AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0115410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0115410 MtrunA17_Chr1g0212481 92.333 600 22 2 1 576 1 600 0.0 1142
Msa0115410 MtrunA17_Chr1g0152521 68.627 357 31 5 1 325 1 308 1.20e-161 464
Msa0115410 MtrunA17_Chr1g0152511 78.715 249 6 2 328 576 1 202 4.35e-131 381
Msa0115410 MtrunA17_Chr4g0039621 26.415 583 320 24 57 550 19 581 3.84e-41 159
Msa0115410 MtrunA17_Chr4g0068571 27.294 425 257 17 153 543 37 443 9.13e-23 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0115410 AT3G55400.1 71.570 605 133 4 1 566 1 605 0.0 880
Msa0115410 AT3G55400.2 72.816 515 103 3 1 478 1 515 0.0 766
Msa0115410 AT4G13780.1 25.175 572 327 20 57 545 20 573 2.08e-40 157

Find 189 sgRNAs with CRISPR-Local

Find 431 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATGGCCGTATACCATTT+TGG 0.163191 1_3:-34284748 None:intergenic
CGACGCCATTGCTCGCTTTC+AGG 0.172482 1_3:+34281730 Msa0115410:CDS
AACGATTTGGTTAGTAAGTT+TGG 0.200559 1_3:+34286054 Msa0115410:CDS
GAGATGGAAATAGGGTTTAT+TGG 0.220234 1_3:-34281570 None:intergenic
TTCCTCAGAGAGGTGGAATT+TGG 0.232008 1_3:+34286099 Msa0115410:CDS
AGAAGAAGGGAGATGGAAAT+AGG 0.249938 1_3:-34281579 None:intergenic
TGGCAGGAAATCTTCTTAAT+AGG 0.253659 1_3:+34286331 Msa0115410:intron
TACGTTTCCATGCCGTTTAT+TGG 0.277442 1_3:+34284691 Msa0115410:CDS
TTTAATTTGATAGCGGCTAT+TGG 0.277602 1_3:+34281840 Msa0115410:intron
GAATCAGCTGGATGCATCTA+AGG 0.278513 1_3:+34281393 Msa0115410:five_prime_UTR
AAAGATGGCTGCACAAAGTT+TGG 0.304459 1_3:-34282967 None:intergenic
TTCCCGAGCATCCGTTGATT+GGG 0.310196 1_3:+34283757 Msa0115410:CDS
TTACGCAAATATTTATATAT+AGG 0.312895 1_3:+34287970 Msa0115410:three_prime_UTR
GTATGGTTTGATGCTTTACT+AGG 0.314469 1_3:+34283818 Msa0115410:CDS
TACGCTTGAACCAAACGATT+TGG 0.323345 1_3:+34286041 Msa0115410:CDS
ATCAGCTTGTGAGGCTGTTC+TGG 0.327249 1_3:+34286990 Msa0115410:CDS
TACCAAGTGGGGTGGACTTA+AGG 0.328656 1_3:+34287708 Msa0115410:CDS
GAAACGGTGTTTAGTAAATC+AGG 0.339575 1_3:-34284164 None:intergenic
CCCAGGTTGCTGCTTCAAAT+TGG 0.340068 1_3:-34287605 None:intergenic
TTTCCCGAGCATCCGTTGAT+TGG 0.340690 1_3:+34283756 Msa0115410:CDS
TGGGCTAAGCCTTCCCAAAA+TGG 0.344820 1_3:+34284734 Msa0115410:CDS
CGTTAACGCCCCTCCTCATA+TGG 0.346271 1_3:+34281682 Msa0115410:CDS
TCTTTCCCGCAGATAACATT+AGG 0.357272 1_3:-34281440 None:intergenic
ATGCACAGCTTGGCTATTCC+AGG 0.357457 1_3:+34287580 Msa0115410:CDS
CCAGCTATGCTAATGTCTGC+TGG 0.359184 1_3:+34284714 Msa0115410:CDS
GAACTCAAGCTCGGAGTAAC+AGG 0.361149 1_3:-34287549 None:intergenic
ACCTTAAGCCTTGTGTTTCA+AGG 0.361855 1_3:+34282875 Msa0115410:CDS
ACGATTTGGTTAGTAAGTTT+GGG 0.362204 1_3:+34286055 Msa0115410:CDS
TTACTAAACACCGTTTCTTC+AGG 0.362225 1_3:+34284170 Msa0115410:CDS
TCCTTGAAACACAAGGCTTA+AGG 0.367680 1_3:-34282876 None:intergenic
CCAGCTACACTGCACTTGAT+TGG 0.385424 1_3:+34284197 Msa0115410:CDS
TTAATTTGATAGCGGCTATT+GGG 0.387680 1_3:+34281841 Msa0115410:intron
ACCAAGTGGGGTGGACTTAA+GGG 0.391465 1_3:+34287709 Msa0115410:CDS
GAGGTGGAATTTGGCAATGA+TGG 0.400433 1_3:+34286108 Msa0115410:CDS
GAAGAAGGGAGATGGAAATA+GGG 0.400944 1_3:-34281578 None:intergenic
ATCAACGGATGCTCGGGAAA+TGG 0.401014 1_3:-34283753 None:intergenic
GTTGAGGTTGAGCCATGGCC+TGG 0.404063 1_3:-34287735 None:intergenic
AACTTACTAACCAAATCGTT+TGG 0.404070 1_3:-34286051 None:intergenic
AAGAAAGTTATATTCATTAC+CGG 0.407015 1_3:+34281865 Msa0115410:CDS
TAATGCTGGTAATTCCTATA+TGG 0.408560 1_3:+34287020 Msa0115410:CDS
TGTGAGGCTGTTCTGGAGAT+TGG 0.410328 1_3:+34286997 Msa0115410:CDS
AGCCTTCCCAAAATGGTATA+CGG 0.411499 1_3:+34284741 Msa0115410:CDS
CAGCCTCACAAGCTGATGTC+AGG 0.412097 1_3:-34286984 None:intergenic
AATAGGGTTTATTGGATTTG+AGG 0.414097 1_3:-34281562 None:intergenic
AGCAATGGCGTCGGCGGCGA+TGG 0.415306 1_3:-34281720 None:intergenic
CCAATCAAGTGCAGTGTAGC+TGG 0.425417 1_3:-34284197 None:intergenic
TGTCAGCTGTGAGGAATATA+AGG 0.426210 1_3:+34282550 Msa0115410:CDS
CATTTACCGAGCTGATTATG+AGG 0.426407 1_3:+34282517 Msa0115410:CDS
TTGCAGAACAGAGCTGGTCT+TGG 0.428986 1_3:-34281602 None:intergenic
ATTCCTTTACCTCGTGTAAA+CGG 0.431671 1_3:-34282990 None:intergenic
GCACATCTTGCCAATACAAT+TGG 0.438695 1_3:+34286168 Msa0115410:CDS
TTCGTCATCATTTGAGGAAG+TGG 0.439070 1_3:-34281630 None:intergenic
CTCACCATGTTCATCGGTGC+CGG 0.442498 1_3:-34281884 None:intergenic
AGAGCTGGTCTTGGAGAAGA+AGG 0.442571 1_3:-34281593 None:intergenic
ACCAATTTGAAGCAGCAACC+TGG 0.444665 1_3:+34287604 Msa0115410:CDS
GCTCAAAGTACCAATTGTAT+TGG 0.446015 1_3:-34286178 None:intergenic
GCCCCAATCAACGGATGCTC+GGG 0.451436 1_3:-34283759 None:intergenic
ACTTAAGGGTGGCCAGGCCA+TGG 0.453301 1_3:+34287723 Msa0115410:CDS
TGAGTCTTGTCACTCGGAAC+AGG 0.454916 1_3:-34283785 None:intergenic
AAACAAGCTCAAGAAGTTGT+TGG 0.459841 1_3:+34287847 Msa0115410:CDS
AGGGGCACGCTCATCCATAT+AGG 0.466606 1_3:-34287034 None:intergenic
TGCTGCTTCAAATTGGTCCC+TGG 0.467272 1_3:-34287598 None:intergenic
CCTCAGGCCACTATTGATCC+AGG 0.467562 1_3:-34283723 None:intergenic
AAACTGAAGTGGAAGACAAA+GGG 0.469002 1_3:+34287782 Msa0115410:CDS
AAGAAGACTCTGAAAAGTAA+AGG 0.472328 1_3:+34287817 Msa0115410:CDS
TAGCATAGCTGGCCAATAAA+CGG 0.473012 1_3:-34284703 None:intergenic
CCAGCAGACATTAGCATAGC+TGG 0.474341 1_3:-34284714 None:intergenic
GTCAAAATATCAGAAGTCAT+TGG 0.475950 1_3:+34282924 Msa0115410:CDS
TGCCCCAATCAACGGATGCT+CGG 0.476088 1_3:-34283760 None:intergenic
TGTTATCTGCGGGAAAGAAA+CGG 0.478038 1_3:+34281445 Msa0115410:five_prime_UTR
GGATTTGAGGTGAGAAACAT+TGG 0.479677 1_3:-34281549 None:intergenic
AGAAGACTCTGAAAAGTAAA+GGG 0.482397 1_3:+34287818 Msa0115410:CDS
GCCTTGTGTTTCAAGGAAAG+AGG 0.485059 1_3:+34282882 Msa0115410:CDS
ATGTTAGGATGGTATGAAGA+TGG 0.485616 1_3:+34286002 Msa0115410:intron
AGGTGGAATTTGGCAATGAT+GGG 0.485834 1_3:+34286109 Msa0115410:CDS
AGGAACATAGTACATATGTA+TGG 0.486000 1_3:+34287990 Msa0115410:three_prime_UTR
CTCCCTGACATCAGCTTGTG+AGG 0.486304 1_3:+34286981 Msa0115410:CDS
TTAGTAAATCAGGTTGCTCC+TGG 0.489812 1_3:-34284154 None:intergenic
GAGTAAGCGCTGCCCATATG+AGG 0.492891 1_3:-34281695 None:intergenic
CAAGGACAATGTAGCGAGGC+TGG 0.493628 1_3:+34286431 Msa0115410:CDS
ATTGGAACGAAGTGAAAGAA+TGG 0.493740 1_3:-34281531 None:intergenic
GGGTGGACTTAAGGGTGGCC+AGG 0.494372 1_3:+34287717 Msa0115410:CDS
ATCCTAGCAAAGATTGGTTG+AGG 0.496658 1_3:-34287751 None:intergenic
TGCAGAAGGAAATGCATTCA+AGG 0.496773 1_3:+34286413 Msa0115410:CDS
TGTTAGGATGGTATGAAGAT+GGG 0.497162 1_3:+34286003 Msa0115410:intron
AATCCACTGCCAGTGTTGAT+TGG 0.502097 1_3:-34286380 None:intergenic
AAAAGACCATCTGAATCAGC+TGG 0.504522 1_3:+34281381 None:intergenic
GTAGGGTTCGTCATCATTTG+AGG 0.505930 1_3:-34281636 None:intergenic
CTGCCAATCAACACTGGCAG+TGG 0.507171 1_3:+34286377 Msa0115410:CDS
GCAACTGCTGCCGTGGCTCA+AGG 0.510640 1_3:+34281913 Msa0115410:CDS
ACCCTTAAGTCCACCCCACT+TGG 0.511818 1_3:-34287710 None:intergenic
AGACTCAGACTATATATGTA+TGG 0.517740 1_3:+34283801 Msa0115410:CDS
CTATTTGATGCAGGATGAGA+AGG 0.520213 1_3:+34282822 Msa0115410:intron
AGCTGGCCAACCTGAAGAAA+CGG 0.524943 1_3:-34284180 None:intergenic
TATGGTTTGATGCTTTACTA+GGG 0.525816 1_3:+34283819 Msa0115410:CDS
TAAACACCGTTTCTTCAGGT+TGG 0.526746 1_3:+34284174 Msa0115410:CDS
AATCTTCTTAATAGGACTCT+AGG 0.528211 1_3:+34286339 Msa0115410:CDS
GTTCAAACCTGGATCAATAG+TGG 0.530179 1_3:+34283716 Msa0115410:CDS
CCTTGGTCTCTCTTTAAGCA+AGG 0.530338 1_3:+34287054 Msa0115410:CDS
CAGCTATGCTAATGTCTGCT+GGG 0.530697 1_3:+34284715 Msa0115410:CDS
GTTCTGGAGATTGGTAATGC+TGG 0.538081 1_3:+34287006 Msa0115410:CDS
AATGGCGTCGGCGGCGATGG+TGG 0.539434 1_3:-34281717 None:intergenic
GAGCATTTGCAGAACAGAGC+TGG 0.542714 1_3:-34281608 None:intergenic
CCCAAAATGGTATACGGCCA+TGG 0.542751 1_3:+34284747 Msa0115410:CDS
GATTCCACGGTGGCTGCAGA+AGG 0.543559 1_3:+34286399 Msa0115410:CDS
TGCTTCTGAAGCAGCTGCCA+AGG 0.545752 1_3:+34287083 Msa0115410:CDS
TCCCGAGCATCCGTTGATTG+GGG 0.545821 1_3:+34283758 Msa0115410:CDS
GTCTTGGAGAAGAAGGGAGA+TGG 0.547721 1_3:-34281586 None:intergenic
ATGAAGATGGGCAAGTCACT+AGG 0.550900 1_3:+34286015 Msa0115410:CDS
ATATGGATGAGCGTGCCCCT+TGG 0.551543 1_3:+34287037 Msa0115410:CDS
AGCTCGGTAAATGTCACCAT+TGG 0.558279 1_3:-34282507 None:intergenic
CTGTCTCTAATATAATTACA+AGG 0.560785 1_3:-34287500 None:intergenic
TATTCGAGAGTGCTTGCCAA+TGG 0.562606 1_3:+34282491 Msa0115410:CDS
AACAGGTATGCCCCAATCAA+CGG 0.565056 1_3:-34283768 None:intergenic
ACCTCGTGTAAACGGAAAGA+TGG 0.565307 1_3:-34282982 None:intergenic
AACCTCAACCAATCTTTGCT+AGG 0.565548 1_3:+34287749 Msa0115410:CDS
ATCAGCACTAGCTGATGACC+AGG 0.568431 1_3:+34284136 Msa0115410:CDS
ATACTTCTTCCTCAGAGAGG+TGG 0.569549 1_3:+34286092 Msa0115410:CDS
AAAGCGAGCAATGGCGTCGG+CGG 0.570755 1_3:-34281726 None:intergenic
CCAATTTGAAGCAGCAACCT+GGG 0.571584 1_3:+34287605 Msa0115410:CDS
GATTGAAAATCAAACTGAAG+TGG 0.574353 1_3:+34287771 Msa0115410:CDS
TCCTCTTTCCTTGAAACACA+AGG 0.575285 1_3:-34282883 None:intergenic
GGGGCGTTAACGTAGTAAAG+AGG 0.576539 1_3:-34281671 None:intergenic
TAAATTTCTAGGTTCAAACC+TGG 0.577775 1_3:+34283705 Msa0115410:intron
TGCTTCCTAATGTTATCTGC+GGG 0.578122 1_3:+34281435 Msa0115410:five_prime_UTR
TTGAAACACAAGGCTTAAGG+TGG 0.578255 1_3:-34282873 None:intergenic
TACACTGCACTTGATTGGTA+AGG 0.579282 1_3:+34284202 Msa0115410:CDS
TATATTCTCGAACTCAAGCT+CGG 0.581656 1_3:-34287558 None:intergenic
AAGAGGGGTTGTGATGACGT+AGG 0.584740 1_3:-34281654 None:intergenic
AGCGCTGCCCATATGAGGAG+GGG 0.586186 1_3:-34281690 None:intergenic
AATCAGCTGGATGCATCTAA+GGG 0.586435 1_3:+34281394 Msa0115410:five_prime_UTR
TAACATTAGGAAGCACACAC+AGG 0.586959 1_3:-34281427 None:intergenic
GTTAACGCCCCTCCTCATAT+GGG 0.587213 1_3:+34281683 Msa0115410:CDS
AAAATATCAGAAGTCATTGG+AGG 0.587646 1_3:+34282927 Msa0115410:CDS
GGGCGTTAACGTAGTAAAGA+GGG 0.589775 1_3:-34281670 None:intergenic
GGGAAATGGAAAAGTCCCTC+AGG 0.591961 1_3:-34283739 None:intergenic
GAAAATTGCAACTGCTGCCG+TGG 0.592158 1_3:+34281906 Msa0115410:CDS
ATACCTTCGTCAAGAATCCA+TGG 0.594060 1_3:-34284764 None:intergenic
AGCCTCACAAGCTGATGTCA+GGG 0.594895 1_3:-34286983 None:intergenic
AACATTAGGAAGCACACACA+GGG 0.595670 1_3:-34281426 None:intergenic
TCGAGAATATATGCACAGCT+TGG 0.599510 1_3:+34287570 Msa0115410:CDS
TAGCTGGCCAATAAACGGCA+TGG 0.600474 1_3:-34284698 None:intergenic
ACACAAGGCTTAAGGTGGAT+CGG 0.602973 1_3:-34282868 None:intergenic
CAAACTGAAGTGGAAGACAA+AGG 0.603151 1_3:+34287781 Msa0115410:CDS
ATTTACCGAGCTGATTATGA+GGG 0.603837 1_3:+34282518 Msa0115410:CDS
CCTTGCTTAAAGAGAGACCA+AGG 0.604022 1_3:-34287054 None:intergenic
AAAGAACTGCCAATCAACAC+TGG 0.604833 1_3:+34286371 Msa0115410:CDS
CAAGCATGAAGCAATTGTGA+AGG 0.606448 1_3:+34282463 Msa0115410:CDS
CTGGATCAATAGTGGCCTGA+GGG 0.608588 1_3:+34283724 Msa0115410:CDS
AGGGGTGGAACCTTGAGCCA+CGG 0.609720 1_3:-34281923 None:intergenic
AGAGGGGTTGTGATGACGTA+GGG 0.611101 1_3:-34281653 None:intergenic
AAGCGCTGCCCATATGAGGA+GGG 0.613611 1_3:-34281691 None:intergenic
AACACTGGCAGTGGATTCCA+CGG 0.615601 1_3:+34286386 Msa0115410:CDS
AAATTCCCTCATAATCAGCT+CGG 0.616005 1_3:-34282523 None:intergenic
TGCGGGAAAGAAACGGCTTG+AGG 0.621335 1_3:+34281452 Msa0115410:five_prime_UTR
TAAGCGCTGCCCATATGAGG+AGG 0.622703 1_3:-34281692 None:intergenic
ATTACCGGCACCGATGAACA+TGG 0.624333 1_3:+34281880 Msa0115410:CDS
GAGCTGGTCTTGGAGAAGAA+GGG 0.624359 1_3:-34281592 None:intergenic
TGCACAGCTTGGCTATTCCA+GGG 0.630460 1_3:+34287581 Msa0115410:CDS
GTGCTTCCTAATGTTATCTG+CGG 0.630510 1_3:+34281434 Msa0115410:five_prime_UTR
GAAGACAAAGGGGTTGCAGT+CGG 0.633467 1_3:+34287793 Msa0115410:CDS
CTGAAAGCGAGCAATGGCGT+CGG 0.634768 1_3:-34281729 None:intergenic
GCCATCTTTCCGTTTACACG+AGG 0.638336 1_3:+34282981 Msa0115410:CDS
AGGTACCTGAAAGCGAGCAA+TGG 0.639138 1_3:-34281735 None:intergenic
TAGAGAGATACCAAGTGGGG+TGG 0.641306 1_3:+34287700 Msa0115410:intron
AACTGAAGTGGAAGACAAAG+GGG 0.642983 1_3:+34287783 Msa0115410:CDS
ATAGTCTGAGTCTTGTCACT+CGG 0.651357 1_3:-34283791 None:intergenic
CAATGATGGGGACTATTCAG+AGG 0.651752 1_3:+34286122 Msa0115410:CDS
GATTGGTTGAGGTTGAGCCA+TGG 0.658278 1_3:-34287740 None:intergenic
TGCCAAATTCCACCTCTCTG+AGG 0.662782 1_3:-34286101 None:intergenic
GGGAAAGAAACGGCTTGAGG+AGG 0.662942 1_3:+34281455 Msa0115410:five_prime_UTR
ATTGTAGAGAGATACCAAGT+GGG 0.663995 1_3:+34287696 Msa0115410:intron
TGGTCTCTCTTTAAGCAAGG+AGG 0.665745 1_3:+34287057 Msa0115410:CDS
CATTGTAGAGAGATACCAAG+TGG 0.666340 1_3:+34287695 Msa0115410:intron
CTTGCTTAAAGAGAGACCAA+GGG 0.666502 1_3:-34287053 None:intergenic
TAGATACTTCTTCCTCAGAG+AGG 0.671329 1_3:+34286089 Msa0115410:CDS
GGTGGAATTTGGCAATGATG+GGG 0.671855 1_3:+34286110 Msa0115410:CDS
CCTGGATCAATAGTGGCCTG+AGG 0.674293 1_3:+34283723 Msa0115410:CDS
AATTTATTGTGTCAGCTGTG+AGG 0.678267 1_3:+34282541 Msa0115410:CDS
GGCGTTAACGTAGTAAAGAG+GGG 0.684483 1_3:-34281669 None:intergenic
AGTAACAGGAGATAGTGCAA+TGG 0.702926 1_3:-34287535 None:intergenic
TTGTAGAGAGATACCAAGTG+GGG 0.703831 1_3:+34287697 Msa0115410:intron
CGGCCATGGATTCTTGACGA+AGG 0.712399 1_3:+34284761 Msa0115410:CDS
TTGCTTAAAGAGAGACCAAG+GGG 0.714060 1_3:-34287052 None:intergenic
CATTCAAGGACAATGTAGCG+AGG 0.714076 1_3:+34286427 Msa0115410:CDS
AAGTGGGGTGGACTTAAGGG+TGG 0.714266 1_3:+34287712 Msa0115410:CDS
ATTTCCTTCTGCAGCCACCG+TGG 0.736364 1_3:-34286403 None:intergenic
ACATTAGGAAGCACACACAG+GGG 0.765019 1_3:-34281425 None:intergenic
ACTGGCAGTGGATTCCACGG+TGG 0.777092 1_3:+34286389 Msa0115410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATATTTAATTTGATAG+CGG + chr1_3:34281833-34281852 Msa0115410:intron 10.0%
!!! GTTTTCTTTAATAATTTATT+TGG + chr1_3:34283659-34283678 Msa0115410:intron 10.0%
!!! AAAAAATATATAAAGCATTA+AGG - chr1_3:34285599-34285618 None:intergenic 10.0%
!! TAAAAGTTATTATCTAACTT+TGG + chr1_3:34281800-34281819 Msa0115410:intron 15.0%
!!! AAAAGAGTTAATGAAAATTT+TGG - chr1_3:34282353-34282372 None:intergenic 15.0%
!! TAAGAAACTTAAAAGAAAAA+AGG - chr1_3:34282767-34282786 None:intergenic 15.0%
!!! TTTTCATTAAAATGATTTTG+TGG + chr1_3:34283295-34283314 Msa0115410:intron 15.0%
!! TGAAATCTAATTTAATCATT+TGG + chr1_3:34283431-34283450 Msa0115410:intron 15.0%
!! TTTCTTCTATATAAATTTCT+AGG + chr1_3:34283694-34283713 Msa0115410:intron 15.0%
!! AAAAAAATATGAAAGAAAAG+AGG - chr1_3:34284235-34284254 None:intergenic 15.0%
!!! TAATTCCTTTTTATTTTCTA+TGG + chr1_3:34284380-34284399 Msa0115410:intron 15.0%
!! CAATGATTAATAACTATAAA+GGG - chr1_3:34284575-34284594 None:intergenic 15.0%
!! AGAAACATAAGATAATAAAT+AGG - chr1_3:34284801-34284820 None:intergenic 15.0%
!!! TTTTTAAAGATACTACTATT+AGG - chr1_3:34285302-34285321 None:intergenic 15.0%
!!! CTTTTTATTTTGAAAATGTT+AGG + chr1_3:34285987-34286006 Msa0115410:intron 15.0%
!!! ATAACTATTTCATTTTTGTT+AGG - chr1_3:34286725-34286744 None:intergenic 15.0%
!! TATAATGCTACAAATATTAT+TGG - chr1_3:34287222-34287241 None:intergenic 15.0%
!! AACAAAAATAATTCAGAATA+GGG - chr1_3:34287888-34287907 None:intergenic 15.0%
!! AAACAAAAATAATTCAGAAT+AGG - chr1_3:34287889-34287908 None:intergenic 15.0%
!! TTACGCAAATATTTATATAT+AGG + chr1_3:34287970-34287989 Msa0115410:three_prime_UTR 15.0%
!! AAGAAAGTTATATTCATTAC+CGG + chr1_3:34281865-34281884 Msa0115410:CDS 20.0%
!!! TAGCAATTTTGTAAATTTGA+GGG - chr1_3:34282069-34282088 None:intergenic 20.0%
!!! ATAGCAATTTTGTAAATTTG+AGG - chr1_3:34282070-34282089 None:intergenic 20.0%
!!! TGATACATTTTTAGTAAAGA+TGG + chr1_3:34282235-34282254 Msa0115410:intron 20.0%
!!! AAACAATCTGAATTTTGATT+TGG + chr1_3:34283505-34283524 Msa0115410:intron 20.0%
!! AACATTATCATTATCATCAT+CGG + chr1_3:34283920-34283939 Msa0115410:intron 20.0%
!! TATTTCTCACTTAAAAGAAA+AGG - chr1_3:34284317-34284336 None:intergenic 20.0%
!! CCAATGATTAATAACTATAA+AGG - chr1_3:34284576-34284595 None:intergenic 20.0%
!! CCTTTATAGTTATTAATCAT+TGG + chr1_3:34284573-34284592 Msa0115410:intron 20.0%
!! CAAGTTCATTATTTCATTAA+TGG + chr1_3:34284645-34284664 Msa0115410:intron 20.0%
!!! ACCATATTTTTAGTTCAATA+CGG - chr1_3:34284937-34284956 None:intergenic 20.0%
!! TTCATTCCATTTATTGAATT+TGG + chr1_3:34285217-34285236 Msa0115410:intron 20.0%
!! ATAGATCCAAATTCAATAAA+TGG - chr1_3:34285226-34285245 None:intergenic 20.0%
!! ATAATCTTAACAAGTTTACA+AGG - chr1_3:34285797-34285816 None:intergenic 20.0%
!!! TGTAAACTTGTTAAGATTAT+CGG + chr1_3:34285797-34285816 Msa0115410:intron 20.0%
!!! AGTAAAAGTAATTTGATAGT+TGG + chr1_3:34285873-34285892 Msa0115410:intron 20.0%
!! TGAAAACTATAAACTAAACT+TGG + chr1_3:34285898-34285917 Msa0115410:intron 20.0%
!!! TTATTTTGAAAATGTTAGGA+TGG + chr1_3:34285991-34286010 Msa0115410:intron 20.0%
!! AGATGAAAAGAAGAAAAATA+TGG + chr1_3:34286599-34286618 Msa0115410:intron 20.0%
!!! TGATCAATATTTACTTTTGT+AGG + chr1_3:34286927-34286946 Msa0115410:intron 20.0%
!! GTTTATGTAATATATGTTCT+AGG - chr1_3:34287115-34287134 None:intergenic 20.0%
!! ATTATAAAAGATAGATTCTG+TGG + chr1_3:34287236-34287255 Msa0115410:intron 20.0%
!! AATTTGATCAAATATCAATC+AGG - chr1_3:34287283-34287302 None:intergenic 20.0%
!! ATTAATGTGAGAAAAGAAAA+AGG - chr1_3:34287324-34287343 None:intergenic 20.0%
!! ATAAGTGAAAATTCTTTCTT+AGG - chr1_3:34287465-34287484 None:intergenic 20.0%
! CTATAACGATGATTTACTAA+GGG - chr1_3:34282015-34282034 None:intergenic 25.0%
! ACTATAACGATGATTTACTA+AGG - chr1_3:34282016-34282035 None:intergenic 25.0%
!! ATTGACGTTCTTTGATTTAT+GGG + chr1_3:34282268-34282287 Msa0115410:intron 25.0%
!! TTTTGGTCCTCAAAATTTTA+GGG - chr1_3:34282336-34282355 None:intergenic 25.0%
!!! ATTTTGGTCCTCAAAATTTT+AGG - chr1_3:34282337-34282356 None:intergenic 25.0%
! ATACAAGATCTTTACTTAGA+AGG + chr1_3:34282630-34282649 Msa0115410:intron 25.0%
! TACAAGATCTTTACTTAGAA+GGG + chr1_3:34282631-34282650 Msa0115410:intron 25.0%
! TCTATTTACCATCCTTTATT+TGG + chr1_3:34282686-34282705 Msa0115410:intron 25.0%
! GTTATCTATCTTCCAAATAA+AGG - chr1_3:34282701-34282720 None:intergenic 25.0%
! ATGATTCAAATTGATAGAGT+AGG + chr1_3:34283166-34283185 Msa0115410:intron 25.0%
!!! TTTATATGCTTTTCAAGTCT+TGG + chr1_3:34283212-34283231 Msa0115410:intron 25.0%
!! TTTTTACAATCTTCTATACC+GGG - chr1_3:34283329-34283348 None:intergenic 25.0%
!! GTTTTTACAATCTTCTATAC+CGG - chr1_3:34283330-34283349 None:intergenic 25.0%
!! TAATCAATTTTGGATGCTAT+TGG - chr1_3:34283352-34283371 None:intergenic 25.0%
!! AAGTGAGAGTTAATCAATTT+TGG - chr1_3:34283362-34283381 None:intergenic 25.0%
! ATACATTAAGTGATCGAATT+CGG - chr1_3:34283471-34283490 None:intergenic 25.0%
!!! AGCATTATTCCACTATTTTT+GGG - chr1_3:34283566-34283585 None:intergenic 25.0%
!! AAGCATTATTCCACTATTTT+TGG - chr1_3:34283567-34283586 None:intergenic 25.0%
! ATTATGCACGATTATTTGTA+TGG + chr1_3:34283983-34284002 Msa0115410:intron 25.0%
! CCAAACCATAGAAAATAAAA+AGG - chr1_3:34284388-34284407 None:intergenic 25.0%
!!! CCTTTTTATTTTCTATGGTT+TGG + chr1_3:34284385-34284404 Msa0115410:intron 25.0%
! TTATGACAAGTGGATAAAAA+TGG - chr1_3:34284414-34284433 None:intergenic 25.0%
! AATAATGAACTTGAATGCTT+TGG - chr1_3:34284638-34284657 None:intergenic 25.0%
! TTATCTTATGTTTCTTCTTG+AGG + chr1_3:34284806-34284825 Msa0115410:intron 25.0%
! CATTTCTTGTAAATAAGAGA+CGG - chr1_3:34284865-34284884 None:intergenic 25.0%
! ACCGTATTGAACTAAAAATA+TGG + chr1_3:34284933-34284952 Msa0115410:intron 25.0%
!!! TATTGAGCTCTTATTTTCTA+AGG - chr1_3:34285645-34285664 None:intergenic 25.0%
! TGACATTACTTCTTAAATTC+TGG + chr1_3:34285733-34285752 Msa0115410:intron 25.0%
!! CTTAAATTCTGGTTAAAATG+TGG + chr1_3:34285744-34285763 Msa0115410:intron 25.0%
! GAAACAGATTTATAAGACTT+TGG - chr1_3:34285938-34285957 None:intergenic 25.0%
! TAACATGAATACAACTTTCT+GGG - chr1_3:34286682-34286701 None:intergenic 25.0%
! AACTTCATACACTAAAATGT+TGG + chr1_3:34287132-34287151 Msa0115410:intron 25.0%
!!! AGAAAAAGGTGTTTAGTATT+TGG - chr1_3:34287310-34287329 None:intergenic 25.0%
! TGCTTATTATACTTGGTTAA+GGG - chr1_3:34287395-34287414 None:intergenic 25.0%
! ATGCTTATTATACTTGGTTA+AGG - chr1_3:34287396-34287415 None:intergenic 25.0%
! TGGAATATGCTTATTATACT+TGG - chr1_3:34287402-34287421 None:intergenic 25.0%
!! AGAATTTTCACTTATGATGT+TGG + chr1_3:34287470-34287489 Msa0115410:intron 25.0%
! CTGTCTCTAATATAATTACA+AGG - chr1_3:34287503-34287522 None:intergenic 25.0%
!!! TAGTTTTACATTACAGAAGT+TGG - chr1_3:34287915-34287934 None:intergenic 25.0%
AATAGGGTTTATTGGATTTG+AGG - chr1_3:34281565-34281584 None:intergenic 30.0%
!! TTTAATTTGATAGCGGCTAT+TGG + chr1_3:34281840-34281859 Msa0115410:intron 30.0%
!! TTAATTTGATAGCGGCTATT+GGG + chr1_3:34281841-34281860 Msa0115410:intron 30.0%
! AATTTTCTCACCATGTTCAT+CGG - chr1_3:34281893-34281912 None:intergenic 30.0%
TGATTTACTAAGGGATGAAA+TGG - chr1_3:34282006-34282025 None:intergenic 30.0%
ATTTACCATCACAAGTTTAG+AGG + chr1_3:34282136-34282155 Msa0115410:intron 30.0%
GTATCAAAAGTTCAAAACCA+CGG - chr1_3:34282221-34282240 None:intergenic 30.0%
! GATTGACGTTCTTTGATTTA+TGG + chr1_3:34282267-34282286 Msa0115410:intron 30.0%
! AGAACTATTTGAAGTTCTAG+AGG - chr1_3:34282669-34282688 None:intergenic 30.0%
TCTATCTTCCAAATAAAGGA+TGG - chr1_3:34282697-34282716 None:intergenic 30.0%
!! AATGTATTGCTATTTGATGC+AGG + chr1_3:34282813-34282832 Msa0115410:intron 30.0%
GTCAAAATATCAGAAGTCAT+TGG + chr1_3:34282924-34282943 Msa0115410:CDS 30.0%
AAAATATCAGAAGTCATTGG+AGG + chr1_3:34282927-34282946 Msa0115410:CDS 30.0%
GTAAGAAATGTAACAGATAG+AGG - chr1_3:34283057-34283076 None:intergenic 30.0%
!!! GCATTATTCCACTATTTTTG+GGG - chr1_3:34283565-34283584 None:intergenic 30.0%
! TAAATTTCTAGGTTCAAACC+TGG + chr1_3:34283705-34283724 Msa0115410:intron 30.0%
AGACTCAGACTATATATGTA+TGG + chr1_3:34283801-34283820 Msa0115410:CDS 30.0%
TATGGTTTGATGCTTTACTA+GGG + chr1_3:34283819-34283838 Msa0115410:CDS 30.0%
TGTTCAACAAGAGTTTAGTA+AGG - chr1_3:34284080-34284099 None:intergenic 30.0%
!! GTTGTACTCATAACTTGTTA+AGG + chr1_3:34284344-34284363 Msa0115410:intron 30.0%
!! TCATAACTTGTTAAGGTAGA+AGG + chr1_3:34284351-34284370 Msa0115410:intron 30.0%
TAAGAGAGAATTATGACAAG+TGG - chr1_3:34284424-34284443 None:intergenic 30.0%
! ATAGCCTTTTCCTAGTATTT+GGG - chr1_3:34284455-34284474 None:intergenic 30.0%
! CACAAAAATACAGATGGATT+TGG - chr1_3:34284538-34284557 None:intergenic 30.0%
!! ATCCATCTGTATTTTTGTGA+TGG + chr1_3:34284539-34284558 Msa0115410:intron 30.0%
AACCATCACAAAAATACAGA+TGG - chr1_3:34284544-34284563 None:intergenic 30.0%
!!! TAATGGTTTTGTTACTCTGT+AGG + chr1_3:34284662-34284681 Msa0115410:intron 30.0%
ATTTACAAGAAATGCTGAGT+AGG + chr1_3:34284871-34284890 Msa0115410:intron 30.0%
TTTACAGACATATGAGAGAT+TGG - chr1_3:34285191-34285210 None:intergenic 30.0%
! GGAATACATTTGAAGCATTA+CGG - chr1_3:34285624-34285643 None:intergenic 30.0%
!! ATAAAACTTGCTAACACTGT+TGG - chr1_3:34285676-34285695 None:intergenic 30.0%
TAATGTCATGATGTAGAAGA+TGG - chr1_3:34285721-34285740 None:intergenic 30.0%
! ATTCTGGTTAAAATGTGGTT+AGG + chr1_3:34285749-34285768 Msa0115410:intron 30.0%
! TTCTGGTTAAAATGTGGTTA+GGG + chr1_3:34285750-34285769 Msa0115410:intron 30.0%
AACTTACTAACCAAATCGTT+TGG - chr1_3:34286054-34286073 None:intergenic 30.0%
!! AACGATTTGGTTAGTAAGTT+TGG + chr1_3:34286054-34286073 Msa0115410:CDS 30.0%
!! ACGATTTGGTTAGTAAGTTT+GGG + chr1_3:34286055-34286074 Msa0115410:CDS 30.0%
TGTTACAAGCAATGAAAGTA+AGG - chr1_3:34286239-34286258 None:intergenic 30.0%
! CAAAACCTCTTTCACTATTT+TGG + chr1_3:34286311-34286330 Msa0115410:intron 30.0%
AATCTTCTTAATAGGACTCT+AGG + chr1_3:34286339-34286358 Msa0115410:CDS 30.0%
TCTGTTTAGATTGTCTTATC+CGG - chr1_3:34286582-34286601 None:intergenic 30.0%
! CAACTTAGATAGATCGTTTT+AGG + chr1_3:34286626-34286645 Msa0115410:intron 30.0%
GTAACATGAATACAACTTTC+TGG - chr1_3:34286683-34286702 None:intergenic 30.0%
ATTACAGAAACACAATCCAA+GGG - chr1_3:34286831-34286850 None:intergenic 30.0%
AATTACAGAAACACAATCCA+AGG - chr1_3:34286832-34286851 None:intergenic 30.0%
TATCTACAATGGTTGAAAGA+TGG - chr1_3:34286877-34286896 None:intergenic 30.0%
AACCATTGTAGATAAGTTGT+GGG + chr1_3:34286883-34286902 Msa0115410:intron 30.0%
TAATGCTGGTAATTCCTATA+TGG + chr1_3:34287020-34287039 Msa0115410:CDS 30.0%
TCAATCAGGTAAAGATTTAG+TGG - chr1_3:34287269-34287288 None:intergenic 30.0%
AAACGAAAAGAAGTGACATA+TGG - chr1_3:34287422-34287441 None:intergenic 30.0%
!! ATATGTCACTTCTTTTCGTT+TGG + chr1_3:34287421-34287440 Msa0115410:intron 30.0%
!! TATGTCACTTCTTTTCGTTT+GGG + chr1_3:34287422-34287441 Msa0115410:intron 30.0%
! TTTTCAATCCTAGCAAAGAT+TGG - chr1_3:34287760-34287779 None:intergenic 30.0%
GATTGAAAATCAAACTGAAG+TGG + chr1_3:34287771-34287790 Msa0115410:CDS 30.0%
! AAGAAGACTCTGAAAAGTAA+AGG + chr1_3:34287817-34287836 Msa0115410:CDS 30.0%
! AGAAGACTCTGAAAAGTAAA+GGG + chr1_3:34287818-34287837 Msa0115410:CDS 30.0%
AGGAACATAGTACATATGTA+TGG + chr1_3:34287990-34288009 Msa0115410:three_prime_UTR 30.0%
!! CTTTTTGAGAATAAAGTTCG+TGG + chr1_3:34288041-34288060 Msa0115410:three_prime_UTR 30.0%
ATTGGAACGAAGTGAAAGAA+TGG - chr1_3:34281534-34281553 None:intergenic 35.0%
GAGATGGAAATAGGGTTTAT+TGG - chr1_3:34281573-34281592 None:intergenic 35.0%
TACCTATTATCTAACTTCCG+TGG + chr1_3:34281753-34281772 Msa0115410:intron 35.0%
ACCTATTATCTAACTTCCGT+GGG + chr1_3:34281754-34281773 Msa0115410:intron 35.0%
CTTGTGAAATGAGATTGCAA+TGG - chr1_3:34281954-34281973 None:intergenic 35.0%
TTTGAGGGACTAAATTGATG+AGG - chr1_3:34282054-34282073 None:intergenic 35.0%
TAGAACCTCTAAACTTGTGA+TGG - chr1_3:34282144-34282163 None:intergenic 35.0%
GGCTACTCAAGTAAAACATT+AGG + chr1_3:34282190-34282209 Msa0115410:intron 35.0%
TAAAACATTAGGTCTTTCCG+TGG + chr1_3:34282201-34282220 Msa0115410:intron 35.0%
!! TTTGCTGTTTCGTAAAATCG+AGG + chr1_3:34282296-34282315 Msa0115410:intron 35.0%
!!! AATTTTAGGGTGGAGCAATT+TGG - chr1_3:34282323-34282342 None:intergenic 35.0%
ATTTACCGAGCTGATTATGA+GGG + chr1_3:34282518-34282537 Msa0115410:CDS 35.0%
AAATTCCCTCATAATCAGCT+CGG - chr1_3:34282526-34282545 None:intergenic 35.0%
AATTTATTGTGTCAGCTGTG+AGG + chr1_3:34282541-34282560 Msa0115410:CDS 35.0%
!!! AAGGTGATAGTTTTAACTCG+AGG + chr1_3:34282569-34282588 Msa0115410:intron 35.0%
ATTCCTTTACCTCGTGTAAA+CGG - chr1_3:34282993-34283012 None:intergenic 35.0%
TTACACGAGGTAAAGGAATA+TGG + chr1_3:34282994-34283013 Msa0115410:intron 35.0%
CTTACATACTGCAATTCAAG+CGG + chr1_3:34283072-34283091 Msa0115410:intron 35.0%
TTACATACTGCAATTCAAGC+GGG + chr1_3:34283073-34283092 Msa0115410:intron 35.0%
TATGTAGTTACACGACCTTA+AGG - chr1_3:34283274-34283293 None:intergenic 35.0%
TTAAGTGATCGAATTCGGAT+TGG - chr1_3:34283466-34283485 None:intergenic 35.0%
TCGTGAAATACCTATATCAC+AGG - chr1_3:34283603-34283622 None:intergenic 35.0%
AACTGCATATCATCTCTTTC+AGG + chr1_3:34283622-34283641 Msa0115410:intron 35.0%
TCTTTCAGGAGAACTTCAAA+TGG + chr1_3:34283636-34283655 Msa0115410:intron 35.0%
CTTTCAGGAGAACTTCAAAT+GGG + chr1_3:34283637-34283656 Msa0115410:intron 35.0%
GTATGGTTTGATGCTTTACT+AGG + chr1_3:34283818-34283837 Msa0115410:CDS 35.0%
AAGCTAATAGAATAGAGCCA+GGG - chr1_3:34283887-34283906 None:intergenic 35.0%
AAAGCTAATAGAATAGAGCC+AGG - chr1_3:34283888-34283907 None:intergenic 35.0%
AGCTGCACATACAAAAAGAA+AGG - chr1_3:34284112-34284131 None:intergenic 35.0%
GAAACGGTGTTTAGTAAATC+AGG - chr1_3:34284167-34284186 None:intergenic 35.0%
TTACTAAACACCGTTTCTTC+AGG + chr1_3:34284170-34284189 Msa0115410:CDS 35.0%
TATAGTCAACCCCAAATACT+AGG + chr1_3:34284442-34284461 Msa0115410:intron 35.0%
! TAGCCTTTTCCTAGTATTTG+GGG - chr1_3:34284454-34284473 None:intergenic 35.0%
! GATAGCCTTTTCCTAGTATT+TGG - chr1_3:34284456-34284475 None:intergenic 35.0%
AGTCAAAATCTCGTTCTACT+CGG + chr1_3:34284486-34284505 Msa0115410:intron 35.0%
!! TTGACGAAGGTATTAGTACT+CGG + chr1_3:34284774-34284793 Msa0115410:intron 35.0%
!!! AGTTCACAATGGTTTTGGTT+TGG - chr1_3:34285019-34285038 None:intergenic 35.0%
! TGTACAGTTCACAATGGTTT+TGG - chr1_3:34285024-34285043 None:intergenic 35.0%
TGCATGATTGAAAACTGAAG+TGG - chr1_3:34285068-34285087 None:intergenic 35.0%
! ACTTCAGTTTTCAATCATGC+AGG + chr1_3:34285067-34285086 Msa0115410:intron 35.0%
AATAAAACGAGAATGCTGCT+CGG + chr1_3:34285157-34285176 Msa0115410:intron 35.0%
AGACATATGAGAGATTGGAA+TGG - chr1_3:34285186-34285205 None:intergenic 35.0%
ATGTTAGGATGGTATGAAGA+TGG + chr1_3:34286002-34286021 Msa0115410:intron 35.0%
TGTTAGGATGGTATGAAGAT+GGG + chr1_3:34286003-34286022 Msa0115410:intron 35.0%
! GCTCAAAGTACCAATTGTAT+TGG - chr1_3:34286181-34286200 None:intergenic 35.0%
TGTTACAAGCAATGAAAGCA+AGG - chr1_3:34286203-34286222 None:intergenic 35.0%
TGGCAGGAAATCTTCTTAAT+AGG + chr1_3:34286331-34286350 Msa0115410:intron 35.0%
CAACCATTGTAGATAAGTTG+TGG + chr1_3:34286882-34286901 Msa0115410:intron 35.0%
TTGATCAACCTTTGTGTTAC+AGG - chr1_3:34286914-34286933 None:intergenic 35.0%
!! TATGTTCTAGGAGAATACCT+TGG - chr1_3:34287103-34287122 None:intergenic 35.0%
TATATTCTCGAACTCAAGCT+CGG - chr1_3:34287561-34287580 None:intergenic 35.0%
ATTGTAGAGAGATACCAAGT+GGG + chr1_3:34287696-34287715 Msa0115410:intron 35.0%
AAACTGAAGTGGAAGACAAA+GGG + chr1_3:34287782-34287801 Msa0115410:CDS 35.0%
AAACAAGCTCAAGAAGTTGT+TGG + chr1_3:34287847-34287866 Msa0115410:CDS 35.0%
AATCAGCTGGATGCATCTAA+GGG + chr1_3:34281394-34281413 Msa0115410:five_prime_UTR 40.0%
! AACATTAGGAAGCACACACA+GGG - chr1_3:34281429-34281448 None:intergenic 40.0%
! TAACATTAGGAAGCACACAC+AGG - chr1_3:34281430-34281449 None:intergenic 40.0%
GTGCTTCCTAATGTTATCTG+CGG + chr1_3:34281434-34281453 Msa0115410:five_prime_UTR 40.0%
TGCTTCCTAATGTTATCTGC+GGG + chr1_3:34281435-34281454 Msa0115410:five_prime_UTR 40.0%
TCTTTCCCGCAGATAACATT+AGG - chr1_3:34281443-34281462 None:intergenic 40.0%
TGTTATCTGCGGGAAAGAAA+CGG + chr1_3:34281445-34281464 Msa0115410:five_prime_UTR 40.0%
AGGAGGCAGCATCAAAAAAA+TGG + chr1_3:34281472-34281491 Msa0115410:exon 40.0%
! GGATTTGAGGTGAGAAACAT+TGG - chr1_3:34281552-34281571 None:intergenic 40.0%
GAAGAAGGGAGATGGAAATA+GGG - chr1_3:34281581-34281600 None:intergenic 40.0%
AGAAGAAGGGAGATGGAAAT+AGG - chr1_3:34281582-34281601 None:intergenic 40.0%
TTCGTCATCATTTGAGGAAG+TGG - chr1_3:34281633-34281652 None:intergenic 40.0%
ACCCACGGAAGTTAGATAAT+AGG - chr1_3:34281758-34281777 None:intergenic 40.0%
GAAGAAACCAAACAAACCCA+CGG - chr1_3:34281773-34281792 None:intergenic 40.0%
!! GTTTTGATGCAGCAAGAGAT+CGG + chr1_3:34282169-34282188 Msa0115410:intron 40.0%
! TGCTCCACCCTAAAATTTTG+AGG + chr1_3:34282326-34282345 Msa0115410:intron 40.0%
!! TGGTCCTCAAAATTTTAGGG+TGG - chr1_3:34282333-34282352 None:intergenic 40.0%
CAAGCATGAAGCAATTGTGA+AGG + chr1_3:34282463-34282482 Msa0115410:CDS 40.0%
CATTTACCGAGCTGATTATG+AGG + chr1_3:34282517-34282536 Msa0115410:CDS 40.0%
TGTCAGCTGTGAGGAATATA+AGG + chr1_3:34282550-34282569 Msa0115410:CDS 40.0%
CTATTTGATGCAGGATGAGA+AGG + chr1_3:34282822-34282841 Msa0115410:intron 40.0%
TTGAAACACAAGGCTTAAGG+TGG - chr1_3:34282876-34282895 None:intergenic 40.0%
! ACCTTAAGCCTTGTGTTTCA+AGG + chr1_3:34282875-34282894 Msa0115410:CDS 40.0%
TCCTTGAAACACAAGGCTTA+AGG - chr1_3:34282879-34282898 None:intergenic 40.0%
TCCTCTTTCCTTGAAACACA+AGG - chr1_3:34282886-34282905 None:intergenic 40.0%
AAAGATGGCTGCACAAAGTT+TGG - chr1_3:34282970-34282989 None:intergenic 40.0%
TTTCCGTTTACACGAGGTAA+AGG + chr1_3:34282987-34283006 Msa0115410:intron 40.0%
TGAACAGTCTCTAGTGAATG+TGG - chr1_3:34283132-34283151 None:intergenic 40.0%
! GATTTTGTGGTCATACATCC+CGG + chr1_3:34283308-34283327 Msa0115410:intron 40.0%
! CTTTTTCTGTCTTCCCTTGT+CGG + chr1_3:34283379-34283398 Msa0115410:intron 40.0%
TAAAACAAGCCTACCGACAA+GGG - chr1_3:34283395-34283414 None:intergenic 40.0%
ATAAAACAAGCCTACCGACA+AGG - chr1_3:34283396-34283415 None:intergenic 40.0%
!! ATTTTTGGGGAAGCATGCAT+GGG - chr1_3:34283552-34283571 None:intergenic 40.0%
!!! TATTTTTGGGGAAGCATGCA+TGG - chr1_3:34283553-34283572 None:intergenic 40.0%
AGCAGTTTCACCTGTGATAT+AGG + chr1_3:34283590-34283609 Msa0115410:intron 40.0%
GTTCAAACCTGGATCAATAG+TGG + chr1_3:34283716-34283735 Msa0115410:CDS 40.0%
! ATAGTCTGAGTCTTGTCACT+CGG - chr1_3:34283794-34283813 None:intergenic 40.0%
! TTAGTAAATCAGGTTGCTCC+TGG - chr1_3:34284157-34284176 None:intergenic 40.0%
TAAACACCGTTTCTTCAGGT+TGG + chr1_3:34284174-34284193 Msa0115410:CDS 40.0%
TACACTGCACTTGATTGGTA+AGG + chr1_3:34284202-34284221 Msa0115410:CDS 40.0%
CAACCCCAAATACTAGGAAA+AGG + chr1_3:34284448-34284467 Msa0115410:intron 40.0%
! TACGTTTCCATGCCGTTTAT+TGG + chr1_3:34284691-34284710 Msa0115410:CDS 40.0%
TAGCATAGCTGGCCAATAAA+CGG - chr1_3:34284706-34284725 None:intergenic 40.0%
AGCCTTCCCAAAATGGTATA+CGG + chr1_3:34284741-34284760 Msa0115410:CDS 40.0%
ATACCTTCGTCAAGAATCCA+TGG - chr1_3:34284767-34284786 None:intergenic 40.0%
!! TGACGAAGGTATTAGTACTC+GGG + chr1_3:34284775-34284794 Msa0115410:intron 40.0%
!! GTTTGGTGTACAGTTCACAA+TGG - chr1_3:34285030-34285049 None:intergenic 40.0%
GAAGTGGTAATTGAGCAGTT+CGG - chr1_3:34285052-34285071 None:intergenic 40.0%
! TCCTGAACTTTGAAGGAAAC+TGG + chr1_3:34285359-34285378 Msa0115410:intron 40.0%
! CCTGAACTTTGAAGGAAACT+GGG + chr1_3:34285360-34285379 Msa0115410:intron 40.0%
TCACTGCTTCTTTGTTGCAT+TGG + chr1_3:34285502-34285521 Msa0115410:intron 40.0%
! TGAAAGCATGTCAATCCAAG+TGG - chr1_3:34285528-34285547 None:intergenic 40.0%
ACTTGGATTGACATGCTTTC+AGG + chr1_3:34285527-34285546 Msa0115410:intron 40.0%
TTGACATGCTTTCAGGCTAT+TGG + chr1_3:34285534-34285553 Msa0115410:intron 40.0%
TGGTTAAAATGTGGTTAGGG+TGG + chr1_3:34285753-34285772 Msa0115410:intron 40.0%
TTAAAATGTGGTTAGGGTGG+TGG + chr1_3:34285756-34285775 Msa0115410:intron 40.0%
! TTAGGGTGGTGGTATATGAT+TGG + chr1_3:34285767-34285786 Msa0115410:intron 40.0%
! AGACTTTGGTTAGTCACAGA+AGG - chr1_3:34285924-34285943 None:intergenic 40.0%
TACGCTTGAACCAAACGATT+TGG + chr1_3:34286041-34286060 Msa0115410:CDS 40.0%
TAGATACTTCTTCCTCAGAG+AGG + chr1_3:34286089-34286108 Msa0115410:CDS 40.0%
AGGTGGAATTTGGCAATGAT+GGG + chr1_3:34286109-34286128 Msa0115410:CDS 40.0%
GCACATCTTGCCAATACAAT+TGG + chr1_3:34286168-34286187 Msa0115410:CDS 40.0%
!!! ACCTCTTTCACTATTTTGGC+AGG + chr1_3:34286315-34286334 Msa0115410:intron 40.0%
TCCTGCCAAAATAGTGAAAG+AGG - chr1_3:34286319-34286338 None:intergenic 40.0%
AAAGAACTGCCAATCAACAC+TGG + chr1_3:34286371-34286390 Msa0115410:CDS 40.0%
TGCAGAAGGAAATGCATTCA+AGG + chr1_3:34286413-34286432 Msa0115410:CDS 40.0%
TAACCTCAAACTGCTGCATA+AGG - chr1_3:34286513-34286532 None:intergenic 40.0%
GTTTAGATTGTCTTATCCGG+TGG - chr1_3:34286579-34286598 None:intergenic 40.0%
TGAATACAACTTTCTGGGCA+GGG - chr1_3:34286677-34286696 None:intergenic 40.0%
ATGAATACAACTTTCTGGGC+AGG - chr1_3:34286678-34286697 None:intergenic 40.0%
CTCCCACAACTTATCTACAA+TGG - chr1_3:34286888-34286907 None:intergenic 40.0%
TTGCTTAAAGAGAGACCAAG+GGG - chr1_3:34287055-34287074 None:intergenic 40.0%
CTTGCTTAAAGAGAGACCAA+GGG - chr1_3:34287056-34287075 None:intergenic 40.0%
TTCACTTATGATGTTGGAGC+AGG + chr1_3:34287476-34287495 Msa0115410:intron 40.0%
AGTAACAGGAGATAGTGCAA+TGG - chr1_3:34287538-34287557 None:intergenic 40.0%
TCGAGAATATATGCACAGCT+TGG + chr1_3:34287570-34287589 Msa0115410:CDS 40.0%
TAAGATAGAGAGAGATACCC+AGG - chr1_3:34287625-34287644 None:intergenic 40.0%
CATTGTAGAGAGATACCAAG+TGG + chr1_3:34287695-34287714 Msa0115410:intron 40.0%
TTGTAGAGAGATACCAAGTG+GGG + chr1_3:34287697-34287716 Msa0115410:intron 40.0%
AACCTCAACCAATCTTTGCT+AGG + chr1_3:34287749-34287768 Msa0115410:CDS 40.0%
! ATCCTAGCAAAGATTGGTTG+AGG - chr1_3:34287754-34287773 None:intergenic 40.0%
CAAACTGAAGTGGAAGACAA+AGG + chr1_3:34287781-34287800 Msa0115410:CDS 40.0%
AACTGAAGTGGAAGACAAAG+GGG + chr1_3:34287783-34287802 Msa0115410:CDS 40.0%
GAATCAGCTGGATGCATCTA+AGG + chr1_3:34281393-34281412 Msa0115410:five_prime_UTR 45.0%
! ACATTAGGAAGCACACACAG+GGG - chr1_3:34281428-34281447 None:intergenic 45.0%
GTAGGGTTCGTCATCATTTG+AGG - chr1_3:34281639-34281658 None:intergenic 45.0%
GGCGTTAACGTAGTAAAGAG+GGG - chr1_3:34281672-34281691 None:intergenic 45.0%
GGGCGTTAACGTAGTAAAGA+GGG - chr1_3:34281673-34281692 None:intergenic 45.0%
! CTAACTTCCGTGGGTTTGTT+TGG + chr1_3:34281763-34281782 Msa0115410:intron 45.0%
TGAGATTGCAATGGTCCGTA+GGG - chr1_3:34281945-34281964 None:intergenic 45.0%
ATGAGATTGCAATGGTCCGT+AGG - chr1_3:34281946-34281965 None:intergenic 45.0%
CACAAGCTTACAAGACGCTT+TGG + chr1_3:34281968-34281987 Msa0115410:intron 45.0%
GACAGACACTGTTGCGTTAA+GGG - chr1_3:34282098-34282117 None:intergenic 45.0%
!! TATTCGAGAGTGCTTGCCAA+TGG + chr1_3:34282491-34282510 Msa0115410:CDS 45.0%
AGCTCGGTAAATGTCACCAT+TGG - chr1_3:34282510-34282529 None:intergenic 45.0%
ACTGCCTCTCAATCTGATGA+TGG + chr1_3:34282719-34282738 Msa0115410:intron 45.0%
CTGCCTCTCAATCTGATGAT+GGG + chr1_3:34282720-34282739 Msa0115410:intron 45.0%
TCTCCCATCATCAGATTGAG+AGG - chr1_3:34282726-34282745 None:intergenic 45.0%
ACACAAGGCTTAAGGTGGAT+CGG - chr1_3:34282871-34282890 None:intergenic 45.0%
GCCTTGTGTTTCAAGGAAAG+AGG + chr1_3:34282882-34282901 Msa0115410:CDS 45.0%
ACCTCGTGTAAACGGAAAGA+TGG - chr1_3:34282985-34283004 None:intergenic 45.0%
!! CTTAAGGAGTGCTAACTGGT+TGG - chr1_3:34283258-34283277 None:intergenic 45.0%
CAACCAGTTAGCACTCCTTA+AGG + chr1_3:34283256-34283275 Msa0115410:intron 45.0%
GCATGCTTCCCCAAAAATAG+TGG + chr1_3:34283554-34283573 Msa0115410:intron 45.0%
AACAGGTATGCCCCAATCAA+CGG - chr1_3:34283771-34283790 None:intergenic 45.0%
TGTGCATCTCTAACTTTCCC+TGG + chr1_3:34283867-34283886 Msa0115410:intron 45.0%
TCTACTCGGTAATCTCCATC+TGG + chr1_3:34284500-34284519 Msa0115410:intron 45.0%
TGGTGTGTAAGTACTCCAGA+TGG - chr1_3:34284518-34284537 None:intergenic 45.0%
CAGCTATGCTAATGTCTGCT+GGG + chr1_3:34284715-34284734 Msa0115410:CDS 45.0%
! CCATGGCCGTATACCATTTT+GGG - chr1_3:34284750-34284769 None:intergenic 45.0%
! TCCATGGCCGTATACCATTT+TGG - chr1_3:34284751-34284770 None:intergenic 45.0%
CCTGTTCATGGTTCAGTCAT+GGG + chr1_3:34284894-34284913 Msa0115410:intron 45.0%
AGTTCATCGCACAATTGCAG+CGG - chr1_3:34284979-34284998 None:intergenic 45.0%
GCAATTGTGCGATGAACTGT+CGG + chr1_3:34284981-34285000 Msa0115410:intron 45.0%
GGTAATTGAGCAGTTCGGTT+TGG - chr1_3:34285047-34285066 None:intergenic 45.0%
CAACGACTCCTGAACTTTGA+AGG + chr1_3:34285352-34285371 Msa0115410:intron 45.0%
CCCAGTTTCCTTCAAAGTTC+AGG - chr1_3:34285363-34285382 None:intergenic 45.0%
! TCTTTGTTGCATTGGCCACT+TGG + chr1_3:34285510-34285529 Msa0115410:intron 45.0%
ATGAAGATGGGCAAGTCACT+AGG + chr1_3:34286015-34286034 Msa0115410:CDS 45.0%
ATACTTCTTCCTCAGAGAGG+TGG + chr1_3:34286092-34286111 Msa0115410:CDS 45.0%
TTCCTCAGAGAGGTGGAATT+TGG + chr1_3:34286099-34286118 Msa0115410:CDS 45.0%
GAGGTGGAATTTGGCAATGA+TGG + chr1_3:34286108-34286127 Msa0115410:CDS 45.0%
GGTGGAATTTGGCAATGATG+GGG + chr1_3:34286110-34286129 Msa0115410:CDS 45.0%
! CAATGATGGGGACTATTCAG+AGG + chr1_3:34286122-34286141 Msa0115410:CDS 45.0%
!! AATCCACTGCCAGTGTTGAT+TGG - chr1_3:34286383-34286402 None:intergenic 45.0%
CATTCAAGGACAATGTAGCG+AGG + chr1_3:34286427-34286446 Msa0115410:CDS 45.0%
ATGCCTTATGCAGCAGTTTG+AGG + chr1_3:34286507-34286526 Msa0115410:intron 45.0%
GTGGCAGGTGAATTAAACAC+AGG - chr1_3:34286560-34286579 None:intergenic 45.0%
GTGTTTAATTCACCTGCCAC+CGG + chr1_3:34286560-34286579 Msa0115410:intron 45.0%
GAACAGAACAAACTGACCCT+TGG + chr1_3:34286812-34286831 Msa0115410:intron 45.0%
!! GTTCTGGAGATTGGTAATGC+TGG + chr1_3:34287006-34287025 Msa0115410:CDS 45.0%
CCTTGCTTAAAGAGAGACCA+AGG - chr1_3:34287057-34287076 None:intergenic 45.0%
CCTTGGTCTCTCTTTAAGCA+AGG + chr1_3:34287054-34287073 Msa0115410:CDS 45.0%
TGGTCTCTCTTTAAGCAAGG+AGG + chr1_3:34287057-34287076 Msa0115410:CDS 45.0%
! ACCAATTTGAAGCAGCAACC+TGG + chr1_3:34287604-34287623 Msa0115410:CDS 45.0%
! CCAATTTGAAGCAGCAACCT+GGG + chr1_3:34287605-34287624 Msa0115410:CDS 45.0%
!!! TATCTTTAAAAAATAATTAT+CGG + chr1_3:34285310-34285329 Msa0115410:intron 5.0%
GTCTTGGAGAAGAAGGGAGA+TGG - chr1_3:34281589-34281608 None:intergenic 50.0%
!! GAGCTGGTCTTGGAGAAGAA+GGG - chr1_3:34281595-34281614 None:intergenic 50.0%
!! AGAGCTGGTCTTGGAGAAGA+AGG - chr1_3:34281596-34281615 None:intergenic 50.0%
! TTGCAGAACAGAGCTGGTCT+TGG - chr1_3:34281605-34281624 None:intergenic 50.0%
GAGCATTTGCAGAACAGAGC+TGG - chr1_3:34281611-34281630 None:intergenic 50.0%
! AGAGGGGTTGTGATGACGTA+GGG - chr1_3:34281656-34281675 None:intergenic 50.0%
! AAGAGGGGTTGTGATGACGT+AGG - chr1_3:34281657-34281676 None:intergenic 50.0%
! GGGGCGTTAACGTAGTAAAG+AGG - chr1_3:34281674-34281693 None:intergenic 50.0%
GTTAACGCCCCTCCTCATAT+GGG + chr1_3:34281683-34281702 Msa0115410:CDS 50.0%
AGGTACCTGAAAGCGAGCAA+TGG - chr1_3:34281738-34281757 None:intergenic 50.0%
!! ATTACCGGCACCGATGAACA+TGG + chr1_3:34281880-34281899 Msa0115410:CDS 50.0%
GAAAATTGCAACTGCTGCCG+TGG + chr1_3:34281906-34281925 Msa0115410:CDS 50.0%
GAGATTGCAATGGTCCGTAG+GGG - chr1_3:34281944-34281963 None:intergenic 50.0%
CGACAGACACTGTTGCGTTA+AGG - chr1_3:34282099-34282118 None:intergenic 50.0%
GCCATCTTTCCGTTTACACG+AGG + chr1_3:34282981-34283000 Msa0115410:CDS 50.0%
!! CGACCTTAAGGAGTGCTAAC+TGG - chr1_3:34283262-34283281 None:intergenic 50.0%
TTCTGTCTTCCCTTGTCGGT+AGG + chr1_3:34283383-34283402 Msa0115410:intron 50.0%
CTGGATCAATAGTGGCCTGA+GGG + chr1_3:34283724-34283743 Msa0115410:CDS 50.0%
GGGAAATGGAAAAGTCCCTC+AGG - chr1_3:34283742-34283761 None:intergenic 50.0%
ATCAACGGATGCTCGGGAAA+TGG - chr1_3:34283756-34283775 None:intergenic 50.0%
TTTCCCGAGCATCCGTTGAT+TGG + chr1_3:34283756-34283775 Msa0115410:CDS 50.0%
! TTCCCGAGCATCCGTTGATT+GGG + chr1_3:34283757-34283776 Msa0115410:CDS 50.0%
! TGAGTCTTGTCACTCGGAAC+AGG - chr1_3:34283788-34283807 None:intergenic 50.0%
ATCAGCACTAGCTGATGACC+AGG + chr1_3:34284136-34284155 Msa0115410:CDS 50.0%
AGCTGGCCAACCTGAAGAAA+CGG - chr1_3:34284183-34284202 None:intergenic 50.0%
CCAATCAAGTGCAGTGTAGC+TGG - chr1_3:34284200-34284219 None:intergenic 50.0%
CCAGCTACACTGCACTTGAT+TGG + chr1_3:34284197-34284216 Msa0115410:CDS 50.0%
TAGCTGGCCAATAAACGGCA+TGG - chr1_3:34284701-34284720 None:intergenic 50.0%
CCAGCAGACATTAGCATAGC+TGG - chr1_3:34284717-34284736 None:intergenic 50.0%
CCAGCTATGCTAATGTCTGC+TGG + chr1_3:34284714-34284733 Msa0115410:CDS 50.0%
TGGGCTAAGCCTTCCCAAAA+TGG + chr1_3:34284734-34284753 Msa0115410:CDS 50.0%
!! GGCCGTATACCATTTTGGGA+AGG - chr1_3:34284746-34284765 None:intergenic 50.0%
CCCAAAATGGTATACGGCCA+TGG + chr1_3:34284747-34284766 Msa0115410:CDS 50.0%
ATGCTGAGTAGGCCTGTTCA+TGG + chr1_3:34284882-34284901 Msa0115410:intron 50.0%
GCCTGTTCATGGTTCAGTCA+TGG + chr1_3:34284893-34284912 Msa0115410:intron 50.0%
CCCATGACTGAACCATGAAC+AGG - chr1_3:34284897-34284916 None:intergenic 50.0%
ATCGCACAATTGCAGCGGTT+TGG - chr1_3:34284974-34284993 None:intergenic 50.0%
TCAACCGTGTGCTCAATGCT+AGG - chr1_3:34285562-34285581 None:intergenic 50.0%
TGCCAAATTCCACCTCTCTG+AGG - chr1_3:34286104-34286123 None:intergenic 50.0%
! AACACTGGCAGTGGATTCCA+CGG + chr1_3:34286386-34286405 Msa0115410:CDS 50.0%
TAGCGAGGCTGGTAAAGTCT+AGG + chr1_3:34286442-34286461 Msa0115410:intron 50.0%
AGATTGTCTTATCCGGTGGC+AGG - chr1_3:34286575-34286594 None:intergenic 50.0%
AGCCTCACAAGCTGATGTCA+GGG - chr1_3:34286986-34287005 None:intergenic 50.0%
ATCAGCTTGTGAGGCTGTTC+TGG + chr1_3:34286990-34287009 Msa0115410:CDS 50.0%
!! TGTGAGGCTGTTCTGGAGAT+TGG + chr1_3:34286997-34287016 Msa0115410:CDS 50.0%
GAACTCAAGCTCGGAGTAAC+AGG - chr1_3:34287552-34287571 None:intergenic 50.0%
ATGCACAGCTTGGCTATTCC+AGG + chr1_3:34287580-34287599 Msa0115410:CDS 50.0%
TGCACAGCTTGGCTATTCCA+GGG + chr1_3:34287581-34287600 Msa0115410:CDS 50.0%
! TGCTGCTTCAAATTGGTCCC+TGG - chr1_3:34287601-34287620 None:intergenic 50.0%
! CCCAGGTTGCTGCTTCAAAT+TGG - chr1_3:34287608-34287627 None:intergenic 50.0%
TAGAGAGATACCAAGTGGGG+TGG + chr1_3:34287700-34287719 Msa0115410:intron 50.0%
! TACCAAGTGGGGTGGACTTA+AGG + chr1_3:34287708-34287727 Msa0115410:CDS 50.0%
! ACCAAGTGGGGTGGACTTAA+GGG + chr1_3:34287709-34287728 Msa0115410:CDS 50.0%
! GATTGGTTGAGGTTGAGCCA+TGG - chr1_3:34287743-34287762 None:intergenic 50.0%
GAAGACAAAGGGGTTGCAGT+CGG + chr1_3:34287793-34287812 Msa0115410:CDS 50.0%
TGCGGGAAAGAAACGGCTTG+AGG + chr1_3:34281452-34281471 Msa0115410:five_prime_UTR 55.0%
GGGAAAGAAACGGCTTGAGG+AGG + chr1_3:34281455-34281474 Msa0115410:five_prime_UTR 55.0%
CGTTAACGCCCCTCCTCATA+TGG + chr1_3:34281682-34281701 Msa0115410:CDS 55.0%
! AAGCGCTGCCCATATGAGGA+GGG - chr1_3:34281694-34281713 None:intergenic 55.0%
! TAAGCGCTGCCCATATGAGG+AGG - chr1_3:34281695-34281714 None:intergenic 55.0%
! GAGTAAGCGCTGCCCATATG+AGG - chr1_3:34281698-34281717 None:intergenic 55.0%
CTGAAAGCGAGCAATGGCGT+CGG - chr1_3:34281732-34281751 None:intergenic 55.0%
CTCACCATGTTCATCGGTGC+CGG - chr1_3:34281887-34281906 None:intergenic 55.0%
ATTGCAATGGTCCGTAGGGG+TGG - chr1_3:34281941-34281960 None:intergenic 55.0%
! TTGGGGAAGCATGCATGGGT+GGG - chr1_3:34283548-34283567 None:intergenic 55.0%
! TTTGGGGAAGCATGCATGGG+TGG - chr1_3:34283549-34283568 None:intergenic 55.0%
CCTCAGGCCACTATTGATCC+AGG - chr1_3:34283726-34283745 None:intergenic 55.0%
CCTGGATCAATAGTGGCCTG+AGG + chr1_3:34283723-34283742 Msa0115410:CDS 55.0%
! TCCCGAGCATCCGTTGATTG+GGG + chr1_3:34283758-34283777 Msa0115410:CDS 55.0%
TGCCCCAATCAACGGATGCT+CGG - chr1_3:34283763-34283782 None:intergenic 55.0%
CGGCCATGGATTCTTGACGA+AGG + chr1_3:34284761-34284780 Msa0115410:CDS 55.0%
! GGCACCTAGCATTGAGCACA+CGG + chr1_3:34285555-34285574 Msa0115410:intron 55.0%
CTGCCAATCAACACTGGCAG+TGG + chr1_3:34286377-34286396 Msa0115410:CDS 55.0%
ATTTCCTTCTGCAGCCACCG+TGG - chr1_3:34286406-34286425 None:intergenic 55.0%
CAAGGACAATGTAGCGAGGC+TGG + chr1_3:34286431-34286450 Msa0115410:CDS 55.0%
GGGAGCTGCCTGTAACACAA+AGG + chr1_3:34286903-34286922 Msa0115410:intron 55.0%
CTCCCTGACATCAGCTTGTG+AGG + chr1_3:34286981-34287000 Msa0115410:CDS 55.0%
CAGCCTCACAAGCTGATGTC+AGG - chr1_3:34286987-34287006 None:intergenic 55.0%
! AGGGGCACGCTCATCCATAT+AGG - chr1_3:34287037-34287056 None:intergenic 55.0%
ATATGGATGAGCGTGCCCCT+TGG + chr1_3:34287037-34287056 Msa0115410:CDS 55.0%
!! TGCTTCTGAAGCAGCTGCCA+AGG + chr1_3:34287083-34287102 Msa0115410:CDS 55.0%
ACCCTTAAGTCCACCCCACT+TGG - chr1_3:34287713-34287732 None:intergenic 55.0%
! AAGTGGGGTGGACTTAAGGG+TGG + chr1_3:34287712-34287731 Msa0115410:CDS 55.0%
AGCGCTGCCCATATGAGGAG+GGG - chr1_3:34281693-34281712 None:intergenic 60.0%
! AAAGCGAGCAATGGCGTCGG+CGG - chr1_3:34281729-34281748 None:intergenic 60.0%
CGACGCCATTGCTCGCTTTC+AGG + chr1_3:34281730-34281749 Msa0115410:CDS 60.0%
AGGGGTGGAACCTTGAGCCA+CGG - chr1_3:34281926-34281945 None:intergenic 60.0%
GGCTCAAGGTTCCACCCCTA+CGG + chr1_3:34281927-34281946 Msa0115410:intron 60.0%
! TGGGGAAGCATGCATGGGTG+GGG - chr1_3:34283547-34283566 None:intergenic 60.0%
GCCCCAATCAACGGATGCTC+GGG - chr1_3:34283762-34283781 None:intergenic 60.0%
! ACTGGCAGTGGATTCCACGG+TGG + chr1_3:34286389-34286408 Msa0115410:CDS 60.0%
GATTCCACGGTGGCTGCAGA+AGG + chr1_3:34286399-34286418 Msa0115410:CDS 60.0%
ACTTAAGGGTGGCCAGGCCA+TGG + chr1_3:34287723-34287742 Msa0115410:CDS 60.0%
GTTGAGGTTGAGCCATGGCC+TGG - chr1_3:34287738-34287757 None:intergenic 60.0%
GCAACTGCTGCCGTGGCTCA+AGG + chr1_3:34281913-34281932 Msa0115410:CDS 65.0%
! GGGTGGACTTAAGGGTGGCC+AGG + chr1_3:34287717-34287736 Msa0115410:CDS 65.0%
!! AATGGCGTCGGCGGCGATGG+TGG - chr1_3:34281720-34281739 None:intergenic 70.0%
!! AGCAATGGCGTCGGCGGCGA+TGG - chr1_3:34281723-34281742 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 34281391 34288071 34281391 ID=Msa0115410;Name=Msa0115410
chr1_3 mRNA 34281391 34288071 34281391 ID=Msa0115410-mRNA-1;Parent=Msa0115410;Name=Msa0115410-mRNA-1;_AED=0.19;_eAED=0.19;_QI=100|0.90|0.83|1|1|1|12|195|576
chr1_3 exon 34281391 34281751 34281391 ID=Msa0115410-mRNA-1:exon:10810;Parent=Msa0115410-mRNA-1
chr1_3 exon 34281853 34281934 34281853 ID=Msa0115410-mRNA-1:exon:10811;Parent=Msa0115410-mRNA-1
chr1_3 exon 34282426 34282571 34282426 ID=Msa0115410-mRNA-1:exon:10812;Parent=Msa0115410-mRNA-1
chr1_3 exon 34282835 34283002 34282835 ID=Msa0115410-mRNA-1:exon:10813;Parent=Msa0115410-mRNA-1
chr1_3 exon 34283716 34283840 34283716 ID=Msa0115410-mRNA-1:exon:10814;Parent=Msa0115410-mRNA-1
chr1_3 exon 34284130 34284223 34284130 ID=Msa0115410-mRNA-1:exon:10815;Parent=Msa0115410-mRNA-1
chr1_3 exon 34284684 34284782 34284684 ID=Msa0115410-mRNA-1:exon:10816;Parent=Msa0115410-mRNA-1
chr1_3 exon 34286009 34286189 34286009 ID=Msa0115410-mRNA-1:exon:10817;Parent=Msa0115410-mRNA-1
chr1_3 exon 34286337 34286452 34286337 ID=Msa0115410-mRNA-1:exon:10818;Parent=Msa0115410-mRNA-1
chr1_3 exon 34286949 34287104 34286949 ID=Msa0115410-mRNA-1:exon:10819;Parent=Msa0115410-mRNA-1
chr1_3 exon 34287498 34287626 34287498 ID=Msa0115410-mRNA-1:exon:10820;Parent=Msa0115410-mRNA-1
chr1_3 exon 34287703 34288071 34287703 ID=Msa0115410-mRNA-1:exon:10821;Parent=Msa0115410-mRNA-1
chr1_3 five_prime_UTR 34281391 34281490 34281391 ID=Msa0115410-mRNA-1:five_prime_utr;Parent=Msa0115410-mRNA-1
chr1_3 CDS 34281491 34281751 34281491 ID=Msa0115410-mRNA-1:cds;Parent=Msa0115410-mRNA-1
chr1_3 CDS 34281853 34281934 34281853 ID=Msa0115410-mRNA-1:cds;Parent=Msa0115410-mRNA-1
chr1_3 CDS 34282426 34282571 34282426 ID=Msa0115410-mRNA-1:cds;Parent=Msa0115410-mRNA-1
chr1_3 CDS 34282835 34283002 34282835 ID=Msa0115410-mRNA-1:cds;Parent=Msa0115410-mRNA-1
chr1_3 CDS 34283716 34283840 34283716 ID=Msa0115410-mRNA-1:cds;Parent=Msa0115410-mRNA-1
chr1_3 CDS 34284130 34284223 34284130 ID=Msa0115410-mRNA-1:cds;Parent=Msa0115410-mRNA-1
chr1_3 CDS 34284684 34284782 34284684 ID=Msa0115410-mRNA-1:cds;Parent=Msa0115410-mRNA-1
chr1_3 CDS 34286009 34286189 34286009 ID=Msa0115410-mRNA-1:cds;Parent=Msa0115410-mRNA-1
chr1_3 CDS 34286337 34286452 34286337 ID=Msa0115410-mRNA-1:cds;Parent=Msa0115410-mRNA-1
chr1_3 CDS 34286949 34287104 34286949 ID=Msa0115410-mRNA-1:cds;Parent=Msa0115410-mRNA-1
chr1_3 CDS 34287498 34287626 34287498 ID=Msa0115410-mRNA-1:cds;Parent=Msa0115410-mRNA-1
chr1_3 CDS 34287703 34287876 34287703 ID=Msa0115410-mRNA-1:cds;Parent=Msa0115410-mRNA-1
chr1_3 three_prime_UTR 34287877 34288071 34287877 ID=Msa0115410-mRNA-1:three_prime_utr;Parent=Msa0115410-mRNA-1
Gene Sequence

>Msa0115410

ATGGCAGTGAGAATGAACTGTTCGTTGCAGAACACACTCTCCATTCTTTCACTTCGTTCCAATGTTTCTCACCTCAAATCCAATAAACCCTATTTCCATCTCCCTTCTTCTCCAAGACCAGCTCTGTTCTGCAAATGCTCCACTTCCTCAAATGATGACGAACCCTACGTCATCACAACCCCTCTTTACTACGTTAACGCCCCTCCTCATATGGGCAGCGCTTACTCCACCATCGCCGCCGACGCCATTGCTCGCTTTCAGCGGCTATTGGGAAAGAAAGTTATATTCATTACCGGCACCGATGAACATGGTGAGAAAATTGCAACTGCTGCCGTGGCTCAAGATATTTCGTACGATAAGTTCATTAGAACAACAGATAGCAAGCATGAAGCAATTGTGAAGGAATTTTATTCGAGAGTGCTTGCCAATGGTGACATTTACCGAGCTGATTATGAGGGAATTTATTGTGTCAGCTGTGAGGAATATAAGGATGAGAAGGAACTGCTTGAAAATAATTGTTGTCCGATCCACCTTAAGCCTTGTGTTTCAAGGAAAGAGGACAATTATTTTTTCGCACTGTCAAAATATCAGAAGTCATTGGAGGAAATTTTGAATAAAAATCCAAACTTTGTGCAGCCATCTTTCCGTTTACACGAGGTTCAAACCTGGATCAATAGTGGCCTGAGGGACTTTTCCATTTCCCGAGCATCCGTTGATTGGGGCATACCTGTTCCGAGTGACAAGACTCAGACTATATATGTATGGTTTGATGCTTTACTAGGCTACATATCAGCACTAGCTGATGACCAGGAGCAACCTGATTTACTAAACACCGTTTCTTCAGGTTGGCCAGCTACACTGCACTTGATTGGTAAGGATATTCTACGTTTCCATGCCGTTTATTGGCCAGCTATGCTAATGTCTGCTGGGCTAAGCCTTCCCAAAATGGTATACGGCCATGGATTCTTGACGAAGGATGGTATGAAGATGGGCAAGTCACTAGGAAATACGCTTGAACCAAACGATTTGGTTAGTAAGTTTGGGACAGATGCAGTTAGATACTTCTTCCTCAGAGAGGTGGAATTTGGCAATGATGGGGACTATTCAGAGGAACGCTTCATCAATATTGTAAATGCACATCTTGCCAATACAATTGGAAATCTTCTTAATAGGACTCTAGGACTTCTGAAAAAGAACTGCCAATCAACACTGGCAGTGGATTCCACGGTGGCTGCAGAAGGAAATGCATTCAAGGACAATGTAGCGAGGCTGGTTGATAAAGCTCATATGCACTATGAAAATCTCTCCCTGACATCAGCTTGTGAGGCTGTTCTGGAGATTGGTAATGCTGGTAATTCCTATATGGATGAGCGTGCCCCTTGGTCTCTCTTTAAGCAAGGAGGTACTGCTTCTGAAGCAGCTGCCAAGGACCTTGTAATTATATTAGAGACAGTGAGAATTATTGCCATTGCACTATCTCCTGTTACTCCGAGCTTGAGTTCGAGAATATATGCACAGCTTGGCTATTCCAGGGACCAATTTGAAGCAGCAACCTGGAGAGATACCAAGTGGGGTGGACTTAAGGGTGGCCAGGCCATGGCTCAACCTCAACCAATCTTTGCTAGGATTGAAAATCAAACTGAAGTGGAAGACAAAGGGGTTGCAGTCGGTAAGAAGACTCTGAAAAGTAAAGGGAAGTCGAAACAAGCTCAAGAAGTTGTTGGAGCTTAG
Protein sequence

>Msa0115410

MAVRMNCSLQNTLSILSLRSNVSHLKSNKPYFHLPSSPRPALFCKCSTSSNDDEPYVITTPLYYVNAPPHMGSAYSTIAADAIARFQRLLGKKVIFITGTDEHGEKIATAAVAQDISYDKFIRTTDSKHEAIVKEFYSRVLANGDIYRADYEGIYCVSCEEYKDEKELLENNCCPIHLKPCVSRKEDNYFFALSKYQKSLEEILNKNPNFVQPSFRLHEVQTWINSGLRDFSISRASVDWGIPVPSDKTQTIYVWFDALLGYISALADDQEQPDLLNTVSSGWPATLHLIGKDILRFHAVYWPAMLMSAGLSLPKMVYGHGFLTKDGMKMGKSLGNTLEPNDLVSKFGTDAVRYFFLREVEFGNDGDYSEERFINIVNAHLANTIGNLLNRTLGLLKKNCQSTLAVDSTVAAEGNAFKDNVARLVDKAHMHYENLSLTSACEAVLEIGNAGNSYMDERAPWSLFKQGGTASEAAAKDLVIILETVRIIAIALSPVTPSLSSRIYAQLGYSRDQFEAATWRDTKWGGLKGGQAMAQPQPIFARIENQTEVEDKGVAVGKKTLKSKGKSKQAQEVVGA*