AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0655360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0655360 MtrunA17_Chr4g0052911 81.277 235 13 5 1 204 6 240 1.32e-122 346
Msa0655360 MtrunA17_Chr8g0382711 43.077 130 49 3 96 201 76 204 3.69e-25 97.4
Msa0655360 MtrunA17_Chr1g0179681 33.600 125 48 3 105 202 126 242 3.27e-13 66.6
Msa0655360 MtrunA17_Chr5g0396231 35.484 124 50 4 100 201 382 497 2.32e-12 65.1
Msa0655360 MtrunA17_Chr8g0339171 39.175 97 32 3 125 201 46 135 7.38e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0655360 AT5G45680.1 50.000 216 63 8 26 204 1 208 5.20e-58 182
Msa0655360 AT4G39710.1 37.654 162 68 5 72 201 48 208 1.34e-25 99.4
Msa0655360 AT4G39710.3 37.654 162 68 5 72 201 48 208 1.34e-25 99.4
Msa0655360 AT5G05420.1 50.000 88 35 3 115 202 63 141 2.29e-17 75.9
Msa0655360 AT3G10060.1 33.600 125 48 3 105 202 99 215 4.24e-13 66.2
Msa0655360 AT4G39710.2 34.454 119 49 4 72 162 48 165 7.29e-13 64.7

Find 69 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAAACTTGTAAATTAAA+AGG 0.154515 4_3:-63928914 None:intergenic
TTGAAGCTTCCTCCAGAATT+TGG 0.175545 4_3:+63927802 Msa0655360:CDS
ATAGGCCTCTCCTTGAGTTT+TGG 0.272868 4_3:+63926798 Msa0655360:CDS
TCTTATTGTGATAAAATTGT+AGG 0.291291 4_3:+63926912 Msa0655360:CDS
CCTTGAATTTCCTTGGAGAT+TGG 0.296112 4_3:+63928867 Msa0655360:three_prime_UTR
AACTCATTTCCACTGAATTC+AGG 0.301778 4_3:-63926623 None:intergenic
GCTCTAGATCACATTGATAA+AGG 0.301927 4_3:+63928975 Msa0655360:three_prime_UTR
CTATGGTCCTCAGGCTGTTA+AGG 0.309962 4_3:+63926935 Msa0655360:CDS
CTTGAGCCATATCCAAATTC+TGG 0.313714 4_3:-63927814 None:intergenic
TGTTAAGGGACAACTTATTA+AGG 0.315282 4_3:+63926950 Msa0655360:CDS
GGAATTCCTCCTATGCTTAC+AGG 0.339705 4_3:+63927682 Msa0655360:CDS
CTTCCTCCAGAATTTGGATA+TGG 0.340666 4_3:+63927808 Msa0655360:CDS
TTTCCACTGAATTCAGGATA+TGG 0.346588 4_3:-63926617 None:intergenic
GCTGTTGCAGTAGGTATTAT+TGG 0.348854 4_3:-63926843 None:intergenic
AGGCAAGTCCCAACTGAATA+TGG 0.354350 4_3:-63926654 None:intergenic
AGAACATGTTGTTAGTGAAT+TGG 0.362479 4_3:-63926709 None:intergenic
GGCACATTATGTGGGGAGAT+TGG 0.379326 4_3:+63927220 Msa0655360:intron
TTACCTTCCTTGAATTTCCT+TGG 0.390463 4_3:+63928860 Msa0655360:three_prime_UTR
ATCAAACTTGTAAATTAAAA+GGG 0.396485 4_3:-63928913 None:intergenic
GAATTAACTGTAGCTCCTTC+AGG 0.411871 4_3:+63926885 Msa0655360:CDS
TCGAATAAGAGTACCGCATC+GGG 0.420967 4_3:-63928789 None:intergenic
CTGGTGGTTGTTGTTGGACT+TGG 0.423685 4_3:-63926734 None:intergenic
TTAATGTTAGGCACATTATG+TGG 0.439371 4_3:+63927211 Msa0655360:intron
TGTGATAAAATTGTAGGCTA+TGG 0.467135 4_3:+63926918 Msa0655360:CDS
CAAGAACTGGTGGTTGTTGT+TGG 0.468643 4_3:-63926740 None:intergenic
CTGAAAAGAAGAGAAGCAAT+AGG 0.473925 4_3:+63926780 Msa0655360:CDS
TATGGTCCTCAGGCTGTTAA+GGG 0.475010 4_3:+63926936 Msa0655360:CDS
CCAATCTCCAAGGAAATTCA+AGG 0.485040 4_3:-63928867 None:intergenic
CACTAGCACCATATTCAGTT+GGG 0.486666 4_3:+63926646 Msa0655360:CDS
AATTGTAGGCTATGGTCCTC+AGG 0.493523 4_3:+63926926 Msa0655360:CDS
GGGGAAAATAATAGTAATCT+CGG 0.499779 4_3:-63928892 None:intergenic
TCACTAGCACCATATTCAGT+TGG 0.504892 4_3:+63926645 Msa0655360:CDS
GGATATGGCTCAAGAGGAGC+TGG 0.513862 4_3:+63927823 Msa0655360:CDS
TCATATAGGTTATCAAAGGA+TGG 0.519848 4_3:+63927635 Msa0655360:intron
GTTATCAAAGGATGGGATGT+AGG 0.520177 4_3:+63927643 Msa0655360:CDS
TCAAACTTGTAAATTAAAAG+GGG 0.520191 4_3:-63928912 None:intergenic
CAGGTACCTGTAAGCATAGG+AGG 0.528701 4_3:-63927688 None:intergenic
CTGAATTCAGGATATGGCCA+TGG 0.535653 4_3:-63926611 None:intergenic
TAATGTTAGGCACATTATGT+GGG 0.541025 4_3:+63927212 Msa0655360:intron
GGAAGGTAATTTGACTGCCA+TGG 0.544498 4_3:-63928846 None:intergenic
TGAATTCAGGATATGGCCAT+GGG 0.557547 4_3:-63926610 None:intergenic
GCTTCAGCTGCTGTTGCAGT+AGG 0.562444 4_3:-63926852 None:intergenic
GAATTTGGATATGGCTCAAG+AGG 0.566038 4_3:+63927817 Msa0655360:CDS
TTTGGGGCTGCAAGGAGGTG+AGG 0.573241 4_3:-63926674 None:intergenic
CATATAGGTTATCAAAGGAT+GGG 0.577493 4_3:+63927636 Msa0655360:intron
TATGTGGGGAGATTGGAGAA+TGG 0.578143 4_3:+63927227 Msa0655360:CDS
ATGTTGTTAGTGAATTGGAA+TGG 0.592486 4_3:-63926704 None:intergenic
TCACAATAAGAAAGGCCTGA+AGG 0.595988 4_3:-63926900 None:intergenic
TGAATCATATAGGTTATCAA+AGG 0.598952 4_3:+63927631 Msa0655360:intron
AGTATCATCAACTTCCACAT+TGG 0.600616 4_3:+63929039 Msa0655360:three_prime_UTR
AAACAGGTACCTGTAAGCAT+AGG 0.604775 4_3:-63927691 None:intergenic
GTCGAATAAGAGTACCGCAT+CGG 0.605120 4_3:-63928790 None:intergenic
AAGCATGATTTACAACTCCA+TGG 0.608035 4_3:+63928829 Msa0655360:exon
TAGTAGTGGTATGAATATTG+TGG 0.612278 4_3:-63926569 None:intergenic
AATAAGAGTACCGCATCGGG+AGG 0.612454 4_3:-63928786 None:intergenic
ATGTAGAAGACCAAAACTCA+AGG 0.618115 4_3:-63926808 None:intergenic
TGGCCATATCCTGAATTCAG+TGG 0.622610 4_3:+63926614 Msa0655360:CDS
TCTCCAAGGAAATTCAAGGA+AGG 0.641691 4_3:-63928863 None:intergenic
AATGTTAGGCACATTATGTG+GGG 0.643650 4_3:+63927213 Msa0655360:intron
GGAGCTACAGTTAATTCACA+TGG 0.644123 4_3:-63926879 None:intergenic
GAGCCATATCCAAATTCTGG+AGG 0.647151 4_3:-63927811 None:intergenic
AATAATCAAGTCATCCAATG+TGG 0.649424 4_3:-63929053 None:intergenic
GAAGACCAAAACTCAAGGAG+AGG 0.650327 4_3:-63926803 None:intergenic
ATGTGTCATTCCTCCCGATG+CGG 0.653625 4_3:+63928776 Msa0655360:CDS
AGTTGTCCCTTAACAGCCTG+AGG 0.654589 4_3:-63926942 None:intergenic
AGTTAAATATAATTAGATGA+CGG 0.657127 4_3:-63929172 None:intergenic
AATCTCGGCTCCAATCTCCA+AGG 0.671361 4_3:-63928877 None:intergenic
CAAACTTGTAAATTAAAAGG+GGG 0.675261 4_3:-63928911 None:intergenic
GAATTCAGGATATGGCCATG+GGG 0.748796 4_3:-63926609 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATATGATAAAAGTAAAA+TGG + chr4_3:63927028-63927047 Msa0655360:intron 15.0%
!! ATATTATTCATGAATCATAT+AGG + chr4_3:63927621-63927640 Msa0655360:intron 15.0%
!!! GTAAATTCTATTTTGTTTTA+TGG + chr4_3:63927725-63927744 Msa0655360:intron 15.0%
!! TATAATGATAGCAAATTAAA+AGG - chr4_3:63927890-63927909 None:intergenic 15.0%
!! TATCAAATTTGATCTTTATA+TGG - chr4_3:63927923-63927942 None:intergenic 15.0%
!!! AGGAAAATGAATAATTTTTA+GGG + chr4_3:63928187-63928206 Msa0655360:intron 15.0%
!! ATCAAACTTGTAAATTAAAA+GGG - chr4_3:63928916-63928935 None:intergenic 15.0%
!!! CAATTTTATCACAATAAGAA+AGG - chr4_3:63926911-63926930 None:intergenic 20.0%
!! TCTTATTGTGATAAAATTGT+AGG + chr4_3:63926912-63926931 Msa0655360:CDS 20.0%
!! TTGACCATTATATTAATGTT+AGG + chr4_3:63927199-63927218 Msa0655360:intron 20.0%
!! GTTAATAAACCAAAAAGTAA+AGG + chr4_3:63927501-63927520 Msa0655360:intron 20.0%
!!! GACATTTTTTATTCTATGTT+AGG + chr4_3:63927766-63927785 Msa0655360:intron 20.0%
!!! ATTTTTTATTCTATGTTAGG+AGG + chr4_3:63927769-63927788 Msa0655360:intron 20.0%
!!! AAGATCAAATTTGATAACTT+TGG + chr4_3:63927927-63927946 Msa0655360:intron 20.0%
!!! AATATACAAAACTTGATGAT+AGG + chr4_3:63928074-63928093 Msa0655360:intron 20.0%
!!! ATATACAAAACTTGATGATA+GGG + chr4_3:63928075-63928094 Msa0655360:intron 20.0%
!!! GAGGAAAATGAATAATTTTT+AGG + chr4_3:63928186-63928205 Msa0655360:intron 20.0%
!! CTTGATTATAATAGAGAAAT+TGG + chr4_3:63928321-63928340 Msa0655360:intron 20.0%
!!! CTATTTTTTGAAATAATTGC+CGG + chr4_3:63928606-63928625 Msa0655360:intron 20.0%
!! TCAAACTTGTAAATTAAAAG+GGG - chr4_3:63928915-63928934 None:intergenic 20.0%
!! CATCAAACTTGTAAATTAAA+AGG - chr4_3:63928917-63928936 None:intergenic 20.0%
!!! CTTTTAATTTACAAGTTTGA+TGG + chr4_3:63928915-63928934 Msa0655360:three_prime_UTR 20.0%
!! ATTGGAATGGTTAAGTTTTT+GGG - chr4_3:63926694-63926713 None:intergenic 25.0%
!! AATTGGAATGGTTAAGTTTT+TGG - chr4_3:63926695-63926714 None:intergenic 25.0%
!! TATAACTGACTTTGTATAGA+AGG + chr4_3:63927003-63927022 Msa0655360:intron 25.0%
! ACTAACTAACTTCATTTCAT+CGG - chr4_3:63927092-63927111 None:intergenic 25.0%
! TATAATGGTCAAATTAAGCA+CGG - chr4_3:63927191-63927210 None:intergenic 25.0%
! TGTGCCTAACATTAATATAA+TGG - chr4_3:63927206-63927225 None:intergenic 25.0%
!! CCTTAAAATCTTTTATATCG+CGG + chr4_3:63927431-63927450 Msa0655360:intron 25.0%
! TGTAACAAGTAACAACTTAT+AGG - chr4_3:63927573-63927592 None:intergenic 25.0%
! TTCATGAATAATATTGAGCA+TGG - chr4_3:63927615-63927634 None:intergenic 25.0%
! TGAATCATATAGGTTATCAA+AGG + chr4_3:63927631-63927650 Msa0655360:intron 25.0%
! AAAATTGGAAGTTCATTATG+AGG + chr4_3:63928167-63928186 Msa0655360:intron 25.0%
!! TTCTTTAAGAACTTAATCCA+AGG - chr4_3:63928350-63928369 None:intergenic 25.0%
! TGGATTAAGTTCTTAAAGAA+AGG + chr4_3:63928350-63928369 Msa0655360:intron 25.0%
! GTGTTGTGTCAATAATTTAT+AGG + chr4_3:63928655-63928674 Msa0655360:intron 25.0%
! GAAAAATTGATGCAGAAATA+AGG - chr4_3:63928716-63928735 None:intergenic 25.0%
! CAAACTTGTAAATTAAAAGG+GGG - chr4_3:63928914-63928933 None:intergenic 25.0%
TAGTAGTGGTATGAATATTG+TGG - chr4_3:63926572-63926591 None:intergenic 30.0%
! TTGGAATGGTTAAGTTTTTG+GGG - chr4_3:63926693-63926712 None:intergenic 30.0%
ATGTTGTTAGTGAATTGGAA+TGG - chr4_3:63926707-63926726 None:intergenic 30.0%
AGAACATGTTGTTAGTGAAT+TGG - chr4_3:63926712-63926731 None:intergenic 30.0%
TGTGATAAAATTGTAGGCTA+TGG + chr4_3:63926918-63926937 Msa0655360:CDS 30.0%
TGTTAAGGGACAACTTATTA+AGG + chr4_3:63926950-63926969 Msa0655360:CDS 30.0%
GTGACAACAAATGACAAAAA+TGG - chr4_3:63926979-63926998 None:intergenic 30.0%
ATAATGGTCAAATTAAGCAC+GGG - chr4_3:63927190-63927209 None:intergenic 30.0%
TTAATGTTAGGCACATTATG+TGG + chr4_3:63927211-63927230 Msa0655360:intron 30.0%
TAATGTTAGGCACATTATGT+GGG + chr4_3:63927212-63927231 Msa0655360:intron 30.0%
AGGTATCATAATTCTATCCA+TGG + chr4_3:63927312-63927331 Msa0655360:intron 30.0%
! GTAACGACAATTTAAAACCA+TGG - chr4_3:63927332-63927351 None:intergenic 30.0%
! CCGCGATATAAAAGATTTTA+AGG - chr4_3:63927434-63927453 None:intergenic 30.0%
CTGTTAACTGCAGTAAAAAA+TGG - chr4_3:63927473-63927492 None:intergenic 30.0%
!! CTCATAAGACCTTTACTTTT+TGG - chr4_3:63927513-63927532 None:intergenic 30.0%
TCATATAGGTTATCAAAGGA+TGG + chr4_3:63927635-63927654 Msa0655360:intron 30.0%
CATATAGGTTATCAAAGGAT+GGG + chr4_3:63927636-63927655 Msa0655360:intron 30.0%
TTTACAGTGACTGAAAAAAC+AGG - chr4_3:63927710-63927729 None:intergenic 30.0%
! TATTTTGCACTTTGTTGAAG+TGG + chr4_3:63927951-63927970 Msa0655360:intron 30.0%
TTGTTGAAGTGGTTCTTATA+AGG + chr4_3:63927962-63927981 Msa0655360:intron 30.0%
!! AGAACTGATTAAATTTGCTG+TGG + chr4_3:63928106-63928125 Msa0655360:intron 30.0%
!! ATTAAATTTGCTGTGGCATA+AGG + chr4_3:63928113-63928132 Msa0655360:intron 30.0%
GGCAGAATAAGAAAGAAAAT+TGG + chr4_3:63928152-63928171 Msa0655360:intron 30.0%
ATGACATATCTCTTTAAACC+TGG + chr4_3:63928261-63928280 Msa0655360:intron 30.0%
AATACTTAACAAGTACATCC+AGG - chr4_3:63928282-63928301 None:intergenic 30.0%
AATAGAGAAATTGGAATCCT+TGG + chr4_3:63928330-63928349 Msa0655360:intron 30.0%
CTCACGTTCTTTATGATTAA+AGG - chr4_3:63928416-63928435 None:intergenic 30.0%
TTGAATGTAATCATGTGTGT+AGG - chr4_3:63928581-63928600 None:intergenic 30.0%
AACCAGGTATAAATTCACAT+TGG - chr4_3:63928743-63928762 None:intergenic 30.0%
GGGGAAAATAATAGTAATCT+CGG - chr4_3:63928895-63928914 None:intergenic 30.0%
CAAAAATGTAAATTCACAGC+TGG - chr4_3:63928956-63928975 None:intergenic 30.0%
AATAATCAAGTCATCCAATG+TGG - chr4_3:63929056-63929075 None:intergenic 30.0%
TTTCCACTGAATTCAGGATA+TGG - chr4_3:63926620-63926639 None:intergenic 35.0%
AACTCATTTCCACTGAATTC+AGG - chr4_3:63926626-63926645 None:intergenic 35.0%
! TTCTCCTTTTGTACAAGAAC+TGG - chr4_3:63926756-63926775 None:intergenic 35.0%
CTGAAAAGAAGAGAAGCAAT+AGG + chr4_3:63926780-63926799 Msa0655360:CDS 35.0%
ATGTAGAAGACCAAAACTCA+AGG - chr4_3:63926811-63926830 None:intergenic 35.0%
AATGTTAGGCACATTATGTG+GGG + chr4_3:63927213-63927232 Msa0655360:intron 35.0%
! AGGTCTTATGAGATGTTGAT+TGG + chr4_3:63927521-63927540 Msa0655360:intron 35.0%
GGTTCTTATAAGGATCATGT+TGG + chr4_3:63927972-63927991 Msa0655360:intron 35.0%
AGGATGAAGTAATGGTTACT+TGG + chr4_3:63928030-63928049 Msa0655360:intron 35.0%
!!! GAAATAATTGCCGGTTTTGA+CGG + chr4_3:63928615-63928634 Msa0655360:intron 35.0%
AAGGCAATGTATAACTCTTC+AGG - chr4_3:63928697-63928716 None:intergenic 35.0%
AGCCAATGTGAATTTATACC+TGG + chr4_3:63928738-63928757 Msa0655360:intron 35.0%
!!! TTTATACCTGGTTTTGATGC+AGG + chr4_3:63928750-63928769 Msa0655360:intron 35.0%
AAGCATGATTTACAACTCCA+TGG + chr4_3:63928829-63928848 Msa0655360:exon 35.0%
TTACCTTCCTTGAATTTCCT+TGG + chr4_3:63928860-63928879 Msa0655360:three_prime_UTR 35.0%
! GCTCTAGATCACATTGATAA+AGG + chr4_3:63928975-63928994 Msa0655360:three_prime_UTR 35.0%
AGTATCATCAACTTCCACAT+TGG + chr4_3:63929039-63929058 Msa0655360:three_prime_UTR 35.0%
!!! GTTTTTGGGTGAGTTAGTAG+TGG - chr4_3:63926586-63926605 None:intergenic 40.0%
TGAATTCAGGATATGGCCAT+GGG - chr4_3:63926613-63926632 None:intergenic 40.0%
TCACTAGCACCATATTCAGT+TGG + chr4_3:63926645-63926664 Msa0655360:CDS 40.0%
CACTAGCACCATATTCAGTT+GGG + chr4_3:63926646-63926665 Msa0655360:CDS 40.0%
ACCACCAGTTCTTGTACAAA+AGG + chr4_3:63926749-63926768 Msa0655360:intron 40.0%
! TCCTTTTGTACAAGAACTGG+TGG - chr4_3:63926753-63926772 None:intergenic 40.0%
GCTGTTGCAGTAGGTATTAT+TGG - chr4_3:63926846-63926865 None:intergenic 40.0%
GGAGCTACAGTTAATTCACA+TGG - chr4_3:63926882-63926901 None:intergenic 40.0%
GAATTAACTGTAGCTCCTTC+AGG + chr4_3:63926885-63926904 Msa0655360:CDS 40.0%
TCACAATAAGAAAGGCCTGA+AGG - chr4_3:63926903-63926922 None:intergenic 40.0%
CAAATTAAGCACGGGACAAA+GGG - chr4_3:63927182-63927201 None:intergenic 40.0%
TCAAATTAAGCACGGGACAA+AGG - chr4_3:63927183-63927202 None:intergenic 40.0%
AAGCCACTTACATTTCGTGT+TGG + chr4_3:63927281-63927300 Msa0655360:intron 40.0%
ACACCAACACGAAATGTAAG+TGG - chr4_3:63927287-63927306 None:intergenic 40.0%
! CTTACATTTCGTGTTGGTGT+TGG + chr4_3:63927287-63927306 Msa0655360:intron 40.0%
! TTTTATATCGCGGCTGCAAT+AGG + chr4_3:63927441-63927460 Msa0655360:intron 40.0%
GTTATCAAAGGATGGGATGT+AGG + chr4_3:63927643-63927662 Msa0655360:CDS 40.0%
AAACAGGTACCTGTAAGCAT+AGG - chr4_3:63927694-63927713 None:intergenic 40.0%
TTGAAGCTTCCTCCAGAATT+TGG + chr4_3:63927802-63927821 Msa0655360:CDS 40.0%
CTTCCTCCAGAATTTGGATA+TGG + chr4_3:63927808-63927827 Msa0655360:CDS 40.0%
CTTGAGCCATATCCAAATTC+TGG - chr4_3:63927817-63927836 None:intergenic 40.0%
GAATTTGGATATGGCTCAAG+AGG + chr4_3:63927817-63927836 Msa0655360:CDS 40.0%
!!! TCATGTTGGCCTTTTGTCTT+CGG + chr4_3:63927986-63928005 Msa0655360:intron 40.0%
ACCATTACTTCATCCTAGAG+TGG - chr4_3:63928026-63928045 None:intergenic 40.0%
TAAGGATGAAGAGTAGGAAG+TGG + chr4_3:63928131-63928150 Msa0655360:intron 40.0%
AACCAAGCAAAGTGTGTTGA+TGG + chr4_3:63928503-63928522 Msa0655360:intron 40.0%
ATCCATCAACACACTTTGCT+TGG - chr4_3:63928508-63928527 None:intergenic 40.0%
TGATATGGATCCGTCAAAAC+CGG - chr4_3:63928628-63928647 None:intergenic 40.0%
TCTCCAAGGAAATTCAAGGA+AGG - chr4_3:63928866-63928885 None:intergenic 40.0%
CCAATCTCCAAGGAAATTCA+AGG - chr4_3:63928870-63928889 None:intergenic 40.0%
CCTTGAATTTCCTTGGAGAT+TGG + chr4_3:63928867-63928886 Msa0655360:three_prime_UTR 40.0%
GAATTCAGGATATGGCCATG+GGG - chr4_3:63926612-63926631 None:intergenic 45.0%
CTGAATTCAGGATATGGCCA+TGG - chr4_3:63926614-63926633 None:intergenic 45.0%
TGGCCATATCCTGAATTCAG+TGG + chr4_3:63926614-63926633 Msa0655360:CDS 45.0%
AGGCAAGTCCCAACTGAATA+TGG - chr4_3:63926657-63926676 None:intergenic 45.0%
!!! GTTAAGTTTTTGGGGCTGCA+AGG - chr4_3:63926685-63926704 None:intergenic 45.0%
CAAGAACTGGTGGTTGTTGT+TGG - chr4_3:63926743-63926762 None:intergenic 45.0%
! ATAGGCCTCTCCTTGAGTTT+TGG + chr4_3:63926798-63926817 Msa0655360:CDS 45.0%
GAAGACCAAAACTCAAGGAG+AGG - chr4_3:63926806-63926825 None:intergenic 45.0%
AATTGTAGGCTATGGTCCTC+AGG + chr4_3:63926926-63926945 Msa0655360:CDS 45.0%
TATGGTCCTCAGGCTGTTAA+GGG + chr4_3:63926936-63926955 Msa0655360:CDS 45.0%
TATGTGGGGAGATTGGAGAA+TGG + chr4_3:63927227-63927246 Msa0655360:CDS 45.0%
!! ATTTCGTGTTGGTGTTGGAG+AGG + chr4_3:63927292-63927311 Msa0655360:intron 45.0%
! CATTGGACGCATTTTCTCTC+TGG - chr4_3:63927369-63927388 None:intergenic 45.0%
AAGCGCAATTTCGACTGCAT+TGG - chr4_3:63927386-63927405 None:intergenic 45.0%
! GGATGGGATGTAGGCATTTT+AGG + chr4_3:63927652-63927671 Msa0655360:CDS 45.0%
! TGGGATGTAGGCATTTTAGG+AGG + chr4_3:63927655-63927674 Msa0655360:CDS 45.0%
!! GTAGGCATTTTAGGAGGTGA+TGG + chr4_3:63927661-63927680 Msa0655360:CDS 45.0%
GGAATTCCTCCTATGCTTAC+AGG + chr4_3:63927682-63927701 Msa0655360:CDS 45.0%
GAGCCATATCCAAATTCTGG+AGG - chr4_3:63927814-63927833 None:intergenic 45.0%
TCAAGAGGAGCTGGTTGTAA+AGG + chr4_3:63927832-63927851 Msa0655360:intron 45.0%
TAGCACCAACCGAAGACAAA+AGG - chr4_3:63927998-63928017 None:intergenic 45.0%
!! TGTCTTCGGTTGGTGCTAAT+AGG + chr4_3:63928000-63928019 Msa0655360:intron 45.0%
!! GCCACTCTAGGATGAAGTAA+TGG + chr4_3:63928022-63928041 Msa0655360:intron 45.0%
GTGGCATAAGGATGAAGAGT+AGG + chr4_3:63928125-63928144 Msa0655360:intron 45.0%
CATGTCAAGTAGCTACTAGC+TGG - chr4_3:63928244-63928263 None:intergenic 45.0%
CATGAACCTGCATCAAAACC+AGG - chr4_3:63928759-63928778 None:intergenic 45.0%
!! TCGAATAAGAGTACCGCATC+GGG - chr4_3:63928792-63928811 None:intergenic 45.0%
!! GTCGAATAAGAGTACCGCAT+CGG - chr4_3:63928793-63928812 None:intergenic 45.0%
GGAAGGTAATTTGACTGCCA+TGG - chr4_3:63928849-63928868 None:intergenic 45.0%
TCACCCAAAAACAGACCCCA+TGG + chr4_3:63926594-63926613 Msa0655360:CDS 50.0%
!! TGGCCATGGGGTCTGTTTTT+GGG - chr4_3:63926600-63926619 None:intergenic 50.0%
! ATGGCCATGGGGTCTGTTTT+TGG - chr4_3:63926601-63926620 None:intergenic 50.0%
!!! AAGTTTTTGGGGCTGCAAGG+AGG - chr4_3:63926682-63926701 None:intergenic 50.0%
! CTGGTGGTTGTTGTTGGACT+TGG - chr4_3:63926737-63926756 None:intergenic 50.0%
CTATGGTCCTCAGGCTGTTA+AGG + chr4_3:63926935-63926954 Msa0655360:CDS 50.0%
AGTTGTCCCTTAACAGCCTG+AGG - chr4_3:63926945-63926964 None:intergenic 50.0%
GGCACATTATGTGGGGAGAT+TGG + chr4_3:63927220-63927239 Msa0655360:intron 50.0%
TTCGACAGCAGCTACAATCG+TGG + chr4_3:63927257-63927276 Msa0655360:intron 50.0%
TCGAAATTGCGCTTGTGACG+CGG + chr4_3:63927392-63927411 Msa0655360:intron 50.0%
CAGGTACCTGTAAGCATAGG+AGG - chr4_3:63927691-63927710 None:intergenic 50.0%
AGAGGAGCTGGTTGTAAAGG+AGG + chr4_3:63927835-63927854 Msa0655360:intron 50.0%
!!! GTTGGCCTTTTGTCTTCGGT+TGG + chr4_3:63927990-63928009 Msa0655360:intron 50.0%
! TGGTGCTAATAGGCCACTCT+AGG + chr4_3:63928010-63928029 Msa0655360:intron 50.0%
! CATGTGTGTAGGTGTCGTGT+CGG - chr4_3:63928570-63928589 None:intergenic 50.0%
CACAACACACGACGCTGATA+TGG - chr4_3:63928643-63928662 None:intergenic 50.0%
! ATGTGTCATTCCTCCCGATG+CGG + chr4_3:63928776-63928795 Msa0655360:CDS 50.0%
!! AATAAGAGTACCGCATCGGG+AGG - chr4_3:63928789-63928808 None:intergenic 50.0%
AATCTCGGCTCCAATCTCCA+AGG - chr4_3:63928880-63928899 None:intergenic 50.0%
GCTTCAGCTGCTGTTGCAGT+AGG - chr4_3:63926855-63926874 None:intergenic 55.0%
GGATATGGCTCAAGAGGAGC+TGG + chr4_3:63927823-63927842 Msa0655360:CDS 55.0%
! TTTGGGGCTGCAAGGAGGTG+AGG - chr4_3:63926677-63926696 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 63926564 63929180 63926564 ID=Msa0655360;Name=Msa0655360
chr4_3 mRNA 63926564 63929180 63926564 ID=Msa0655360-mRNA-1;Parent=Msa0655360;Name=Msa0655360-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.4|0.33|1|0.6|0.5|6|344|204
chr4_3 exon 63926564 63926761 63926564 ID=Msa0655360-mRNA-1:exon:17992;Parent=Msa0655360-mRNA-1
chr4_3 exon 63926771 63926971 63926771 ID=Msa0655360-mRNA-1:exon:17993;Parent=Msa0655360-mRNA-1
chr4_3 exon 63927221 63927253 63927221 ID=Msa0655360-mRNA-1:exon:17994;Parent=Msa0655360-mRNA-1
chr4_3 exon 63927643 63927703 63927643 ID=Msa0655360-mRNA-1:exon:17995;Parent=Msa0655360-mRNA-1
chr4_3 exon 63927788 63927844 63927788 ID=Msa0655360-mRNA-1:exon:17996;Parent=Msa0655360-mRNA-1
chr4_3 exon 63928772 63929180 63928772 ID=Msa0655360-mRNA-1:exon:17997;Parent=Msa0655360-mRNA-1
chr4_3 CDS 63926564 63926761 63926564 ID=Msa0655360-mRNA-1:cds;Parent=Msa0655360-mRNA-1
chr4_3 CDS 63926771 63926971 63926771 ID=Msa0655360-mRNA-1:cds;Parent=Msa0655360-mRNA-1
chr4_3 CDS 63927221 63927253 63927221 ID=Msa0655360-mRNA-1:cds;Parent=Msa0655360-mRNA-1
chr4_3 CDS 63927643 63927703 63927643 ID=Msa0655360-mRNA-1:cds;Parent=Msa0655360-mRNA-1
chr4_3 CDS 63927788 63927844 63927788 ID=Msa0655360-mRNA-1:cds;Parent=Msa0655360-mRNA-1
chr4_3 CDS 63928772 63928836 63928772 ID=Msa0655360-mRNA-1:cds;Parent=Msa0655360-mRNA-1
chr4_3 three_prime_UTR 63928837 63929180 63928837 ID=Msa0655360-mRNA-1:three_prime_utr;Parent=Msa0655360-mRNA-1
Gene Sequence

>Msa0655360

ATGAGCCACAATATTCATACCACTACTAACTCACCCAAAAACAGACCCCATGGCCATATCCTGAATTCAGTGGAAATGAGTTCACTAGCACCATATTCAGTTGGGACTTGCCTCACCTCCTTGCAGCCCCAAAAACTTAACCATTCCAATTCACTAACAACATGTTCTGTCCAAGTCCAACAACAACCACCAGTTCTTGAGAATCAACTGAAAAGAAGAGAAGCAATAGGCCTCTCCTTGAGTTTTGGTCTTCTACATTCTTTATTGCAACCAATAATACCTACTGCAACAGCAGCTGAAGCAGTTCCATGTGAATTAACTGTAGCTCCTTCAGGCCTTTCTTATTGTGATAAAATTGTAGGCTATGGTCCTCAGGCTGTTAAGGGACAACTTATTAAGGCACATTATGTGGGGAGATTGGAGAATGGAAAAGTTATCAAAGGATGGGATGTAGGCATTTTAGGAGGTGATGGAATTCCTCCTATGCTTACAGGAGGTAAACGTACATTGAAGCTTCCTCCAGAATTTGGATATGGCTCAAGAGGAGCTGGTTCATGTGTCATTCCTCCCGATGCGGTACTCTTATTCGACGTAGAGTTTGTCAGCAAAGCATGA

Protein sequence

>Msa0655360

MSHNIHTTTNSPKNRPHGHILNSVEMSSLAPYSVGTCLTSLQPQKLNHSNSLTTCSVQVQQQPPVLENQLKRREAIGLSLSFGLLHSLLQPIIPTATAAEAVPCELTVAPSGLSYCDKIVGYGPQAVKGQLIKAHYVGRLENGKVIKGWDVGILGGDGIPPMLTGGKRTLKLPPEFGYGSRGAGSCVIPPDAVLLFDVEFVSKA*