0276740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0276740 MtrunA17_Chr2g0289201 97.619 378 5 3 1 378 1 374 0.0 761
Msa0276740 MtrunA17_Chr5g0439391 64.259 263 79 4 121 378 46 298 4.12e-103 306
Msa0276740 MtrunA17_Chr1g0151961 58.039 255 93 3 118 362 116 366 5.51e-90 275
Msa0276740 MtrunA17_Chr5g0413201 53.878 245 111 1 111 353 62 306 3.47e-83 256
Msa0276740 MtrunA17_Chr1g0192791 49.402 251 107 5 116 353 14 257 5.22e-67 213
Msa0276740 MtrunA17_Chr1g0149651 31.890 254 132 6 122 341 174 420 6.83e-37 138
Msa0276740 MtrunA17_Chr2g0305101 30.739 257 149 6 112 341 85 339 4.50e-36 135
Msa0276740 MtrunA17_Chr3g0137241 31.600 250 140 6 122 341 107 355 2.93e-35 132
Msa0276740 MtrunA17_Chr4g0065241 30.576 278 167 6 90 341 38 315 6.21e-35 131
Msa0276740 MtrunA17_Chr5g0398181 28.516 256 142 5 121 341 27 276 1.61e-29 115
Msa0276740 MtrunA17_Chr4g0008591 42.667 75 43 0 269 343 347 421 2.34e-12 68.6
Msa0276740 MtrunA17_Chr3g0141941 39.535 86 46 2 258 343 327 406 5.43e-12 67.0
Msa0276740 MtrunA17_Chr7g0240371 48.333 60 31 0 284 343 307 366 5.99e-12 67.0
Msa0276740 MtrunA17_Chr1g0155681 39.535 86 46 2 258 343 338 417 9.41e-12 66.6
Msa0276740 MtrunA17_Chr8g0373801 39.560 91 50 3 260 347 554 642 1.12e-11 66.6
Msa0276740 MtrunA17_Chr3g0141931 42.254 71 41 0 273 343 339 409 1.83e-11 65.5
Msa0276740 MtrunA17_Chr4g0025521 46.667 60 32 0 284 343 404 463 2.06e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0276740 AT1G62360.1 79.087 263 49 5 121 378 121 382 1.50e-132 384
Msa0276740 AT4G08150.1 52.427 309 125 5 68 362 85 385 1.59e-90 278
Msa0276740 AT1G23380.1 49.609 256 109 3 117 362 81 326 1.35e-80 250
Msa0276740 AT1G70510.1 50.410 244 121 0 117 360 65 308 3.28e-80 248
Msa0276740 AT1G23380.2 49.225 258 109 4 117 362 81 328 1.18e-78 245
Msa0276740 AT1G70510.2 49.597 248 121 1 117 360 65 312 6.44e-78 243
Msa0276740 AT4G32040.2 27.424 361 220 6 21 341 4 362 2.73e-42 152
Msa0276740 AT4G32040.1 27.424 361 220 6 21 341 4 362 3.93e-42 152
Msa0276740 AT5G25220.2 32.245 245 140 5 122 341 160 403 4.53e-40 147
Msa0276740 AT5G25220.1 32.245 245 140 5 122 341 160 403 4.62e-40 147
Msa0276740 AT5G11060.1 31.020 245 143 6 122 341 124 367 8.93e-36 135
Msa0276740 AT1G62990.1 30.924 249 142 6 121 341 29 275 1.36e-31 121
Msa0276740 AT1G75430.1 49.091 55 28 0 289 343 209 263 2.37e-11 64.3
Msa0276740 AT5G02030.1 46.667 60 32 0 284 343 350 409 2.96e-11 65.5
Msa0276740 AT1G19700.1 46.667 60 32 0 284 343 353 412 4.26e-11 64.7
Msa0276740 AT1G19700.3 46.667 60 32 0 284 343 353 412 4.26e-11 64.7
Msa0276740 AT1G19700.5 46.667 60 32 0 284 343 353 412 4.26e-11 64.7
Msa0276740 AT1G19700.4 46.667 60 32 0 284 343 353 412 4.26e-11 64.7
Msa0276740 AT1G19700.2 46.667 60 32 0 284 343 353 412 4.26e-11 64.7
Msa0276740 AT4G36870.2 39.024 82 46 2 264 343 480 559 7.84e-11 64.3
Msa0276740 AT4G36870.1 39.024 82 46 2 264 343 480 559 7.84e-11 64.3
Msa0276740 AT2G27220.1 45.000 60 33 0 284 343 230 289 9.52e-11 63.5
Msa0276740 AT2G27220.3 45.000 60 33 0 284 343 230 289 9.52e-11 63.5

Find 115 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTATTGTTAGTGGAATT+AGG 0.210507 2_3:+8990394 None:intergenic
AGAACTTTCCAAACCCTTAA+AGG 0.230018 2_3:-8989732 Msa0276740:CDS
ATTAGTATTGTTGTGGTTAT+TGG 0.247015 2_3:+8990450 None:intergenic
TCTTATGTGATGGGTGCTTT+TGG 0.272814 2_3:-8990559 Msa0276740:CDS
AGCAGAAGACAGGGAATTAA+AGG 0.275275 2_3:-8986158 Msa0276740:CDS
CATAGCTTCCTTTAAGGGTT+TGG 0.275443 2_3:+8989724 None:intergenic
ATCTGACCTAGAAGGCAAAA+AGG 0.277097 2_3:-8990665 Msa0276740:five_prime_UTR
AATTGTTGCCTTGCCTCTTT+TGG 0.282916 2_3:+8986055 None:intergenic
TTGTGGTTATTGGAATTTAT+TGG 0.285636 2_3:+8990460 None:intergenic
TGGTTTAGGTTACTATTTCA+TGG 0.291622 2_3:-8990302 Msa0276740:CDS
CATCAAAACACTCCTGGTTT+AGG 0.312805 2_3:-8990316 Msa0276740:CDS
AAAAGCATAGCTTCCTTTAA+GGG 0.321776 2_3:+8989719 None:intergenic
TCTTCTTCTTCAGATAATAT+TGG 0.323037 2_3:-8989656 Msa0276740:intron
TATTATTGTTAGTGGAATTA+GGG 0.324374 2_3:+8990395 None:intergenic
TAACCCTACGTTACGTTGTA+AGG 0.362683 2_3:-8984947 Msa0276740:three_prime_UTR
AAGCCTGCACAGATTTCCTT+TGG 0.372354 2_3:+8990924 None:intergenic
TTCTTCTTATTCTTATGTGA+TGG 0.373753 2_3:-8990569 Msa0276740:CDS
GCAGTTGGATCAGGTTGTTT+AGG 0.376419 2_3:-8989818 Msa0276740:CDS
GTGATTGTTATTATTGTTAG+TGG 0.377361 2_3:+8990387 None:intergenic
TCAATGGAGGGTAGTTCTAA+TGG 0.389732 2_3:-8990595 Msa0276740:CDS
ATAACCAGCAGCTTATTTCC+TGG 0.397368 2_3:+8984807 None:intergenic
GCTTGTGGTGTTAAAAGTCT+TGG 0.407936 2_3:-8984977 Msa0276740:three_prime_UTR
GAAGGTTGAGTTACAGAAGA+AGG 0.409072 2_3:+8991113 None:intergenic
ATCAGAAGCAAATAAACAAC+TGG 0.411205 2_3:-8985158 Msa0276740:CDS
TCTTCTTATTCTTATGTGAT+GGG 0.426756 2_3:-8990568 Msa0276740:CDS
CAAGGCAACAATTGCTTGAA+TGG 0.428670 2_3:-8986045 Msa0276740:CDS
AACCTTGCCACCACTTCACT+TGG 0.434594 2_3:+8989881 None:intergenic
CACACAAGGGTCACCCGCCC+GGG 0.436593 2_3:+8990759 None:intergenic
TCCAGCTCTAGATCAGTTCA+TGG 0.439689 2_3:-8989789 Msa0276740:CDS
GTGAGGATGAGCCATGATCT+TGG 0.442354 2_3:+8990225 None:intergenic
TTTGAATCATTAAAATAGCC+AGG 0.446877 2_3:-8984825 Msa0276740:three_prime_UTR
AATTCCCTGTCTTCTGCTTG+AGG 0.446914 2_3:+8986163 None:intergenic
AGAGGTGTTGTTATTACAGT+TGG 0.455218 2_3:+8990360 None:intergenic
AGCAAGAGTTTATGAAGAAA+AGG 0.455849 2_3:-8986093 Msa0276740:CDS
AGAAAATACAGTGGATACTT+AGG 0.456169 2_3:-8986124 Msa0276740:CDS
TCACACAAGGGTCACCCGCC+CGG 0.458954 2_3:+8990758 None:intergenic
AAGAGGAAGAAGAGCTTCCA+TGG 0.462925 2_3:+8990266 None:intergenic
ACTAAAGGCATCATCATCAT+TGG 0.476116 2_3:+8990511 None:intergenic
CTCTTTGTCTCTCTAGCTAG+TGG 0.477469 2_3:+8991019 None:intergenic
TCCTCACTATCACCGTCTCT+TGG 0.481181 2_3:-8990209 Msa0276740:CDS
TTCAGAGGACATGCAGTTTG+TGG 0.481599 2_3:-8985103 Msa0276740:CDS
TATTAGACGGTTCTTTATGA+AGG 0.485627 2_3:-8984787 Msa0276740:three_prime_UTR
GTGAGTGAGTATTAATTCAA+TGG 0.487645 2_3:-8990611 Msa0276740:exon
TAGATCCTCAAGCAGAAGAC+AGG 0.488640 2_3:-8986168 Msa0276740:CDS
TTCTGTCAAATCCAAGATCA+TGG 0.491565 2_3:-8990236 Msa0276740:CDS
CTTGTAGTGAAGGTGGAGAT+AGG 0.494451 2_3:-8986237 Msa0276740:CDS
TTTCCAAAGGAAATCTGTGC+AGG 0.494548 2_3:-8990927 Msa0276740:five_prime_UTR
TCAATCAAAGGAAACGGCAC+TGG 0.497928 2_3:-8985131 Msa0276740:CDS
CTGGCTCTAGCAGAGTCAAC+AGG 0.498247 2_3:-8985186 Msa0276740:CDS
ATGTGCAACTGCAGTGAGAA+TGG 0.501403 2_3:-8989849 Msa0276740:CDS
ATTGTTAGTGGAATTAGGGA+TGG 0.507470 2_3:+8990399 None:intergenic
GGTGGAGATGCAGTTGGATC+AGG 0.509504 2_3:-8989827 Msa0276740:CDS
GAAGGGTTAGTGTGAGGCAT+TGG 0.510312 2_3:+8991131 None:intergenic
AAGGTTGAGTTACAGAAGAA+GGG 0.511993 2_3:+8991114 None:intergenic
TTTGACAGAAGAAGAAGAAG+AGG 0.516596 2_3:+8990249 None:intergenic
GGACATGCAGTTTGTGGTGA+TGG 0.522795 2_3:-8985097 Msa0276740:CDS
GCAGAAGACAGGGAATTAAA+GGG 0.524288 2_3:-8986157 Msa0276740:CDS
AGCCTACATCAACTGTCAAA+AGG 0.527463 2_3:-8990185 Msa0276740:intron
AAAAGGAAAGCTTCCAAAAG+AGG 0.530019 2_3:-8986068 Msa0276740:CDS
TAGTGGAATTAGGGATGGGA+AGG 0.531021 2_3:+8990404 None:intergenic
GGTTTATCAATCAAAGGAAA+CGG 0.544135 2_3:-8985137 Msa0276740:CDS
AGTGAAGGTGGAGATAGGAA+TGG 0.544711 2_3:-8986232 Msa0276740:CDS
ATAACAGGAATCACAGAAGC+TGG 0.544820 2_3:-8985205 Msa0276740:intron
AATAACCATCAAAACACTCC+TGG 0.547863 2_3:-8990322 Msa0276740:CDS
TCCATGAACTGATCTAGAGC+TGG 0.552608 2_3:+8989788 None:intergenic
ATTACCTCGGTGCTTGCTTG+TGG 0.553766 2_3:-8984992 Msa0276740:three_prime_UTR
TACTTCTTCATGTAACTGAC+TGG 0.555243 2_3:-8990865 Msa0276740:five_prime_UTR
TTGTTAGTGGAATTAGGGAT+GGG 0.555961 2_3:+8990400 None:intergenic
ATGTAATAGTGTGGATGACT+TGG 0.557999 2_3:+8985072 None:intergenic
TGTTTGCATTAGTATTGTTG+TGG 0.559213 2_3:+8990443 None:intergenic
AGTGAGTATTAATTCAATGG+AGG 0.559921 2_3:-8990608 Msa0276740:exon
ACAACTGGTTTATCAATCAA+AGG 0.560044 2_3:-8985143 Msa0276740:CDS
CACCAAGTGAAGTGGTGGCA+AGG 0.566973 2_3:-8989883 Msa0276740:CDS
TGATGAGATGAAGTGACTAA+AGG 0.572274 2_3:+8990496 None:intergenic
ATATGATCAGCTTGTAGTGA+AGG 0.580233 2_3:-8986247 Msa0276740:intron
AAAGGCATCATCATCATTGG+AGG 0.581233 2_3:+8990514 None:intergenic
AAGTCATCCACACTATTACA+TGG 0.581325 2_3:-8985070 Msa0276740:CDS
CATGGTGTTAGATAGATCCA+TGG 0.582210 2_3:+8985023 None:intergenic
ATAAGCTGCTGGTTATTAGA+CGG 0.585249 2_3:-8984800 Msa0276740:three_prime_UTR
ATAGCCAGGAAATAAGCTGC+TGG 0.585397 2_3:-8984811 Msa0276740:three_prime_UTR
TACATGAAGAAGTAGTGAAG+AGG 0.589580 2_3:+8990874 None:intergenic
TGTGCAACTGCAGTGAGAAT+GGG 0.589860 2_3:-8989848 Msa0276740:CDS
GGTTGGAGCACCAAGTGAAG+TGG 0.591898 2_3:-8989891 Msa0276740:CDS
TCTCAGCAATTCATATCCCA+TGG 0.592615 2_3:-8985040 Msa0276740:CDS
TCTAGCTAGTGGATAATACA+AGG 0.595066 2_3:+8991030 None:intergenic
ACAAACTGCATGTCCTCTGA+AGG 0.595663 2_3:+8985105 None:intergenic
TGATCAGCTTGTAGTGAAGG+TGG 0.598391 2_3:-8986244 Msa0276740:intron
TGAATTAATACTCACTCACT+TGG 0.600829 2_3:+8990615 None:intergenic
GTGAGTATTAATTCAATGGA+GGG 0.604163 2_3:-8990607 Msa0276740:exon
GGCAACAATTGCTTGAATGG+TGG 0.608396 2_3:-8986042 Msa0276740:CDS
TCCAAGAGACGGTGATAGTG+AGG 0.612274 2_3:+8990208 None:intergenic
ATGCCTTACAACGTAACGTA+GGG 0.613119 2_3:+8984944 None:intergenic
TGGAGCACCAAGTGAAGTGG+TGG 0.614555 2_3:-8989888 Msa0276740:CDS
AGAAGCAGTAGAGTGCACGC+GGG 0.620809 2_3:+8991070 None:intergenic
ACTAATGCAAACAACATAAG+CGG 0.624162 2_3:-8990433 Msa0276740:CDS
GAAAGCTTCCAAAAGAGGCA+AGG 0.624760 2_3:-8986063 Msa0276740:CDS
TGATGTAGGCTTCCAAGAGA+CGG 0.625494 2_3:+8990197 None:intergenic
GAGAAGCAGTAGAGTGCACG+CGG 0.626137 2_3:+8991069 None:intergenic
ACATTATCCATGTAATAGTG+TGG 0.627160 2_3:+8985063 None:intergenic
ATGGACAACATCAACAACCA+TGG 0.630008 2_3:-8990283 Msa0276740:CDS
ACGGCACTGGAAGCCTTCAG+AGG 0.633606 2_3:-8985118 Msa0276740:CDS
GTGGTGCTTACAGATGGGTA+AGG 0.637343 2_3:+8986001 None:intergenic
ATGGTGTTAGATAGATCCAT+GGG 0.639715 2_3:+8985024 None:intergenic
AGATCCTCAAGCAGAAGACA+GGG 0.640900 2_3:-8986167 Msa0276740:CDS
CCATGCTCTAGTTATTACCT+CGG 0.642109 2_3:-8985005 Msa0276740:exon
ATGAAATAGTAACCTAAACC+AGG 0.642596 2_3:+8990304 None:intergenic
CCGAGGTAATAACTAGAGCA+TGG 0.644204 2_3:+8985005 None:intergenic
AATGCCTTACAACGTAACGT+AGG 0.645137 2_3:+8984943 None:intergenic
CATTAAATGCTGAAAATGTG+TGG 0.653186 2_3:-8990970 Msa0276740:five_prime_UTR
ACAGAAGAAGGGTTAGTGTG+AGG 0.653342 2_3:+8991125 None:intergenic
AGAATGGGTGGAGATGCAGT+TGG 0.655702 2_3:-8989833 Msa0276740:CDS
GCAACTGCAGTGAGAATGGG+TGG 0.659150 2_3:-8989845 Msa0276740:CDS
GGTGGAGCAGACATTACAAG+TGG 0.680780 2_3:-8986024 Msa0276740:CDS
GAAGCAGTAGAGTGCACGCG+GGG 0.707059 2_3:+8991071 None:intergenic
AACACCACAAGCAAGCACCG+AGG 0.759746 2_3:+8984988 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATATATTTAAAAAAA+AGG + chr2_3:8989218-8989237 None:intergenic 0.0%
!! ATTCTAATAATTAATAACAA+TGG - chr2_3:8988332-8988351 Msa0276740:intron 10.0%
!! TTTGAATATATGAAAATAAA+AGG + chr2_3:8989562-8989581 None:intergenic 10.0%
!! AAATTTAATTAGAAATATTG+TGG + chr2_3:8989942-8989961 None:intergenic 10.0%
!! TTGTCAATATTAGTAATAAA+TGG + chr2_3:8985861-8985880 None:intergenic 15.0%
!!! TTCATAAATTTTTTACTTCA+TGG - chr2_3:8985958-8985977 Msa0276740:intron 15.0%
!!! ACTTCAATTTAATTTAATGA+AGG + chr2_3:8986576-8986595 None:intergenic 15.0%
!! TAAATAATAACCAATGAATT+AGG - chr2_3:8987116-8987135 Msa0276740:intron 15.0%
!! AAATAATAACCAATGAATTA+GGG - chr2_3:8987117-8987136 Msa0276740:intron 15.0%
!!! AAGTTTTTTTATGTTTTGAA+GGG + chr2_3:8988060-8988079 None:intergenic 15.0%
!! TAAATATAGAAATCTAACAT+TGG + chr2_3:8989246-8989265 None:intergenic 15.0%
!! TACTATAATTTATGAATAAC+AGG - chr2_3:8990663-8990682 Msa0276740:five_prime_UTR 15.0%
!!! TAATACAAGGTTTTTTATGA+AGG + chr2_3:8984843-8984862 None:intergenic 20.0%
!!! TTTTATGGTAAAAAAGTAAC+AGG + chr2_3:8985104-8985123 None:intergenic 20.0%
!! TATTATTGTTAGTGGAATTA+GGG + chr2_3:8985491-8985510 None:intergenic 20.0%
!! TTATTATTGTTAGTGGAATT+AGG + chr2_3:8985492-8985511 None:intergenic 20.0%
!! TTTATCATCTATGCTTAAAA+GGG + chr2_3:8985913-8985932 None:intergenic 20.0%
!!! TACTTCATGGAAATTATTTT+AGG - chr2_3:8985971-8985990 Msa0276740:intron 20.0%
!!! AAAATCTGAATAGTATTTTC+TGG + chr2_3:8986293-8986312 None:intergenic 20.0%
!!! AAGACATTGTTTCTTTTTTT+GGG + chr2_3:8986484-8986503 None:intergenic 20.0%
!! GTAGTACATATATATTTCAT+TGG - chr2_3:8986800-8986819 Msa0276740:intron 20.0%
!!! CTTGATAGTATTGTTTTTAT+GGG - chr2_3:8986896-8986915 Msa0276740:intron 20.0%
!! TTTGTAATGAATCCAAAATT+TGG - chr2_3:8987050-8987069 Msa0276740:intron 20.0%
!! AATAAAATATTCCATCCATA+GGG + chr2_3:8987474-8987493 None:intergenic 20.0%
!! TAATAAAATATTCCATCCAT+AGG + chr2_3:8987475-8987494 None:intergenic 20.0%
!!! TTACTACTATATACTTCTTT+TGG + chr2_3:8987900-8987919 None:intergenic 20.0%
!! AAACATTGAATTGAAAACTT+TGG + chr2_3:8987939-8987958 None:intergenic 20.0%
!! TGATATACTACAAAAATAGA+GGG + chr2_3:8987983-8988002 None:intergenic 20.0%
!! ATGATATACTACAAAAATAG+AGG + chr2_3:8987984-8988003 None:intergenic 20.0%
!!! CAAGTTTTTTTATGTTTTGA+AGG + chr2_3:8988061-8988080 None:intergenic 20.0%
!! AAACATGTATAATTGATAAG+TGG + chr2_3:8988089-8988108 None:intergenic 20.0%
!! CTAAGATAATCTTTCTATAT+AGG + chr2_3:8988150-8988169 None:intergenic 20.0%
!! CTATATAGAAAGATTATCTT+AGG - chr2_3:8988148-8988167 Msa0276740:intron 20.0%
!!! GATCGATTTTCTTTATAAAA+TGG + chr2_3:8988217-8988236 None:intergenic 20.0%
!! ATTACTTCAAACATAATCAA+AGG + chr2_3:8988358-8988377 None:intergenic 20.0%
!! TATTATCATAGGGATAAAAA+TGG + chr2_3:8988394-8988413 None:intergenic 20.0%
!! CAAAATACTTAACTTATGAA+GGG + chr2_3:8988485-8988504 None:intergenic 20.0%
!! TACATAAAAGTAAACCAATA+AGG + chr2_3:8988889-8988908 None:intergenic 20.0%
!!! AATTAAAAATAGGAGTACAA+GGG - chr2_3:8988928-8988947 Msa0276740:intron 20.0%
!! TCCTATAATCAAATATATGT+GGG + chr2_3:8989002-8989021 None:intergenic 20.0%
!! AGGTTAAAATATTAACAATG+TGG + chr2_3:8989198-8989217 None:intergenic 20.0%
!!! TGACTATAAATTGTTTTTAC+CGG - chr2_3:8989394-8989413 Msa0276740:intron 20.0%
!! GCAAATAATATAACATTAGA+AGG + chr2_3:8989589-8989608 None:intergenic 20.0%
!! TTTATGAAGAAAAGGAAAAA+AGG - chr2_3:8989798-8989817 Msa0276740:CDS 20.0%
!!! AAGGATTCAAATTTTTAAAG+TGG + chr2_3:8989904-8989923 None:intergenic 20.0%
!!! TTTGATTTCTTTCATTTCAT+AGG - chr2_3:8989960-8989979 Msa0276740:intron 20.0%
!! ATTTATTAAAATCCGTAACT+AGG + chr2_3:8989992-8990011 None:intergenic 20.0%
!! TTTGCAAATTTGAAAAATCA+TGG + chr2_3:8990157-8990176 None:intergenic 20.0%
!!! ATTTGAAGACAGATTTTTTA+AGG - chr2_3:8990233-8990252 Msa0276740:CDS 20.0%
!! TCTATATCAAATGTGTAAAT+TGG - chr2_3:8990305-8990324 Msa0276740:CDS 20.0%
!! AATACATGTTTATATGGTTA+GGG + chr2_3:8990547-8990566 None:intergenic 20.0%
!! TTGTACAATACATGTTTATA+TGG + chr2_3:8990553-8990572 None:intergenic 20.0%
!!! GTACAATTTACTTTTTTTGA+AGG - chr2_3:8990567-8990586 Msa0276740:CDS 20.0%
!!! TAAATAGTGATAGTGTTTTG+TGG + chr2_3:8985063-8985082 None:intergenic 25.0%
!!! TACTTTTTTACCATAAAACC+CGG - chr2_3:8985106-8985125 Msa0276740:CDS 25.0%
!!! TTTGTTTTTGTTTCACACAA+GGG + chr2_3:8985140-8985159 None:intergenic 25.0%
!!! TTTTGTTTTTGTTTCACACA+AGG + chr2_3:8985141-8985160 None:intergenic 25.0%
! TTCTTCTTATTCTTATGTGA+TGG - chr2_3:8985314-8985333 Msa0276740:intron 25.0%
! TCTTCTTATTCTTATGTGAT+GGG - chr2_3:8985315-8985334 Msa0276740:intron 25.0%
! TTGTGGTTATTGGAATTTAT+TGG + chr2_3:8985426-8985445 None:intergenic 25.0%
! ATTAGTATTGTTGTGGTTAT+TGG + chr2_3:8985436-8985455 None:intergenic 25.0%
!! GTGATTGTTATTATTGTTAG+TGG + chr2_3:8985499-8985518 None:intergenic 25.0%
!!! CTTTTTTTGTTTGACAAGTT+TGG - chr2_3:8985777-8985796 Msa0276740:intron 25.0%
!!! ATAATTGTACTTTGAAACTG+TGG - chr2_3:8985819-8985838 Msa0276740:intron 25.0%
!!! TAATTGTACTTTGAAACTGT+GGG - chr2_3:8985820-8985839 Msa0276740:intron 25.0%
! CTTTATCATCTATGCTTAAA+AGG + chr2_3:8985914-8985933 None:intergenic 25.0%
!!! TCATGGAAATTATTTTAGGT+TGG - chr2_3:8985975-8985994 Msa0276740:intron 25.0%
!! AAACTGTAAGATTTTTGAAC+TGG + chr2_3:8986208-8986227 None:intergenic 25.0%
! TCTTCTTCTTCAGATAATAT+TGG - chr2_3:8986227-8986246 Msa0276740:CDS 25.0%
!!! CAAGACATTGTTTCTTTTTT+TGG + chr2_3:8986485-8986504 None:intergenic 25.0%
!! TATTTGGAACTCACTTATTT+AGG + chr2_3:8986713-8986732 None:intergenic 25.0%
!! GCATTTTTGTCTGAAAATAA+AGG - chr2_3:8986761-8986780 Msa0276740:intron 25.0%
! CATATATATTTCATTGGTGT+TGG - chr2_3:8986806-8986825 Msa0276740:intron 25.0%
! TTGAAGGAACTTAACTATAT+AGG - chr2_3:8986833-8986852 Msa0276740:intron 25.0%
!!! GCTTGATAGTATTGTTTTTA+TGG - chr2_3:8986895-8986914 Msa0276740:intron 25.0%
!! TTAAAATTTCCCTTTTGATG+AGG - chr2_3:8986957-8986976 Msa0276740:intron 25.0%
! TCACAAGTTTCTTTCTAAAT+TGG - chr2_3:8987186-8987205 Msa0276740:intron 25.0%
!! GTGGATTTTAGATTATGATA+TGG - chr2_3:8987275-8987294 Msa0276740:intron 25.0%
!! AAAAATCTTGCAAAGTTGAT+TGG - chr2_3:8987312-8987331 Msa0276740:intron 25.0%
!!! CATAGCTTAATCTCTTTTTT+AGG + chr2_3:8987351-8987370 None:intergenic 25.0%
! TAAACTCACCATTATTCTTA+AGG + chr2_3:8987388-8987407 None:intergenic 25.0%
! TGCTTGTCTTTAACTAAAAA+TGG - chr2_3:8987643-8987662 Msa0276740:intron 25.0%
!! TTTTCTATGATGTTCATTGT+TGG - chr2_3:8987688-8987707 Msa0276740:intron 25.0%
! GATATACTACAAAAATAGAG+GGG + chr2_3:8987982-8988001 None:intergenic 25.0%
!! AGAAAGATTATCTTAGGTTT+TGG - chr2_3:8988154-8988173 Msa0276740:intron 25.0%
! TAACTAAATCCAAGTTTGTA+AGG - chr2_3:8988180-8988199 Msa0276740:intron 25.0%
! AAATGCATAGCTTAACTAAA+TGG + chr2_3:8988261-8988280 None:intergenic 25.0%
!! TTAAGCTATGCATTTTTCTT+CGG - chr2_3:8988266-8988285 Msa0276740:intron 25.0%
! AGTGGAAATCTATTATCATA+GGG + chr2_3:8988404-8988423 None:intergenic 25.0%
! CCAAAATACTTAACTTATGA+AGG + chr2_3:8988486-8988505 None:intergenic 25.0%
!! CCTTCATAAGTTAAGTATTT+TGG - chr2_3:8988483-8988502 Msa0276740:intron 25.0%
!! TTTAACTTTGTCTTCTTTGA+AGG - chr2_3:8988542-8988561 Msa0276740:intron 25.0%
!! AAGCTACTAAATTATTGGTT+AGG + chr2_3:8988777-8988796 None:intergenic 25.0%
! AAGCTAAGCTACTAAATTAT+TGG + chr2_3:8988782-8988801 None:intergenic 25.0%
! AATAATTTAGTAGCTTAGCT+TGG - chr2_3:8988781-8988800 Msa0276740:intron 25.0%
!! ACTATGTTTGTTAACCTTAT+TGG - chr2_3:8988872-8988891 Msa0276740:intron 25.0%
! GAAGAGTTCCAATTAAAAAT+AGG - chr2_3:8988918-8988937 Msa0276740:intron 25.0%
!!! CTTGTACTCCTATTTTTAAT+TGG + chr2_3:8988929-8988948 None:intergenic 25.0%
!! CAATTAAAAATAGGAGTACA+AGG - chr2_3:8988927-8988946 Msa0276740:intron 25.0%
!! ATTAAAAATAGGAGTACAAG+GGG - chr2_3:8988929-8988948 Msa0276740:intron 25.0%
! TATAATCAAATATATGTGGG+GGG + chr2_3:8988999-8989018 None:intergenic 25.0%
! CTATAATCAAATATATGTGG+GGG + chr2_3:8989000-8989019 None:intergenic 25.0%
! CCTATAATCAAATATATGTG+GGG + chr2_3:8989001-8989020 None:intergenic 25.0%
! GTCCTATAATCAAATATATG+TGG + chr2_3:8989003-8989022 None:intergenic 25.0%
! ATATTTGATTATAGGACCTA+AGG - chr2_3:8989006-8989025 Msa0276740:intron 25.0%
! ATGGATATTTGTATATATGG+GGG + chr2_3:8989143-8989162 None:intergenic 25.0%
! CATGGATATTTGTATATATG+GGG + chr2_3:8989144-8989163 None:intergenic 25.0%
! CCATGGATATTTGTATATAT+GGG + chr2_3:8989145-8989164 None:intergenic 25.0%
! ACCATGGATATTTGTATATA+TGG + chr2_3:8989146-8989165 None:intergenic 25.0%
!! ATCAAAATGGTTAGGATTTT+TGG + chr2_3:8989169-8989188 None:intergenic 25.0%
!!! ATTTTAATGTTCTGTTTACG+AGG - chr2_3:8989265-8989284 Msa0276740:intron 25.0%
! ATTACTTACACATGAATAGA+AGG + chr2_3:8989309-8989328 None:intergenic 25.0%
! AAATGTCATAACATAGAACT+TGG - chr2_3:8989464-8989483 Msa0276740:intron 25.0%
! TCAAATACTAAATGCATGTT+CGG + chr2_3:8990219-8990238 None:intergenic 25.0%
!! AGTTGTTTGCATTAATTTGA+AGG - chr2_3:8990266-8990285 Msa0276740:CDS 25.0%
! TCAAATGTGTAAATTGGATT+TGG - chr2_3:8990311-8990330 Msa0276740:CDS 25.0%
! CAAATGTGTAAATTGGATTT+GGG - chr2_3:8990312-8990331 Msa0276740:CDS 25.0%
!! TCAAAATCTGCATTGATATT+TGG - chr2_3:8990439-8990458 Msa0276740:CDS 25.0%
! CAATACATGTTTATATGGTT+AGG + chr2_3:8990548-8990567 None:intergenic 25.0%
! TTTGAATCATTAAAATAGCC+AGG - chr2_3:8991058-8991077 Msa0276740:five_prime_UTR 25.0%
CATTAAATGCTGAAAATGTG+TGG - chr2_3:8984913-8984932 Msa0276740:three_prime_UTR 30.0%
! GATTAACACTCATTTTCCAA+AGG - chr2_3:8984943-8984962 Msa0276740:three_prime_UTR 30.0%
!!! TTTTTGACTTCTTCTACTAC+TGG + chr2_3:8984988-8985007 None:intergenic 30.0%
!!! ACTTTTTTACCATAAAACCC+GGG - chr2_3:8985107-8985126 Msa0276740:CDS 30.0%
AAAGAAAAATCTGACCTAGA+AGG - chr2_3:8985210-8985229 Msa0276740:intron 30.0%
AGGCAAAAAGGGTAATAAAA+AGG - chr2_3:8985230-8985249 Msa0276740:intron 30.0%
!! TAAAAAGGAAGTGTTACTTG+TGG - chr2_3:8985245-8985264 Msa0276740:intron 30.0%
TGAATTAATACTCACTCACT+TGG + chr2_3:8985271-8985290 None:intergenic 30.0%
GTGAGTGAGTATTAATTCAA+TGG - chr2_3:8985272-8985291 Msa0276740:intron 30.0%
AGTGAGTATTAATTCAATGG+AGG - chr2_3:8985275-8985294 Msa0276740:intron 30.0%
GTGAGTATTAATTCAATGGA+GGG - chr2_3:8985276-8985295 Msa0276740:intron 30.0%
TGTTTGCATTAGTATTGTTG+TGG + chr2_3:8985443-8985462 None:intergenic 30.0%
ACTAATGCAAACAACATAAG+CGG - chr2_3:8985450-8985469 Msa0276740:intron 30.0%
!!! ATTTTGAAGCATGATAGAAG+AGG + chr2_3:8985544-8985563 None:intergenic 30.0%
ATGAAATAGTAACCTAAACC+AGG + chr2_3:8985582-8985601 None:intergenic 30.0%
! TGGTTTAGGTTACTATTTCA+TGG - chr2_3:8985581-8985600 Msa0276740:intron 30.0%
! AAAAGCATAGCTTCCTTTAA+GGG + chr2_3:8986167-8986186 None:intergenic 30.0%
! AAAAAGCATAGCTTCCTTTA+AGG + chr2_3:8986168-8986187 None:intergenic 30.0%
!!! AAGCTATGCTTTTTCTTCAA+AGG - chr2_3:8986174-8986193 Msa0276740:CDS 30.0%
TTCCTTAAACAATGCTCTTA+GGG + chr2_3:8986461-8986480 None:intergenic 30.0%
TTCCAAATACTTGAAACCAA+AGG - chr2_3:8986724-8986743 Msa0276740:intron 30.0%
GACAAAAATGCATGAGTTAA+GGG + chr2_3:8986752-8986771 None:intergenic 30.0%
AGACAAAAATGCATGAGTTA+AGG + chr2_3:8986753-8986772 None:intergenic 30.0%
TGTCTGAAAATAAAGGTAGA+TGG - chr2_3:8986768-8986787 Msa0276740:intron 30.0%
GTAATGAATCCAAAATTTGG+AGG - chr2_3:8987053-8987072 Msa0276740:intron 30.0%
TTAAGCTATGATGTGTTAGT+AGG - chr2_3:8987361-8987380 Msa0276740:intron 30.0%
TAGTAGGTCCTTAAGAATAA+TGG - chr2_3:8987377-8987396 Msa0276740:intron 30.0%
! TTTTCTCATTTGTCTCATCA+AGG - chr2_3:8987430-8987449 Msa0276740:intron 30.0%
!! ATGTATATTTTTGTGTCTGC+AGG - chr2_3:8987544-8987563 Msa0276740:intron 30.0%
CATCATAGAAAAATGCATGT+AGG + chr2_3:8987680-8987699 None:intergenic 30.0%
AACCTTATCACATAATGCAT+TGG - chr2_3:8987814-8987833 Msa0276740:intron 30.0%
ATCCAATGCATTATGTGATA+AGG + chr2_3:8987819-8987838 None:intergenic 30.0%
GAAAACTTTGGATCAATATG+TGG + chr2_3:8987927-8987946 None:intergenic 30.0%
TAAGACAGTACATTACTACA+AGG + chr2_3:8988037-8988056 None:intergenic 30.0%
! ATCCAAGTTTGTAAGGTTTT+CGG - chr2_3:8988187-8988206 Msa0276740:intron 30.0%
ACAGTGTAATCTTAATGAGA+AGG + chr2_3:8988308-8988327 None:intergenic 30.0%
CAGTGGAAATCTATTATCAT+AGG + chr2_3:8988405-8988424 None:intergenic 30.0%
CTATGATAATAGATTTCCAC+TGG - chr2_3:8988403-8988422 Msa0276740:intron 30.0%
! TTTGTCTTCTTTGAAGGAAA+AGG - chr2_3:8988548-8988567 Msa0276740:intron 30.0%
TGAAGGTTAACATTTGAACT+AGG + chr2_3:8988664-8988683 None:intergenic 30.0%
TCAAATGTTAACCTTCAATG+TGG - chr2_3:8988667-8988686 Msa0276740:intron 30.0%
!! GACAAATTTTGATACCACAA+GGG + chr2_3:8988755-8988774 None:intergenic 30.0%
AGCTAGTTGAAATAGTATCA+TGG - chr2_3:8988833-8988852 Msa0276740:intron 30.0%
CCCCACATATATTTGATTAT+AGG - chr2_3:8988998-8989017 Msa0276740:intron 30.0%
TAATTTGGCATTCAGTTACT+TGG + chr2_3:8989094-8989113 None:intergenic 30.0%
CCCATATATACAAATATCCA+TGG - chr2_3:8989142-8989161 Msa0276740:intron 30.0%
AATGTGGAGTGAAATCAAAA+TGG + chr2_3:8989182-8989201 None:intergenic 30.0%
! GGAATCAACTTTTTGCAAAT+CGG - chr2_3:8989485-8989504 Msa0276740:intron 30.0%
AGAAAATACAGTGGATACTT+AGG - chr2_3:8989759-8989778 Msa0276740:CDS 30.0%
AGCAAGAGTTTATGAAGAAA+AGG - chr2_3:8989790-8989809 Msa0276740:CDS 30.0%
!! AGTGATTTGCTAAAATTGTG+TGG - chr2_3:8990066-8990085 Msa0276740:intron 30.0%
TTGGAGCTACAAAAAAATCA+CGG + chr2_3:8990095-8990114 None:intergenic 30.0%
TTATTGCAAAAGCTACACAT+TGG + chr2_3:8990114-8990133 None:intergenic 30.0%
GCAAATTTGAAAAATCATGG+TGG + chr2_3:8990154-8990173 None:intergenic 30.0%
! TGTTTATATGGTTAGGGTTT+TGG + chr2_3:8990541-8990560 None:intergenic 30.0%
ATCAGAAGCAAATAAACAAC+TGG - chr2_3:8990725-8990744 Msa0276740:five_prime_UTR 30.0%
! ACAACTGGTTTATCAATCAA+AGG - chr2_3:8990740-8990759 Msa0276740:five_prime_UTR 30.0%
GGTTTATCAATCAAAGGAAA+CGG - chr2_3:8990746-8990765 Msa0276740:five_prime_UTR 30.0%
ACATTATCCATGTAATAGTG+TGG + chr2_3:8990823-8990842 None:intergenic 30.0%
TATTAGACGGTTCTTTATGA+AGG - chr2_3:8991096-8991115 Msa0276740:five_prime_UTR 30.0%
AAGGTTGAGTTACAGAAGAA+GGG + chr2_3:8984772-8984791 None:intergenic 35.0%
! TCTAGCTAGTGGATAATACA+AGG + chr2_3:8984856-8984875 None:intergenic 35.0%
TACATGAAGAAGTAGTGAAG+AGG + chr2_3:8985012-8985031 None:intergenic 35.0%
TACTTCTTCATGTAACTGAC+TGG - chr2_3:8985018-8985037 Msa0276740:CDS 35.0%
!! ATAGTGATAGTGTTTTGTGG+TGG + chr2_3:8985060-8985079 None:intergenic 35.0%
! TATTACCCTTTTTGCCTTCT+AGG + chr2_3:8985227-8985246 None:intergenic 35.0%
!! ACTAAAGGCATCATCATCAT+TGG + chr2_3:8985375-8985394 None:intergenic 35.0%
TGATGAGATGAAGTGACTAA+AGG + chr2_3:8985390-8985409 None:intergenic 35.0%
TTGTTAGTGGAATTAGGGAT+GGG + chr2_3:8985486-8985505 None:intergenic 35.0%
ATTGTTAGTGGAATTAGGGA+TGG + chr2_3:8985487-8985506 None:intergenic 35.0%
!! AGAGGTGTTGTTATTACAGT+TGG + chr2_3:8985526-8985545 None:intergenic 35.0%
AATAACCATCAAAACACTCC+TGG - chr2_3:8985561-8985580 Msa0276740:intron 35.0%
TTTGACAGAAGAAGAAGAAG+AGG + chr2_3:8985637-8985656 None:intergenic 35.0%
TTCTGTCAAATCCAAGATCA+TGG - chr2_3:8985647-8985666 Msa0276740:intron 35.0%
AGAACTTTCCAAACCCTTAA+AGG - chr2_3:8986151-8986170 Msa0276740:CDS 35.0%
GTTCCTTAAACAATGCTCTT+AGG + chr2_3:8986462-8986481 None:intergenic 35.0%
! CACCTTTGGTTTCAAGTATT+TGG + chr2_3:8986729-8986748 None:intergenic 35.0%
TTTCTGTGACCTCATCAAAA+GGG + chr2_3:8986969-8986988 None:intergenic 35.0%
ATCCAAAATTTGGAGGACTT+CGG - chr2_3:8987060-8987079 Msa0276740:intron 35.0%
CAGAAGAAACCCTAATTCAT+TGG + chr2_3:8987129-8987148 None:intergenic 35.0%
!! AGGAAAGTACTTTACCTCTT+TGG + chr2_3:8987240-8987259 None:intergenic 35.0%
! AAAGAGGTAAAGTACTTTCC+TGG - chr2_3:8987239-8987258 Msa0276740:intron 35.0%
! AAGAGGTAAAGTACTTTCCT+GGG - chr2_3:8987240-8987259 Msa0276740:intron 35.0%
TGGTGCTTATCAAAAAACTG+TGG - chr2_3:8987708-8987727 Msa0276740:intron 35.0%
! AAACATGACCAAGCTTTTAG+TGG - chr2_3:8987841-8987860 Msa0276740:intron 35.0%
TCAATGATCCACTAAAAGCT+TGG + chr2_3:8987852-8987871 None:intergenic 35.0%
!! TTCTAGCTTCCAACTATGTA+TGG - chr2_3:8987873-8987892 Msa0276740:intron 35.0%
! TCTAGCTTCCAACTATGTAT+GGG - chr2_3:8987874-8987893 Msa0276740:intron 35.0%
TGTAGTATATCATCGTATGC+TGG - chr2_3:8987991-8988010 Msa0276740:intron 35.0%
! TCCAAGTTTGTAAGGTTTTC+GGG - chr2_3:8988188-8988207 Msa0276740:intron 35.0%
! TATGCATTTTTCTTCGGCTT+TGG - chr2_3:8988272-8988291 Msa0276740:intron 35.0%
!!! TGGTTTTGATTTCTGCATCT+AGG - chr2_3:8988423-8988442 Msa0276740:intron 35.0%
!! AAAGGAGTGTCCATTATTTC+AGG - chr2_3:8988566-8988585 Msa0276740:intron 35.0%
!! AAGGAGTGTCCATTATTTCA+GGG - chr2_3:8988567-8988586 Msa0276740:intron 35.0%
GCATCTAAACCCTGAAATAA+TGG + chr2_3:8988579-8988598 None:intergenic 35.0%
TATTTCAGGGTTTAGATGCA+TGG - chr2_3:8988580-8988599 Msa0276740:intron 35.0%
CTACACATCCATTATTTCCA+AGG + chr2_3:8988608-8988627 None:intergenic 35.0%
AACATTTGAACTAGGTGCAT+AGG + chr2_3:8988656-8988675 None:intergenic 35.0%
! TGATTGATTCACCACATTGA+AGG + chr2_3:8988681-8988700 None:intergenic 35.0%
!! GGACAAATTTTGATACCACA+AGG + chr2_3:8988756-8988775 None:intergenic 35.0%
GCTGAAACTAGCATATATGT+TGG + chr2_3:8988816-8988835 None:intergenic 35.0%
TACTCATCCATATACAACCA+AGG - chr2_3:8988952-8988971 Msa0276740:intron 35.0%
ACTCATCCATATACAACCAA+GGG - chr2_3:8988953-8988972 Msa0276740:intron 35.0%
GTCATATGAATTGCATCCTT+AGG + chr2_3:8989025-8989044 None:intergenic 35.0%
! CTTTTCTTTGAGTGGTGTTT+AGG + chr2_3:8989047-8989066 None:intergenic 35.0%
CTAAACACCACTCAAAGAAA+AGG - chr2_3:8989045-8989064 Msa0276740:intron 35.0%
!! GTTACTTGGAAGGTATTTCA+TGG + chr2_3:8989080-8989099 None:intergenic 35.0%
GGAGTGAAATCAAAATGGTT+AGG + chr2_3:8989177-8989196 None:intergenic 35.0%
AATGTTCTGTTTACGAGGAT+TGG - chr2_3:8989270-8989289 Msa0276740:intron 35.0%
CCAACAACAATAATTGCTAC+CGG + chr2_3:8989416-8989435 None:intergenic 35.0%
! CGGTAGCAATTATTGTTGTT+GGG - chr2_3:8989414-8989433 Msa0276740:intron 35.0%
ATATGATCAGCTTGTAGTGA+AGG - chr2_3:8989636-8989655 Msa0276740:intron 35.0%
!! CAGCTTTTGAGAAAATACAG+TGG - chr2_3:8989750-8989769 Msa0276740:CDS 35.0%
AAAAGGAAAGCTTCCAAAAG+AGG - chr2_3:8989815-8989834 Msa0276740:CDS 35.0%
TTAAAGTGGTGCTTACAGAT+GGG + chr2_3:8989890-8989909 None:intergenic 35.0%
! TTTAAAGTGGTGCTTACAGA+TGG + chr2_3:8989891-8989910 None:intergenic 35.0%
GTGGCAAGAGATTAAGAAAA+AGG + chr2_3:8989923-8989942 None:intergenic 35.0%
!! TTGAAAAATCATGGTGGACT+TGG + chr2_3:8990148-8990167 None:intergenic 35.0%
!! GATTTTGATCCAATGACCTT+TGG + chr2_3:8990375-8990394 None:intergenic 35.0%
TTGGATCAAAATCAGACGAT+TGG - chr2_3:8990382-8990401 Msa0276740:CDS 35.0%
! ACCTTTTGATCTTGATCCAA+CGG - chr2_3:8990462-8990481 Msa0276740:CDS 35.0%
ATGTAATAGTGTGGATGACT+TGG + chr2_3:8990814-8990833 None:intergenic 35.0%
AAGTCATCCACACTATTACA+TGG - chr2_3:8990813-8990832 Msa0276740:five_prime_UTR 35.0%
! ATGGTGTTAGATAGATCCAT+GGG + chr2_3:8990862-8990881 None:intergenic 35.0%
! ATAAGCTGCTGGTTATTAGA+CGG - chr2_3:8991083-8991102 Msa0276740:five_prime_UTR 35.0%
GAAGGTTGAGTTACAGAAGA+AGG + chr2_3:8984773-8984792 None:intergenic 40.0%
ATGAAGAGAGAGAGAGATGA+AGG + chr2_3:8984791-8984810 None:intergenic 40.0%
TTTCCAAAGGAAATCTGTGC+AGG - chr2_3:8984956-8984975 Msa0276740:three_prime_UTR 40.0%
! TTTTTACCATAAAACCCGGG+CGG - chr2_3:8985110-8985129 Msa0276740:CDS 40.0%
ATCTGACCTAGAAGGCAAAA+AGG - chr2_3:8985218-8985237 Msa0276740:intron 40.0%
TCTGACCTAGAAGGCAAAAA+GGG - chr2_3:8985219-8985238 Msa0276740:intron 40.0%
!! TCAATGGAGGGTAGTTCTAA+TGG - chr2_3:8985288-8985307 Msa0276740:intron 40.0%
!!! TCTTATGTGATGGGTGCTTT+TGG - chr2_3:8985324-8985343 Msa0276740:intron 40.0%
!! CTTTTGGAGAAAACAGTGGT+GGG - chr2_3:8985340-8985359 Msa0276740:intron 40.0%
!! AAAGGCATCATCATCATTGG+AGG + chr2_3:8985372-8985391 None:intergenic 40.0%
!!! CTAAACCAGGAGTGTTTTGA+TGG + chr2_3:8985569-8985588 None:intergenic 40.0%
CATCAAAACACTCCTGGTTT+AGG - chr2_3:8985567-8985586 Msa0276740:intron 40.0%
ATGGACAACATCAACAACCA+TGG - chr2_3:8985600-8985619 Msa0276740:intron 40.0%
AGCCTACATCAACTGTCAAA+AGG - chr2_3:8985698-8985717 Msa0276740:intron 40.0%
!! GACCTTTTGACAGTTGATGT+AGG + chr2_3:8985703-8985722 None:intergenic 40.0%
! CATAGCTTCCTTTAAGGGTT+TGG + chr2_3:8986162-8986181 None:intergenic 40.0%
TATCCATGCATGTCTGTGTT+TGG - chr2_3:8986362-8986381 Msa0276740:intron 40.0%
!! TGCCCTAAGAGCATTGTTTA+AGG - chr2_3:8986456-8986475 Msa0276740:intron 40.0%
ATAACCGTACAATGCCCTTA+GGG - chr2_3:8986534-8986553 Msa0276740:intron 40.0%
AATGCTAACAAGTGCCCTAA+GGG + chr2_3:8986551-8986570 None:intergenic 40.0%
AAATGCTAACAAGTGCCCTA+AGG + chr2_3:8986552-8986571 None:intergenic 40.0%
GTTTCTGTGACCTCATCAAA+AGG + chr2_3:8986970-8986989 None:intergenic 40.0%
CAGAAACTCTCAGATTTCAC+TGG - chr2_3:8986983-8987002 Msa0276740:intron 40.0%
! TTCCGAAGTCCTCCAAATTT+TGG + chr2_3:8987065-8987084 None:intergenic 40.0%
! GAAGATTGGTGGGTGAATTT+AGG - chr2_3:8987088-8987107 Msa0276740:intron 40.0%
ATAGTAGAGTAGCTCCAAAG+AGG - chr2_3:8987223-8987242 Msa0276740:intron 40.0%
! AGAGGTAAAGTACTTTCCTG+GGG - chr2_3:8987241-8987260 Msa0276740:intron 40.0%
CATAGGGAGTAGTGTTTACA+CGG + chr2_3:8987458-8987477 None:intergenic 40.0%
TAAACACTACTCCCTATGGA+TGG - chr2_3:8987460-8987479 Msa0276740:intron 40.0%
! TCTTTTGGCCCATACATAGT+TGG + chr2_3:8987885-8987904 None:intergenic 40.0%
ACCCGAAAACCTTACAAACT+TGG + chr2_3:8988192-8988211 None:intergenic 40.0%
GATGCAGAAATCAAAACCAG+TGG + chr2_3:8988422-8988441 None:intergenic 40.0%
TGGTGAAGTATACATTCACG+AGG - chr2_3:8988503-8988522 Msa0276740:intron 40.0%
CAAGGGCAAGCTAATTACAA+GGG - chr2_3:8988970-8988989 Msa0276740:intron 40.0%
AAGGGCAAGCTAATTACAAG+GGG - chr2_3:8988971-8988990 Msa0276740:intron 40.0%
! GCAATAGCCTTTTCTTTGAG+TGG + chr2_3:8989055-8989074 None:intergenic 40.0%
!! ACTTGGAAGGTATTTCATGG+AGG + chr2_3:8989077-8989096 None:intergenic 40.0%
TTGGCATTCAGTTACTTGGA+AGG + chr2_3:8989090-8989109 None:intergenic 40.0%
GAGAGGGATTGTCACTAATT+TGG + chr2_3:8989109-8989128 None:intergenic 40.0%
!! TGGTTAGGATTTTTGGACCA+TGG + chr2_3:8989162-8989181 None:intergenic 40.0%
CACATGAATAGAAGGCAAGT+TGG + chr2_3:8989301-8989320 None:intergenic 40.0%
CCGGTAGCAATTATTGTTGT+TGG - chr2_3:8989413-8989432 Msa0276740:intron 40.0%
TGCAAATCGGATTGAAGAGT+AGG - chr2_3:8989498-8989517 Msa0276740:intron 40.0%
AGCAGAAGACAGGGAATTAA+AGG - chr2_3:8989725-8989744 Msa0276740:CDS 40.0%
GCAGAAGACAGGGAATTAAA+GGG - chr2_3:8989726-8989745 Msa0276740:CDS 40.0%
! AATTGTTGCCTTGCCTCTTT+TGG + chr2_3:8989831-8989850 None:intergenic 40.0%
CAAGGCAACAATTGCTTGAA+TGG - chr2_3:8989838-8989857 Msa0276740:CDS 40.0%
CATAGGCAATCACCTAGTTA+CGG - chr2_3:8989977-8989996 Msa0276740:intron 40.0%
TGACAACTCATGTTTCGACT+TGG - chr2_3:8990025-8990044 Msa0276740:intron 40.0%
TAGCGTGACTTGAAAAACCA+TGG + chr2_3:8990194-8990213 None:intergenic 40.0%
ACCGTTGGATCAAGATCAAA+AGG + chr2_3:8990466-8990485 None:intergenic 40.0%
TGATCCAACGGTCAATAATG+TGG - chr2_3:8990474-8990493 Msa0276740:CDS 40.0%
TTGACCACATTATTGACCGT+TGG + chr2_3:8990481-8990500 None:intergenic 40.0%
ATAACAGGAATCACAGAAGC+TGG - chr2_3:8990678-8990697 Msa0276740:five_prime_UTR 40.0%
TCTCAGCAATTCATATCCCA+TGG - chr2_3:8990843-8990862 Msa0276740:five_prime_UTR 40.0%
! CATGGTGTTAGATAGATCCA+TGG + chr2_3:8990863-8990882 None:intergenic 40.0%
CCATGCTCTAGTTATTACCT+CGG - chr2_3:8990878-8990897 Msa0276740:five_prime_UTR 40.0%
! GCTTGTGGTGTTAAAAGTCT+TGG - chr2_3:8990906-8990925 Msa0276740:five_prime_UTR 40.0%
TAACCCTACGTTACGTTGTA+AGG - chr2_3:8990936-8990955 Msa0276740:five_prime_UTR 40.0%
ATGCCTTACAACGTAACGTA+GGG + chr2_3:8990942-8990961 None:intergenic 40.0%
AATGCCTTACAACGTAACGT+AGG + chr2_3:8990943-8990962 None:intergenic 40.0%
ATAACCAGCAGCTTATTTCC+TGG + chr2_3:8991079-8991098 None:intergenic 40.0%
! ACAGAAGAAGGGTTAGTGTG+AGG + chr2_3:8984761-8984780 None:intergenic 45.0%
CTCTTTGTCTCTCTAGCTAG+TGG + chr2_3:8984867-8984886 None:intergenic 45.0%
AAGCCTGCACAGATTTCCTT+TGG + chr2_3:8984962-8984981 None:intergenic 45.0%
! TTTTACCATAAAACCCGGGC+GGG - chr2_3:8985111-8985130 Msa0276740:CDS 45.0%
!! GGTGCTTTTGGAGAAAACAG+TGG - chr2_3:8985336-8985355 Msa0276740:intron 45.0%
!! GCTTTTGGAGAAAACAGTGG+TGG - chr2_3:8985339-8985358 Msa0276740:intron 45.0%
TAGTGGAATTAGGGATGGGA+AGG + chr2_3:8985482-8985501 None:intergenic 45.0%
AAGAGGAAGAAGAGCTTCCA+TGG + chr2_3:8985620-8985639 None:intergenic 45.0%
TGATGTAGGCTTCCAAGAGA+CGG + chr2_3:8985689-8985708 None:intergenic 45.0%
ATGTGCAACTGCAGTGAGAA+TGG - chr2_3:8986034-8986053 Msa0276740:CDS 45.0%
TGTGCAACTGCAGTGAGAAT+GGG - chr2_3:8986035-8986054 Msa0276740:CDS 45.0%
! GCAGTTGGATCAGGTTGTTT+AGG - chr2_3:8986065-8986084 Msa0276740:CDS 45.0%
!! TCCAGCTCTAGATCAGTTCA+TGG - chr2_3:8986094-8986113 Msa0276740:CDS 45.0%
! TCCATGAACTGATCTAGAGC+TGG + chr2_3:8986098-8986117 None:intergenic 45.0%
CTTCCAAACACAGACATGCA+TGG + chr2_3:8986368-8986387 None:intergenic 45.0%
CATAACCGTACAATGCCCTT+AGG - chr2_3:8986533-8986552 Msa0276740:intron 45.0%
!! CATTGGTGTTGGTGCATTGA+AGG - chr2_3:8986817-8986836 Msa0276740:intron 45.0%
AATTTGGAGGACTTCGGAAC+AGG - chr2_3:8987066-8987085 Msa0276740:intron 45.0%
TTCGGAACAGGAAGATTGGT+GGG - chr2_3:8987078-8987097 Msa0276740:intron 45.0%
ACCTCGCAATTACCACTTCT+GGG + chr2_3:8987160-8987179 None:intergenic 45.0%
TACCTCGCAATTACCACTTC+TGG + chr2_3:8987161-8987180 None:intergenic 45.0%
CGTGTAAACACTACTCCCTA+TGG - chr2_3:8987456-8987475 Msa0276740:intron 45.0%
TTCTGCATCTAGGCTTGACT+AGG - chr2_3:8988433-8988452 Msa0276740:intron 45.0%
TCTGCATCTAGGCTTGACTA+GGG - chr2_3:8988434-8988453 Msa0276740:intron 45.0%
ACTAGGGTCTCTTGTGTGTA+TGG - chr2_3:8988450-8988469 Msa0276740:intron 45.0%
GCATGGAGCCTTGGAAATAA+TGG - chr2_3:8988597-8988616 Msa0276740:intron 45.0%
GTGTAGATAATGTGCCTTCC+CGG - chr2_3:8988622-8988641 Msa0276740:intron 45.0%
AGGTGCATAGGATAAAGAGC+CGG + chr2_3:8988644-8988663 None:intergenic 45.0%
AGCTTGCCCTTGGTTGTATA+TGG + chr2_3:8988962-8988981 None:intergenic 45.0%
!! CCTTGTAATTAGCTTGCCCT+TGG + chr2_3:8988972-8988991 None:intergenic 45.0%
CCAAGGGCAAGCTAATTACA+AGG - chr2_3:8988969-8988988 Msa0276740:intron 45.0%
! TTTGTATATATGGGGGCGCA+AGG + chr2_3:8989136-8989155 None:intergenic 45.0%
TCGGATTGAAGAGTAGGTCT+TGG - chr2_3:8989504-8989523 Msa0276740:intron 45.0%
CGGATTGAAGAGTAGGTCTT+GGG - chr2_3:8989505-8989524 Msa0276740:intron 45.0%
TGATCAGCTTGTAGTGAAGG+TGG - chr2_3:8989639-8989658 Msa0276740:intron 45.0%
CTTGTAGTGAAGGTGGAGAT+AGG - chr2_3:8989646-8989665 Msa0276740:intron 45.0%
AGTGAAGGTGGAGATAGGAA+TGG - chr2_3:8989651-8989670 Msa0276740:intron 45.0%
TAGATCCTCAAGCAGAAGAC+AGG - chr2_3:8989715-8989734 Msa0276740:CDS 45.0%
AGATCCTCAAGCAGAAGACA+GGG - chr2_3:8989716-8989735 Msa0276740:CDS 45.0%
AATTCCCTGTCTTCTGCTTG+AGG + chr2_3:8989723-8989742 None:intergenic 45.0%
GAAAGCTTCCAAAAGAGGCA+AGG - chr2_3:8989820-8989839 Msa0276740:CDS 45.0%
GGCAACAATTGCTTGAATGG+TGG - chr2_3:8989841-8989860 Msa0276740:CDS 45.0%
!! GTTTCGACTTGGTGCATGTT+TGG - chr2_3:8990036-8990055 Msa0276740:intron 45.0%
AAAGTCACGTTGAACCACCA+TGG - chr2_3:8990174-8990193 Msa0276740:intron 45.0%
CGTGACTTGAAAAACCATGG+TGG + chr2_3:8990191-8990210 None:intergenic 45.0%
TGATCCAATGACCTTTGGTG+TGG + chr2_3:8990370-8990389 None:intergenic 45.0%
TCAATCAAAGGAAACGGCAC+TGG - chr2_3:8990752-8990771 Msa0276740:five_prime_UTR 45.0%
ACAAACTGCATGTCCTCTGA+AGG + chr2_3:8990781-8990800 None:intergenic 45.0%
TTCAGAGGACATGCAGTTTG+TGG - chr2_3:8990780-8990799 Msa0276740:five_prime_UTR 45.0%
CCGAGGTAATAACTAGAGCA+TGG + chr2_3:8990881-8990900 None:intergenic 45.0%
ATAGCCAGGAAATAAGCTGC+TGG - chr2_3:8991072-8991091 Msa0276740:five_prime_UTR 45.0%
!! TTTGATTATTAATTAATTAA+AGG - chr2_3:8986419-8986438 Msa0276740:intron 5.0%
!! TTGATTATTAATTAATTAAA+GGG - chr2_3:8986420-8986439 Msa0276740:intron 5.0%
! GAAGGGTTAGTGTGAGGCAT+TGG + chr2_3:8984755-8984774 None:intergenic 50.0%
GTGAGGATGAGCCATGATCT+TGG + chr2_3:8985661-8985680 None:intergenic 50.0%
TCCTCACTATCACCGTCTCT+TGG - chr2_3:8985674-8985693 Msa0276740:intron 50.0%
! TCCAAGAGACGGTGATAGTG+AGG + chr2_3:8985678-8985697 None:intergenic 50.0%
AACCTTGCCACCACTTCACT+TGG + chr2_3:8986005-8986024 None:intergenic 50.0%
AGAATGGGTGGAGATGCAGT+TGG - chr2_3:8986050-8986069 Msa0276740:CDS 50.0%
!! AGTGCCCTAAGGGCATTGTA+CGG + chr2_3:8986541-8986560 None:intergenic 50.0%
!! GCATGAGTTAAGGGCACCTT+TGG + chr2_3:8986743-8986762 None:intergenic 50.0%
GGACTTCGGAACAGGAAGAT+TGG - chr2_3:8987074-8987093 Msa0276740:intron 50.0%
CTTCGGAACAGGAAGATTGG+TGG - chr2_3:8987077-8987096 Msa0276740:intron 50.0%
TCTGCACTTGTTCCCAGAAG+TGG - chr2_3:8987145-8987164 Msa0276740:intron 50.0%
TCCCAGAAGTGGTAATTGCG+AGG - chr2_3:8987156-8987175 Msa0276740:intron 50.0%
GGTTTAGATGCATGGAGCCT+TGG - chr2_3:8988588-8988607 Msa0276740:intron 50.0%
CATAGGATAAAGAGCCGGGA+AGG + chr2_3:8988639-8988658 None:intergenic 50.0%
GGTGCATAGGATAAAGAGCC+GGG + chr2_3:8988643-8988662 None:intergenic 50.0%
GGTGGAGCAGACATTACAAG+TGG - chr2_3:8989859-8989878 Msa0276740:CDS 50.0%
GTGGTGCTTACAGATGGGTA+AGG + chr2_3:8989885-8989904 None:intergenic 50.0%
! TTTGGTGTGGTGTGACTGCA+CGG + chr2_3:8990357-8990376 None:intergenic 50.0%
CACACCACACCAAAGGTCAT+TGG - chr2_3:8990363-8990382 Msa0276740:CDS 50.0%
GGACATGCAGTTTGTGGTGA+TGG - chr2_3:8990786-8990805 Msa0276740:five_prime_UTR 50.0%
!! ATTACCTCGGTGCTTGCTTG+TGG - chr2_3:8990891-8990910 Msa0276740:five_prime_UTR 50.0%
AGAAGCAGTAGAGTGCACGC+GGG + chr2_3:8984816-8984835 None:intergenic 55.0%
GAGAAGCAGTAGAGTGCACG+CGG + chr2_3:8984817-8984836 None:intergenic 55.0%
! GGTTGGAGCACCAAGTGAAG+TGG - chr2_3:8985992-8986011 Msa0276740:intron 55.0%
! TGGAGCACCAAGTGAAGTGG+TGG - chr2_3:8985995-8986014 Msa0276740:intron 55.0%
CACCAAGTGAAGTGGTGGCA+AGG - chr2_3:8986000-8986019 Msa0276740:intron 55.0%
GCAACTGCAGTGAGAATGGG+TGG - chr2_3:8986038-8986057 Msa0276740:CDS 55.0%
GGTGGAGATGCAGTTGGATC+AGG - chr2_3:8986056-8986075 Msa0276740:CDS 55.0%
TCCTGGGGACAAGTGCATAG+TGG - chr2_3:8987256-8987275 Msa0276740:intron 55.0%
TCCACTATGCACTTGTCCCC+AGG + chr2_3:8987260-8987279 None:intergenic 55.0%
GTGCAGTCACACCACACCAA+AGG - chr2_3:8990356-8990375 Msa0276740:CDS 55.0%
!! CTGGCTCTAGCAGAGTCAAC+AGG - chr2_3:8990697-8990716 Msa0276740:five_prime_UTR 55.0%
! AACACCACAAGCAAGCACCG+AGG + chr2_3:8990898-8990917 None:intergenic 55.0%
GAAGCAGTAGAGTGCACGCG+GGG + chr2_3:8984815-8984834 None:intergenic 60.0%
! GGGGGCGCAAGGAAAAGAGA+GGG + chr2_3:8989125-8989144 None:intergenic 60.0%
! TGGGGGCGCAAGGAAAAGAG+AGG + chr2_3:8989126-8989145 None:intergenic 60.0%
! ACGGCACTGGAAGCCTTCAG+AGG - chr2_3:8990765-8990784 Msa0276740:five_prime_UTR 60.0%
! GGTCACCCGCCCGGGTTTTA+TGG + chr2_3:8985119-8985138 None:intergenic 65.0%
TCACACAAGGGTCACCCGCC+CGG + chr2_3:8985128-8985147 None:intergenic 65.0%
CACACAAGGGTCACCCGCCC+GGG + chr2_3:8985127-8985146 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 8984750 8991155 8984750 ID=Msa0276740;Name=Msa0276740
chr2_3 mRNA 8984750 8991155 8984750 ID=Msa0276740-mRNA-1;Parent=Msa0276740;Name=Msa0276740-mRNA-1;_AED=0.12;_eAED=0.12;_QI=541|1|1|1|1|1|4|267|378
chr2_3 exon 8984750 8985220 8984750 ID=Msa0276740-mRNA-1:exon:4163;Parent=Msa0276740-mRNA-1
chr2_3 exon 8986012 8986259 8986012 ID=Msa0276740-mRNA-1:exon:4162;Parent=Msa0276740-mRNA-1
chr2_3 exon 8989657 8989912 8989657 ID=Msa0276740-mRNA-1:exon:4161;Parent=Msa0276740-mRNA-1
chr2_3 exon 8990186 8991155 8990186 ID=Msa0276740-mRNA-1:exon:4160;Parent=Msa0276740-mRNA-1
chr2_3 five_prime_UTR 8990615 8991155 8990615 ID=Msa0276740-mRNA-1:five_prime_utr;Parent=Msa0276740-mRNA-1
chr2_3 CDS 8990186 8990614 8990186 ID=Msa0276740-mRNA-1:cds;Parent=Msa0276740-mRNA-1
chr2_3 CDS 8989657 8989912 8989657 ID=Msa0276740-mRNA-1:cds;Parent=Msa0276740-mRNA-1
chr2_3 CDS 8986012 8986259 8986012 ID=Msa0276740-mRNA-1:cds;Parent=Msa0276740-mRNA-1
chr2_3 CDS 8985017 8985220 8985017 ID=Msa0276740-mRNA-1:cds;Parent=Msa0276740-mRNA-1
chr2_3 three_prime_UTR 8984750 8985016 8984750 ID=Msa0276740-mRNA-1:three_prime_utr;Parent=Msa0276740-mRNA-1
Gene Sequence

>Msa0276740

ATGGAGGGTAGTTCTAATGGAAGTTCTTCTTATTCTTATGTGATGGGTGCTTTTGGAGAAAACAGTGGTGGGCTATGTCCTCCAATGATGATGATGCCTTTAGTCACTTCATCTCATCATAATGCTCATCATCCAATAAATTCCAATAACCACAACAATACTAATGCAAACAACATAAGCGGTCTTTTCCTTCCCATCCCTAATTCCACTAACAATAATAACAATCACTACACCAACTGTAATAACAACACCTCTTCTATCATGCTTCAAAATAACCATCAAAACACTCCTGGTTTAGGTTACTATTTCATGGACAACATCAACAACCATGGAAGCTCTTCTTCCTCTTCTTCTTCTTCTGTCAAATCCAAGATCATGGCTCATCCTCACTATCACCGTCTCTTGGAAGCCTACATCAACTGTCAAAAGGTTGGAGCACCAAGTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCAACTGCAGTGAGAATGGGTGGAGATGCAGTTGGATCAGGTTGTTTAGGTGAAGATCCAGCTCTAGATCAGTTCATGGAAGCTTACTGTGAGATGCTTATCAAGTATGAGCAAGAACTTTCCAAACCCTTAAAGGAAGCTATGCTTTTTCTTCAAAGGATTGAAGTCCAGTTCAAAAATCTTACAGTTTCTTCTTCTTCAGATAATATTGCTTGTAGTGAAGGTGGAGATAGGAATGGATCATCTGAAGAAGATCATGTTGATATGTACAACAACATGATAGATCCTCAAGCAGAAGACAGGGAATTAAAGGGTCAGCTTTTGAGAAAATACAGTGGATACTTAGGCAGTCTGAAGCAAGAGTTTATGAAGAAAAGGAAAAAAGGAAAGCTTCCAAAAGAGGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAGTGGCCTTACCCATCTGAATCACAGAAGCTGGCTCTAGCAGAGTCAACAGGTCTTGATCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAGTCATCCACACTATTACATGGATAATGTTCTCAGCAATTCATATCCCATGGATCTATCTAACACCATGCTCTAG
Protein sequence

>Msa0276740

MEGSSNGSSSYSYVMGAFGENSGGLCPPMMMMPLVTSSHHNAHHPINSNNHNNTNANNISGLFLPIPNSTNNNNNHYTNCNNNTSSIMLQNNHQNTPGLGYYFMDNINNHGSSSSSSSSSVKSKIMAHPHYHRLLEAYINCQKVGAPSEVVARLEEACATAVRMGGDAVGSGCLGEDPALDQFMEAYCEMLIKYEQELSKPLKEAMLFLQRIEVQFKNLTVSSSSDNIACSEGGDRNGSSEEDHVDMYNNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNVLSNSYPMDLSNTML*