AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0197100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197100 MtrunA17_Chr2g0289201 97.619 378 5 3 1 378 1 374 0.0 761
Msa0197100 MtrunA17_Chr5g0439391 64.259 263 79 4 121 378 46 298 4.12e-103 306
Msa0197100 MtrunA17_Chr1g0151961 58.039 255 93 3 118 362 116 366 5.51e-90 275
Msa0197100 MtrunA17_Chr5g0413201 53.878 245 111 1 111 353 62 306 3.47e-83 256
Msa0197100 MtrunA17_Chr1g0192791 49.402 251 107 5 116 353 14 257 5.22e-67 213
Msa0197100 MtrunA17_Chr1g0149651 31.890 254 132 6 122 341 174 420 6.83e-37 138
Msa0197100 MtrunA17_Chr2g0305101 30.739 257 149 6 112 341 85 339 4.50e-36 135
Msa0197100 MtrunA17_Chr3g0137241 31.600 250 140 6 122 341 107 355 2.93e-35 132
Msa0197100 MtrunA17_Chr4g0065241 30.576 278 167 6 90 341 38 315 6.21e-35 131
Msa0197100 MtrunA17_Chr5g0398181 28.516 256 142 5 121 341 27 276 1.61e-29 115
Msa0197100 MtrunA17_Chr4g0008591 42.667 75 43 0 269 343 347 421 2.34e-12 68.6
Msa0197100 MtrunA17_Chr3g0141941 39.535 86 46 2 258 343 327 406 5.43e-12 67.0
Msa0197100 MtrunA17_Chr7g0240371 48.333 60 31 0 284 343 307 366 5.99e-12 67.0
Msa0197100 MtrunA17_Chr1g0155681 39.535 86 46 2 258 343 338 417 9.41e-12 66.6
Msa0197100 MtrunA17_Chr8g0373801 39.560 91 50 3 260 347 554 642 1.12e-11 66.6
Msa0197100 MtrunA17_Chr3g0141931 42.254 71 41 0 273 343 339 409 1.83e-11 65.5
Msa0197100 MtrunA17_Chr4g0025521 46.667 60 32 0 284 343 404 463 2.06e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197100 AT1G62360.1 79.087 263 49 5 121 378 121 382 1.50e-132 384
Msa0197100 AT4G08150.1 52.427 309 125 5 68 362 85 385 1.59e-90 278
Msa0197100 AT1G23380.1 49.609 256 109 3 117 362 81 326 1.35e-80 250
Msa0197100 AT1G70510.1 50.410 244 121 0 117 360 65 308 3.28e-80 248
Msa0197100 AT1G23380.2 49.225 258 109 4 117 362 81 328 1.18e-78 245
Msa0197100 AT1G70510.2 49.597 248 121 1 117 360 65 312 6.44e-78 243
Msa0197100 AT4G32040.2 27.424 361 220 6 21 341 4 362 2.73e-42 152
Msa0197100 AT4G32040.1 27.424 361 220 6 21 341 4 362 3.93e-42 152
Msa0197100 AT5G25220.2 32.245 245 140 5 122 341 160 403 4.53e-40 147
Msa0197100 AT5G25220.1 32.245 245 140 5 122 341 160 403 4.62e-40 147
Msa0197100 AT5G11060.1 31.020 245 143 6 122 341 124 367 8.93e-36 135
Msa0197100 AT1G62990.1 30.924 249 142 6 121 341 29 275 1.36e-31 121
Msa0197100 AT1G75430.1 49.091 55 28 0 289 343 209 263 2.37e-11 64.3
Msa0197100 AT5G02030.1 46.667 60 32 0 284 343 350 409 2.96e-11 65.5
Msa0197100 AT1G19700.1 46.667 60 32 0 284 343 353 412 4.26e-11 64.7
Msa0197100 AT1G19700.3 46.667 60 32 0 284 343 353 412 4.26e-11 64.7
Msa0197100 AT1G19700.5 46.667 60 32 0 284 343 353 412 4.26e-11 64.7
Msa0197100 AT1G19700.4 46.667 60 32 0 284 343 353 412 4.26e-11 64.7
Msa0197100 AT1G19700.2 46.667 60 32 0 284 343 353 412 4.26e-11 64.7
Msa0197100 AT4G36870.2 39.024 82 46 2 264 343 480 559 7.84e-11 64.3
Msa0197100 AT4G36870.1 39.024 82 46 2 264 343 480 559 7.84e-11 64.3
Msa0197100 AT2G27220.1 45.000 60 33 0 284 343 230 289 9.52e-11 63.5
Msa0197100 AT2G27220.3 45.000 60 33 0 284 343 230 289 9.52e-11 63.5

Find 114 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTATTGTTAGTGGAATT+AGG 0.210507 2_1:+14745294 None:intergenic
AGAACTTTCCAAACCCTTAA+AGG 0.230018 2_1:-14744631 Msa0197100:CDS
ATTAGTATTGTTGTGGTTAT+TGG 0.247015 2_1:+14745350 None:intergenic
TCTTATGTGATGGGTGCTTT+TGG 0.272814 2_1:-14745459 Msa0197100:CDS
AGCAGAAGACAGGGAATTAA+AGG 0.275275 2_1:-14741053 Msa0197100:CDS
CATAGCTTCCTTTAAGGGTT+TGG 0.275443 2_1:+14744623 None:intergenic
AATTGTTGCCTTGCCTCTTT+TGG 0.282916 2_1:+14740950 None:intergenic
TTGTGGTTATTGGAATTTAT+TGG 0.285636 2_1:+14745360 None:intergenic
TGGTTTAGGTTACTATTTCA+TGG 0.291622 2_1:-14745202 Msa0197100:CDS
CATCAAAACACTCCTGGTTT+AGG 0.312805 2_1:-14745216 Msa0197100:CDS
AAAAGCATAGCTTCCTTTAA+GGG 0.321776 2_1:+14744618 None:intergenic
TCTTCTTCTTCAGATAATAT+TGG 0.323037 2_1:-14744555 Msa0197100:intron
TATTATTGTTAGTGGAATTA+GGG 0.324374 2_1:+14745295 None:intergenic
ATCTGACCTAGAAGGCAAAA+AGG 0.361937 2_1:-14745565 Msa0197100:five_prime_UTR
TAACCCTACGTTACGTTGTA+AGG 0.362683 2_1:-14739843 Msa0197100:three_prime_UTR
AAGCCTGCACAGATTTCCTT+TGG 0.372354 2_1:+14745824 None:intergenic
TTCTTCTTATTCTTATGTGA+TGG 0.373753 2_1:-14745469 Msa0197100:CDS
GCAGTTGGATCAGGTTGTTT+AGG 0.376419 2_1:-14744717 Msa0197100:CDS
GTGATTGTTATTATTGTTAG+TGG 0.377361 2_1:+14745287 None:intergenic
TCAATGGAGGGTAGTTCTAA+TGG 0.389732 2_1:-14745495 Msa0197100:CDS
ATAACCAGCAGCTTATTTCC+TGG 0.397368 2_1:+14739703 None:intergenic
GAAGGTTGAGTTACAGAAGA+AGG 0.409072 2_1:+14746016 None:intergenic
ATCAGAAGCAAATAAACAAC+TGG 0.411205 2_1:-14740054 Msa0197100:CDS
TCTTCTTATTCTTATGTGAT+GGG 0.426756 2_1:-14745468 Msa0197100:CDS
CAAGGCAACAATTGCTTGAA+TGG 0.428670 2_1:-14740940 Msa0197100:CDS
GCTTGTGGTCTTAAAAGTCT+TGG 0.432344 2_1:-14739873 Msa0197100:three_prime_UTR
AACCTTGCCACCACTTCACT+TGG 0.434594 2_1:+14744780 None:intergenic
CACACAAGGGTCACCCGCCC+GGG 0.436593 2_1:+14745659 None:intergenic
TTCTGTTAAATCCAAGATCA+TGG 0.436672 2_1:-14745136 Msa0197100:CDS
TCCAGCTCTAGATCAGTTCA+TGG 0.439689 2_1:-14744688 Msa0197100:CDS
GTGAGGATGAGCCATGATCT+TGG 0.442354 2_1:+14745125 None:intergenic
AAGAAGAAGAAGAGCTTCCA+TGG 0.445455 2_1:+14745166 None:intergenic
TTTGAATCATTAAAATAGCC+AGG 0.446877 2_1:-14739721 Msa0197100:three_prime_UTR
AATTCCCTGTCTTCTGCTTG+AGG 0.446914 2_1:+14741058 None:intergenic
AGAGGTGTTGTTATTACAGT+TGG 0.455218 2_1:+14745260 None:intergenic
AGCAAGAGTTTATGAAGAAA+AGG 0.455849 2_1:-14740988 Msa0197100:CDS
AGAAAATACAGTGGATACTT+AGG 0.456169 2_1:-14741019 Msa0197100:CDS
TCACACAAGGGTCACCCGCC+CGG 0.458954 2_1:+14745658 None:intergenic
ACTAAAGGCATCATCATCAT+TGG 0.476116 2_1:+14745411 None:intergenic
CTCTTTGTCTCTCTAGCTAG+TGG 0.477469 2_1:+14745922 None:intergenic
TCCTCACTATCACCGTCTCT+TGG 0.481181 2_1:-14745109 Msa0197100:CDS
TTCAGAGGACATGCAGTTTG+TGG 0.481599 2_1:-14739999 Msa0197100:CDS
TATTAGACGGTTCTTTATGA+AGG 0.485627 2_1:-14739683 Msa0197100:three_prime_UTR
GTGAGTGAGTATTAATTCAA+TGG 0.487645 2_1:-14745511 Msa0197100:exon
TAGATCCTCAAGCAGAAGAC+AGG 0.488640 2_1:-14741063 Msa0197100:CDS
CTTGTAGTGAAGGTGGAGAT+AGG 0.494451 2_1:-14741132 Msa0197100:CDS
TTTCCAAAGGAAATCTGTGC+AGG 0.494548 2_1:-14745827 Msa0197100:five_prime_UTR
TCAATCAAAGGAAACGGCAC+TGG 0.497928 2_1:-14740027 Msa0197100:CDS
CTGGCTCTAGCAGAGTCAAC+AGG 0.498247 2_1:-14740082 Msa0197100:CDS
ATGTGCAACTGCAGTGAGAA+TGG 0.501403 2_1:-14744748 Msa0197100:CDS
ATTGTTAGTGGAATTAGGGA+TGG 0.507470 2_1:+14745299 None:intergenic
GGTGGAGATGCAGTTGGATC+AGG 0.509504 2_1:-14744726 Msa0197100:CDS
GAAGGGTTAGTGTGAGGCAT+TGG 0.510312 2_1:+14746034 None:intergenic
AAGGTTGAGTTACAGAAGAA+GGG 0.511993 2_1:+14746017 None:intergenic
GGACATGCAGTTTGTGGTGA+TGG 0.522795 2_1:-14739993 Msa0197100:CDS
GCAGAAGACAGGGAATTAAA+GGG 0.524288 2_1:-14741052 Msa0197100:CDS
AGCCTACATCAACTGTCAAA+AGG 0.527463 2_1:-14745085 Msa0197100:intron
ATTACCTCGGTGCTTGCTTG+TGG 0.529771 2_1:-14739888 Msa0197100:three_prime_UTR
AAAAGGAAAGCTTCCAAAAG+AGG 0.530019 2_1:-14740963 Msa0197100:CDS
TAGTGGAATTAGGGATGGGA+AGG 0.531021 2_1:+14745304 None:intergenic
GGTTTATCAATCAAAGGAAA+CGG 0.544135 2_1:-14740033 Msa0197100:CDS
AGTGAAGGTGGAGATAGGAA+TGG 0.544711 2_1:-14741127 Msa0197100:CDS
ATAACAGGAATCACAGAAGC+TGG 0.544820 2_1:-14740101 Msa0197100:intron
AATAACCATCAAAACACTCC+TGG 0.547863 2_1:-14745222 Msa0197100:CDS
TCCATGAACTGATCTAGAGC+TGG 0.552608 2_1:+14744687 None:intergenic
TACTTCTTCATGTAACTGAC+TGG 0.555243 2_1:-14745765 Msa0197100:five_prime_UTR
TTGTTAGTGGAATTAGGGAT+GGG 0.555961 2_1:+14745300 None:intergenic
ATGTAATAGTGTGGATGACT+TGG 0.557999 2_1:+14739968 None:intergenic
TGTTTGCATTAGTATTGTTG+TGG 0.559213 2_1:+14745343 None:intergenic
AGTGAGTATTAATTCAATGG+AGG 0.559921 2_1:-14745508 Msa0197100:exon
ACAACTGGTTTATCAATCAA+AGG 0.560044 2_1:-14740039 Msa0197100:CDS
CACCAAGTGAAGTGGTGGCA+AGG 0.566973 2_1:-14744782 Msa0197100:CDS
TGATGAGATGAAGTGACTAA+AGG 0.572274 2_1:+14745396 None:intergenic
ATATGATCAGCTTGTAGTGA+AGG 0.580233 2_1:-14741142 Msa0197100:intron
AAAGGCATCATCATCATTGG+AGG 0.581233 2_1:+14745414 None:intergenic
AAGTCATCCACACTATTACA+TGG 0.581325 2_1:-14739966 Msa0197100:CDS
CATGGTGTTAGATAGATCCA+TGG 0.582210 2_1:+14739919 None:intergenic
ATAAGCTGCTGGTTATTAGA+CGG 0.585249 2_1:-14739696 Msa0197100:three_prime_UTR
ATAGCCAGGAAATAAGCTGC+TGG 0.585397 2_1:-14739707 Msa0197100:three_prime_UTR
TACATGAAGAAGTAGTGAAG+AGG 0.589580 2_1:+14745774 None:intergenic
TGTGCAACTGCAGTGAGAAT+GGG 0.589860 2_1:-14744747 Msa0197100:CDS
GGTTGGAGCACCAAGTGAAG+TGG 0.591898 2_1:-14744790 Msa0197100:CDS
TCTCAGCAATTCATATCCCA+TGG 0.592615 2_1:-14739936 Msa0197100:CDS
TCTAGCTAGTGGATAATACA+AGG 0.595066 2_1:+14745933 None:intergenic
ACAAACTGCATGTCCTCTGA+AGG 0.595663 2_1:+14740001 None:intergenic
TGATCAGCTTGTAGTGAAGG+TGG 0.598391 2_1:-14741139 Msa0197100:intron
TGAATTAATACTCACTCACT+TGG 0.600829 2_1:+14745515 None:intergenic
GTGAGTATTAATTCAATGGA+GGG 0.604163 2_1:-14745507 Msa0197100:exon
GGCAACAATTGCTTGAATGG+TGG 0.608396 2_1:-14740937 Msa0197100:CDS
TCCAAGAGACGGTGATAGTG+AGG 0.612274 2_1:+14745108 None:intergenic
ATGCCTTACAACGTAACGTA+GGG 0.613119 2_1:+14739840 None:intergenic
TGGAGCACCAAGTGAAGTGG+TGG 0.614555 2_1:-14744787 Msa0197100:CDS
AGAAGCAGTAGAGTGCACGC+GGG 0.620809 2_1:+14745973 None:intergenic
ACTAATGCAAACAACATAAG+CGG 0.624162 2_1:-14745333 Msa0197100:CDS
GAAAGCTTCCAAAAGAGGCA+AGG 0.624760 2_1:-14740958 Msa0197100:CDS
TGATGTAGGCTTCCAAGAGA+CGG 0.625494 2_1:+14745097 None:intergenic
GAGAAGCAGTAGAGTGCACG+CGG 0.626137 2_1:+14745972 None:intergenic
ACATTATCCATGTAATAGTG+TGG 0.627160 2_1:+14739959 None:intergenic
ATGGACAACATCAACAACCA+TGG 0.630008 2_1:-14745183 Msa0197100:CDS
ACGGCACTGGAAGCCTTCAG+AGG 0.633606 2_1:-14740014 Msa0197100:CDS
GTGGTGCTTACAGATGGGTA+AGG 0.637343 2_1:+14740896 None:intergenic
ATGGTGTTAGATAGATCCAT+GGG 0.639715 2_1:+14739920 None:intergenic
AGATCCTCAAGCAGAAGACA+GGG 0.640900 2_1:-14741062 Msa0197100:CDS
CCATGCTCTAGTTATTACCT+CGG 0.642109 2_1:-14739901 Msa0197100:exon
ATGAAATAGTAACCTAAACC+AGG 0.642596 2_1:+14745204 None:intergenic
CCGAGGTAATAACTAGAGCA+TGG 0.644204 2_1:+14739901 None:intergenic
AATGCCTTACAACGTAACGT+AGG 0.645137 2_1:+14739839 None:intergenic
CATTAAATGCTGAAAATGTG+TGG 0.653186 2_1:-14745870 Msa0197100:five_prime_UTR
ACAGAAGAAGGGTTAGTGTG+AGG 0.653342 2_1:+14746028 None:intergenic
AGAATGGGTGGAGATGCAGT+TGG 0.655702 2_1:-14744732 Msa0197100:CDS
GCAACTGCAGTGAGAATGGG+TGG 0.659150 2_1:-14744744 Msa0197100:CDS
GGTGGAGCAGACATTACAAG+TGG 0.680780 2_1:-14740919 Msa0197100:CDS
GAAGCAGTAGAGTGCACGCG+GGG 0.707059 2_1:+14745974 None:intergenic
AAGACCACAAGCAAGCACCG+AGG 0.779404 2_1:+14739884 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATAAAAAAA+AGG + chr2_1:14744120-14744139 None:intergenic 0.0%
!!! ACTTCAATTTAATTTAATTA+AGG + chr2_1:14741476-14741495 None:intergenic 10.0%
!! ATTCTAATAATTAATAACAA+TGG - chr2_1:14743234-14743253 Msa0197100:intron 10.0%
!! TTTGAATATATGAAAATAAA+AGG + chr2_1:14744466-14744485 None:intergenic 10.0%
!! AAATTTAATTAGAAATATTG+TGG + chr2_1:14744846-14744865 None:intergenic 10.0%
!! TTGTCAATATTAGTAATAAA+TGG + chr2_1:14740761-14740780 None:intergenic 15.0%
!!! TTCATAAATTTTTTACTTCA+TGG - chr2_1:14740858-14740877 Msa0197100:intron 15.0%
!! TAAATAATAACCAATGAATT+AGG - chr2_1:14742015-14742034 Msa0197100:intron 15.0%
!! AAATAATAACCAATGAATTA+GGG - chr2_1:14742016-14742035 Msa0197100:intron 15.0%
!!! AAGTTTTTTTATGTTTTGAA+GGG + chr2_1:14742962-14742981 None:intergenic 15.0%
!! TAAATATAGAAATCTAACAT+TGG + chr2_1:14744150-14744169 None:intergenic 15.0%
!! TACTATAATTTATGAATAAC+AGG - chr2_1:14745566-14745585 Msa0197100:five_prime_UTR 15.0%
!!! TAATACAAGGTTTTTTATGA+AGG + chr2_1:14739739-14739758 None:intergenic 20.0%
!!! TTTTATGGTAAAAAAGTAAC+AGG + chr2_1:14740003-14740022 None:intergenic 20.0%
!! TATTATTGTTAGTGGAATTA+GGG + chr2_1:14740390-14740409 None:intergenic 20.0%
!! TTATTATTGTTAGTGGAATT+AGG + chr2_1:14740391-14740410 None:intergenic 20.0%
!! TTTATCATCTATGCTTAAAA+GGG + chr2_1:14740813-14740832 None:intergenic 20.0%
!!! TACTTCATGGAAATTATTTT+AGG - chr2_1:14740871-14740890 Msa0197100:intron 20.0%
!!! AAAATCTGAATAGTATTTTC+TGG + chr2_1:14741191-14741210 None:intergenic 20.0%
!!! AAGACATTGTTTCTTTTTTT+GGG + chr2_1:14741384-14741403 None:intergenic 20.0%
!! GTAGTACATATATATTTCAT+TGG - chr2_1:14741700-14741719 Msa0197100:intron 20.0%
!!! CTTGATAGTATTGTTTTTAT+GGG - chr2_1:14741795-14741814 Msa0197100:intron 20.0%
!! TTTGTAATGAATCCAAAATT+TGG - chr2_1:14741949-14741968 Msa0197100:intron 20.0%
!! AATAAAATATTCCATCCATA+GGG + chr2_1:14742374-14742393 None:intergenic 20.0%
!! TAATAAAATATTCCATCCAT+AGG + chr2_1:14742375-14742394 None:intergenic 20.0%
!!! TTACTACTATATACTTCTTT+TGG + chr2_1:14742802-14742821 None:intergenic 20.0%
!! AAACATTGAATTGAAAACTT+TGG + chr2_1:14742841-14742860 None:intergenic 20.0%
!! TGATATACTACAAAAATAGA+GGG + chr2_1:14742885-14742904 None:intergenic 20.0%
!! ATGATATACTACAAAAATAG+AGG + chr2_1:14742886-14742905 None:intergenic 20.0%
!!! CAAGTTTTTTTATGTTTTGA+AGG + chr2_1:14742963-14742982 None:intergenic 20.0%
!! AAACATGTATAATTGATAAG+TGG + chr2_1:14742991-14743010 None:intergenic 20.0%
!! CTAAGATAATCTTTCTATAT+AGG + chr2_1:14743052-14743071 None:intergenic 20.0%
!! CTATATAGAAAGATTATCTT+AGG - chr2_1:14743050-14743069 Msa0197100:intron 20.0%
!!! GATCGATTTTCTTTATAAAA+TGG + chr2_1:14743119-14743138 None:intergenic 20.0%
!! ATTACTTCAAACATAATCAA+AGG + chr2_1:14743260-14743279 None:intergenic 20.0%
!! TATTATCATAGGGATAAAAA+TGG + chr2_1:14743296-14743315 None:intergenic 20.0%
!! CAAAATACTTAACTTATGAA+GGG + chr2_1:14743387-14743406 None:intergenic 20.0%
!! TACATAAAAGTAAACCAATA+AGG + chr2_1:14743791-14743810 None:intergenic 20.0%
!!! AATTAAAAATAGGAGTACAA+GGG - chr2_1:14743830-14743849 Msa0197100:intron 20.0%
!! TCCTATAATCAAATATATGT+GGG + chr2_1:14743904-14743923 None:intergenic 20.0%
!! AGGTTAAAATATTAACAATG+TGG + chr2_1:14744100-14744119 None:intergenic 20.0%
!!! ATTTTAATGTTCTGTTTATG+AGG - chr2_1:14744169-14744188 Msa0197100:intron 20.0%
!!! TGACTATAAATTGTTTTTAC+CGG - chr2_1:14744298-14744317 Msa0197100:intron 20.0%
!! GCAAATAATATAACATTAGA+AGG + chr2_1:14744493-14744512 None:intergenic 20.0%
!! TTTATGAAGAAAAGGAAAAA+AGG - chr2_1:14744702-14744721 Msa0197100:CDS 20.0%
!!! AAGGATTCAAATTTTTAAAG+TGG + chr2_1:14744808-14744827 None:intergenic 20.0%
!!! TTTGATTTCTTTCATTTCAT+AGG - chr2_1:14744864-14744883 Msa0197100:intron 20.0%
!! ATTTATTAAAATCCGTAACT+AGG + chr2_1:14744896-14744915 None:intergenic 20.0%
!! TTTGCAAATTTGAAAAATCA+TGG + chr2_1:14745061-14745080 None:intergenic 20.0%
!!! ATTTGAAGACTGATTTTTTA+AGG - chr2_1:14745137-14745156 Msa0197100:CDS 20.0%
!! TCTATATCAAATGTGTAAAT+TGG - chr2_1:14745209-14745228 Msa0197100:CDS 20.0%
!! AATACATGTTTATATGGTTA+GGG + chr2_1:14745450-14745469 None:intergenic 20.0%
!! TTGTACAATACATGTTTATA+TGG + chr2_1:14745456-14745475 None:intergenic 20.0%
!!! GTACAATTTACTTTTTTTGA+AGG - chr2_1:14745470-14745489 Msa0197100:CDS 20.0%
!!! TAAATAGTGATAGTGTTTTG+TGG + chr2_1:14739962-14739981 None:intergenic 25.0%
!!! TACTTTTTTACCATAAAACC+CGG - chr2_1:14740005-14740024 Msa0197100:CDS 25.0%
!!! TTTGTTTTTGTTTCACACAA+GGG + chr2_1:14740039-14740058 None:intergenic 25.0%
!!! TTTTGTTTTTGTTTCACACA+AGG + chr2_1:14740040-14740059 None:intergenic 25.0%
! AGGCAAAAAGGTTAATAAAA+AGG - chr2_1:14740129-14740148 Msa0197100:intron 25.0%
! TTCTTCTTATTCTTATGTGA+TGG - chr2_1:14740213-14740232 Msa0197100:intron 25.0%
! TCTTCTTATTCTTATGTGAT+GGG - chr2_1:14740214-14740233 Msa0197100:intron 25.0%
! TTGTGGTTATTGGAATTTAT+TGG + chr2_1:14740325-14740344 None:intergenic 25.0%
! ATTAGTATTGTTGTGGTTAT+TGG + chr2_1:14740335-14740354 None:intergenic 25.0%
!! GTGATTGTTATTATTGTTAG+TGG + chr2_1:14740398-14740417 None:intergenic 25.0%
!!! CTTTTTTTGTTTGACAAGTT+TGG - chr2_1:14740677-14740696 Msa0197100:intron 25.0%
!!! ATAATTGTACTTTGAAACTG+TGG - chr2_1:14740719-14740738 Msa0197100:intron 25.0%
!!! TAATTGTACTTTGAAACTGT+GGG - chr2_1:14740720-14740739 Msa0197100:intron 25.0%
! CTTTATCATCTATGCTTAAA+AGG + chr2_1:14740814-14740833 None:intergenic 25.0%
!!! TCATGGAAATTATTTTAGGT+TGG - chr2_1:14740875-14740894 Msa0197100:intron 25.0%
!! AAACTGTAAGATTTTTGAAC+TGG + chr2_1:14741108-14741127 None:intergenic 25.0%
! TCTTCTTCTTCAGATAATAT+TGG - chr2_1:14741127-14741146 Msa0197100:CDS 25.0%
!!! CAAGACATTGTTTCTTTTTT+TGG + chr2_1:14741385-14741404 None:intergenic 25.0%
!! TATTTGGAACTCACTTATTT+AGG + chr2_1:14741613-14741632 None:intergenic 25.0%
!! GCATTTTTGTCTGAAAATAA+AGG - chr2_1:14741661-14741680 Msa0197100:intron 25.0%
! CATATATATTTCATTGGTGT+TGG - chr2_1:14741706-14741725 Msa0197100:intron 25.0%
! ATTGAAGGAACTTAACTATA+AGG - chr2_1:14741732-14741751 Msa0197100:intron 25.0%
!!! GCTTGATAGTATTGTTTTTA+TGG - chr2_1:14741794-14741813 Msa0197100:intron 25.0%
!! TTAAAATTTCCCTTTTGATG+AGG - chr2_1:14741856-14741875 Msa0197100:intron 25.0%
! TCACAAGTTTCTTTCTAAAT+TGG - chr2_1:14742085-14742104 Msa0197100:intron 25.0%
!! GTGGATTTTAGATTATGATA+TGG - chr2_1:14742174-14742193 Msa0197100:intron 25.0%
!! AAAAATCTTGCAAAGTTGAT+TGG - chr2_1:14742212-14742231 Msa0197100:intron 25.0%
!!! CATAGCTTAATCTCTTTTTT+AGG + chr2_1:14742251-14742270 None:intergenic 25.0%
! TAAACTCACCATTATTCTTA+AGG + chr2_1:14742288-14742307 None:intergenic 25.0%
! TGCTTGTCTTTAACTAAAAA+TGG - chr2_1:14742545-14742564 Msa0197100:intron 25.0%
!! TTTTCTATGATGTTCATTGT+TGG - chr2_1:14742590-14742609 Msa0197100:intron 25.0%
! GATATACTACAAAAATAGAG+GGG + chr2_1:14742884-14742903 None:intergenic 25.0%
!! AGAAAGATTATCTTAGGTTT+TGG - chr2_1:14743056-14743075 Msa0197100:intron 25.0%
! TAACTAAATCCAAGTTTGTA+AGG - chr2_1:14743082-14743101 Msa0197100:intron 25.0%
! AAATGCATAGCTTAACTAAA+TGG + chr2_1:14743163-14743182 None:intergenic 25.0%
!! TTAAGCTATGCATTTTTCTT+CGG - chr2_1:14743168-14743187 Msa0197100:intron 25.0%
! AGTGGAAATCTATTATCATA+GGG + chr2_1:14743306-14743325 None:intergenic 25.0%
! CCAAAATACTTAACTTATGA+AGG + chr2_1:14743388-14743407 None:intergenic 25.0%
!! CCTTCATAAGTTAAGTATTT+TGG - chr2_1:14743385-14743404 Msa0197100:intron 25.0%
!! TTTAACTTTGTCTTCTTTGA+AGG - chr2_1:14743444-14743463 Msa0197100:intron 25.0%
!! AAGCTACTAAATTATTGGTT+AGG + chr2_1:14743679-14743698 None:intergenic 25.0%
! AAGCTAAGCTACTAAATTAT+TGG + chr2_1:14743684-14743703 None:intergenic 25.0%
! AATAATTTAGTAGCTTAGCT+TGG - chr2_1:14743683-14743702 Msa0197100:intron 25.0%
!! ACTATGTTTGTTAACCTTAT+TGG - chr2_1:14743774-14743793 Msa0197100:intron 25.0%
! GAAGAGTTCCAATTAAAAAT+AGG - chr2_1:14743820-14743839 Msa0197100:intron 25.0%
!!! CTTGTACTCCTATTTTTAAT+TGG + chr2_1:14743831-14743850 None:intergenic 25.0%
!! CAATTAAAAATAGGAGTACA+AGG - chr2_1:14743829-14743848 Msa0197100:intron 25.0%
!! ATTAAAAATAGGAGTACAAG+GGG - chr2_1:14743831-14743850 Msa0197100:intron 25.0%
! TATAATCAAATATATGTGGG+GGG + chr2_1:14743901-14743920 None:intergenic 25.0%
! CTATAATCAAATATATGTGG+GGG + chr2_1:14743902-14743921 None:intergenic 25.0%
! CCTATAATCAAATATATGTG+GGG + chr2_1:14743903-14743922 None:intergenic 25.0%
! GTCCTATAATCAAATATATG+TGG + chr2_1:14743905-14743924 None:intergenic 25.0%
! ATATTTGATTATAGGACCTA+AGG - chr2_1:14743908-14743927 Msa0197100:intron 25.0%
! ATGGATATTTGTATATATGG+GGG + chr2_1:14744045-14744064 None:intergenic 25.0%
! CATGGATATTTGTATATATG+GGG + chr2_1:14744046-14744065 None:intergenic 25.0%
! CCATGGATATTTGTATATAT+GGG + chr2_1:14744047-14744066 None:intergenic 25.0%
! ACCATGGATATTTGTATATA+TGG + chr2_1:14744048-14744067 None:intergenic 25.0%
!! ATCAAAATGGTTAGGATTTT+TGG + chr2_1:14744071-14744090 None:intergenic 25.0%
! ATTACTTACACATGAATAGA+AGG + chr2_1:14744213-14744232 None:intergenic 25.0%
! AAATGTCATAACATAGAACT+TGG - chr2_1:14744368-14744387 Msa0197100:intron 25.0%
! TCAAATACTAAATGCATGTT+CGG + chr2_1:14745123-14745142 None:intergenic 25.0%
!! AGTTGTTTGCATTAATTTGA+AGG - chr2_1:14745170-14745189 Msa0197100:CDS 25.0%
! TCAAATGTGTAAATTGGATT+TGG - chr2_1:14745215-14745234 Msa0197100:CDS 25.0%
! CAAATGTGTAAATTGGATTT+GGG - chr2_1:14745216-14745235 Msa0197100:CDS 25.0%
!! TCAAAATCTGCATTGATATT+TGG - chr2_1:14745342-14745361 Msa0197100:CDS 25.0%
! CAATACATGTTTATATGGTT+AGG + chr2_1:14745451-14745470 None:intergenic 25.0%
! TTTGAATCATTAAAATAGCC+AGG - chr2_1:14745961-14745980 Msa0197100:five_prime_UTR 25.0%
CATTAAATGCTGAAAATGTG+TGG - chr2_1:14739812-14739831 Msa0197100:three_prime_UTR 30.0%
! GATTAACACTCATTTTCCAA+AGG - chr2_1:14739842-14739861 Msa0197100:three_prime_UTR 30.0%
!!! ACTTTTTTACCATAAAACCC+GGG - chr2_1:14740006-14740025 Msa0197100:CDS 30.0%
AAAGAAAAATCTGACCTAGA+AGG - chr2_1:14740109-14740128 Msa0197100:intron 30.0%
! TATTAACCTTTTTGCCTTCT+AGG + chr2_1:14740126-14740145 None:intergenic 30.0%
!! TAAAAAGGAAGTGTTACTTG+TGG - chr2_1:14740144-14740163 Msa0197100:intron 30.0%
TGAATTAATACTCACTCACT+TGG + chr2_1:14740170-14740189 None:intergenic 30.0%
GTGAGTGAGTATTAATTCAA+TGG - chr2_1:14740171-14740190 Msa0197100:intron 30.0%
AGTGAGTATTAATTCAATGG+AGG - chr2_1:14740174-14740193 Msa0197100:intron 30.0%
GTGAGTATTAATTCAATGGA+GGG - chr2_1:14740175-14740194 Msa0197100:intron 30.0%
TGTTTGCATTAGTATTGTTG+TGG + chr2_1:14740342-14740361 None:intergenic 30.0%
ACTAATGCAAACAACATAAG+CGG - chr2_1:14740349-14740368 Msa0197100:intron 30.0%
!!! ATTTTGAAGCATGATAGAAG+AGG + chr2_1:14740443-14740462 None:intergenic 30.0%
ATGAAATAGTAACCTAAACC+AGG + chr2_1:14740481-14740500 None:intergenic 30.0%
! TGGTTTAGGTTACTATTTCA+TGG - chr2_1:14740480-14740499 Msa0197100:intron 30.0%
TTCTGTTAAATCCAAGATCA+TGG - chr2_1:14740546-14740565 Msa0197100:intron 30.0%
! AAAAGCATAGCTTCCTTTAA+GGG + chr2_1:14741067-14741086 None:intergenic 30.0%
! AAAAAGCATAGCTTCCTTTA+AGG + chr2_1:14741068-14741087 None:intergenic 30.0%
!!! AAGCTATGCTTTTTCTTCAA+AGG - chr2_1:14741074-14741093 Msa0197100:CDS 30.0%
TTCCAAATACTTGAAACCAA+AGG - chr2_1:14741624-14741643 Msa0197100:intron 30.0%
GACAAAAATGCATGAGTTAA+GGG + chr2_1:14741652-14741671 None:intergenic 30.0%
AGACAAAAATGCATGAGTTA+AGG + chr2_1:14741653-14741672 None:intergenic 30.0%
TGTCTGAAAATAAAGGTAGA+TGG - chr2_1:14741668-14741687 Msa0197100:intron 30.0%
GTAATGAATCCAAAATTTGG+AGG - chr2_1:14741952-14741971 Msa0197100:intron 30.0%
TTAAGCTATGATGTGTTAGT+AGG - chr2_1:14742261-14742280 Msa0197100:intron 30.0%
TAGTAGGTCCTTAAGAATAA+TGG - chr2_1:14742277-14742296 Msa0197100:intron 30.0%
! TTTTCTCATTTGTCTCATCA+AGG - chr2_1:14742330-14742349 Msa0197100:intron 30.0%
!! ATGTATATTTTTGTGTCTGC+AGG - chr2_1:14742444-14742463 Msa0197100:intron 30.0%
CATCATAGAAAAATGCATGT+AGG + chr2_1:14742582-14742601 None:intergenic 30.0%
AACCTTATCACATAATGCAT+TGG - chr2_1:14742716-14742735 Msa0197100:intron 30.0%
ATCCAATGCATTATGTGATA+AGG + chr2_1:14742721-14742740 None:intergenic 30.0%
TCAATGATACACTAAAAGCT+TGG + chr2_1:14742754-14742773 None:intergenic 30.0%
GAAAACTTTGGATCAATATG+TGG + chr2_1:14742829-14742848 None:intergenic 30.0%
TAAGACAGTACATTACTACA+AGG + chr2_1:14742939-14742958 None:intergenic 30.0%
! ATCCAAGTTTGTAAGGTTTT+CGG - chr2_1:14743089-14743108 Msa0197100:intron 30.0%
ACAGTGTAATCTTAATGAGA+AGG + chr2_1:14743210-14743229 None:intergenic 30.0%
CAGTGGAAATCTATTATCAT+AGG + chr2_1:14743307-14743326 None:intergenic 30.0%
CTATGATAATAGATTTCCAC+TGG - chr2_1:14743305-14743324 Msa0197100:intron 30.0%
! TTTGTCTTCTTTGAAGGAAA+AGG - chr2_1:14743450-14743469 Msa0197100:intron 30.0%
TGAAGGTTAACATTTGAACT+AGG + chr2_1:14743566-14743585 None:intergenic 30.0%
TCAAATGTTAACCTTCAATG+TGG - chr2_1:14743569-14743588 Msa0197100:intron 30.0%
!! GACAAATTTTGATACCACAA+GGG + chr2_1:14743657-14743676 None:intergenic 30.0%
AGCTAGTTGAAATAGTATCA+TGG - chr2_1:14743735-14743754 Msa0197100:intron 30.0%
CCCCACATATATTTGATTAT+AGG - chr2_1:14743900-14743919 Msa0197100:intron 30.0%
TAATTTGGCATTCAGTTACT+TGG + chr2_1:14743996-14744015 None:intergenic 30.0%
CCCATATATACAAATATCCA+TGG - chr2_1:14744044-14744063 Msa0197100:intron 30.0%
AATGTGGAGTGAAATCAAAA+TGG + chr2_1:14744084-14744103 None:intergenic 30.0%
AATGTTCTGTTTATGAGGAT+TGG - chr2_1:14744174-14744193 Msa0197100:intron 30.0%
! GGAATCAACTTTTTGCAAAT+CGG - chr2_1:14744389-14744408 Msa0197100:intron 30.0%
AGAAAATACAGTGGATACTT+AGG - chr2_1:14744663-14744682 Msa0197100:CDS 30.0%
AGCAAGAGTTTATGAAGAAA+AGG - chr2_1:14744694-14744713 Msa0197100:CDS 30.0%
!! AGTGATTTGCTAAAATTGTG+TGG - chr2_1:14744970-14744989 Msa0197100:intron 30.0%
TTGGAGCTACAAAAAAATCA+CGG + chr2_1:14744999-14745018 None:intergenic 30.0%
TTATTGCAAAAGCTACACAT+TGG + chr2_1:14745018-14745037 None:intergenic 30.0%
GCAAATTTGAAAAATCATGG+TGG + chr2_1:14745058-14745077 None:intergenic 30.0%
!!! TATTTTGATCCAATGACCTT+TGG + chr2_1:14745279-14745298 None:intergenic 30.0%
TTGGATCAAAATAAGACGAT+TGG - chr2_1:14745286-14745305 Msa0197100:CDS 30.0%
! TGTTTATATGGTTAGGGTTT+TGG + chr2_1:14745444-14745463 None:intergenic 30.0%
ATCAGAAGCAAATAAACAAC+TGG - chr2_1:14745628-14745647 Msa0197100:five_prime_UTR 30.0%
! ACAACTGGTTTATCAATCAA+AGG - chr2_1:14745643-14745662 Msa0197100:five_prime_UTR 30.0%
GGTTTATCAATCAAAGGAAA+CGG - chr2_1:14745649-14745668 Msa0197100:five_prime_UTR 30.0%
ACATTATCCATGTAATAGTG+TGG + chr2_1:14745726-14745745 None:intergenic 30.0%
TATTAGACGGTTCTTTATGA+AGG - chr2_1:14745999-14746018 Msa0197100:five_prime_UTR 30.0%
AAGGTTGAGTTACAGAAGAA+GGG + chr2_1:14739668-14739687 None:intergenic 35.0%
! TCTAGCTAGTGGATAATACA+AGG + chr2_1:14739752-14739771 None:intergenic 35.0%
!!! TTTTTGGCTTCTACTACTAC+TGG + chr2_1:14739887-14739906 None:intergenic 35.0%
!!! GAAGTAGTGAAGAGGTTTTT+TGG + chr2_1:14739903-14739922 None:intergenic 35.0%
TACATGAAGAAGTAGTGAAG+AGG + chr2_1:14739911-14739930 None:intergenic 35.0%
TACTTCTTCATGTAACTGAC+TGG - chr2_1:14739917-14739936 Msa0197100:CDS 35.0%
!! ATAGTGATAGTGTTTTGTGG+TGG + chr2_1:14739959-14739978 None:intergenic 35.0%
!! ACTAAAGGCATCATCATCAT+TGG + chr2_1:14740274-14740293 None:intergenic 35.0%
TGATGAGATGAAGTGACTAA+AGG + chr2_1:14740289-14740308 None:intergenic 35.0%
TTGTTAGTGGAATTAGGGAT+GGG + chr2_1:14740385-14740404 None:intergenic 35.0%
ATTGTTAGTGGAATTAGGGA+TGG + chr2_1:14740386-14740405 None:intergenic 35.0%
!! AGAGGTGTTGTTATTACAGT+TGG + chr2_1:14740425-14740444 None:intergenic 35.0%
AATAACCATCAAAACACTCC+TGG - chr2_1:14740460-14740479 Msa0197100:intron 35.0%
AGAACTTTCCAAACCCTTAA+AGG - chr2_1:14741051-14741070 Msa0197100:CDS 35.0%
! CACCTTTGGTTTCAAGTATT+TGG + chr2_1:14741629-14741648 None:intergenic 35.0%
TTTCTGTGACCTCATCAAAA+GGG + chr2_1:14741868-14741887 None:intergenic 35.0%
ATCCAAAATTTGGAGGACTT+CGG - chr2_1:14741959-14741978 Msa0197100:intron 35.0%
CAGAAGAAACCCTAATTCAT+TGG + chr2_1:14742028-14742047 None:intergenic 35.0%
!! AGGAAAGTACTTTACCTCTT+TGG + chr2_1:14742139-14742158 None:intergenic 35.0%
! AAAGAGGTAAAGTACTTTCC+TGG - chr2_1:14742138-14742157 Msa0197100:intron 35.0%
! AAGAGGTAAAGTACTTTCCT+GGG - chr2_1:14742139-14742158 Msa0197100:intron 35.0%
TGGTGCTTATCAAAAAACTG+TGG - chr2_1:14742610-14742629 Msa0197100:intron 35.0%
!! TTCTAGCTTCCAACTATGTA+TGG - chr2_1:14742775-14742794 Msa0197100:intron 35.0%
! TCTAGCTTCCAACTATGTAT+GGG - chr2_1:14742776-14742795 Msa0197100:intron 35.0%
TGTAGTATATCATCGTATGC+TGG - chr2_1:14742893-14742912 Msa0197100:intron 35.0%
! TCCAAGTTTGTAAGGTTTTC+GGG - chr2_1:14743090-14743109 Msa0197100:intron 35.0%
! TATGCATTTTTCTTCGGCTT+TGG - chr2_1:14743174-14743193 Msa0197100:intron 35.0%
!!! TGGTTTTGATTTCTGCATCT+AGG - chr2_1:14743325-14743344 Msa0197100:intron 35.0%
!! AAAGGAGTGTCCATTATTTC+AGG - chr2_1:14743468-14743487 Msa0197100:intron 35.0%
!! AAGGAGTGTCCATTATTTCA+GGG - chr2_1:14743469-14743488 Msa0197100:intron 35.0%
GCATCTAAACCCTGAAATAA+TGG + chr2_1:14743481-14743500 None:intergenic 35.0%
TATTTCAGGGTTTAGATGCA+TGG - chr2_1:14743482-14743501 Msa0197100:intron 35.0%
CTACACATCCATTATTTCCA+AGG + chr2_1:14743510-14743529 None:intergenic 35.0%
AACATTTGAACTAGGTGCAT+AGG + chr2_1:14743558-14743577 None:intergenic 35.0%
!! TCATTGATTCACCACATTGA+AGG + chr2_1:14743583-14743602 None:intergenic 35.0%
!! GGACAAATTTTGATACCACA+AGG + chr2_1:14743658-14743677 None:intergenic 35.0%
GCTGAAACTAGCATATATGT+TGG + chr2_1:14743718-14743737 None:intergenic 35.0%
TACTCATCCATATACAACCA+AGG - chr2_1:14743854-14743873 Msa0197100:intron 35.0%
ACTCATCCATATACAACCAA+GGG - chr2_1:14743855-14743874 Msa0197100:intron 35.0%
GTCATATGAATTGCATCCTT+AGG + chr2_1:14743927-14743946 None:intergenic 35.0%
! CTTTTCTTTGAGTGGTGTTT+AGG + chr2_1:14743949-14743968 None:intergenic 35.0%
CTAAACACCACTCAAAGAAA+AGG - chr2_1:14743947-14743966 Msa0197100:intron 35.0%
!! GTTACTTGGAAGGTATTTCA+TGG + chr2_1:14743982-14744001 None:intergenic 35.0%
GGAGTGAAATCAAAATGGTT+AGG + chr2_1:14744079-14744098 None:intergenic 35.0%
CCAACAACAATAATTGCTAC+CGG + chr2_1:14744320-14744339 None:intergenic 35.0%
! CGGTAGCAATTATTGTTGTT+GGG - chr2_1:14744318-14744337 Msa0197100:intron 35.0%
ATATGATCAGCTTGTAGTGA+AGG - chr2_1:14744540-14744559 Msa0197100:intron 35.0%
!! CAGCTTTTGAGAAAATACAG+TGG - chr2_1:14744654-14744673 Msa0197100:CDS 35.0%
AAAAGGAAAGCTTCCAAAAG+AGG - chr2_1:14744719-14744738 Msa0197100:CDS 35.0%
TTAAAGTGGTGCTTACAGAT+GGG + chr2_1:14744794-14744813 None:intergenic 35.0%
! TTTAAAGTGGTGCTTACAGA+TGG + chr2_1:14744795-14744814 None:intergenic 35.0%
GTGGCAAGAGATTAAGAAAA+AGG + chr2_1:14744827-14744846 None:intergenic 35.0%
!! TTGAAAAATCATGGTGGACT+TGG + chr2_1:14745052-14745071 None:intergenic 35.0%
ATGTAATAGTGTGGATGACT+TGG + chr2_1:14745717-14745736 None:intergenic 35.0%
AAGTCATCCACACTATTACA+TGG - chr2_1:14745716-14745735 Msa0197100:five_prime_UTR 35.0%
! ATGGTGTTAGATAGATCCAT+GGG + chr2_1:14745765-14745784 None:intergenic 35.0%
! ATAAGCTGCTGGTTATTAGA+CGG - chr2_1:14745986-14746005 Msa0197100:five_prime_UTR 35.0%
GAAGGTTGAGTTACAGAAGA+AGG + chr2_1:14739669-14739688 None:intergenic 40.0%
ATGAAGAGAGAGAGAGATGA+AGG + chr2_1:14739687-14739706 None:intergenic 40.0%
TTTCCAAAGGAAATCTGTGC+AGG - chr2_1:14739855-14739874 Msa0197100:three_prime_UTR 40.0%
! TTTTTACCATAAAACCCGGG+CGG - chr2_1:14740009-14740028 Msa0197100:CDS 40.0%
ATCTGACCTAGAAGGCAAAA+AGG - chr2_1:14740117-14740136 Msa0197100:intron 40.0%
!! TCAATGGAGGGTAGTTCTAA+TGG - chr2_1:14740187-14740206 Msa0197100:intron 40.0%
!!! TCTTATGTGATGGGTGCTTT+TGG - chr2_1:14740223-14740242 Msa0197100:intron 40.0%
!! CTTTTGGAGAAAACAGTGGT+GGG - chr2_1:14740239-14740258 Msa0197100:intron 40.0%
!! AAAGGCATCATCATCATTGG+AGG + chr2_1:14740271-14740290 None:intergenic 40.0%
!!! CTAAACCAGGAGTGTTTTGA+TGG + chr2_1:14740468-14740487 None:intergenic 40.0%
CATCAAAACACTCCTGGTTT+AGG - chr2_1:14740466-14740485 Msa0197100:intron 40.0%
ATGGACAACATCAACAACCA+TGG - chr2_1:14740499-14740518 Msa0197100:intron 40.0%
AAGAAGAAGAAGAGCTTCCA+TGG + chr2_1:14740519-14740538 None:intergenic 40.0%
AGCCTACATCAACTGTCAAA+AGG - chr2_1:14740597-14740616 Msa0197100:intron 40.0%
!! GACCTTTTGACAGTTGATGT+AGG + chr2_1:14740602-14740621 None:intergenic 40.0%
! CATAGCTTCCTTTAAGGGTT+TGG + chr2_1:14741062-14741081 None:intergenic 40.0%
TATCCATGCATGTCTGTGTT+TGG - chr2_1:14741260-14741279 Msa0197100:intron 40.0%
! ACTTGTTAACAAGTGCCCTA+AGG - chr2_1:14741342-14741361 Msa0197100:intron 40.0%
CTTGTTAACAAGTGCCCTAA+GGG - chr2_1:14741343-14741362 Msa0197100:intron 40.0%
TTGTTAACAAGTGCCCTAAG+GGG - chr2_1:14741344-14741363 Msa0197100:intron 40.0%
TCCTTAAACAATGCCCCTTA+GGG + chr2_1:14741360-14741379 None:intergenic 40.0%
TTCCTTAAACAATGCCCCTT+AGG + chr2_1:14741361-14741380 None:intergenic 40.0%
ATAACCGTACAATGCCCTTA+GGG - chr2_1:14741434-14741453 Msa0197100:intron 40.0%
AATGCTAACAAGTGCCCTAA+GGG + chr2_1:14741451-14741470 None:intergenic 40.0%
AAATGCTAACAAGTGCCCTA+AGG + chr2_1:14741452-14741471 None:intergenic 40.0%
GTTTCTGTGACCTCATCAAA+AGG + chr2_1:14741869-14741888 None:intergenic 40.0%
CAGAAACTCTCAGATTTCAC+TGG - chr2_1:14741882-14741901 Msa0197100:intron 40.0%
! TTCCGAAGTCCTCCAAATTT+TGG + chr2_1:14741964-14741983 None:intergenic 40.0%
! GAAGATTGGTGGGTGAATTT+AGG - chr2_1:14741987-14742006 Msa0197100:intron 40.0%
ATAGTAGAGTAGCTCCAAAG+AGG - chr2_1:14742122-14742141 Msa0197100:intron 40.0%
! AGAGGTAAAGTACTTTCCTG+GGG - chr2_1:14742140-14742159 Msa0197100:intron 40.0%
CATAGGGAGTAGTGTTTACA+CGG + chr2_1:14742358-14742377 None:intergenic 40.0%
TAAACACTACTCCCTATGGA+TGG - chr2_1:14742360-14742379 Msa0197100:intron 40.0%
! TCTTTTGGCCCATACATAGT+TGG + chr2_1:14742787-14742806 None:intergenic 40.0%
ACCCGAAAACCTTACAAACT+TGG + chr2_1:14743094-14743113 None:intergenic 40.0%
GATGCAGAAATCAAAACCAG+TGG + chr2_1:14743324-14743343 None:intergenic 40.0%
TGGTGAAGTATACATTCACG+AGG - chr2_1:14743405-14743424 Msa0197100:intron 40.0%
CAAGGGCAAGCTAATTACAA+GGG - chr2_1:14743872-14743891 Msa0197100:intron 40.0%
AAGGGCAAGCTAATTACAAG+GGG - chr2_1:14743873-14743892 Msa0197100:intron 40.0%
! GCAATAGCCTTTTCTTTGAG+TGG + chr2_1:14743957-14743976 None:intergenic 40.0%
!! ACTTGGAAGGTATTTCATGG+AGG + chr2_1:14743979-14743998 None:intergenic 40.0%
TTGGCATTCAGTTACTTGGA+AGG + chr2_1:14743992-14744011 None:intergenic 40.0%
GAGAGGGATTGTCACTAATT+TGG + chr2_1:14744011-14744030 None:intergenic 40.0%
!! TGGTTAGGATTTTTGGACCA+TGG + chr2_1:14744064-14744083 None:intergenic 40.0%
CACATGAATAGAAGGCAAGT+TGG + chr2_1:14744205-14744224 None:intergenic 40.0%
CCGGTAGCAATTATTGTTGT+TGG - chr2_1:14744317-14744336 Msa0197100:intron 40.0%
TGCAAATCGGATTGAAGAGT+AGG - chr2_1:14744402-14744421 Msa0197100:intron 40.0%
AGCAGAAGACAGGGAATTAA+AGG - chr2_1:14744629-14744648 Msa0197100:CDS 40.0%
GCAGAAGACAGGGAATTAAA+GGG - chr2_1:14744630-14744649 Msa0197100:CDS 40.0%
! AATTGTTGCCTTGCCTCTTT+TGG + chr2_1:14744735-14744754 None:intergenic 40.0%
CAAGGCAACAATTGCTTGAA+TGG - chr2_1:14744742-14744761 Msa0197100:CDS 40.0%
CATAGGCAATCACCTAGTTA+CGG - chr2_1:14744881-14744900 Msa0197100:intron 40.0%
TGACAACTCATGTTTCGACT+TGG - chr2_1:14744929-14744948 Msa0197100:intron 40.0%
TAGCGTGACTTGAAAAACCA+TGG + chr2_1:14745098-14745117 None:intergenic 40.0%
ACCTTTCGATCTTGATCCAA+CGG - chr2_1:14745365-14745384 Msa0197100:CDS 40.0%
TGATCCAACGGTCAATAATG+TGG - chr2_1:14745377-14745396 Msa0197100:CDS 40.0%
TTGACCACATTATTGACCGT+TGG + chr2_1:14745384-14745403 None:intergenic 40.0%
ATAACAGGAATCACAGAAGC+TGG - chr2_1:14745581-14745600 Msa0197100:five_prime_UTR 40.0%
TCTCAGCAATTCATATCCCA+TGG - chr2_1:14745746-14745765 Msa0197100:five_prime_UTR 40.0%
! CATGGTGTTAGATAGATCCA+TGG + chr2_1:14745766-14745785 None:intergenic 40.0%
CCATGCTCTAGTTATTACCT+CGG - chr2_1:14745781-14745800 Msa0197100:five_prime_UTR 40.0%
! GCTTGTGGTCTTAAAAGTCT+TGG - chr2_1:14745809-14745828 Msa0197100:five_prime_UTR 40.0%
TAACCCTACGTTACGTTGTA+AGG - chr2_1:14745839-14745858 Msa0197100:five_prime_UTR 40.0%
ATGCCTTACAACGTAACGTA+GGG + chr2_1:14745845-14745864 None:intergenic 40.0%
AATGCCTTACAACGTAACGT+AGG + chr2_1:14745846-14745865 None:intergenic 40.0%
ATAACCAGCAGCTTATTTCC+TGG + chr2_1:14745982-14746001 None:intergenic 40.0%
! ACAGAAGAAGGGTTAGTGTG+AGG + chr2_1:14739657-14739676 None:intergenic 45.0%
CTCTTTGTCTCTCTAGCTAG+TGG + chr2_1:14739763-14739782 None:intergenic 45.0%
AAGCCTGCACAGATTTCCTT+TGG + chr2_1:14739861-14739880 None:intergenic 45.0%
! TTTTACCATAAAACCCGGGC+GGG - chr2_1:14740010-14740029 Msa0197100:CDS 45.0%
!! GGTGCTTTTGGAGAAAACAG+TGG - chr2_1:14740235-14740254 Msa0197100:intron 45.0%
!! GCTTTTGGAGAAAACAGTGG+TGG - chr2_1:14740238-14740257 Msa0197100:intron 45.0%
TAGTGGAATTAGGGATGGGA+AGG + chr2_1:14740381-14740400 None:intergenic 45.0%
TGATGTAGGCTTCCAAGAGA+CGG + chr2_1:14740588-14740607 None:intergenic 45.0%
ATGTGCAACTGCAGTGAGAA+TGG - chr2_1:14740934-14740953 Msa0197100:CDS 45.0%
TGTGCAACTGCAGTGAGAAT+GGG - chr2_1:14740935-14740954 Msa0197100:CDS 45.0%
! GCAGTTGGATCAGGTTGTTT+AGG - chr2_1:14740965-14740984 Msa0197100:CDS 45.0%
!! TCCAGCTCTAGATCAGTTCA+TGG - chr2_1:14740994-14741013 Msa0197100:CDS 45.0%
! TCCATGAACTGATCTAGAGC+TGG + chr2_1:14740998-14741017 None:intergenic 45.0%
CTTCCAAACACAGACATGCA+TGG + chr2_1:14741266-14741285 None:intergenic 45.0%
CATAACCGTACAATGCCCTT+AGG - chr2_1:14741433-14741452 Msa0197100:intron 45.0%
!! CATTGGTGTTGGTGCATTGA+AGG - chr2_1:14741717-14741736 Msa0197100:intron 45.0%
AATTTGGAGGACTTCGGAAC+AGG - chr2_1:14741965-14741984 Msa0197100:intron 45.0%
TTCGGAACAGGAAGATTGGT+GGG - chr2_1:14741977-14741996 Msa0197100:intron 45.0%
ACCTCGCAATTACCACTTCT+GGG + chr2_1:14742059-14742078 None:intergenic 45.0%
TACCTCGCAATTACCACTTC+TGG + chr2_1:14742060-14742079 None:intergenic 45.0%
CGTGTAAACACTACTCCCTA+TGG - chr2_1:14742356-14742375 Msa0197100:intron 45.0%
TTCTGCATCTAGGCTTGACT+AGG - chr2_1:14743335-14743354 Msa0197100:intron 45.0%
TCTGCATCTAGGCTTGACTA+GGG - chr2_1:14743336-14743355 Msa0197100:intron 45.0%
ACTAGGGTCTCTTGTGTGTA+TGG - chr2_1:14743352-14743371 Msa0197100:intron 45.0%
GCATGGAGCCTTGGAAATAA+TGG - chr2_1:14743499-14743518 Msa0197100:intron 45.0%
GTGTAGATAATGTGCCTTCC+CGG - chr2_1:14743524-14743543 Msa0197100:intron 45.0%
AGGTGCATAGGATAAAGAGC+CGG + chr2_1:14743546-14743565 None:intergenic 45.0%
AGCTTGCCCTTGGTTGTATA+TGG + chr2_1:14743864-14743883 None:intergenic 45.0%
!! CCTTGTAATTAGCTTGCCCT+TGG + chr2_1:14743874-14743893 None:intergenic 45.0%
CCAAGGGCAAGCTAATTACA+AGG - chr2_1:14743871-14743890 Msa0197100:intron 45.0%
! TTTGTATATATGGGGGCGCA+AGG + chr2_1:14744038-14744057 None:intergenic 45.0%
TCGGATTGAAGAGTAGGTCT+TGG - chr2_1:14744408-14744427 Msa0197100:intron 45.0%
CGGATTGAAGAGTAGGTCTT+GGG - chr2_1:14744409-14744428 Msa0197100:intron 45.0%
TGATCAGCTTGTAGTGAAGG+TGG - chr2_1:14744543-14744562 Msa0197100:intron 45.0%
CTTGTAGTGAAGGTGGAGAT+AGG - chr2_1:14744550-14744569 Msa0197100:intron 45.0%
AGTGAAGGTGGAGATAGGAA+TGG - chr2_1:14744555-14744574 Msa0197100:intron 45.0%
TAGATCCTCAAGCAGAAGAC+AGG - chr2_1:14744619-14744638 Msa0197100:CDS 45.0%
AGATCCTCAAGCAGAAGACA+GGG - chr2_1:14744620-14744639 Msa0197100:CDS 45.0%
AATTCCCTGTCTTCTGCTTG+AGG + chr2_1:14744627-14744646 None:intergenic 45.0%
GAAAGCTTCCAAAAGAGGCA+AGG - chr2_1:14744724-14744743 Msa0197100:CDS 45.0%
GGCAACAATTGCTTGAATGG+TGG - chr2_1:14744745-14744764 Msa0197100:CDS 45.0%
!! GTTTCGACTTGGTGCATGTT+TGG - chr2_1:14744940-14744959 Msa0197100:intron 45.0%
AAAGTCACGTTGAACCACCA+TGG - chr2_1:14745078-14745097 Msa0197100:intron 45.0%
CGTGACTTGAAAAACCATGG+TGG + chr2_1:14745095-14745114 None:intergenic 45.0%
TGATCCAATGACCTTTGGTG+TGG + chr2_1:14745274-14745293 None:intergenic 45.0%
ACCGTTGGATCAAGATCGAA+AGG + chr2_1:14745369-14745388 None:intergenic 45.0%
TCAATCAAAGGAAACGGCAC+TGG - chr2_1:14745655-14745674 Msa0197100:five_prime_UTR 45.0%
ACAAACTGCATGTCCTCTGA+AGG + chr2_1:14745684-14745703 None:intergenic 45.0%
TTCAGAGGACATGCAGTTTG+TGG - chr2_1:14745683-14745702 Msa0197100:five_prime_UTR 45.0%
CCGAGGTAATAACTAGAGCA+TGG + chr2_1:14745784-14745803 None:intergenic 45.0%
ATAGCCAGGAAATAAGCTGC+TGG - chr2_1:14745975-14745994 Msa0197100:five_prime_UTR 45.0%
!! TTTGATTATTAATTAATTAA+AGG - chr2_1:14741317-14741336 Msa0197100:intron 5.0%
!! TTGATTATTAATTAATTAAA+GGG - chr2_1:14741318-14741337 Msa0197100:intron 5.0%
! GAAGGGTTAGTGTGAGGCAT+TGG + chr2_1:14739651-14739670 None:intergenic 50.0%
GTGAGGATGAGCCATGATCT+TGG + chr2_1:14740560-14740579 None:intergenic 50.0%
TCCTCACTATCACCGTCTCT+TGG - chr2_1:14740573-14740592 Msa0197100:intron 50.0%
! TCCAAGAGACGGTGATAGTG+AGG + chr2_1:14740577-14740596 None:intergenic 50.0%
AACCTTGCCACCACTTCACT+TGG + chr2_1:14740905-14740924 None:intergenic 50.0%
AGAATGGGTGGAGATGCAGT+TGG - chr2_1:14740950-14740969 Msa0197100:CDS 50.0%
!! GCCCTAAGGGGCATTGTTTA+AGG - chr2_1:14741356-14741375 Msa0197100:intron 50.0%
!! AGTGCCCTAAGGGCATTGTA+CGG + chr2_1:14741441-14741460 None:intergenic 50.0%
!! GCATGAGTTAAGGGCACCTT+TGG + chr2_1:14741643-14741662 None:intergenic 50.0%
GGACTTCGGAACAGGAAGAT+TGG - chr2_1:14741973-14741992 Msa0197100:intron 50.0%
CTTCGGAACAGGAAGATTGG+TGG - chr2_1:14741976-14741995 Msa0197100:intron 50.0%
TCTGCACTTGTTCCCAGAAG+TGG - chr2_1:14742044-14742063 Msa0197100:intron 50.0%
TCCCAGAAGTGGTAATTGCG+AGG - chr2_1:14742055-14742074 Msa0197100:intron 50.0%
GGTTTAGATGCATGGAGCCT+TGG - chr2_1:14743490-14743509 Msa0197100:intron 50.0%
CATAGGATAAAGAGCCGGGA+AGG + chr2_1:14743541-14743560 None:intergenic 50.0%
GGTGCATAGGATAAAGAGCC+GGG + chr2_1:14743545-14743564 None:intergenic 50.0%
GGTGGAGCAGACATTACAAG+TGG - chr2_1:14744763-14744782 Msa0197100:CDS 50.0%
GTGGTGCTTACAGATGGGTA+AGG + chr2_1:14744789-14744808 None:intergenic 50.0%
! TTTGGTGTGGTGTGACTGCA+CGG + chr2_1:14745261-14745280 None:intergenic 50.0%
CACACCACACCAAAGGTCAT+TGG - chr2_1:14745267-14745286 Msa0197100:CDS 50.0%
GGACATGCAGTTTGTGGTGA+TGG - chr2_1:14745689-14745708 Msa0197100:five_prime_UTR 50.0%
!! ATTACCTCGGTGCTTGCTTG+TGG - chr2_1:14745794-14745813 Msa0197100:five_prime_UTR 50.0%
AGAAGCAGTAGAGTGCACGC+GGG + chr2_1:14739712-14739731 None:intergenic 55.0%
GAGAAGCAGTAGAGTGCACG+CGG + chr2_1:14739713-14739732 None:intergenic 55.0%
! GGTTGGAGCACCAAGTGAAG+TGG - chr2_1:14740892-14740911 Msa0197100:intron 55.0%
! TGGAGCACCAAGTGAAGTGG+TGG - chr2_1:14740895-14740914 Msa0197100:intron 55.0%
CACCAAGTGAAGTGGTGGCA+AGG - chr2_1:14740900-14740919 Msa0197100:intron 55.0%
GCAACTGCAGTGAGAATGGG+TGG - chr2_1:14740938-14740957 Msa0197100:CDS 55.0%
GGTGGAGATGCAGTTGGATC+AGG - chr2_1:14740956-14740975 Msa0197100:CDS 55.0%
TCCTGGGGACAAGTGCATAG+TGG - chr2_1:14742155-14742174 Msa0197100:intron 55.0%
TCCACTATGCACTTGTCCCC+AGG + chr2_1:14742159-14742178 None:intergenic 55.0%
GTGCAGTCACACCACACCAA+AGG - chr2_1:14745260-14745279 Msa0197100:CDS 55.0%
!! CTGGCTCTAGCAGAGTCAAC+AGG - chr2_1:14745600-14745619 Msa0197100:five_prime_UTR 55.0%
! AAGACCACAAGCAAGCACCG+AGG + chr2_1:14745801-14745820 None:intergenic 55.0%
GAAGCAGTAGAGTGCACGCG+GGG + chr2_1:14739711-14739730 None:intergenic 60.0%
! GGGGGCGCAAGGAAAAGAGA+GGG + chr2_1:14744027-14744046 None:intergenic 60.0%
! TGGGGGCGCAAGGAAAAGAG+AGG + chr2_1:14744028-14744047 None:intergenic 60.0%
! ACGGCACTGGAAGCCTTCAG+AGG - chr2_1:14745668-14745687 Msa0197100:five_prime_UTR 60.0%
! GGTCACCCGCCCGGGTTTTA+TGG + chr2_1:14740018-14740037 None:intergenic 65.0%
TCACACAAGGGTCACCCGCC+CGG + chr2_1:14740027-14740046 None:intergenic 65.0%
CACACAAGGGTCACCCGCCC+GGG + chr2_1:14740026-14740045 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 14739646 14746058 14739646 ID=Msa0197100;Name=Msa0197100
chr2_1 mRNA 14739646 14746058 14739646 ID=Msa0197100-mRNA-1;Parent=Msa0197100;Name=Msa0197100-mRNA-1;_AED=0.09;_eAED=0.09;_QI=544|1|1|1|1|1|4|267|378
chr2_1 exon 14739646 14740116 14739646 ID=Msa0197100-mRNA-1:exon:6293;Parent=Msa0197100-mRNA-1
chr2_1 exon 14740907 14741154 14740907 ID=Msa0197100-mRNA-1:exon:6292;Parent=Msa0197100-mRNA-1
chr2_1 exon 14744556 14744811 14744556 ID=Msa0197100-mRNA-1:exon:6291;Parent=Msa0197100-mRNA-1
chr2_1 exon 14745086 14746058 14745086 ID=Msa0197100-mRNA-1:exon:6290;Parent=Msa0197100-mRNA-1
chr2_1 five_prime_UTR 14745515 14746058 14745515 ID=Msa0197100-mRNA-1:five_prime_utr;Parent=Msa0197100-mRNA-1
chr2_1 CDS 14745086 14745514 14745086 ID=Msa0197100-mRNA-1:cds;Parent=Msa0197100-mRNA-1
chr2_1 CDS 14744556 14744811 14744556 ID=Msa0197100-mRNA-1:cds;Parent=Msa0197100-mRNA-1
chr2_1 CDS 14740907 14741154 14740907 ID=Msa0197100-mRNA-1:cds;Parent=Msa0197100-mRNA-1
chr2_1 CDS 14739913 14740116 14739913 ID=Msa0197100-mRNA-1:cds;Parent=Msa0197100-mRNA-1
chr2_1 three_prime_UTR 14739646 14739912 14739646 ID=Msa0197100-mRNA-1:three_prime_utr;Parent=Msa0197100-mRNA-1
Gene Sequence

>Msa0197100

ATGGAGGGTAGTTCTAATGGAAGTTCTTCTTATTCTTATGTGATGGGTGCTTTTGGAGAAAACAGTGGTGGGCTATGTCCTCCAATGATGATGATGCCTTTAGTCACTTCATCTCATCATAATGCTCATCATCCAATAAATTCCAATAACCACAACAATACTAATGCAAACAACATAAGCGGTCTTTTCCTTCCCATCCCTAATTCCACTAACAATAATAACAATCACTACACCAACTGTAATAACAACACCTCTTCTATCATGCTTCAAAATAACCATCAAAACACTCCTGGTTTAGGTTACTATTTCATGGACAACATCAACAACCATGGAAGCTCTTCTTCTTCTTCTTCTTCTTCTGTTAAATCCAAGATCATGGCTCATCCTCACTATCACCGTCTCTTGGAAGCCTACATCAACTGTCAAAAGGTTGGAGCACCAAGTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCAACTGCAGTGAGAATGGGTGGAGATGCAGTTGGATCAGGTTGTTTAGGTGAAGATCCAGCTCTAGATCAGTTCATGGAAGCTTACTGTGAGATGCTTATCAAGTATGAGCAAGAACTTTCCAAACCCTTAAAGGAAGCTATGCTTTTTCTTCAAAGGATTGAAGTCCAGTTCAAAAATCTTACAGTTTCTTCTTCTTCAGATAATATTGCTTGTAGTGAAGGTGGAGATAGGAATGGATCATCTGAAGAAGATCATGTTGATATGTACAACAACATGATAGATCCTCAAGCAGAAGACAGGGAATTAAAGGGTCAGCTTTTGAGAAAATACAGTGGATACTTAGGCAGTCTGAAGCAAGAGTTTATGAAGAAAAGGAAAAAAGGAAAGCTTCCAAAAGAGGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAGTGGCCTTACCCATCTGAATCACAGAAGCTGGCTCTAGCAGAGTCAACAGGTCTTGATCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAGTCATCCACACTATTACATGGATAATGTTCTCAGCAATTCATATCCCATGGATCTATCTAACACCATGCTCTAG
Protein sequence

>Msa0197100

MEGSSNGSSSYSYVMGAFGENSGGLCPPMMMMPLVTSSHHNAHHPINSNNHNNTNANNISGLFLPIPNSTNNNNNHYTNCNNNTSSIMLQNNHQNTPGLGYYFMDNINNHGSSSSSSSSSVKSKIMAHPHYHRLLEAYINCQKVGAPSEVVARLEEACATAVRMGGDAVGSGCLGEDPALDQFMEAYCEMLIKYEQELSKPLKEAMLFLQRIEVQFKNLTVSSSSDNIACSEGGDRNGSSEEDHVDMYNNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNVLSNSYPMDLSNTML*