AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380390 MtrunA17_Chr3g0145921 95.122 574 13 6 1 561 1 572 0.0 1103
Msa0380390 MtrunA17_Chr7g0264491 36.565 361 224 1 203 558 192 552 2.79e-76 251
Msa0380390 MtrunA17_Chr1g0180881 36.388 371 229 3 194 558 187 556 1.84e-74 247
Msa0380390 MtrunA17_Chr1g0146481 33.542 319 198 4 249 559 235 547 2.64e-59 206
Msa0380390 MtrunA17_Chr3g0090001 32.558 301 198 1 260 560 108 403 1.04e-46 168
Msa0380390 MtrunA17_Chr4g0021031 31.475 305 199 6 263 560 201 502 1.99e-42 159
Msa0380390 MtrunA17_Chr3g0126401 29.191 346 217 8 235 560 177 514 1.78e-32 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380390 AT1G08540.1 56.752 585 208 9 6 561 2 570 0.0 587
Msa0380390 AT2G36990.1 37.640 356 221 1 203 558 188 542 1.02e-77 255
Msa0380390 AT3G53920.1 34.405 311 198 2 250 559 264 569 3.23e-61 212
Msa0380390 AT5G13730.1 33.882 304 188 2 263 561 122 417 4.20e-52 184
Msa0380390 AT1G64860.1 29.775 356 228 9 213 560 159 500 8.84e-39 149
Msa0380390 AT5G24120.1 30.233 301 205 3 263 560 219 517 1.72e-37 145
Msa0380390 AT5G24120.3 30.233 301 205 3 263 560 219 517 1.72e-37 145
Msa0380390 AT5G24120.2 30.233 301 205 3 263 560 219 517 1.72e-37 145
Msa0380390 AT1G64860.2 29.677 310 197 8 213 514 159 455 5.68e-31 126
Msa0380390 AT3G53920.2 32.895 152 97 1 250 401 264 410 3.83e-28 117

Find 155 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGCTTCTTCTCTTCTCTTC+TGG 0.135700 3_1:+82054085 None:intergenic
TCTAGAGATCTGGGAGCTTT+TGG 0.189205 3_1:+82051160 None:intergenic
GCCAGAAGAGTCAGAGCTTC+TGG 0.195456 3_1:-82053279 Msa0380390:CDS
CTAAGAAAACGTTTGAATTA+TGG 0.201254 3_1:-82052384 Msa0380390:CDS
CGCTTCTTCTCTTCTCTTCT+GGG 0.212244 3_1:+82054086 None:intergenic
TCTTCGGCTGTTTCAGCTTC+AGG 0.261013 3_1:+82050989 None:intergenic
GTGTCTTGTAATTGTTGTTT+TGG 0.271370 3_1:+82053806 None:intergenic
GAGAGAAACAGGTGATTAAA+TGG 0.275402 3_1:-82050904 Msa0380390:CDS
CTGAAAATTTACTTCTCAAA+TGG 0.275681 3_1:-82053497 Msa0380390:CDS
ATCAGTTGCTAAGAATTATC+AGG 0.278584 3_1:-82052313 Msa0380390:CDS
CCCAGAAGCTCTGACTCTTC+TGG 0.279014 3_1:+82053278 None:intergenic
AAACAGTTGTACAGTGAAAA+TGG 0.280971 3_1:-82051259 Msa0380390:CDS
AGAGATAATGATGTTTAAAA+TGG 0.300023 3_1:-82050484 Msa0380390:three_prime_UTR
CGGTGGGTAGGGATTCTGTC+TGG 0.304390 3_1:+82053946 None:intergenic
AACTTTCTGTTCTAGAGATC+TGG 0.306670 3_1:+82051150 None:intergenic
TATTGAAGTTAGCTTATTAC+AGG 0.306792 3_1:-82050712 Msa0380390:three_prime_UTR
CATTAAGCAGTTCATGAAAA+AGG 0.308002 3_1:-82050960 Msa0380390:CDS
CAGGTGATTAAATGGAGATT+TGG 0.320492 3_1:-82050896 Msa0380390:CDS
AAATGAAATTTGTACGGTAT+TGG 0.326814 3_1:-82054305 Msa0380390:five_prime_UTR
GAAGAAGTTGCCGAAGCAAC+TGG 0.327598 3_1:-82051220 Msa0380390:CDS
AGAGAAGTATGATGCTTCTA+AGG 0.329199 3_1:-82051887 Msa0380390:CDS
TTCAGAGAACTTAATTTCTT+CGG 0.359443 3_1:+82053116 None:intergenic
CCAGCCCACATTTGCTCAAT+GGG 0.361480 3_1:-82052436 Msa0380390:CDS
GTGGTTGTTGATTATGTTGT+GGG 0.362716 3_1:+82053538 None:intergenic
TTAAAGTCATCCTCTTGGTT+GGG 0.376197 3_1:+82053387 None:intergenic
GCTAAGAATTATCAGGGATC+TGG 0.378393 3_1:-82052306 Msa0380390:CDS
AAGCTAACTTCAATATTTGA+TGG 0.382497 3_1:+82050720 None:intergenic
TGAAGACACTGCAAGAGATT+GGG 0.385412 3_1:-82050856 Msa0380390:CDS
TCGGCAACTTCTTCATCGTC+AGG 0.396141 3_1:+82051229 None:intergenic
ATGAAGACACTGCAAGAGAT+TGG 0.396405 3_1:-82050857 Msa0380390:CDS
GCTCAATGGGCTACAATGGC+AGG 0.402429 3_1:-82052423 Msa0380390:CDS
AGTTCTCAACCTATGCTCAT+TGG 0.407789 3_1:-82051858 Msa0380390:CDS
TGAAGATGTTCCATTATATC+TGG 0.410021 3_1:+82053417 None:intergenic
TGAAAATTTACTTCTCAAAT+GGG 0.410175 3_1:-82053496 Msa0380390:CDS
TTAATCACCTGTTTCTCTCT+AGG 0.411679 3_1:+82050908 None:intergenic
TCTCAATCCTAGAGAGAAAC+AGG 0.412404 3_1:-82050915 Msa0380390:CDS
GCCAGCCCACATTTGCTCAA+TGG 0.421203 3_1:-82052437 Msa0380390:CDS
CCAGAAGAGTCAGAGCTTCT+GGG 0.422406 3_1:-82053278 Msa0380390:CDS
TTAGTTAATTGTTCGGAGAA+AGG 0.423808 3_1:-82054020 Msa0380390:five_prime_UTR
GATGATGATGGCGGTGGGTA+GGG 0.432222 3_1:+82053935 None:intergenic
AAAGGACCTGGAAAAGGTAT+TGG 0.433707 3_1:-82050942 Msa0380390:CDS
CATCGACAGCCCAGTTGCTT+CGG 0.435866 3_1:+82051210 None:intergenic
TTATTCAAGAGAAAACAAAA+AGG 0.440516 3_1:-82050638 Msa0380390:three_prime_UTR
GGCAATGGATACAGCATCTT+CGG 0.444268 3_1:+82053455 None:intergenic
CTGCTTAATGAGCTGTTCTT+CGG 0.445939 3_1:+82050973 None:intergenic
TGCTCATTGGTGGATTAAAC+AGG 0.447444 3_1:-82051845 Msa0380390:CDS
ACCAGCAGGACCAGATATAA+TGG 0.448188 3_1:-82053427 Msa0380390:CDS
GGTGGTGGAACCAGACTTGA+AGG 0.448899 3_1:+82053233 None:intergenic
TGGGATGAGTCTGCAAGATC+TGG 0.448927 3_1:-82052286 Msa0380390:CDS
GCTTAACAGTTCCACATGGT+GGG 0.453802 3_1:-82051310 Msa0380390:intron
CTTCCCATTCGGATAAGAAA+AGG 0.454639 3_1:+82054136 None:intergenic
GGAGTTTGCCTGAGAGACAT+AGG 0.455446 3_1:+82053698 None:intergenic
GAGAACTTAATTTCTTCGGA+TGG 0.458689 3_1:+82053120 None:intergenic
GGAAATGATGGGTGTAAGTA+GGG 0.462570 3_1:-82050834 Msa0380390:CDS
TCATTTCATTCATTCATTCA+AGG 0.463108 3_1:+82054058 None:intergenic
TAAGTTCTCTGAAGGAATAC+AGG 0.465978 3_1:-82053106 Msa0380390:intron
GATAATGATGTTTAAAATGG+AGG 0.467356 3_1:-82050481 Msa0380390:three_prime_UTR
GGGAAATGATGGGTGTAAGT+AGG 0.467729 3_1:-82050835 Msa0380390:CDS
CTTGAAGGAGACGATGTTTG+TGG 0.468675 3_1:+82053248 None:intergenic
TCCATTATATCTGGTCCTGC+TGG 0.469713 3_1:+82053426 None:intergenic
TAGTTAGTTAGTTAATTGTT+CGG 0.470287 3_1:-82054027 Msa0380390:five_prime_UTR
GGATGCCGCGGGCTTGTAAG+AGG 0.472869 3_1:-82051913 Msa0380390:CDS
TCCTGCTGGTCCAGTGGCAA+TGG 0.473175 3_1:+82053440 None:intergenic
AGATCTCTAGAACAGAAAGT+TGG 0.474573 3_1:-82051148 Msa0380390:CDS
ACCTTGGCCCTATGTCTCTC+AGG 0.475145 3_1:-82053706 Msa0380390:CDS
AGCTAACTTCAATATTTGAT+GGG 0.478315 3_1:+82050721 None:intergenic
AAGTAAGAGAAAGCAAATGA+AGG 0.478974 3_1:-82050451 None:intergenic
TTTCTTATCCGAATGGGAAG+GGG 0.479510 3_1:-82054133 Msa0380390:five_prime_UTR
AACATCGTCTCCTTCAAGTC+TGG 0.484299 3_1:-82053243 Msa0380390:CDS
ATTAAAGTCATCCTCTTGGT+TGG 0.488896 3_1:+82053386 None:intergenic
GAGCATCAAATTTGAAATCA+AGG 0.489172 3_1:+82053754 None:intergenic
CTAAGAATTATCAGGGATCT+GGG 0.490714 3_1:-82052305 Msa0380390:CDS
GATCTCTAGAACAGAAAGTT+GGG 0.490872 3_1:-82051147 Msa0380390:CDS
GGCTTAACAGTTCCACATGG+TGG 0.491941 3_1:-82051311 Msa0380390:intron
ACTTTCTGTTCTAGAGATCT+GGG 0.492366 3_1:+82051151 None:intergenic
GCAAGAGATTGGGGAAATGA+TGG 0.494350 3_1:-82050846 Msa0380390:CDS
GGTGGGTAGGGATTCTGTCT+GGG 0.501734 3_1:+82053947 None:intergenic
TCTCAACCTATGCTCATTGG+TGG 0.502003 3_1:-82051855 Msa0380390:CDS
GGTAAAATTAGACAGAGGTA+AGG 0.503347 3_1:-82054240 Msa0380390:five_prime_UTR
AGTAAGAGAAAGCAAATGAA+GGG 0.503463 3_1:-82050450 None:intergenic
GGTGGATTAAACAGGCAGTT+CGG 0.505718 3_1:-82051837 Msa0380390:CDS
TCCATTGCCACTGGACCAGC+AGG 0.505748 3_1:-82053441 Msa0380390:CDS
TGAAGCTCTTACTCTTGCTA+AGG 0.508265 3_1:-82053610 Msa0380390:CDS
TAAAGTCATCCTCTTGGTTG+GGG 0.508635 3_1:+82053388 None:intergenic
AAAATACTGCTGCAAATGCT+TGG 0.508949 3_1:+82050754 None:intergenic
TTCTACAGATGAGGAGGAGG+AGG 0.510283 3_1:+82053677 None:intergenic
TGATTCTACAGATGAGGAGG+AGG 0.513896 3_1:+82053674 None:intergenic
TGGAGATTTGGTATGGATGA+TGG 0.516643 3_1:-82050884 Msa0380390:CDS
CATCATTAAAGTCATCCTCT+TGG 0.522501 3_1:+82053382 None:intergenic
ATCTGGTCCTGCTGGTCCAG+TGG 0.527770 3_1:+82053434 None:intergenic
CCCATTGAGCAAATGTGGGC+TGG 0.527803 3_1:+82052436 None:intergenic
GTTGTTCTTAAGTAACGCAA+TGG 0.530950 3_1:+82053168 None:intergenic
TGATGATGATGGCGGTGGGT+AGG 0.533434 3_1:+82053934 None:intergenic
TCAAGTCTGGTTCCACCACC+AGG 0.536953 3_1:-82053230 Msa0380390:CDS
GATTAAATGGAGATTTGGTA+TGG 0.540033 3_1:-82050891 Msa0380390:CDS
TTCTTATCCGAATGGGAAGG+GGG 0.540429 3_1:-82054132 Msa0380390:five_prime_UTR
CTTAACAGTTCCACATGGTG+GGG 0.543723 3_1:-82051309 Msa0380390:intron
GGTGGTTGTTGATTATGTTG+TGG 0.547660 3_1:+82053537 None:intergenic
AGACTGAAAGTTTAAGACTC+TGG 0.548233 3_1:+82051119 None:intergenic
TAAACAAAATGAAATTTGTA+CGG 0.548254 3_1:-82054311 Msa0380390:five_prime_UTR
CTTGAATAATGAAGAAAATG+TGG 0.549898 3_1:+82050652 None:intergenic
TTCCCATTCGGATAAGAAAA+GGG 0.550030 3_1:+82054137 None:intergenic
TGTAGCCCATTGAGCAAATG+TGG 0.553613 3_1:+82052431 None:intergenic
CTCAATGGGCTACAATGGCA+GGG 0.555592 3_1:-82052422 Msa0380390:CDS
TGGTTGTTGATTATGTTGTG+GGG 0.556371 3_1:+82053539 None:intergenic
CAATTAAGAAGGGTGAAGGA+AGG 0.557782 3_1:-82054261 Msa0380390:five_prime_UTR
TCTCAAATGGGTTCAACACA+TGG 0.558500 3_1:-82053484 Msa0380390:CDS
ATAATGATGTTTAAAATGGA+GGG 0.558653 3_1:-82050480 Msa0380390:three_prime_UTR
TCAGGGGTGGAAGGAAGTTG+CGG 0.559046 3_1:+82053516 None:intergenic
ATTTGCTCAATGGGCTACAA+TGG 0.559335 3_1:-82052427 Msa0380390:CDS
GAAGAAATTAAGTTCTCTGA+AGG 0.563158 3_1:-82053114 Msa0380390:CDS
GAAGACACTGCAAGAGATTG+GGG 0.566948 3_1:-82050855 Msa0380390:CDS
GGCTGCTGCAAAGCTTGCAA+AGG 0.568821 3_1:-82053589 Msa0380390:CDS
GAGAAGTATGATGCTTCTAA+GGG 0.570079 3_1:-82051886 Msa0380390:CDS
CAACTGGGCTGTCGATGAAG+AGG 0.570194 3_1:-82051204 Msa0380390:CDS
AAGTGATTCTACAGATGAGG+AGG 0.571659 3_1:+82053671 None:intergenic
GTTGTTGATTATGTTGTGGG+GGG 0.573629 3_1:+82053541 None:intergenic
AGATGAGATGAGATTAGATG+AGG 0.573865 3_1:+82054162 None:intergenic
GGTTGTTGATTATGTTGTGG+GGG 0.579454 3_1:+82053540 None:intergenic
AAGAGTCAGAGCTTCTGGGA+AGG 0.580062 3_1:-82053274 Msa0380390:CDS
GATGCTGTATCCATTGCCAC+TGG 0.580093 3_1:-82053450 Msa0380390:CDS
ACTAGTATAGATGCAAGATC+CGG 0.582105 3_1:-82053321 Msa0380390:CDS
TTTAATCCACCAATGAGCAT+AGG 0.584506 3_1:+82051849 None:intergenic
AATCACTTTCTGTTCAGTCA+AGG 0.588234 3_1:-82051813 Msa0380390:CDS
GAGTCTGCAAGATCTGGTCC+AGG 0.588401 3_1:-82052280 Msa0380390:intron
GGTTACAGGAAGGATGCCGC+GGG 0.590724 3_1:-82051924 Msa0380390:intron
CGAGGAACTTGAAGATGTAG+AGG 0.592036 3_1:-82053358 Msa0380390:CDS
CTTATCCGAATGGGAAGGGG+GGG 0.592421 3_1:-82054130 Msa0380390:five_prime_UTR
AAGAAGTGATTCTACAGATG+AGG 0.593743 3_1:+82053668 None:intergenic
TCTTATCCGAATGGGAAGGG+GGG 0.597773 3_1:-82054131 Msa0380390:five_prime_UTR
GCCTGAGAGACATAGGGCCA+AGG 0.601892 3_1:+82053705 None:intergenic
TTAACAGTTCCACATGGTGG+GGG 0.603234 3_1:-82051308 Msa0380390:intron
AAGAAGTTGCCGAAGCAACT+GGG 0.609388 3_1:-82051219 Msa0380390:CDS
TCAGTTGCTAAGAATTATCA+GGG 0.610615 3_1:-82052312 Msa0380390:CDS
AATCTGAAAACTCACCACCT+TGG 0.611811 3_1:-82053722 Msa0380390:CDS
GAGTTTGCCTGAGAGACATA+GGG 0.611941 3_1:+82053699 None:intergenic
GGGTTACAGGAAGGATGCCG+CGG 0.612454 3_1:-82051925 Msa0380390:intron
TCTGGGTTGCAGATGAATTG+TGG 0.622138 3_1:+82053964 None:intergenic
CAAGAGATTGGGGAAATGAT+GGG 0.622941 3_1:-82050845 Msa0380390:CDS
GATTTGGTATGGATGATGGA+AGG 0.625281 3_1:-82050880 Msa0380390:CDS
GGATGACTTTAATGATGTCG+AGG 0.634731 3_1:-82053376 Msa0380390:CDS
TCAATGGGCTACAATGGCAG+GGG 0.637790 3_1:-82052421 Msa0380390:CDS
TGTTCGGAGAAAGGATAATG+TGG 0.639946 3_1:-82054011 Msa0380390:exon
TCACATTAGCCCCAACCAAG+AGG 0.641102 3_1:-82053397 Msa0380390:CDS
GAACAACAACTAGAACTACA+AGG 0.641229 3_1:-82053152 Msa0380390:CDS
AAAGCGTGTTCGTACACAAG+AGG 0.653089 3_1:-82053205 Msa0380390:CDS
AGGAAGGTAAAATTAGACAG+AGG 0.653464 3_1:-82054245 Msa0380390:five_prime_UTR
GAATAATGAAGAAAATGTGG+AGG 0.655093 3_1:+82050655 None:intergenic
GGGGTGGAAGGAAGTTGCGG+TGG 0.664288 3_1:+82053519 None:intergenic
GGCAACTTACAAAGTGAAGG+AGG 0.666025 3_1:-82051287 Msa0380390:CDS
TGAGAGACATAGGGCCAAGG+TGG 0.668285 3_1:+82053708 None:intergenic
CTGCACCTCTTACAAGCCCG+CGG 0.671463 3_1:+82051908 None:intergenic
TTTGGCTTAACAGTTCCACA+TGG 0.676694 3_1:-82051314 Msa0380390:intron
GTAGCCCATTGAGCAAATGT+GGG 0.718383 3_1:+82052432 None:intergenic
AGGTAAGGAATTGAGTGACG+AGG 0.724366 3_1:-82054225 Msa0380390:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAGTTTTCAATTAAGA+AGG - chr3_1:82050489-82050508 Msa0380390:three_prime_UTR 15.0%
!!! AAAAAGTTTTCAATTAAGAA+GGG - chr3_1:82050490-82050509 Msa0380390:three_prime_UTR 15.0%
!! AAGATATAACGATAAATATT+GGG + chr3_1:82051924-82051943 None:intergenic 15.0%
!!! ATGACAAATTTTAAAACTAT+AGG - chr3_1:82052594-82052613 Msa0380390:intron 15.0%
!! TAGTTAGTTAGTTAATTGTT+CGG - chr3_1:82050734-82050753 Msa0380390:exon 20.0%
!!! ATTTGAGAAGTAAATTTTCA+GGG + chr3_1:82051265-82051284 None:intergenic 20.0%
!! TGAAAATTTACTTCTCAAAT+GGG - chr3_1:82051265-82051284 Msa0380390:CDS 20.0%
!! GAAGATATAACGATAAATAT+TGG + chr3_1:82051925-82051944 None:intergenic 20.0%
!! GAAAGAATATTAATAGTGAA+AGG - chr3_1:82052062-82052081 Msa0380390:intron 20.0%
!!! ATAATTCAAACGTTTTCTTA+GGG + chr3_1:82052378-82052397 None:intergenic 20.0%
!!! ATATAATTTGAAATATGCAC+TGG - chr3_1:82052568-82052587 Msa0380390:intron 20.0%
!!! TATAATTTGAAATATGCACT+GGG - chr3_1:82052569-82052588 Msa0380390:intron 20.0%
!!! AGACTTTTTTGCAATATTTT+TGG - chr3_1:82053429-82053448 Msa0380390:CDS 20.0%
!!! TATTCATTTTTCTGATACAT+TGG - chr3_1:82053717-82053736 Msa0380390:CDS 20.0%
!! ATAAAAAGAACAAAGATATC+AGG + chr3_1:82054076-82054095 None:intergenic 20.0%
!! TTATTCAAGAGAAAACAAAA+AGG - chr3_1:82054123-82054142 Msa0380390:five_prime_UTR 20.0%
!! AAAAAATAATGATGAACTCT+TGG + chr3_1:82054200-82054219 None:intergenic 20.0%
!!! ATCATTATTTTTTTTGTACG+TGG - chr3_1:82054207-82054226 Msa0380390:five_prime_UTR 20.0%
!!! ATTACTTTCTCCAATTTTTA+AGG + chr3_1:82054254-82054273 None:intergenic 20.0%
!! AGAGATAATGATGTTTAAAA+TGG - chr3_1:82054277-82054296 Msa0380390:five_prime_UTR 20.0%
!!! ATAATGATGTTTAAAATGGA+GGG - chr3_1:82054281-82054300 Msa0380390:five_prime_UTR 20.0%
! AAATGAAATTTGTACGGTAT+TGG - chr3_1:82050456-82050475 Msa0380390:three_prime_UTR 25.0%
! TCATTTCATTCATTCATTCA+AGG + chr3_1:82050706-82050725 None:intergenic 25.0%
!!! TGTCTTGTAATTGTTGTTTT+GGG + chr3_1:82050957-82050976 None:intergenic 25.0%
!! TATTTTGTCTTCTTCATCAA+CGG - chr3_1:82050980-82050999 Msa0380390:CDS 25.0%
!! TTTGAGAAGTAAATTTTCAG+GGG + chr3_1:82051264-82051283 None:intergenic 25.0%
!! CATTTGAGAAGTAAATTTTC+AGG + chr3_1:82051266-82051285 None:intergenic 25.0%
! CTGAAAATTTACTTCTCAAA+TGG - chr3_1:82051264-82051283 Msa0380390:CDS 25.0%
! TTCAGAGAACTTAATTTCTT+CGG + chr3_1:82051648-82051667 None:intergenic 25.0%
!!! AGACTTTTGTTATAAAACCT+AGG + chr3_1:82051709-82051728 None:intergenic 25.0%
!! AAAGCTTGTTTAGAACAATA+TGG - chr3_1:82051843-82051862 Msa0380390:CDS 25.0%
! ATCAACTGAATTATCAATCT+AGG - chr3_1:82052123-82052142 Msa0380390:intron 25.0%
! TATGAGATCCTGAATTATAT+TGG + chr3_1:82052261-82052280 None:intergenic 25.0%
!! CATAATTCAAACGTTTTCTT+AGG + chr3_1:82052379-82052398 None:intergenic 25.0%
! CTAAGAAAACGTTTGAATTA+TGG - chr3_1:82052377-82052396 Msa0380390:CDS 25.0%
!! TTTCTAGCAAAATATTGTAC+AGG + chr3_1:82052517-82052536 None:intergenic 25.0%
!! CAATATTTTGCTAGAAAGTA+CGG - chr3_1:82052520-82052539 Msa0380390:intron 25.0%
! AACACATCTTAAATCAAAAG+AGG - chr3_1:82052658-82052677 Msa0380390:intron 25.0%
! ATAGTTAAATGGTTGATTAC+TGG + chr3_1:82052808-82052827 None:intergenic 25.0%
!!! ACCATTTAACTATTTTTCGT+TGG - chr3_1:82052815-82052834 Msa0380390:intron 25.0%
!!! CCATTTAACTATTTTTCGTT+GGG - chr3_1:82052816-82052835 Msa0380390:intron 25.0%
! AAGATAAAGATAATACTCAC+TGG + chr3_1:82052986-82053005 None:intergenic 25.0%
! AATGAAAATATTTCCATGCA+TGG + chr3_1:82053026-82053045 None:intergenic 25.0%
!! TTGGCAATTTTCAAATAAAC+AGG + chr3_1:82053050-82053069 None:intergenic 25.0%
! CACAAATTTGAACAAGATTA+GGG + chr3_1:82053670-82053689 None:intergenic 25.0%
! TCAGAAAAATGAATATCACA+TGG + chr3_1:82053712-82053731 None:intergenic 25.0%
! AGCTAACTTCAATATTTGAT+GGG + chr3_1:82054043-82054062 None:intergenic 25.0%
! AAGCTAACTTCAATATTTGA+TGG + chr3_1:82054044-82054063 None:intergenic 25.0%
!! TATTGAAGTTAGCTTATTAC+AGG - chr3_1:82054049-82054068 Msa0380390:five_prime_UTR 25.0%
! CTTGAATAATGAAGAAAATG+TGG + chr3_1:82054112-82054131 None:intergenic 25.0%
!!! AAGGTTATTTTCAGTATACT+AGG - chr3_1:82054142-82054161 Msa0380390:five_prime_UTR 25.0%
!!! ATTATTTTTTTTGTACGTGG+TGG - chr3_1:82054210-82054229 Msa0380390:five_prime_UTR 25.0%
!! GATAATGATGTTTAAAATGG+AGG - chr3_1:82054280-82054299 Msa0380390:five_prime_UTR 25.0%
! TTTTCAATTAAGAAGGGTGA+AGG - chr3_1:82050496-82050515 Msa0380390:three_prime_UTR 30.0%
TTAGTTAATTGTTCGGAGAA+AGG - chr3_1:82050741-82050760 Msa0380390:exon 30.0%
!!! GTGTCTTGTAATTGTTGTTT+TGG + chr3_1:82050958-82050977 None:intergenic 30.0%
! GAGCATCAAATTTGAAATCA+AGG + chr3_1:82051010-82051029 None:intergenic 30.0%
TGAAGATGTTCCATTATATC+TGG + chr3_1:82051347-82051366 None:intergenic 30.0%
GAAGAAATTAAGTTCTCTGA+AGG - chr3_1:82051647-82051666 Msa0380390:intron 30.0%
!! TATAAAACCTAGGTTCTAAG+TGG + chr3_1:82051699-82051718 None:intergenic 30.0%
ATAACAAAAGTCTACTATCG+CGG - chr3_1:82051716-82051735 Msa0380390:intron 30.0%
CGATAAATATTGGGTGATTT+AGG + chr3_1:82051915-82051934 None:intergenic 30.0%
! TGTAACATTCTTTCCTTTTC+TGG + chr3_1:82052017-82052036 None:intergenic 30.0%
ATAACTGTTCATTTGATCAC+AGG - chr3_1:82052040-82052059 Msa0380390:intron 30.0%
ATCAGTTGCTAAGAATTATC+AGG - chr3_1:82052448-82052467 Msa0380390:CDS 30.0%
TCAGTTGCTAAGAATTATCA+GGG - chr3_1:82052449-82052468 Msa0380390:CDS 30.0%
TTTCAAATTATATCCGTGTG+TGG + chr3_1:82052561-82052580 None:intergenic 30.0%
CATGTTGAATATCACAAGAA+TGG + chr3_1:82052748-82052767 None:intergenic 30.0%
CATTCTTGTGATATTCAACA+TGG - chr3_1:82052746-82052765 Msa0380390:intron 30.0%
CCCAACGAAAAATAGTTAAA+TGG + chr3_1:82052819-82052838 None:intergenic 30.0%
! CTCTATGAGCTTCTATTTTA+CGG + chr3_1:82053098-82053117 None:intergenic 30.0%
!! ATGTTGGTTCAACAAAAACA+AGG - chr3_1:82053162-82053181 Msa0380390:CDS 30.0%
TCGTTGAACAATCATCAATT+AGG - chr3_1:82053238-82053257 Msa0380390:CDS 30.0%
ACTATCTATAAAGTGGTACA+CGG - chr3_1:82053366-82053385 Msa0380390:CDS 30.0%
AAACAGTTGTACAGTGAAAA+TGG - chr3_1:82053502-82053521 Msa0380390:CDS 30.0%
GCACAAATTTGAACAAGATT+AGG + chr3_1:82053671-82053690 None:intergenic 30.0%
CATTAAGCAGTTCATGAAAA+AGG - chr3_1:82053801-82053820 Msa0380390:CDS 30.0%
! GATTAAATGGAGATTTGGTA+TGG - chr3_1:82053870-82053889 Msa0380390:intron 30.0%
! AAATTGAGTCATGTGCTTTT+AGG - chr3_1:82053962-82053981 Msa0380390:CDS 30.0%
GAATAATGAAGAAAATGTGG+AGG + chr3_1:82054109-82054128 None:intergenic 30.0%
!!! CAATTTTTAAGGCTCTTTTC+TGG + chr3_1:82054243-82054262 None:intergenic 30.0%
CAGAAAAGAGCCTTAAAAAT+TGG - chr3_1:82054241-82054260 Msa0380390:five_prime_UTR 30.0%
AGGAAGGTAAAATTAGACAG+AGG - chr3_1:82050516-82050535 Msa0380390:three_prime_UTR 35.0%
GGTAAAATTAGACAGAGGTA+AGG - chr3_1:82050521-82050540 Msa0380390:three_prime_UTR 35.0%
AGATGAGATGAGATTAGATG+AGG + chr3_1:82050602-82050621 None:intergenic 35.0%
TTCCCATTCGGATAAGAAAA+GGG + chr3_1:82050627-82050646 None:intergenic 35.0%
! TTTTCTTATCCGAATGGGAA+GGG - chr3_1:82050627-82050646 Msa0380390:three_prime_UTR 35.0%
! AGAGATGATGATGATGATGA+TGG + chr3_1:82050841-82050860 None:intergenic 35.0%
AAGAAGTGATTCTACAGATG+AGG + chr3_1:82051096-82051115 None:intergenic 35.0%
! TGGTTGTTGATTATGTTGTG+GGG + chr3_1:82051225-82051244 None:intergenic 35.0%
! GTGGTTGTTGATTATGTTGT+GGG + chr3_1:82051226-82051245 None:intergenic 35.0%
TTAAAGTCATCCTCTTGGTT+GGG + chr3_1:82051377-82051396 None:intergenic 35.0%
ATTAAAGTCATCCTCTTGGT+TGG + chr3_1:82051378-82051397 None:intergenic 35.0%
CATCATTAAAGTCATCCTCT+TGG + chr3_1:82051382-82051401 None:intergenic 35.0%
ACTAGTATAGATGCAAGATC+CGG - chr3_1:82051440-82051459 Msa0380390:intron 35.0%
!!! TTCTGGCTTTTCTTTCTGTT+TGG + chr3_1:82051469-82051488 None:intergenic 35.0%
GTTGTTCTTAAGTAACGCAA+TGG + chr3_1:82051596-82051615 None:intergenic 35.0%
GAACAACAACTAGAACTACA+AGG - chr3_1:82051609-82051628 Msa0380390:intron 35.0%
GAGAACTTAATTTCTTCGGA+TGG + chr3_1:82051644-82051663 None:intergenic 35.0%
! TAAGTTCTCTGAAGGAATAC+AGG - chr3_1:82051655-82051674 Msa0380390:intron 35.0%
! ATCAAGAGCATATGAGAGAA+TGG + chr3_1:82051880-82051899 None:intergenic 35.0%
ATATATCTCAGTGCCAGAAA+AGG - chr3_1:82052001-82052020 Msa0380390:intron 35.0%
AATTATATTGGCAGGAGAAG+AGG + chr3_1:82052249-82052268 None:intergenic 35.0%
TTCTCCTGCCAATATAATTC+AGG - chr3_1:82052250-82052269 Msa0380390:intron 35.0%
AGATCCTGAATTATATTGGC+AGG + chr3_1:82052257-82052276 None:intergenic 35.0%
AAAGCTCGAAAAACTTCAAG+AGG - chr3_1:82052280-82052299 Msa0380390:intron 35.0%
CTAAGAATTATCAGGGATCT+GGG - chr3_1:82052456-82052475 Msa0380390:CDS 35.0%
TGTACAGGTGAAAATATACC+TGG + chr3_1:82052502-82052521 None:intergenic 35.0%
! TAGAAAGTACGGACACTAAA+GGG - chr3_1:82052531-82052550 Msa0380390:intron 35.0%
TTAGTATGAGTCATTGCACT+TGG - chr3_1:82052697-82052716 Msa0380390:intron 35.0%
!! ACTATTTTTCGTTGGGTTAC+AGG - chr3_1:82052823-82052842 Msa0380390:intron 35.0%
! AGAGAAGTATGATGCTTCTA+AGG - chr3_1:82052874-82052893 Msa0380390:intron 35.0%
! GAGAAGTATGATGCTTCTAA+GGG - chr3_1:82052875-82052894 Msa0380390:intron 35.0%
TTTAATCCACCAATGAGCAT+AGG + chr3_1:82052915-82052934 None:intergenic 35.0%
AATCACTTTCTGTTCAGTCA+AGG - chr3_1:82052948-82052967 Msa0380390:intron 35.0%
TATTTCTTTCTGACCATGCA+TGG - chr3_1:82053010-82053029 Msa0380390:intron 35.0%
! AGAAGTCATTGTTGGAGTTT+TGG + chr3_1:82053069-82053088 None:intergenic 35.0%
! TGAGCTTCTATTTTACGGAA+TGG + chr3_1:82053093-82053112 None:intergenic 35.0%
TTGTTGAACCAACATCAATC+AGG + chr3_1:82053157-82053176 None:intergenic 35.0%
ATGATTGTTCAACGAGAACA+GGG + chr3_1:82053233-82053252 None:intergenic 35.0%
ACCACTTTATAGATAGTCCA+CGG + chr3_1:82053363-82053382 None:intergenic 35.0%
!! ACTTTCTGTTCTAGAGATCT+GGG + chr3_1:82053613-82053632 None:intergenic 35.0%
!! AACTTTCTGTTCTAGAGATC+TGG + chr3_1:82053614-82053633 None:intergenic 35.0%
!! AGATCTCTAGAACAGAAAGT+TGG - chr3_1:82053613-82053632 Msa0380390:CDS 35.0%
!! GATCTCTAGAACAGAAAGTT+GGG - chr3_1:82053614-82053633 Msa0380390:CDS 35.0%
! AGACTGAAAGTTTAAGACTC+TGG + chr3_1:82053645-82053664 None:intergenic 35.0%
CTTGTTCAAATTTGTGCTTC+AGG - chr3_1:82053674-82053693 Msa0380390:CDS 35.0%
! TTAATCACCTGTTTCTCTCT+AGG + chr3_1:82053856-82053875 None:intergenic 35.0%
GAGAGAAACAGGTGATTAAA+TGG - chr3_1:82053857-82053876 Msa0380390:intron 35.0%
CAGGTGATTAAATGGAGATT+TGG - chr3_1:82053865-82053884 Msa0380390:intron 35.0%
AAAATACTGCTGCAAATGCT+TGG + chr3_1:82054010-82054029 None:intergenic 35.0%
CAATTAAGAAGGGTGAAGGA+AGG - chr3_1:82050500-82050519 Msa0380390:three_prime_UTR 40.0%
! TCACCCTTTTCTTATCCGAA+TGG - chr3_1:82050621-82050640 Msa0380390:three_prime_UTR 40.0%
! CACCCTTTTCTTATCCGAAT+GGG - chr3_1:82050622-82050641 Msa0380390:three_prime_UTR 40.0%
CTTCCCATTCGGATAAGAAA+AGG + chr3_1:82050628-82050647 None:intergenic 40.0%
! CTTTTCTTATCCGAATGGGA+AGG - chr3_1:82050626-82050645 Msa0380390:three_prime_UTR 40.0%
TTTCTTATCCGAATGGGAAG+GGG - chr3_1:82050628-82050647 Msa0380390:three_prime_UTR 40.0%
TGTTCGGAGAAAGGATAATG+TGG - chr3_1:82050750-82050769 Msa0380390:CDS 40.0%
!! GATGATGATGATGATGATGG+CGG + chr3_1:82050838-82050857 None:intergenic 40.0%
AATCTGAAAACTCACCACCT+TGG - chr3_1:82051039-82051058 Msa0380390:intron 40.0%
AAGTGATTCTACAGATGAGG+AGG + chr3_1:82051093-82051112 None:intergenic 40.0%
TGAAGCTCTTACTCTTGCTA+AGG - chr3_1:82051151-82051170 Msa0380390:CDS 40.0%
! GTTGTTGATTATGTTGTGGG+GGG + chr3_1:82051223-82051242 None:intergenic 40.0%
! GGTTGTTGATTATGTTGTGG+GGG + chr3_1:82051224-82051243 None:intergenic 40.0%
! GGTGGTTGTTGATTATGTTG+TGG + chr3_1:82051227-82051246 None:intergenic 40.0%
!! AGTAAATTTTCAGGGGTGGA+AGG + chr3_1:82051257-82051276 None:intergenic 40.0%
!! GAGAAGTAAATTTTCAGGGG+TGG + chr3_1:82051261-82051280 None:intergenic 40.0%
! TCTCAAATGGGTTCAACACA+TGG - chr3_1:82051277-82051296 Msa0380390:CDS 40.0%
TAAAGTCATCCTCTTGGTTG+GGG + chr3_1:82051376-82051395 None:intergenic 40.0%
GGATGACTTTAATGATGTCG+AGG - chr3_1:82051385-82051404 Msa0380390:intron 40.0%
! TGGCTTTTCTTTCTGTTTGG+CGG + chr3_1:82051466-82051485 None:intergenic 40.0%
TGCATTACCACTTAGAACCT+AGG - chr3_1:82051689-82051708 Msa0380390:intron 40.0%
AAGAACTGCAGTCTCAATGT+TGG + chr3_1:82051768-82051787 None:intergenic 40.0%
TACCACAATCGTTAGTGTGA+CGG - chr3_1:82051813-82051832 Msa0380390:CDS 40.0%
GGAGAAGAGGCAAATGAATT+AGG + chr3_1:82052236-82052255 None:intergenic 40.0%
!! ATTTGCTCAATGGGCTACAA+TGG - chr3_1:82052334-82052353 Msa0380390:CDS 40.0%
GCTAAGAATTATCAGGGATC+TGG - chr3_1:82052455-82052474 Msa0380390:CDS 40.0%
! CTAGAAAGTACGGACACTAA+AGG - chr3_1:82052530-82052549 Msa0380390:intron 40.0%
! AGAAAGTACGGACACTAAAG+GGG - chr3_1:82052532-82052551 Msa0380390:intron 40.0%
AAGAGTCCACACTTCTTCAA+TGG - chr3_1:82052780-82052799 Msa0380390:intron 40.0%
! TTTTTCGTTGGGTTACAGGA+AGG - chr3_1:82052827-82052846 Msa0380390:intron 40.0%
AGTTCTCAACCTATGCTCAT+TGG - chr3_1:82052903-82052922 Msa0380390:intron 40.0%
!! TGCTCATTGGTGGATTAAAC+AGG - chr3_1:82052916-82052935 Msa0380390:intron 40.0%
GACATTGACCTGATTGATGT+TGG - chr3_1:82053146-82053165 Msa0380390:CDS 40.0%
TGATTGTTCAACGAGAACAG+GGG + chr3_1:82053232-82053251 None:intergenic 40.0%
GATGATTGTTCAACGAGAAC+AGG + chr3_1:82053234-82053253 None:intergenic 40.0%
ACAATCAACGAATGTTGACG+CGG + chr3_1:82053313-82053332 None:intergenic 40.0%
ATAAGTACACCAATTCACCG+TGG - chr3_1:82053343-82053362 Msa0380390:CDS 40.0%
ATAGATAGTCCACGGTGAAT+TGG + chr3_1:82053355-82053374 None:intergenic 40.0%
! ACCGTGGACTATCTATAAAG+TGG - chr3_1:82053359-82053378 Msa0380390:CDS 40.0%
! TTTGGCTTAACAGTTCCACA+TGG - chr3_1:82053447-82053466 Msa0380390:CDS 40.0%
CTGCTTAATGAGCTGTTCTT+CGG + chr3_1:82053791-82053810 None:intergenic 40.0%
CATGAAAAAGGACCTGGAAA+AGG - chr3_1:82053813-82053832 Msa0380390:intron 40.0%
! AAAGGACCTGGAAAAGGTAT+TGG - chr3_1:82053819-82053838 Msa0380390:intron 40.0%
TCTCAATCCTAGAGAGAAAC+AGG - chr3_1:82053846-82053865 Msa0380390:intron 40.0%
! TGGAGATTTGGTATGGATGA+TGG - chr3_1:82053877-82053896 Msa0380390:intron 40.0%
!! GATTTGGTATGGATGATGGA+AGG - chr3_1:82053881-82053900 Msa0380390:intron 40.0%
ATGAAGACACTGCAAGAGAT+TGG - chr3_1:82053904-82053923 Msa0380390:intron 40.0%
TGAAGACACTGCAAGAGATT+GGG - chr3_1:82053905-82053924 Msa0380390:intron 40.0%
CAAGAGATTGGGGAAATGAT+GGG - chr3_1:82053916-82053935 Msa0380390:CDS 40.0%
!! GGAAATGATGGGTGTAAGTA+GGG - chr3_1:82053927-82053946 Msa0380390:CDS 40.0%
AGGTAAGGAATTGAGTGACG+AGG - chr3_1:82050536-82050555 Msa0380390:three_prime_UTR 45.0%
TTCTTATCCGAATGGGAAGG+GGG - chr3_1:82050629-82050648 Msa0380390:three_prime_UTR 45.0%
CGCTTCTTCTCTTCTCTTCT+GGG + chr3_1:82050678-82050697 None:intergenic 45.0%
ACGCTTCTTCTCTTCTCTTC+TGG + chr3_1:82050679-82050698 None:intergenic 45.0%
TCTGGGTTGCAGATGAATTG+TGG + chr3_1:82050800-82050819 None:intergenic 45.0%
!! ATGATGATGATGATGGCGGT+GGG + chr3_1:82050834-82050853 None:intergenic 45.0%
! GAGTTTTCAGATTCAGCAGG+AGG + chr3_1:82051032-82051051 None:intergenic 45.0%
! GGTGAGTTTTCAGATTCAGC+AGG + chr3_1:82051035-82051054 None:intergenic 45.0%
GAGTTTGCCTGAGAGACATA+GGG + chr3_1:82051065-82051084 None:intergenic 45.0%
TGATTCTACAGATGAGGAGG+AGG + chr3_1:82051090-82051109 None:intergenic 45.0%
GGCAATGGATACAGCATCTT+CGG + chr3_1:82051309-82051328 None:intergenic 45.0%
ACCAGCAGGACCAGATATAA+TGG - chr3_1:82051334-82051353 Msa0380390:intron 45.0%
TCCATTATATCTGGTCCTGC+TGG + chr3_1:82051338-82051357 None:intergenic 45.0%
CGAGGAACTTGAAGATGTAG+AGG - chr3_1:82051403-82051422 Msa0380390:intron 45.0%
! TTTTCTTTCTGTTTGGCGGC+CGG + chr3_1:82051462-82051481 None:intergenic 45.0%
CTTGAAGGAGACGATGTTTG+TGG + chr3_1:82051516-82051535 None:intergenic 45.0%
AACATCGTCTCCTTCAAGTC+TGG - chr3_1:82051518-82051537 Msa0380390:intron 45.0%
!!! TGTACGAACACGCTTTTTCC+TGG + chr3_1:82051552-82051571 None:intergenic 45.0%
AAAGCGTGTTCGTACACAAG+AGG - chr3_1:82051556-82051575 Msa0380390:intron 45.0%
GAGGACCTTGCAGAAAAATG+TGG - chr3_1:82052299-82052318 Msa0380390:CDS 45.0%
GACCTTGCAGAAAAATGTGG+CGG - chr3_1:82052302-82052321 Msa0380390:CDS 45.0%
GTAGCCCATTGAGCAAATGT+GGG + chr3_1:82052332-82052351 None:intergenic 45.0%
TGTAGCCCATTGAGCAAATG+TGG + chr3_1:82052333-82052352 None:intergenic 45.0%
! GAAAGTACGGACACTAAAGG+GGG - chr3_1:82052533-82052552 Msa0380390:intron 45.0%
CTGGAACCATTGAAGAAGTG+TGG + chr3_1:82052789-82052808 None:intergenic 45.0%
TCTCAACCTATGCTCATTGG+TGG - chr3_1:82052906-82052925 Msa0380390:intron 45.0%
!! GGTGGATTAAACAGGCAGTT+CGG - chr3_1:82052924-82052943 Msa0380390:intron 45.0%
GGAATGGCAGAAGTCATTGT+TGG + chr3_1:82053077-82053096 None:intergenic 45.0%
GATTGTTCAACGAGAACAGG+GGG + chr3_1:82053231-82053250 None:intergenic 45.0%
! AGGAGACCATGAGCTTCTTT+TGG - chr3_1:82053284-82053303 Msa0380390:CDS 45.0%
! GGAGACCATGAGCTTCTTTT+GGG - chr3_1:82053285-82053304 Msa0380390:CDS 45.0%
! GAGACCATGAGCTTCTTTTG+GGG - chr3_1:82053286-82053305 Msa0380390:CDS 45.0%
! AGACCATGAGCTTCTTTTGG+GGG - chr3_1:82053287-82053306 Msa0380390:CDS 45.0%
GCTTAACAGTTCCACATGGT+GGG - chr3_1:82053451-82053470 Msa0380390:CDS 45.0%
CTTAACAGTTCCACATGGTG+GGG - chr3_1:82053452-82053471 Msa0380390:CDS 45.0%
TTAACAGTTCCACATGGTGG+GGG - chr3_1:82053453-82053472 Msa0380390:CDS 45.0%
GGCAACTTACAAAGTGAAGG+AGG - chr3_1:82053474-82053493 Msa0380390:CDS 45.0%
AAGAAGTTGCCGAAGCAACT+GGG - chr3_1:82053542-82053561 Msa0380390:CDS 45.0%
! TAGAGATCTGGGAGCTTTTG+GGG + chr3_1:82053602-82053621 None:intergenic 45.0%
! CTAGAGATCTGGGAGCTTTT+GGG + chr3_1:82053603-82053622 None:intergenic 45.0%
! TCTAGAGATCTGGGAGCTTT+TGG + chr3_1:82053604-82053623 None:intergenic 45.0%
GCAGTTCATGAAAAAGGACC+TGG - chr3_1:82053807-82053826 Msa0380390:CDS 45.0%
! GACTGTCCAATACCTTTTCC+AGG + chr3_1:82053828-82053847 None:intergenic 45.0%
GAAGACACTGCAAGAGATTG+GGG - chr3_1:82053906-82053925 Msa0380390:intron 45.0%
GCAAGAGATTGGGGAAATGA+TGG - chr3_1:82053915-82053934 Msa0380390:CDS 45.0%
!! GGGAAATGATGGGTGTAAGT+AGG - chr3_1:82053926-82053945 Msa0380390:CDS 45.0%
TCTTATCCGAATGGGAAGGG+GGG - chr3_1:82050630-82050649 Msa0380390:three_prime_UTR 50.0%
!! GATGATGATGATGATGGCGG+TGG + chr3_1:82050835-82050854 None:intergenic 50.0%
GGAGTTTGCCTGAGAGACAT+AGG + chr3_1:82051066-82051085 None:intergenic 50.0%
TTCTACAGATGAGGAGGAGG+AGG + chr3_1:82051087-82051106 None:intergenic 50.0%
GATGCTGTATCCATTGCCAC+TGG - chr3_1:82051311-82051330 Msa0380390:intron 50.0%
TCACATTAGCCCCAACCAAG+AGG - chr3_1:82051364-82051383 Msa0380390:intron 50.0%
CCAGAAGAGTCAGAGCTTCT+GGG - chr3_1:82051483-82051502 Msa0380390:intron 50.0%
! AAGAGTCAGAGCTTCTGGGA+AGG - chr3_1:82051487-82051506 Msa0380390:intron 50.0%
!!! AACACGCTTTTTCCTGGTGG+TGG + chr3_1:82051546-82051565 None:intergenic 50.0%
!!! ACGAACACGCTTTTTCCTGG+TGG + chr3_1:82051549-82051568 None:intergenic 50.0%
AGTCTACTATCGCGGCATCA+TGG - chr3_1:82051724-82051743 Msa0380390:intron 50.0%
TGCCGTCACACTAACGATTG+TGG + chr3_1:82051818-82051837 None:intergenic 50.0%
CCAGCCCACATTTGCTCAAT+GGG - chr3_1:82052325-82052344 Msa0380390:CDS 50.0%
!! CTCAATGGGCTACAATGGCA+GGG - chr3_1:82052339-82052358 Msa0380390:CDS 50.0%
!! TCAATGGGCTACAATGGCAG+GGG - chr3_1:82052340-82052359 Msa0380390:CDS 50.0%
TGGGATGAGTCTGCAAGATC+TGG - chr3_1:82052475-82052494 Msa0380390:CDS 50.0%
AATGAGGATGAGGAGGACTG+CGG + chr3_1:82053121-82053140 None:intergenic 50.0%
TCCTCCTCATCCTCATTGGT+GGG - chr3_1:82053124-82053143 Msa0380390:CDS 50.0%
ATGTCCCACCAATGAGGATG+AGG + chr3_1:82053131-82053150 None:intergenic 50.0%
AGGTCAATGTCCCACCAATG+AGG + chr3_1:82053137-82053156 None:intergenic 50.0%
GGCTTAACAGTTCCACATGG+TGG - chr3_1:82053450-82053469 Msa0380390:CDS 50.0%
GGGGGCAACTTACAAAGTGA+AGG - chr3_1:82053471-82053490 Msa0380390:CDS 50.0%
TCGGCAACTTCTTCATCGTC+AGG + chr3_1:82053535-82053554 None:intergenic 50.0%
GAAGAAGTTGCCGAAGCAAC+TGG - chr3_1:82053541-82053560 Msa0380390:CDS 50.0%
!!! TGGGAGCTTTTGGGGTCAAA+AGG + chr3_1:82053594-82053613 None:intergenic 50.0%
ATTGGTGTGCGTTTCTGACC+AGG - chr3_1:82053735-82053754 Msa0380390:CDS 50.0%
CAGGATCAGCAAGTACTTCC+TGG + chr3_1:82053756-82053775 None:intergenic 50.0%
! TCTTCGGCTGTTTCAGCTTC+AGG + chr3_1:82053775-82053794 None:intergenic 50.0%
CTTATCCGAATGGGAAGGGG+GGG - chr3_1:82050631-82050650 Msa0380390:three_prime_UTR 55.0%
AACATCCCCCCCTTCCCATT+CGG + chr3_1:82050639-82050658 None:intergenic 55.0%
GGTGGGTAGGGATTCTGTCT+GGG + chr3_1:82050817-82050836 None:intergenic 55.0%
!! GATGATGATGGCGGTGGGTA+GGG + chr3_1:82050829-82050848 None:intergenic 55.0%
!! TGATGATGATGGCGGTGGGT+AGG + chr3_1:82050830-82050849 None:intergenic 55.0%
TGAGAGACATAGGGCCAAGG+TGG + chr3_1:82051056-82051075 None:intergenic 55.0%
ACCTTGGCCCTATGTCTCTC+AGG - chr3_1:82051055-82051074 Msa0380390:intron 55.0%
GGCTGCTGCAAAGCTTGCAA+AGG - chr3_1:82051172-82051191 Msa0380390:CDS 55.0%
TCAGGGGTGGAAGGAAGTTG+CGG + chr3_1:82051248-82051267 None:intergenic 55.0%
GCCAGAAGAGTCAGAGCTTC+TGG - chr3_1:82051482-82051501 Msa0380390:intron 55.0%
! CCCAGAAGCTCTGACTCTTC+TGG + chr3_1:82051486-82051505 None:intergenic 55.0%
!! GGTGGTGGAACCAGACTTGA+AGG + chr3_1:82051531-82051550 None:intergenic 55.0%
! TCAAGTCTGGTTCCACCACC+AGG - chr3_1:82051531-82051550 Msa0380390:intron 55.0%
! GGCCGCCACATTTTTCTGCA+AGG + chr3_1:82052307-82052326 None:intergenic 55.0%
GCCAGCCCACATTTGCTCAA+TGG - chr3_1:82052324-82052343 Msa0380390:CDS 55.0%
CCCATTGAGCAAATGTGGGC+TGG + chr3_1:82052328-82052347 None:intergenic 55.0%
!! GCTCAATGGGCTACAATGGC+AGG - chr3_1:82052338-82052357 Msa0380390:CDS 55.0%
GAGTCTGCAAGATCTGGTCC+AGG - chr3_1:82052481-82052500 Msa0380390:CDS 55.0%
!! ACTAAAGGGGGCACCACACA+CGG - chr3_1:82052545-82052564 Msa0380390:intron 55.0%
GCAGTCCTCCTCATCCTCAT+TGG - chr3_1:82053120-82053139 Msa0380390:CDS 55.0%
GTCCTCCTCATCCTCATTGG+TGG - chr3_1:82053123-82053142 Msa0380390:CDS 55.0%
TCCCACCAATGAGGATGAGG+AGG + chr3_1:82053128-82053147 None:intergenic 55.0%
AGGTCACCATCTCAGTCGTG+CGG - chr3_1:82053258-82053277 Msa0380390:CDS 55.0%
TGTAAGTTGCCCCCACCATG+TGG + chr3_1:82053465-82053484 None:intergenic 55.0%
CATCGACAGCCCAGTTGCTT+CGG + chr3_1:82053554-82053573 None:intergenic 55.0%
CAACTGGGCTGTCGATGAAG+AGG - chr3_1:82053557-82053576 Msa0380390:CDS 55.0%
CGGTGGGTAGGGATTCTGTC+TGG + chr3_1:82050818-82050837 None:intergenic 60.0%
GCCTGAGAGACATAGGGCCA+AGG + chr3_1:82051059-82051078 None:intergenic 60.0%
TCCATTGCCACTGGACCAGC+AGG - chr3_1:82051320-82051339 Msa0380390:intron 60.0%
TCCTGCTGGTCCAGTGGCAA+TGG + chr3_1:82051324-82051343 None:intergenic 60.0%
ATCTGGTCCTGCTGGTCCAG+TGG + chr3_1:82051330-82051349 None:intergenic 60.0%
GGGTTACAGGAAGGATGCCG+CGG - chr3_1:82052836-82052855 Msa0380390:intron 60.0%
GGTTACAGGAAGGATGCCGC+GGG - chr3_1:82052837-82052856 Msa0380390:intron 60.0%
CTGCACCTCTTACAAGCCCG+CGG + chr3_1:82052856-82052875 None:intergenic 60.0%
CCTCATCCGCACGACTGAGA+TGG + chr3_1:82053267-82053286 None:intergenic 60.0%
CCATCTCAGTCGTGCGGATG+AGG - chr3_1:82053264-82053283 Msa0380390:CDS 60.0%
CGGCCCCCAAAAGAAGCTCA+TGG + chr3_1:82053293-82053312 None:intergenic 60.0%
GGGGTGGAAGGAAGTTGCGG+TGG + chr3_1:82051245-82051264 None:intergenic 65.0%
GGATGCCGCGGGCTTGTAAG+AGG - chr3_1:82052848-82052867 Msa0380390:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 82050453 82054330 82050453 ID=Msa0380390;Name=Msa0380390
chr3_1 mRNA 82050453 82054330 82050453 ID=Msa0380390-mRNA-1;Parent=Msa0380390;Name=Msa0380390-mRNA-1;_AED=0.07;_eAED=0.07;_QI=314|1|1|1|1|1|6|292|561
chr3_1 exon 82050453 82051026 82050453 ID=Msa0380390-mRNA-1:exon:20934;Parent=Msa0380390-mRNA-1
chr3_1 exon 82051123 82051323 82051123 ID=Msa0380390-mRNA-1:exon:20933;Parent=Msa0380390-mRNA-1
chr3_1 exon 82051798 82051938 82051798 ID=Msa0380390-mRNA-1:exon:20932;Parent=Msa0380390-mRNA-1
chr3_1 exon 82052281 82052511 82052281 ID=Msa0380390-mRNA-1:exon:20931;Parent=Msa0380390-mRNA-1
chr3_1 exon 82053107 82053831 82053107 ID=Msa0380390-mRNA-1:exon:20930;Parent=Msa0380390-mRNA-1
chr3_1 exon 82053911 82054330 82053911 ID=Msa0380390-mRNA-1:exon:20929;Parent=Msa0380390-mRNA-1
chr3_1 five_prime_UTR 82054017 82054330 82054017 ID=Msa0380390-mRNA-1:five_prime_utr;Parent=Msa0380390-mRNA-1
chr3_1 CDS 82053911 82054016 82053911 ID=Msa0380390-mRNA-1:cds;Parent=Msa0380390-mRNA-1
chr3_1 CDS 82053107 82053831 82053107 ID=Msa0380390-mRNA-1:cds;Parent=Msa0380390-mRNA-1
chr3_1 CDS 82052281 82052511 82052281 ID=Msa0380390-mRNA-1:cds;Parent=Msa0380390-mRNA-1
chr3_1 CDS 82051798 82051938 82051798 ID=Msa0380390-mRNA-1:cds;Parent=Msa0380390-mRNA-1
chr3_1 CDS 82051123 82051323 82051123 ID=Msa0380390-mRNA-1:cds;Parent=Msa0380390-mRNA-1
chr3_1 CDS 82050745 82051026 82050745 ID=Msa0380390-mRNA-1:cds;Parent=Msa0380390-mRNA-1
chr3_1 three_prime_UTR 82050453 82050744 82050453 ID=Msa0380390-mRNA-1:three_prime_utr;Parent=Msa0380390-mRNA-1
Gene Sequence

>Msa0380390

ATGTGGTCATCGTCGTCGTCGTGTTTATTGCCACAATTCATCTGCAACCCAGACAGAATCCCTACCCACCGCCATCATCATCATCATCATCTCTTTCTTCTTCAATCACCCAAAACAACAATTACAAGACACTGTATTTTGTCTTCTTCATCAACGGCACTCCTTGATTTCAAATTTGATGCTCCTCCTGCTGAATCTGAAAACTCACCACCTTGGCCCTATGTCTCTCAGGCAAACTCCTCCTCCTCCTCATCTGTAGAATCACTTCTTACTAGTGAAGACGCTGTTATAGCTGCTGCTGCTTCTGAAGCTCTTACTCTTGCTAAGGCTGCTGCAAAGCTTGCAAAGGATGCTACTCTCTTATTCAATAACAACCCCCCACAACATAATCAACAACCACCGCAACTTCCTTCCACCCCTGAAAATTTACTTCTCAAATGGGTTCAACACATGGAAGCAGCCGAAGATGCTGTATCCATTGCCACTGGACCAGCAGGACCAGATATAATGGAACATCTTCACATTAGCCCCAACCAAGAGGATGACTTTAATGATGTCGAGGAACTTGAAGATGTAGAGGAACAACTTTTCGATACTAGTATAGATGCAAGATCCGGCCGCCAAACAGAAAGAAAAGCCAGAAGAGTCAGAGCTTCTGGGAAGGCTGCCACAAACATCGTCTCCTTCAAGTCTGGTTCCACCACCAGGAAAAAGCGTGTTCGTACACAAGAGGTTGACTATTCTGATCCATTGCGTTACTTAAGAACAACAACTAGAACTACAAGGCTTCTCACTCCATCCGAAGAAATTAAGTTCTCTGAAGGAATACAGGATCTCATAAAGCTCGAAAAACTTCAAGAGGACCTTGCAGAAAAATGTGGCGGCCAGCCCACATTTGCTCAATGGGCTACAATGGCAGGGGTAGATCAAAAGACCCTAAGAAAACGTTTGAATTATGGTGTATTTTGCAAAGAAAAAATGATTAAAAGCAATATACGACTTGTCATATCAGTTGCTAAGAATTATCAGGGATCTGGGATGAGTCTGCAAGATCTGGTCCAGGAAGGATGCCGCGGGCTTGTAAGAGGTGCAGAGAAGTATGATGCTTCTAAGGGTTTTAAGTTCTCAACCTATGCTCATTGGTGGATTAAACAGGCAGTTCGGAAATCACTTTCTGTTCAGTCAAGGACTATTCGCTTGCCATTCCACATGGTGGGGGCAACTTACAAAGTGAAGGAGGCAAGAAAACAGTTGTACAGTGAAAATGGAAGACAACCTGACGATGAAGAAGTTGCCGAAGCAACTGGGCTGTCGATGAAGAGGCTTAGTGCTGTCCTTTTGACCCCAAAAGCTCCCAGATCTCTAGAACAGAAAGTTGGGATCAACCAGAGTCTTAAACTTTCAGAAGTACTTGCTGATCCTGAAGCTGAAACAGCCGAAGAACAGCTCATTAAGCAGTTCATGAAAAAGGACCTGGAAAAGGTATTGGACAGTCTCAATCCTAGAGAGAAACAGGTGATTAAATGGAGATTTGGTATGGATGATGGAAGGATGAAGACACTGCAAGAGATTGGGGAAATGATGGGTGTAAGTAGGGAGAGAATTAGACAAATTGAGTCATGTGCTTTTAGGAAGCTTAAAAATAAGAAGAGAGCCAAGCATTTGCAGCAGTATTTTGTTTCATAA

Protein sequence

>Msa0380390

MWSSSSSCLLPQFICNPDRIPTHRHHHHHHLFLLQSPKTTITRHCILSSSSTALLDFKFDAPPAESENSPPWPYVSQANSSSSSSVESLLTSEDAVIAAAASEALTLAKAAAKLAKDATLLFNNNPPQHNQQPPQLPSTPENLLLKWVQHMEAAEDAVSIATGPAGPDIMEHLHISPNQEDDFNDVEELEDVEEQLFDTSIDARSGRQTERKARRVRASGKAATNIVSFKSGSTTRKKRVRTQEVDYSDPLRYLRTTTRTTRLLTPSEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKVGINQSLKLSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIKWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRAKHLQQYFVS*