AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0707170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0707170 MtrunA17_Chr8g0388571 94.330 194 11 0 1 194 1 194 2.42e-137 381
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0707170 AT1G64510.1 67.961 206 55 5 1 195 1 206 7.29e-90 262
Msa0707170 AT1G64510.2 67.961 206 55 5 1 195 25 230 1.58e-89 262

Find 69 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGAAATATTAGTTTATTT+TGG 0.171104 4_4:+80405890 Msa0707170:exon
ATTTGACCTCCTCGTACTTC+TGG 0.218535 4_4:-80402868 None:intergenic
CGGAAAAGTTGTTCCTGTTT+TGG 0.256932 4_4:-80402646 None:intergenic
TTTGTGCAGCTTCTTGTTGC+TGG 0.267997 4_4:+80405654 Msa0707170:intron
TTGTTATCTTAAATCATATT+AGG 0.289799 4_4:+80406181 Msa0707170:three_prime_UTR
TCTTTCTTTGAAGGTGGATT+TGG 0.299334 4_4:+80402698 Msa0707170:CDS
CTTTGAAGGTGGATTTGGTT+CGG 0.301133 4_4:+80402703 Msa0707170:CDS
TTCTCTGGTTCTTTCTTTGA+AGG 0.306160 4_4:+80402689 Msa0707170:CDS
TGAAAGTGGGAAATTGATTC+AGG 0.316800 4_4:-80402623 None:intergenic
TGTTTGCTCAAGGGCGGTTA+TGG 0.323023 4_4:-80405817 None:intergenic
AACCCGGTTCCGGGAGTAAC+CGG 0.325603 4_4:-80402734 None:intergenic
CAAGCTTCAAAATCAGAAAA+AGG 0.332411 4_4:+80405871 Msa0707170:CDS
CACAGCAGTGAACCCGGTTC+CGG 0.337320 4_4:-80402744 None:intergenic
GACCCGGTTACTCCCGGAAC+CGG 0.340544 4_4:+80402731 Msa0707170:CDS
TGAACAACCGAATGGCAAAT+TGG 0.341405 4_4:-80406115 None:intergenic
TACAATGACTAGTGATGAAT+TGG 0.345009 4_4:+80406213 Msa0707170:three_prime_UTR
ACAGCAGTGAACCCGGTTCC+GGG 0.353594 4_4:-80402743 None:intergenic
TTTCCCACTTTCACCAAAAC+AGG 0.358476 4_4:+80402633 Msa0707170:CDS
GCCTAGGGTTTCTGCTTTAA+CGG 0.367900 4_4:-80402666 None:intergenic
TTTGAAGGTGGATTTGGTTC+GGG 0.368108 4_4:+80402704 Msa0707170:CDS
AGGAGAAACCAACACGTATA+TGG 0.379973 4_4:+80405752 Msa0707170:CDS
CAGCTTCTTGTTGCTGGAGG+TGG 0.388533 4_4:+80405660 Msa0707170:intron
GCAGAAACCCTAGGCTTCTC+TGG 0.408153 4_4:+80402674 Msa0707170:CDS
TATATTGCCAATTTGCCATT+CGG 0.420308 4_4:+80406108 Msa0707170:three_prime_UTR
TTTGACCTCCTCGTACTTCT+GGG 0.421257 4_4:-80402867 None:intergenic
AGAAAAGAAGAAGATGAAAG+TGG 0.446274 4_4:-80402563 None:intergenic
GATTCAGGAAATGCACGAAA+TGG 0.457389 4_4:-80402608 None:intergenic
TCTGGTTCTTTCTTTGAAGG+TGG 0.458081 4_4:+80402692 Msa0707170:CDS
AGAAAGAACCAGAGAAGCCT+AGG 0.460314 4_4:-80402682 None:intergenic
CGCTCATCCTCAGACATGTC+AGG 0.460581 4_4:-80402833 None:intergenic
CTCTTCCACAGCAGTGAACC+CGG 0.461041 4_4:-80402750 None:intergenic
GCTTCGTGAAGTAGGTGAAT+AGG 0.462140 4_4:-80405788 None:intergenic
ATGAACTGTTAGCGAAAGAA+TGG 0.467273 4_4:-80402480 None:intergenic
CCTTGAGCAAACACTATTGA+CGG 0.475105 4_4:+80405827 Msa0707170:CDS
AATATATAGCACTTTGTACT+AGG 0.477160 4_4:-80406091 None:intergenic
TTAAACTAAAAGAGAGATGT+AGG 0.497736 4_4:+80406036 Msa0707170:three_prime_UTR
CGGAACCGGGTTCACTGCTG+TGG 0.505880 4_4:+80402745 Msa0707170:CDS
GGACTCAGGCTTCGTGAAGT+AGG 0.512180 4_4:-80405796 None:intergenic
ACAATCATCATTTGTTGTTG+TGG 0.512294 4_4:+80405960 Msa0707170:three_prime_UTR
TCAAGGGCGGTTATGGACTC+AGG 0.515051 4_4:-80405810 None:intergenic
TTCTGGATGCTATATGCTAG+TGG 0.517463 4_4:-80405717 None:intergenic
ATTTGGTTCGGGTGATGACC+CGG 0.523594 4_4:+80402715 Msa0707170:CDS
GTGCAGCTTCTTGTTGCTGG+AGG 0.528018 4_4:+80405657 Msa0707170:intron
TGGAATTGAATTGAGTAAAG+AGG 0.543427 4_4:-80402543 None:intergenic
CTTCTAAGCAGAAGCATCGA+TGG 0.544630 4_4:+80402517 Msa0707170:exon
TCCGTTAAAGCAGAAACCCT+AGG 0.546122 4_4:+80402665 Msa0707170:CDS
CCGTCAATAGTGTTTGCTCA+AGG 0.548980 4_4:-80405827 None:intergenic
GGTGATGACCCGGTTACTCC+CGG 0.551404 4_4:+80402725 Msa0707170:CDS
GCTGTGTGCACGCACTGAGT+TGG 0.552849 4_4:+80402426 Msa0707170:five_prime_UTR
GTTTCGTACTGTCTGAGTCC+AGG 0.554379 4_4:-80402794 None:intergenic
ACCCGGTTCCGGGAGTAACC+GGG 0.557475 4_4:-80402733 None:intergenic
CGTCAATAGTGTTTGCTCAA+GGG 0.562059 4_4:-80405826 None:intergenic
GAAGAACCGCAATGTCCACC+TGG 0.563779 4_4:+80402776 Msa0707170:CDS
ACCCGGTTACTCCCGGAACC+GGG 0.574089 4_4:+80402732 Msa0707170:CDS
GATGCCGTCCATATACGTGT+TGG 0.610520 4_4:-80405760 None:intergenic
GAAAGAACCAGAGAAGCCTA+GGG 0.615293 4_4:-80402681 None:intergenic
CTGAGTCCAGGTGGACATTG+CGG 0.619818 4_4:-80402782 None:intergenic
TCGTGAAGTAGGTGAATAGG+AGG 0.634881 4_4:-80405785 None:intergenic
TTAATATGTGAACAACCGAA+TGG 0.638417 4_4:-80406123 None:intergenic
CAATAGTGTTTGCTCAAGGG+CGG 0.640418 4_4:-80405823 None:intergenic
GAAACCAACACGTATATGGA+CGG 0.655460 4_4:+80405756 Msa0707170:CDS
TGGAGGTGGCATGTATGTAG+AGG 0.659352 4_4:+80405674 Msa0707170:CDS
TTTAAGGCCTGACATGTCTG+AGG 0.660772 4_4:+80402826 Msa0707170:CDS
GTCAGGCCTTAAAACAACCA+TGG 0.661319 4_4:-80402816 None:intergenic
TGCACTCACCCAGAAGTACG+AGG 0.696215 4_4:+80402859 Msa0707170:CDS
CGAAATGGAGAAGATGACTG+AGG 0.700648 4_4:-80402593 None:intergenic
ACTCAGACAGTACGAAACCA+TGG 0.703252 4_4:+80402799 Msa0707170:CDS
TCGTACTGTCTGAGTCCAGG+TGG 0.716797 4_4:-80402791 None:intergenic
ACTCACCCAGAAGTACGAGG+AGG 0.791351 4_4:+80402862 Msa0707170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAAAATTTAAGGATTTA+GGG - chr4_4:80403578-80403597 None:intergenic 10.0%
!!! ATTTAAGGATTTAAAATTTA+AGG - chr4_4:80403586-80403605 None:intergenic 10.0%
!!! GATTTAAAATTTAAGGATTT+AGG - chr4_4:80403579-80403598 None:intergenic 15.0%
!! TAAAATAAAAAAGAGCAAAT+AGG - chr4_4:80404867-80404886 None:intergenic 15.0%
!!! AAGGAAATATTAGTTTATTT+TGG + chr4_4:80405890-80405909 Msa0707170:exon 15.0%
!! TTGTTATCTTAAATCATATT+AGG + chr4_4:80406181-80406200 Msa0707170:three_prime_UTR 15.0%
!! AAAAAATATAGAGTCAGATA+AGG - chr4_4:80402452-80402471 None:intergenic 20.0%
!!! AGGGATTTGATATTTAATTT+GGG - chr4_4:80403559-80403578 None:intergenic 20.0%
!! TAGGGATTTGATATTTAATT+TGG - chr4_4:80403560-80403579 None:intergenic 20.0%
!! TGATAATTAGATGACATTTA+AGG - chr4_4:80403601-80403620 None:intergenic 20.0%
!!! GAGAAATTTGATAATAAACT+TGG + chr4_4:80404218-80404237 Msa0707170:intron 20.0%
!!! TAAAATTTGTTCTACTTAGT+AGG - chr4_4:80404280-80404299 None:intergenic 20.0%
!! TAGGAATTTGATATTCAATT+TGG + chr4_4:80404627-80404646 Msa0707170:intron 20.0%
!! AGGAATTTGATATTCAATTT+GGG + chr4_4:80404628-80404647 Msa0707170:intron 20.0%
!!! AATTTGGGAATATTGATTTT+TGG + chr4_4:80404643-80404662 Msa0707170:intron 20.0%
!!! GGATATTAATTTAACTTCAA+CGG - chr4_4:80405504-80405523 None:intergenic 20.0%
!!! TGTTTTCTTACATTTTCATA+TGG + chr4_4:80405985-80406004 Msa0707170:three_prime_UTR 20.0%
!!! ATTCAAGTATTTTTGTAACA+AGG + chr4_4:80406008-80406027 Msa0707170:three_prime_UTR 20.0%
!!! GTCTAAATTTTCATATTTAG+AGG + chr4_4:80406146-80406165 Msa0707170:three_prime_UTR 20.0%
! GGATTAACTTAACAAACAAA+AGG - chr4_4:80402900-80402919 None:intergenic 25.0%
! CACTTAGTTTATCATTCAAA+TGG - chr4_4:80402921-80402940 None:intergenic 25.0%
! GATTGCAATTCTAACAAATA+TGG - chr4_4:80403017-80403036 None:intergenic 25.0%
!!! AAGTGTTTGTTTTGAAAGAA+TGG - chr4_4:80403122-80403141 None:intergenic 25.0%
! AGCAATGACTTATTCAAATA+AGG - chr4_4:80403173-80403192 None:intergenic 25.0%
! TTGTATTTAATCCTAAGTCA+GGG - chr4_4:80403385-80403404 None:intergenic 25.0%
! TTTGTATTTAATCCTAAGTC+AGG - chr4_4:80403386-80403405 None:intergenic 25.0%
!!! AACAGATTTTTTTAACGTCA+GGG - chr4_4:80403446-80403465 None:intergenic 25.0%
!!! TAACAGATTTTTTTAACGTC+AGG - chr4_4:80403447-80403466 None:intergenic 25.0%
! AAAAAATCTGTTAAGTGATG+AGG + chr4_4:80403454-80403473 Msa0707170:intron 25.0%
!!! AATTTGGGGATATTGATTTT+TGG - chr4_4:80403544-80403563 None:intergenic 25.0%
!!! GGGATTTGATATTTAATTTG+GGG - chr4_4:80403558-80403577 None:intergenic 25.0%
! AAATTTCGTATTTACTGTCA+GGG - chr4_4:80403704-80403723 None:intergenic 25.0%
! TTTCTCCCTTTAGTATATAA+TGG + chr4_4:80403849-80403868 Msa0707170:intron 25.0%
! TGATGCCATTATATACTAAA+GGG - chr4_4:80403857-80403876 None:intergenic 25.0%
! ATGGAGAAATGAATTATGAA+CGG + chr4_4:80403888-80403907 Msa0707170:intron 25.0%
!!! CAAGCTATGACTTTAAAATA+GGG - chr4_4:80403930-80403949 None:intergenic 25.0%
!!! TCAAGCTATGACTTTAAAAT+AGG - chr4_4:80403931-80403950 None:intergenic 25.0%
!! CAACAACAATATCCAATTTT+TGG + chr4_4:80403967-80403986 Msa0707170:intron 25.0%
! ATTCACTTACTAAAATACAC+AGG + chr4_4:80404018-80404037 Msa0707170:intron 25.0%
!!! GATTTGCTAATTTATTGTCA+GGG + chr4_4:80404484-80404503 Msa0707170:intron 25.0%
! GTGTATACTTACTATCAATT+AGG - chr4_4:80404511-80404530 None:intergenic 25.0%
! ATTAAACACAACTTAGTGTA+AGG - chr4_4:80404543-80404562 None:intergenic 25.0%
! AGAGAATTAGATGACATTTA+GGG + chr4_4:80404586-80404605 Msa0707170:intron 25.0%
!! ATTTAGGGATTTGAGATTTA+AGG + chr4_4:80404601-80404620 Msa0707170:intron 25.0%
!! GATTTGAGATTTAAGGATTT+AGG + chr4_4:80404608-80404627 Msa0707170:intron 25.0%
! AAAAATAGAGAACAATGGAA+GGG - chr4_4:80405037-80405056 None:intergenic 25.0%
! AAAAAATAGAGAACAATGGA+AGG - chr4_4:80405038-80405057 None:intergenic 25.0%
! ATCAATGCAATAACTTTAAG+CGG - chr4_4:80405333-80405352 None:intergenic 25.0%
! TTATTCCAATGAGAAAAGAA+TGG - chr4_4:80405611-80405630 None:intergenic 25.0%
!!! AAGTATTTTTGTAACAAGGT+TGG + chr4_4:80406012-80406031 Msa0707170:three_prime_UTR 25.0%
! TTAAACTAAAAGAGAGATGT+AGG + chr4_4:80406036-80406055 Msa0707170:three_prime_UTR 25.0%
! AATATATAGCACTTTGTACT+AGG - chr4_4:80406094-80406113 None:intergenic 25.0%
TGGAATTGAATTGAGTAAAG+AGG - chr4_4:80402546-80402565 None:intergenic 30.0%
AGAAAAGAAGAAGATGAAAG+TGG - chr4_4:80402566-80402585 None:intergenic 30.0%
ATGATAAACTAAGTGCTCTA+TGG + chr4_4:80402926-80402945 Msa0707170:intron 30.0%
!!! GTTTGTTTTGAAAGAATGGA+GGG - chr4_4:80403118-80403137 None:intergenic 30.0%
!!! TGTTTGTTTTGAAAGAATGG+AGG - chr4_4:80403119-80403138 None:intergenic 30.0%
TATTCAAATAAGGTCGCAAA+GGG - chr4_4:80403163-80403182 None:intergenic 30.0%
TTATTCAAATAAGGTCGCAA+AGG - chr4_4:80403164-80403183 None:intergenic 30.0%
ACCAAAGTGAAAGTAGAAAA+TGG + chr4_4:80403501-80403520 Msa0707170:intron 30.0%
! ACCATTTTCTACTTTCACTT+TGG - chr4_4:80404681-80404700 None:intergenic 30.0%
AAAGTAGAAAATGGTCACTT+TGG + chr4_4:80403510-80403529 Msa0707170:intron 30.0%
!!! GGATATTGATTTTTGGTTCA+GGG - chr4_4:80403537-80403556 None:intergenic 30.0%
GAAATTTCGTATTTACTGTC+AGG - chr4_4:80403705-80403724 None:intergenic 30.0%
AAAGTCCTTGGCTATTTATT+AGG + chr4_4:80403728-80403747 Msa0707170:intron 30.0%
! CTATTTATTAGGCACCTTTT+CGG + chr4_4:80403739-80403758 Msa0707170:intron 30.0%
TATATACTAAAGGGAGAAAG+AGG - chr4_4:80403848-80403867 None:intergenic 30.0%
CTGATGCCATTATATACTAA+AGG - chr4_4:80403858-80403877 None:intergenic 30.0%
CTTTAGTATATAATGGCATC+AGG + chr4_4:80403856-80403875 Msa0707170:intron 30.0%
!! CAACAATATCCAATTTTTGG+TGG + chr4_4:80403970-80403989 Msa0707170:intron 30.0%
CAAATTTCTCCACCAAAAAT+TGG - chr4_4:80403982-80404001 None:intergenic 30.0%
ATGCACAATGTCTTAAACTA+TGG - chr4_4:80404073-80404092 None:intergenic 30.0%
TTGTACAAATCTGAATGTCA+TGG - chr4_4:80404099-80404118 None:intergenic 30.0%
ACATTCAGATTTGTACAAGA+AGG + chr4_4:80404101-80404120 Msa0707170:intron 30.0%
AAGTAGAACTTATGCTTTAG+TGG + chr4_4:80404163-80404182 Msa0707170:intron 30.0%
TCAAGAGTAATAGATGCTAA+TGG + chr4_4:80404462-80404481 Msa0707170:intron 30.0%
!! GGATTTGCTAATTTATTGTC+AGG + chr4_4:80404483-80404502 Msa0707170:intron 30.0%
GAGAGAATTAGATGACATTT+AGG + chr4_4:80404585-80404604 Msa0707170:intron 30.0%
!!! GGAATATTGATTTTTGGTTC+AGG + chr4_4:80404649-80404668 Msa0707170:intron 30.0%
AAAGTAGAAAATGGTCACTT+TGG - chr4_4:80403510-80403529 None:intergenic 30.0%
! ACCATTTTCTACTTTCACTT+TGG + chr4_4:80404681-80404700 Msa0707170:intron 30.0%
ACCAAAGTGAAAGTAGAAAA+TGG - chr4_4:80403501-80403520 None:intergenic 30.0%
! AAATCTGTTAAGTGATGATG+TGG - chr4_4:80404729-80404748 None:intergenic 30.0%
!!! TAACAGATTTTTTGAACGTC+AGG + chr4_4:80404739-80404758 Msa0707170:intron 30.0%
!!! AACAGATTTTTTGAACGTCA+GGG + chr4_4:80404740-80404759 Msa0707170:intron 30.0%
TTGTATTTAATCCTGAGTGA+AGG + chr4_4:80404801-80404820 Msa0707170:intron 30.0%
TCAAAAATTGTATTGGAGGA+GGG - chr4_4:80404955-80404974 None:intergenic 30.0%
GAACTCAAAAATTGTATTGG+AGG - chr4_4:80404959-80404978 None:intergenic 30.0%
TGGGAACTCAAAAATTGTAT+TGG - chr4_4:80404962-80404981 None:intergenic 30.0%
AAAATAGAGAACAATGGAAG+GGG - chr4_4:80405036-80405055 None:intergenic 30.0%
GTGGAAAAAATAGAGAACAA+TGG - chr4_4:80405042-80405061 None:intergenic 30.0%
! ATTTTGTTCTACGAGACTTA+TGG + chr4_4:80405288-80405307 Msa0707170:intron 30.0%
GTTCACAATTGTGATTCTTA+AGG + chr4_4:80405456-80405475 Msa0707170:intron 30.0%
AGTTAGAGTCAAATCAAACT+TGG - chr4_4:80405525-80405544 None:intergenic 30.0%
! CTATACCATTCTTTTCTCAT+TGG + chr4_4:80405603-80405622 Msa0707170:intron 30.0%
! TATGTAGAGGTTTTTAACAG+AGG + chr4_4:80405687-80405706 Msa0707170:CDS 30.0%
!!! TGATTTTGAAGCTTGTTGAT+CGG - chr4_4:80405866-80405885 None:intergenic 30.0%
CAAGCTTCAAAATCAGAAAA+AGG + chr4_4:80405871-80405890 Msa0707170:CDS 30.0%
!! ACAATCATCATTTGTTGTTG+TGG + chr4_4:80405960-80405979 Msa0707170:three_prime_UTR 30.0%
TATATTGCCAATTTGCCATT+CGG + chr4_4:80406108-80406127 Msa0707170:three_prime_UTR 30.0%
TTAATATGTGAACAACCGAA+TGG - chr4_4:80406126-80406145 None:intergenic 30.0%
TACAATGACTAGTGATGAAT+TGG + chr4_4:80406213-80406232 Msa0707170:three_prime_UTR 30.0%
ATGAACTGTTAGCGAAAGAA+TGG - chr4_4:80402483-80402502 None:intergenic 35.0%
! TGAAAGTGGGAAATTGATTC+AGG - chr4_4:80402626-80402645 None:intergenic 35.0%
!! TTCTCTGGTTCTTTCTTTGA+AGG + chr4_4:80402689-80402708 Msa0707170:CDS 35.0%
! TCTTTCTTTGAAGGTGGATT+TGG + chr4_4:80402698-80402717 Msa0707170:CDS 35.0%
!! ACGAAACCATGGTTGTTTTA+AGG + chr4_4:80402810-80402829 Msa0707170:CDS 35.0%
! TGATGATGATGATGATGAGT+AGG + chr4_4:80402965-80402984 Msa0707170:intron 35.0%
ATTCAAATAAGGTCGCAAAG+GGG - chr4_4:80403162-80403181 None:intergenic 35.0%
AATAAGTCATTGCTCTGCTT+CGG + chr4_4:80403179-80403198 Msa0707170:intron 35.0%
!! ATTTTGGGGATGGGAAATAT+AGG + chr4_4:80403220-80403239 Msa0707170:intron 35.0%
!! TTTTGGGGATGGGAAATATA+GGG + chr4_4:80403221-80403240 Msa0707170:intron 35.0%
ATGGGAAATATAGGGGAAAA+TGG + chr4_4:80403229-80403248 Msa0707170:intron 35.0%
AAATCTGTTAAGTGATGAGG+TGG + chr4_4:80403457-80403476 Msa0707170:intron 35.0%
!!! GGGATATTGATTTTTGGTTC+AGG - chr4_4:80403538-80403557 None:intergenic 35.0%
!! AACAGTAGGTTGGTGTTTAA+TGG - chr4_4:80403645-80403664 None:intergenic 35.0%
TTAAACACCAACCTACTGTT+TGG + chr4_4:80403645-80403664 Msa0707170:intron 35.0%
ATAGTAAGTATGCACAGTCA+GGG - chr4_4:80403672-80403691 None:intergenic 35.0%
GTGCATACTTACTATCAGTT+AGG + chr4_4:80403677-80403696 Msa0707170:intron 35.0%
CGAAATTTCACTAAAGTCCT+TGG + chr4_4:80403716-80403735 Msa0707170:intron 35.0%
ATCTTGAGGCAATGATATGT+TGG + chr4_4:80403773-80403792 Msa0707170:intron 35.0%
TCTTGAGGCAATGATATGTT+GGG + chr4_4:80403774-80403793 Msa0707170:intron 35.0%
ATAGTAGTGTCATAGTGTTG+TGG + chr4_4:80403814-80403833 Msa0707170:intron 35.0%
TGGCATCAGGATTACATATA+TGG + chr4_4:80403869-80403888 Msa0707170:intron 35.0%
TTATTGTATGCTCAGACCTA+CGG + chr4_4:80404402-80404421 Msa0707170:intron 35.0%
ATAGTAAGTATACACAGCCA+GGG + chr4_4:80404516-80404535 Msa0707170:intron 35.0%
AAAAGAGCAAATAGGCACTT+TGG - chr4_4:80404859-80404878 None:intergenic 35.0%
CTCAAAAATTGTATTGGAGG+AGG - chr4_4:80404956-80404975 None:intergenic 35.0%
!!! TTTTTGAGTTCCCACAAATG+AGG + chr4_4:80404968-80404987 Msa0707170:intron 35.0%
!!! GAGGGTTTTGGAAAAAAGAA+AGG - chr4_4:80405070-80405089 None:intergenic 35.0%
CTGCACAAAGGAAAATCATT+AGG - chr4_4:80405643-80405662 None:intergenic 35.0%
TAGCATCCAGAAGAAAAACA+AGG + chr4_4:80405728-80405747 Msa0707170:CDS 35.0%
ATCCAGAAGAAAAACAAGGA+AGG + chr4_4:80405732-80405751 Msa0707170:CDS 35.0%
!!! ATCCTTTTTTTCAGAGCTAC+TGG - chr4_4:80405921-80405940 None:intergenic 35.0%
!! AGTAGCTCTGAAAAAAAGGA+TGG + chr4_4:80405920-80405939 Msa0707170:three_prime_UTR 35.0%
GATTCAGGAAATGCACGAAA+TGG - chr4_4:80402611-80402630 None:intergenic 40.0%
TTTCCCACTTTCACCAAAAC+AGG + chr4_4:80402633-80402652 Msa0707170:CDS 40.0%
!!! GTTCCTGTTTTGGTGAAAGT+GGG - chr4_4:80402639-80402658 None:intergenic 40.0%
!!! TGTTCCTGTTTTGGTGAAAG+TGG - chr4_4:80402640-80402659 None:intergenic 40.0%
! CGGAAAAGTTGTTCCTGTTT+TGG - chr4_4:80402649-80402668 None:intergenic 40.0%
!! TCTGGTTCTTTCTTTGAAGG+TGG + chr4_4:80402692-80402711 Msa0707170:CDS 40.0%
! CTTTGAAGGTGGATTTGGTT+CGG + chr4_4:80402703-80402722 Msa0707170:CDS 40.0%
! TTTGAAGGTGGATTTGGTTC+GGG + chr4_4:80402704-80402723 Msa0707170:CDS 40.0%
TTTGGGGATGGGAAATATAG+GGG + chr4_4:80403222-80403241 Msa0707170:intron 40.0%
GTCAGGGACTAAAGTGATAA+CGG - chr4_4:80404756-80404775 None:intergenic 40.0%
GATAGTAAGTATGCACAGTC+AGG - chr4_4:80403673-80403692 None:intergenic 40.0%
AGGTGCCTAATAAATAGCCA+AGG - chr4_4:80403736-80403755 None:intergenic 40.0%
GATCAACTTTCAAGCCGAAA+AGG - chr4_4:80403756-80403775 None:intergenic 40.0%
TATTGTATGCTCAGACCTAC+GGG + chr4_4:80404403-80404422 Msa0707170:intron 40.0%
AATTCATATCTCTACCCCGT+AGG - chr4_4:80404421-80404440 None:intergenic 40.0%
GATAGTAAGTATACACAGCC+AGG + chr4_4:80404515-80404534 Msa0707170:intron 40.0%
! TGATAACAGAAGTGCAGAGT+CGG + chr4_4:80404770-80404789 Msa0707170:intron 40.0%
! TTGTATTGGAGGAGGGTTTT+GGG - chr4_4:80404948-80404967 None:intergenic 40.0%
! ATTGTATTGGAGGAGGGTTT+TGG - chr4_4:80404949-80404968 None:intergenic 40.0%
ACAAAACCCTCCTCATTTGT+GGG - chr4_4:80404981-80405000 None:intergenic 40.0%
AACAAAACCCTCCTCATTTG+TGG - chr4_4:80404982-80405001 None:intergenic 40.0%
GGAAAAAAGAAAGGAGCAAG+TGG - chr4_4:80405061-80405080 None:intergenic 40.0%
AAACTCGCAAACAAAGCCTA+GGG + chr4_4:80405106-80405125 Msa0707170:intron 40.0%
ACAAAGCCTAGGGAAAAGAA+TGG + chr4_4:80405116-80405135 Msa0707170:intron 40.0%
! AGTGTTCCATTCTTTTCCCT+AGG - chr4_4:80405125-80405144 None:intergenic 40.0%
GAACACTGATGCTAACTCTA+GGG + chr4_4:80405138-80405157 Msa0707170:intron 40.0%
TTCTGGATGCTATATGCTAG+TGG - chr4_4:80405720-80405739 None:intergenic 40.0%
!!! CTCCTTCCTTGTTTTTCTTC+TGG - chr4_4:80405737-80405756 None:intergenic 40.0%
AGGAGAAACCAACACGTATA+TGG + chr4_4:80405752-80405771 Msa0707170:CDS 40.0%
GAAACCAACACGTATATGGA+CGG + chr4_4:80405756-80405775 Msa0707170:CDS 40.0%
CGTCAATAGTGTTTGCTCAA+GGG - chr4_4:80405829-80405848 None:intergenic 40.0%
CCTTGAGCAAACACTATTGA+CGG + chr4_4:80405827-80405846 Msa0707170:CDS 40.0%
!! CTCCAGTAGCTCTGAAAAAA+AGG + chr4_4:80405916-80405935 Msa0707170:three_prime_UTR 40.0%
TGAACAACCGAATGGCAAAT+TGG - chr4_4:80406118-80406137 None:intergenic 40.0%
! ACACAGCGCACTCAGTTTTT+GGG - chr4_4:80402413-80402432 None:intergenic 45.0%
!! CTTCTAAGCAGAAGCATCGA+TGG + chr4_4:80402517-80402536 Msa0707170:exon 45.0%
CGAAATGGAGAAGATGACTG+AGG - chr4_4:80402596-80402615 None:intergenic 45.0%
TCCGTTAAAGCAGAAACCCT+AGG + chr4_4:80402665-80402684 Msa0707170:CDS 45.0%
GCCTAGGGTTTCTGCTTTAA+CGG - chr4_4:80402669-80402688 None:intergenic 45.0%
GAAAGAACCAGAGAAGCCTA+GGG - chr4_4:80402684-80402703 None:intergenic 45.0%
AGAAAGAACCAGAGAAGCCT+AGG - chr4_4:80402685-80402704 None:intergenic 45.0%
ACTCAGACAGTACGAAACCA+TGG + chr4_4:80402799-80402818 Msa0707170:CDS 45.0%
GTCAGGCCTTAAAACAACCA+TGG - chr4_4:80402819-80402838 None:intergenic 45.0%
! TTTAAGGCCTGACATGTCTG+AGG + chr4_4:80402826-80402845 Msa0707170:CDS 45.0%
TTTGACCTCCTCGTACTTCT+GGG - chr4_4:80402870-80402889 None:intergenic 45.0%
ATTTGACCTCCTCGTACTTC+TGG - chr4_4:80402871-80402890 None:intergenic 45.0%
TGAAAGAATGGAGGGAGACA+AGG - chr4_4:80403110-80403129 None:intergenic 45.0%
GACAGTGAGCTGTAGAATCA+AGG - chr4_4:80403354-80403373 None:intergenic 45.0%
TCTACAGCTCACTGTCACAT+AGG + chr4_4:80403358-80403377 Msa0707170:intron 45.0%
! ATAACGGAAGTGCAGAGTCA+GGG - chr4_4:80403414-80403433 None:intergenic 45.0%
! CGGCTTGAAAGTTGATCTTG+AGG + chr4_4:80403759-80403778 Msa0707170:intron 45.0%
GGCAATGATATGTTGGGCTT+AGG + chr4_4:80403780-80403799 Msa0707170:intron 45.0%
ATTGTATGCTCAGACCTACG+GGG + chr4_4:80404404-80404423 Msa0707170:intron 45.0%
ACAACTTAGTGTAAGGTCCC+TGG - chr4_4:80404536-80404555 None:intergenic 45.0%
! GTGATGATGTGGTGCATATG+AGG - chr4_4:80404718-80404737 None:intergenic 45.0%
! GATAACAGAAGTGCAGAGTC+GGG + chr4_4:80404771-80404790 Msa0707170:intron 45.0%
!!! GGGTTTTGGGATGTTTTGGA+GGG - chr4_4:80404935-80404954 None:intergenic 45.0%
!!! AGGGTTTTGGGATGTTTTGG+AGG - chr4_4:80404936-80404955 None:intergenic 45.0%
!!! AGGAGGGTTTTGGGATGTTT+TGG - chr4_4:80404939-80404958 None:intergenic 45.0%
TTGAGTTCCCACAAATGAGG+AGG + chr4_4:80404971-80404990 Msa0707170:intron 45.0%
TGAGTTCCCACAAATGAGGA+GGG + chr4_4:80404972-80404991 Msa0707170:intron 45.0%
TAGAGAACAATGGAAGGGGA+GGG - chr4_4:80405032-80405051 None:intergenic 45.0%
ATAGAGAACAATGGAAGGGG+AGG - chr4_4:80405033-80405052 None:intergenic 45.0%
TTTGCGAGTTTGGAGGGAAA+GGG - chr4_4:80405097-80405116 None:intergenic 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG - chr4_4:80405103-80405122 None:intergenic 45.0%
!! CTAGGCTTTGTTTGCGAGTT+TGG - chr4_4:80405107-80405126 None:intergenic 45.0%
CAAACTCGCAAACAAAGCCT+AGG + chr4_4:80405105-80405124 Msa0707170:intron 45.0%
GGAACACTGATGCTAACTCT+AGG + chr4_4:80405137-80405156 Msa0707170:intron 45.0%
AGCAACAAGAAGCTGCACAA+AGG - chr4_4:80405655-80405674 None:intergenic 45.0%
TTTGTGCAGCTTCTTGTTGC+TGG + chr4_4:80405654-80405673 Msa0707170:intron 45.0%
TCGTGAAGTAGGTGAATAGG+AGG - chr4_4:80405788-80405807 None:intergenic 45.0%
GCTTCGTGAAGTAGGTGAAT+AGG - chr4_4:80405791-80405810 None:intergenic 45.0%
CAATAGTGTTTGCTCAAGGG+CGG - chr4_4:80405826-80405845 None:intergenic 45.0%
CCGTCAATAGTGTTTGCTCA+AGG - chr4_4:80405830-80405849 None:intergenic 45.0%
! CACACAGCGCACTCAGTTTT+TGG - chr4_4:80402414-80402433 None:intergenic 50.0%
!! ATTTGGTTCGGGTGATGACC+CGG + chr4_4:80402715-80402734 Msa0707170:CDS 50.0%
GTTTCGTACTGTCTGAGTCC+AGG - chr4_4:80402797-80402816 None:intergenic 50.0%
AAGTCATTGCTCTGCTTCGG+AGG + chr4_4:80403182-80403201 Msa0707170:intron 50.0%
AGTCATTGCTCTGCTTCGGA+GGG + chr4_4:80403183-80403202 Msa0707170:intron 50.0%
!! GAAGGGAGGATTTTGGGGAT+GGG + chr4_4:80403211-80403230 Msa0707170:intron 50.0%
GTCACATAGGTCCCTGACTT+AGG + chr4_4:80403371-80403390 Msa0707170:intron 50.0%
!! GATAACGGAAGTGCAGAGTC+AGG - chr4_4:80403415-80403434 None:intergenic 50.0%
TCAGGGACCAAACAGTAGGT+TGG - chr4_4:80403655-80403674 None:intergenic 50.0%
ACAGTCAGGGACCAAACAGT+AGG - chr4_4:80403659-80403678 None:intergenic 50.0%
! GGTGCATATGAGGTGTCACA+GGG - chr4_4:80404708-80404727 None:intergenic 50.0%
! TGGTGCATATGAGGTGTCAC+AGG - chr4_4:80404709-80404728 None:intergenic 50.0%
GTCACATAGGTCCTTCACTC+AGG - chr4_4:80404815-80404834 None:intergenic 50.0%
AATGGAAGGGGAGGGATTTG+GGG - chr4_4:80405024-80405043 None:intergenic 50.0%
CAATGGAAGGGGAGGGATTT+GGG - chr4_4:80405025-80405044 None:intergenic 50.0%
ACAATGGAAGGGGAGGGATT+TGG - chr4_4:80405026-80405045 None:intergenic 50.0%
GTTTGCGAGTTTGGAGGGAA+AGG - chr4_4:80405098-80405117 None:intergenic 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG - chr4_4:80405104-80405123 None:intergenic 50.0%
TGGAGGTGGCATGTATGTAG+AGG + chr4_4:80405674-80405693 Msa0707170:CDS 50.0%
GATGCCGTCCATATACGTGT+TGG - chr4_4:80405763-80405782 None:intergenic 50.0%
TGTTTGCTCAAGGGCGGTTA+TGG - chr4_4:80405820-80405839 None:intergenic 50.0%
GCAGAAACCCTAGGCTTCTC+TGG + chr4_4:80402674-80402693 Msa0707170:CDS 55.0%
CTCTTCCACAGCAGTGAACC+CGG - chr4_4:80402753-80402772 None:intergenic 55.0%
GAAGAACCGCAATGTCCACC+TGG + chr4_4:80402776-80402795 Msa0707170:CDS 55.0%
CTGAGTCCAGGTGGACATTG+CGG - chr4_4:80402785-80402804 None:intergenic 55.0%
TCGTACTGTCTGAGTCCAGG+TGG - chr4_4:80402794-80402813 None:intergenic 55.0%
CGCTCATCCTCAGACATGTC+AGG - chr4_4:80402836-80402855 None:intergenic 55.0%
! TGCACTCACCCAGAAGTACG+AGG + chr4_4:80402859-80402878 Msa0707170:CDS 55.0%
! ACTCACCCAGAAGTACGAGG+AGG + chr4_4:80402862-80402881 Msa0707170:CDS 55.0%
GTCATTGCTCTGCTTCGGAG+GGG + chr4_4:80403184-80403203 Msa0707170:intron 55.0%
! GGAGGGGAAGGGAGGATTTT+GGG + chr4_4:80403205-80403224 Msa0707170:intron 55.0%
! GAGGGGAAGGGAGGATTTTG+GGG + chr4_4:80403206-80403225 Msa0707170:intron 55.0%
!! GGAAGGGAGGATTTTGGGGA+TGG + chr4_4:80403210-80403229 Msa0707170:intron 55.0%
GTGATGAGGTGGCGCATATG+AGG + chr4_4:80403468-80403487 Msa0707170:intron 55.0%
! TGGCGCATATGAGGTGTCAC+AGG + chr4_4:80403477-80403496 Msa0707170:intron 55.0%
! GGCGCATATGAGGTGTCACA+GGG + chr4_4:80403478-80403497 Msa0707170:intron 55.0%
GAAGGACCTATGTGACAGCG+AGG + chr4_4:80404819-80404838 Msa0707170:intron 55.0%
TCTGCACCTCGCTGTCACAT+AGG - chr4_4:80404828-80404847 None:intergenic 55.0%
ATGGAAGGGGAGGGATTTGG+GGG - chr4_4:80405023-80405042 None:intergenic 55.0%
GAGTTTGGAGGGAAAGGGAG+GGG - chr4_4:80405092-80405111 None:intergenic 55.0%
CGAGTTTGGAGGGAAAGGGA+GGG - chr4_4:80405093-80405112 None:intergenic 55.0%
GTGCAGCTTCTTGTTGCTGG+AGG + chr4_4:80405657-80405676 Msa0707170:intron 55.0%
CAGCTTCTTGTTGCTGGAGG+TGG + chr4_4:80405660-80405679 Msa0707170:intron 55.0%
GGACTCAGGCTTCGTGAAGT+AGG - chr4_4:80405799-80405818 None:intergenic 55.0%
TCAAGGGCGGTTATGGACTC+AGG - chr4_4:80405813-80405832 None:intergenic 55.0%
GCTGTGTGCACGCACTGAGT+TGG + chr4_4:80402426-80402445 Msa0707170:five_prime_UTR 60.0%
GGTGATGACCCGGTTACTCC+CGG + chr4_4:80402725-80402744 Msa0707170:CDS 60.0%
AACCCGGTTCCGGGAGTAAC+CGG - chr4_4:80402737-80402756 None:intergenic 60.0%
ACAGCAGTGAACCCGGTTCC+GGG - chr4_4:80402746-80402765 None:intergenic 60.0%
CACAGCAGTGAACCCGGTTC+CGG - chr4_4:80402747-80402766 None:intergenic 60.0%
ATTGCTCTGCTTCGGAGGGG+AGG + chr4_4:80403187-80403206 Msa0707170:intron 60.0%
TTGCTCTGCTTCGGAGGGGA+GGG + chr4_4:80403188-80403207 Msa0707170:intron 60.0%
! GGGAGGGGAAGGGAGGATTT+TGG + chr4_4:80403204-80403223 Msa0707170:intron 60.0%
TGACAGCGAGGTGCAGAGTC+AGG + chr4_4:80404831-80404850 Msa0707170:intron 60.0%
GACAGCGAGGTGCAGAGTCA+GGG + chr4_4:80404832-80404851 Msa0707170:intron 60.0%
TGGAAGGGGAGGGATTTGGG+GGG - chr4_4:80405022-80405041 None:intergenic 60.0%
! GGAAAGGGAGGGGAGGGTTT+TGG - chr4_4:80405082-80405101 None:intergenic 60.0%
TTGGAGGGAAAGGGAGGGGA+GGG - chr4_4:80405088-80405107 None:intergenic 60.0%
TTTGGAGGGAAAGGGAGGGG+AGG - chr4_4:80405089-80405108 None:intergenic 60.0%
GCGAGTTTGGAGGGAAAGGG+AGG - chr4_4:80405094-80405113 None:intergenic 60.0%
GACCCGGTTACTCCCGGAAC+CGG + chr4_4:80402731-80402750 Msa0707170:CDS 65.0%
ACCCGGTTACTCCCGGAACC+GGG + chr4_4:80402732-80402751 Msa0707170:CDS 65.0%
ACCCGGTTCCGGGAGTAACC+GGG - chr4_4:80402736-80402755 None:intergenic 65.0%
CGGAACCGGGTTCACTGCTG+TGG + chr4_4:80402745-80402764 Msa0707170:CDS 65.0%
TGCTCTGCTTCGGAGGGGAG+GGG + chr4_4:80403189-80403208 Msa0707170:intron 65.0%
TGCTTCGGAGGGGAGGGGAA+GGG + chr4_4:80403194-80403213 Msa0707170:intron 65.0%
CTGCTTCGGAGGGGAGGGGA+AGG + chr4_4:80403193-80403212 Msa0707170:intron 70.0%
TTCGGAGGGGAGGGGAAGGG+AGG + chr4_4:80403197-80403216 Msa0707170:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 80402395 80406263 80402395 ID=Msa0707170;Name=Msa0707170
chr4_4 mRNA 80402395 80406263 80402395 ID=Msa0707170-mRNA-1;Parent=Msa0707170;Name=Msa0707170-mRNA-1;_AED=0.01;_eAED=0.01;_QI=141|1|1|1|1|1|2|361|195
chr4_4 exon 80402395 80402883 80402395 ID=Msa0707170-mRNA-1:exon:26111;Parent=Msa0707170-mRNA-1
chr4_4 exon 80405663 80406263 80405663 ID=Msa0707170-mRNA-1:exon:26112;Parent=Msa0707170-mRNA-1
chr4_4 five_prime_UTR 80402395 80402535 80402395 ID=Msa0707170-mRNA-1:five_prime_utr;Parent=Msa0707170-mRNA-1
chr4_4 CDS 80402536 80402883 80402536 ID=Msa0707170-mRNA-1:cds;Parent=Msa0707170-mRNA-1
chr4_4 CDS 80405663 80405902 80405663 ID=Msa0707170-mRNA-1:cds;Parent=Msa0707170-mRNA-1
chr4_4 three_prime_UTR 80405903 80406263 80405903 ID=Msa0707170-mRNA-1:three_prime_utr;Parent=Msa0707170-mRNA-1
Gene Sequence

>Msa0707170

ATGGCATCCTCTTTACTCAATTCAATTCCACTTTCATCTTCTTCTTTTCTTTGCGCTCCTCAGTCATCTTCTCCATTTCGTGCATTTCCTGAATCAATTTCCCACTTTCACCAAAACAGGAACAACTTTTCCGTTAAAGCAGAAACCCTAGGCTTCTCTGGTTCTTTCTTTGAAGGTGGATTTGGTTCGGGTGATGACCCGGTTACTCCCGGAACCGGGTTCACTGCTGTGGAAGAGAAAGAAGAACCGCAATGTCCACCTGGACTCAGACAGTACGAAACCATGGTTGTTTTAAGGCCTGACATGTCTGAGGATGAGCGTCTTGCACTCACCCAGAAGTACGAGGAGCTTCTTGTTGCTGGAGGTGGCATGTATGTAGAGGTTTTTAACAGAGGTGTTATTCCACTAGCATATAGCATCCAGAAGAAAAACAAGGAAGGAGAAACCAACACGTATATGGACGGCATCTACCTCCTATTCACCTACTTCACGAAGCCTGAGTCCATAACCGCCCTTGAGCAAACACTATTGACGGATGATAATGTTATCCGATCAACAAGCTTCAAAATCAGAAAAAGGAAATATTAG

Protein sequence

>Msa0707170

MASSLLNSIPLSSSSFLCAPQSSSPFRAFPESISHFHQNRNNFSVKAETLGFSGSFFEGGFGSGDDPVTPGTGFTAVEEKEEPQCPPGLRQYETMVVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIQKKNKEGETNTYMDGIYLLFTYFTKPESITALEQTLLTDDNVIRSTSFKIRKRKY*