AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0179200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0179200 MtrunA17_Chr1g0212481 92.333 600 22 2 1 576 1 600 0.0 1142
Msa0179200 MtrunA17_Chr1g0152521 68.627 357 31 5 1 325 1 308 1.20e-161 464
Msa0179200 MtrunA17_Chr1g0152511 78.715 249 6 2 328 576 1 202 4.35e-131 381
Msa0179200 MtrunA17_Chr4g0039621 26.415 583 320 24 57 550 19 581 3.84e-41 159
Msa0179200 MtrunA17_Chr4g0068571 27.294 425 257 17 153 543 37 443 9.13e-23 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0179200 AT3G55400.1 71.570 605 133 4 1 566 1 605 0.0 880
Msa0179200 AT3G55400.2 72.816 515 103 3 1 478 1 515 0.0 766
Msa0179200 AT4G13780.1 25.175 572 327 20 57 545 20 573 2.08e-40 157

Find 189 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATGGCCGTATACCATTT+TGG 0.163191 1_4:-66630758 None:intergenic
CGACGCCATTGCTCGCTTTC+AGG 0.172482 1_4:+66627766 Msa0179200:CDS
AACGATTTGGTTAGTAAGTT+TGG 0.200559 1_4:+66632064 Msa0179200:CDS
GAGATGGAAATAGGGTTTAT+TGG 0.220234 1_4:-66627606 None:intergenic
TTCCTCAGAGAGGTGGAATT+TGG 0.232008 1_4:+66632109 Msa0179200:CDS
AGAAGAAGGGAGATGGAAAT+AGG 0.249938 1_4:-66627615 None:intergenic
TGGCAGGAAATCTTCTTAAT+AGG 0.253659 1_4:+66632334 Msa0179200:intron
TACGTTTCCATGCCGTTTAT+TGG 0.277442 1_4:+66630701 Msa0179200:CDS
TTTAATTTGATAGCGGCTAT+TGG 0.277602 1_4:+66627849 Msa0179200:intron
GAATCAGCTGGATGCATCTA+AGG 0.278513 1_4:+66627429 Msa0179200:five_prime_UTR
AAAGATGGCTGCACAAAGTT+TGG 0.304459 1_4:-66628976 None:intergenic
TTCCCGAGCATCCGTTGATT+GGG 0.310196 1_4:+66629767 Msa0179200:CDS
GTATGGTTTGATGCTTTACT+AGG 0.314469 1_4:+66629828 Msa0179200:CDS
TACGCTTGAACCAAACGATT+TGG 0.323345 1_4:+66632051 Msa0179200:CDS
TTACACAAATATTTATATAT+AGG 0.325314 1_4:+66633973 Msa0179200:three_prime_UTR
ATCAGCTTGTGAGGCTGTTC+TGG 0.327249 1_4:+66632993 Msa0179200:CDS
TACCAAGTGGGGTGGACTTA+AGG 0.328656 1_4:+66633711 Msa0179200:CDS
GAAACGGTGTTTAGTAAATC+AGG 0.339575 1_4:-66630174 None:intergenic
CCCAGGTTGCTGCTTCAAAT+TGG 0.340068 1_4:-66633608 None:intergenic
TTTCCCGAGCATCCGTTGAT+TGG 0.340690 1_4:+66629766 Msa0179200:CDS
TGGGCTAAGCCTTCCCAAAA+TGG 0.344820 1_4:+66630744 Msa0179200:CDS
CGTTAACGCCCCTCCTCATA+TGG 0.346271 1_4:+66627718 Msa0179200:CDS
TCTTTCCCGCAGATAACATT+AGG 0.357272 1_4:-66627476 None:intergenic
ATGCACAGCTTGGCTATTCC+AGG 0.357457 1_4:+66633583 Msa0179200:CDS
CCAGCTATGCTAATGTCTGC+TGG 0.359184 1_4:+66630724 Msa0179200:CDS
GAACTCAAGCTCGGAGTAAC+AGG 0.361149 1_4:-66633552 None:intergenic
ACCTTAAGCCTTGTGTTTCA+AGG 0.361855 1_4:+66628884 Msa0179200:CDS
ACGATTTGGTTAGTAAGTTT+GGG 0.362204 1_4:+66632065 Msa0179200:CDS
TTACTAAACACCGTTTCTTC+AGG 0.362225 1_4:+66630180 Msa0179200:CDS
TCCTTGAAACACAAGGCTTA+AGG 0.367680 1_4:-66628885 None:intergenic
CCAGCTACACTGCACTTGAT+TGG 0.385424 1_4:+66630207 Msa0179200:CDS
TTAATTTGATAGCGGCTATT+GGG 0.387680 1_4:+66627850 Msa0179200:intron
ACCAAGTGGGGTGGACTTAA+GGG 0.391465 1_4:+66633712 Msa0179200:CDS
GAGGTGGAATTTGGCAATGA+TGG 0.400433 1_4:+66632118 Msa0179200:CDS
GAAGAAGGGAGATGGAAATA+GGG 0.400944 1_4:-66627614 None:intergenic
ATCAACGGATGCTCGGGAAA+TGG 0.401014 1_4:-66629763 None:intergenic
GTTGAGGTTGAGCCATGGCC+TGG 0.404063 1_4:-66633738 None:intergenic
AACTTACTAACCAAATCGTT+TGG 0.404070 1_4:-66632061 None:intergenic
AAGAAAGTTATATTCATTAC+CGG 0.407015 1_4:+66627874 Msa0179200:CDS
TAATGCTGGTAATTCCTATA+TGG 0.408560 1_4:+66633023 Msa0179200:CDS
TGTGAGGCTGTTCTGGAGAT+TGG 0.410328 1_4:+66633000 Msa0179200:CDS
AGCCTTCCCAAAATGGTATA+CGG 0.411499 1_4:+66630751 Msa0179200:CDS
CAGCCTCACAAGCTGATGTC+AGG 0.412097 1_4:-66632987 None:intergenic
AATAGGGTTTATTGGATTTG+AGG 0.414097 1_4:-66627598 None:intergenic
AGCAATGGCGTCGGCGGCGA+TGG 0.415306 1_4:-66627756 None:intergenic
CCAATCAAGTGCAGTGTAGC+TGG 0.425417 1_4:-66630207 None:intergenic
TGTCAGCTGTGAGGAATATA+AGG 0.426210 1_4:+66628559 Msa0179200:CDS
CATTTACCGAGCTGATTATG+AGG 0.426407 1_4:+66628526 Msa0179200:CDS
TTGCAGAACAGAGCTGGTCT+TGG 0.428986 1_4:-66627638 None:intergenic
ATTCCTTTACCTCGTGTAAA+CGG 0.431671 1_4:-66628999 None:intergenic
GCACATCTTGCCAATACAAT+TGG 0.438695 1_4:+66632178 Msa0179200:CDS
TTCGTCATCATTTGAGGAAG+TGG 0.439070 1_4:-66627666 None:intergenic
CTCACCATGTTCATCGGTGC+CGG 0.442498 1_4:-66627893 None:intergenic
AGAGCTGGTCTTGGAGAAGA+AGG 0.442571 1_4:-66627629 None:intergenic
ACCAATTTGAAGCAGCAACC+TGG 0.444665 1_4:+66633607 Msa0179200:CDS
GCTCAAAGTACCAATTGTAT+TGG 0.446015 1_4:-66632188 None:intergenic
GCCCCAATCAACGGATGCTC+GGG 0.451436 1_4:-66629769 None:intergenic
ACTTAAGGGTGGCCAGGCCA+TGG 0.453301 1_4:+66633726 Msa0179200:CDS
TGAGTCTTGTCACTCGGAAC+AGG 0.454916 1_4:-66629795 None:intergenic
AAACAAGCTCAAGAAGTTGT+TGG 0.459841 1_4:+66633850 Msa0179200:CDS
AGGGGCACGCTCATCCATAT+AGG 0.466606 1_4:-66633037 None:intergenic
TGCTGCTTCAAATTGGTCCC+TGG 0.467272 1_4:-66633601 None:intergenic
CCTCAGGCCACTATTGATCC+AGG 0.467562 1_4:-66629733 None:intergenic
AAACTGAAGTGGAAGACAAA+GGG 0.469002 1_4:+66633785 Msa0179200:CDS
AAGAAGACTCTGAAAAGTAA+AGG 0.472328 1_4:+66633820 Msa0179200:CDS
TAGCATAGCTGGCCAATAAA+CGG 0.473012 1_4:-66630713 None:intergenic
CCAGCAGACATTAGCATAGC+TGG 0.474341 1_4:-66630724 None:intergenic
GTCAAAATATCAGAAGTCAT+TGG 0.475950 1_4:+66628933 Msa0179200:CDS
TGCCCCAATCAACGGATGCT+CGG 0.476088 1_4:-66629770 None:intergenic
TGTTATCTGCGGGAAAGAAA+CGG 0.478038 1_4:+66627481 Msa0179200:five_prime_UTR
GGATTTGAGGTGAGAAACAT+TGG 0.479677 1_4:-66627585 None:intergenic
AGAAGACTCTGAAAAGTAAA+GGG 0.482397 1_4:+66633821 Msa0179200:CDS
GCCTTGTGTTTCAAGGAAAG+AGG 0.485059 1_4:+66628891 Msa0179200:CDS
ATGTTAGGATGGTATGAAGA+TGG 0.485616 1_4:+66632012 Msa0179200:intron
AGGTGGAATTTGGCAATGAT+GGG 0.485834 1_4:+66632119 Msa0179200:CDS
AGGAACATAGTACATATGTA+TGG 0.486000 1_4:+66633993 Msa0179200:three_prime_UTR
CTCCCTGACATCAGCTTGTG+AGG 0.486304 1_4:+66632984 Msa0179200:CDS
TTAGTAAATCAGGTTGCTCC+TGG 0.489812 1_4:-66630164 None:intergenic
GAGTAAGCGCTGCCCATATG+AGG 0.492891 1_4:-66627731 None:intergenic
CAAGGACAATGTAGCGAGGC+TGG 0.493628 1_4:+66632434 Msa0179200:CDS
ATTGGAACGAAGTGAAAGAA+TGG 0.493740 1_4:-66627567 None:intergenic
GGGTGGACTTAAGGGTGGCC+AGG 0.494372 1_4:+66633720 Msa0179200:CDS
ATCCTAGCAAAGATTGGTTG+AGG 0.496658 1_4:-66633754 None:intergenic
TGCAGAAGGAAATGCATTCA+AGG 0.496773 1_4:+66632416 Msa0179200:CDS
TGTTAGGATGGTATGAAGAT+GGG 0.497162 1_4:+66632013 Msa0179200:intron
AATCCACTGCCAGTGTTGAT+TGG 0.502097 1_4:-66632383 None:intergenic
AAAAGACCATCTGAATCAGC+TGG 0.504522 1_4:+66627417 None:intergenic
GTAGGGTTCGTCATCATTTG+AGG 0.505930 1_4:-66627672 None:intergenic
CTGCCAATCAACACTGGCAG+TGG 0.507171 1_4:+66632380 Msa0179200:CDS
GCAACTGCTGCCGTGGCTCA+AGG 0.510640 1_4:+66627922 Msa0179200:CDS
ACCCTTAAGTCCACCCCACT+TGG 0.511818 1_4:-66633713 None:intergenic
AGACTCAGACTATATATGTA+TGG 0.517740 1_4:+66629811 Msa0179200:CDS
CTATTTGATGCAGGATGAGA+AGG 0.520213 1_4:+66628831 Msa0179200:intron
AGCTGGCCAACCTGAAGAAA+CGG 0.524943 1_4:-66630190 None:intergenic
TATGGTTTGATGCTTTACTA+GGG 0.525816 1_4:+66629829 Msa0179200:CDS
TAAACACCGTTTCTTCAGGT+TGG 0.526746 1_4:+66630184 Msa0179200:CDS
AATCTTCTTAATAGGACTCT+AGG 0.528211 1_4:+66632342 Msa0179200:CDS
GTTCAAACCTGGATCAATAG+TGG 0.530179 1_4:+66629726 Msa0179200:CDS
CCTTGGTCTCTCTTTAAGCA+AGG 0.530338 1_4:+66633057 Msa0179200:CDS
CAGCTATGCTAATGTCTGCT+GGG 0.530697 1_4:+66630725 Msa0179200:CDS
GTTCTGGAGATTGGTAATGC+TGG 0.538081 1_4:+66633009 Msa0179200:CDS
AATGGCGTCGGCGGCGATGG+TGG 0.539434 1_4:-66627753 None:intergenic
GAGCATTTGCAGAACAGAGC+TGG 0.542714 1_4:-66627644 None:intergenic
CCCAAAATGGTATACGGCCA+TGG 0.542751 1_4:+66630757 Msa0179200:CDS
GATTCCACGGTGGCTGCAGA+AGG 0.543559 1_4:+66632402 Msa0179200:CDS
TGCTTCTGAAGCAGCTGCCA+AGG 0.545752 1_4:+66633086 Msa0179200:CDS
TCCCGAGCATCCGTTGATTG+GGG 0.545821 1_4:+66629768 Msa0179200:CDS
GTCTTGGAGAAGAAGGGAGA+TGG 0.547721 1_4:-66627622 None:intergenic
ATGAAGATGGGCAAGTCACT+AGG 0.550900 1_4:+66632025 Msa0179200:CDS
ATATGGATGAGCGTGCCCCT+TGG 0.551543 1_4:+66633040 Msa0179200:CDS
AGCTCGGTAAATGTCACCAT+TGG 0.558279 1_4:-66628516 None:intergenic
CTGTCTCTAATATAATTACA+AGG 0.560785 1_4:-66633503 None:intergenic
TATTCGAGAGTGCTTGCCAA+TGG 0.562606 1_4:+66628500 Msa0179200:CDS
AACAGGTATGCCCCAATCAA+CGG 0.565056 1_4:-66629778 None:intergenic
ACCTCGTGTAAACGGAAAGA+TGG 0.565307 1_4:-66628991 None:intergenic
AACCTCAACCAATCTTTGCT+AGG 0.565548 1_4:+66633752 Msa0179200:CDS
ATCAGCACTAGCTGATGACC+AGG 0.568431 1_4:+66630146 Msa0179200:CDS
ATACTTCTTCCTCAGAGAGG+TGG 0.569549 1_4:+66632102 Msa0179200:CDS
AAAGCGAGCAATGGCGTCGG+CGG 0.570755 1_4:-66627762 None:intergenic
CCAATTTGAAGCAGCAACCT+GGG 0.571584 1_4:+66633608 Msa0179200:CDS
GATTGAAAATCAAACTGAAG+TGG 0.574353 1_4:+66633774 Msa0179200:CDS
TCCTCTTTCCTTGAAACACA+AGG 0.575285 1_4:-66628892 None:intergenic
GGGGCGTTAACGTAGTAAAG+AGG 0.576539 1_4:-66627707 None:intergenic
TAAATTTCTAGGTTCAAACC+TGG 0.577775 1_4:+66629715 Msa0179200:intron
TGCTTCCTAATGTTATCTGC+GGG 0.578122 1_4:+66627471 Msa0179200:five_prime_UTR
TTGAAACACAAGGCTTAAGG+TGG 0.578255 1_4:-66628882 None:intergenic
TACACTGCACTTGATTGGTA+AGG 0.579282 1_4:+66630212 Msa0179200:CDS
TATATTCTCGAACTCAAGCT+CGG 0.581656 1_4:-66633561 None:intergenic
AAGAGGGGTTGTGATGACGT+AGG 0.584740 1_4:-66627690 None:intergenic
AGCGCTGCCCATATGAGGAG+GGG 0.586186 1_4:-66627726 None:intergenic
AATCAGCTGGATGCATCTAA+GGG 0.586435 1_4:+66627430 Msa0179200:five_prime_UTR
TAACATTAGGAAGCACACAC+AGG 0.586959 1_4:-66627463 None:intergenic
GTTAACGCCCCTCCTCATAT+GGG 0.587213 1_4:+66627719 Msa0179200:CDS
AAAATATCAGAAGTCATTGG+AGG 0.587646 1_4:+66628936 Msa0179200:CDS
GGGCGTTAACGTAGTAAAGA+GGG 0.589775 1_4:-66627706 None:intergenic
GGGAAATGGAAAAGTCCCTC+AGG 0.591961 1_4:-66629749 None:intergenic
GAAAATTGCAACTGCTGCCG+TGG 0.592158 1_4:+66627915 Msa0179200:CDS
ATACCTTCGTCAAGAATCCA+TGG 0.594060 1_4:-66630774 None:intergenic
AGCCTCACAAGCTGATGTCA+GGG 0.594895 1_4:-66632986 None:intergenic
AACATTAGGAAGCACACACA+GGG 0.595670 1_4:-66627462 None:intergenic
TCGAGAATATATGCACAGCT+TGG 0.599510 1_4:+66633573 Msa0179200:CDS
TAGCTGGCCAATAAACGGCA+TGG 0.600474 1_4:-66630708 None:intergenic
ACACAAGGCTTAAGGTGGAT+CGG 0.602973 1_4:-66628877 None:intergenic
CAAACTGAAGTGGAAGACAA+AGG 0.603151 1_4:+66633784 Msa0179200:CDS
ATTTACCGAGCTGATTATGA+GGG 0.603837 1_4:+66628527 Msa0179200:CDS
CCTTGCTTAAAGAGAGACCA+AGG 0.604022 1_4:-66633057 None:intergenic
AAAGAACTGCCAATCAACAC+TGG 0.604833 1_4:+66632374 Msa0179200:CDS
CAAGCATGAAGCAATTGTGA+AGG 0.606448 1_4:+66628472 Msa0179200:CDS
CTGGATCAATAGTGGCCTGA+GGG 0.608588 1_4:+66629734 Msa0179200:CDS
AGGGGTGGAACCTTGAGCCA+CGG 0.609720 1_4:-66627932 None:intergenic
AGAGGGGTTGTGATGACGTA+GGG 0.611101 1_4:-66627689 None:intergenic
AAGCGCTGCCCATATGAGGA+GGG 0.613611 1_4:-66627727 None:intergenic
AACACTGGCAGTGGATTCCA+CGG 0.615601 1_4:+66632389 Msa0179200:CDS
AAATTCCCTCATAATCAGCT+CGG 0.616005 1_4:-66628532 None:intergenic
TGCGGGAAAGAAACGGCTTG+AGG 0.621335 1_4:+66627488 Msa0179200:five_prime_UTR
TAAGCGCTGCCCATATGAGG+AGG 0.622703 1_4:-66627728 None:intergenic
ATTACCGGCACCGATGAACA+TGG 0.624333 1_4:+66627889 Msa0179200:CDS
GAGCTGGTCTTGGAGAAGAA+GGG 0.624359 1_4:-66627628 None:intergenic
TGCACAGCTTGGCTATTCCA+GGG 0.630460 1_4:+66633584 Msa0179200:CDS
GTGCTTCCTAATGTTATCTG+CGG 0.630510 1_4:+66627470 Msa0179200:five_prime_UTR
GAAGACAAAGGGGTTGCAGT+CGG 0.633467 1_4:+66633796 Msa0179200:CDS
CTGAAAGCGAGCAATGGCGT+CGG 0.634768 1_4:-66627765 None:intergenic
GCCATCTTTCCGTTTACACG+AGG 0.638336 1_4:+66628990 Msa0179200:CDS
AGGTACCTGAAAGCGAGCAA+TGG 0.639138 1_4:-66627771 None:intergenic
TAGAGAGATACCAAGTGGGG+TGG 0.641306 1_4:+66633703 Msa0179200:intron
AACTGAAGTGGAAGACAAAG+GGG 0.642983 1_4:+66633786 Msa0179200:CDS
ATAGTCTGAGTCTTGTCACT+CGG 0.651357 1_4:-66629801 None:intergenic
CAATGATGGGGACTATTCAG+AGG 0.651752 1_4:+66632132 Msa0179200:CDS
GATTGGTTGAGGTTGAGCCA+TGG 0.658278 1_4:-66633743 None:intergenic
TGCCAAATTCCACCTCTCTG+AGG 0.662782 1_4:-66632111 None:intergenic
GGGAAAGAAACGGCTTGAGG+AGG 0.662942 1_4:+66627491 Msa0179200:five_prime_UTR
ATTGTAGAGAGATACCAAGT+GGG 0.663995 1_4:+66633699 Msa0179200:intron
TGGTCTCTCTTTAAGCAAGG+AGG 0.665745 1_4:+66633060 Msa0179200:CDS
CATTGTAGAGAGATACCAAG+TGG 0.666340 1_4:+66633698 Msa0179200:intron
CTTGCTTAAAGAGAGACCAA+GGG 0.666502 1_4:-66633056 None:intergenic
TAGATACTTCTTCCTCAGAG+AGG 0.671329 1_4:+66632099 Msa0179200:CDS
GGTGGAATTTGGCAATGATG+GGG 0.671855 1_4:+66632120 Msa0179200:CDS
CCTGGATCAATAGTGGCCTG+AGG 0.674293 1_4:+66629733 Msa0179200:CDS
AATTTATTGTGTCAGCTGTG+AGG 0.678267 1_4:+66628550 Msa0179200:CDS
GGCGTTAACGTAGTAAAGAG+GGG 0.684483 1_4:-66627705 None:intergenic
AGTAACAGGAGATAGTGCAA+TGG 0.702926 1_4:-66633538 None:intergenic
TTGTAGAGAGATACCAAGTG+GGG 0.703831 1_4:+66633700 Msa0179200:intron
CGGCCATGGATTCTTGACGA+AGG 0.712399 1_4:+66630771 Msa0179200:CDS
TTGCTTAAAGAGAGACCAAG+GGG 0.714060 1_4:-66633055 None:intergenic
CATTCAAGGACAATGTAGCG+AGG 0.714076 1_4:+66632430 Msa0179200:CDS
AAGTGGGGTGGACTTAAGGG+TGG 0.714266 1_4:+66633715 Msa0179200:CDS
ATTTCCTTCTGCAGCCACCG+TGG 0.736364 1_4:-66632406 None:intergenic
ACATTAGGAAGCACACACAG+GGG 0.765019 1_4:-66627461 None:intergenic
ACTGGCAGTGGATTCCACGG+TGG 0.777092 1_4:+66632392 Msa0179200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTTTTTTTAGATAAT+AGG - chr1_4:66627794-66627813 None:intergenic 10.0%
!!! GTTTTCTTTAATAATTTATT+TGG + chr1_4:66629669-66629688 Msa0179200:intron 10.0%
!!! AAAAAATATATAAAGCATTA+AGG - chr1_4:66631609-66631628 None:intergenic 10.0%
!! TTACACAAATATTTATATAT+AGG + chr1_4:66633973-66633992 Msa0179200:three_prime_UTR 10.0%
!! AAAAAGTTATTATCTAACTT+TGG + chr1_4:66627808-66627827 Msa0179200:intron 15.0%
!!! GATTATATTTAATTTGATAG+CGG + chr1_4:66627842-66627861 Msa0179200:intron 15.0%
!!! AAAAGAGTTAATGAAAATTT+TGG - chr1_4:66628362-66628381 None:intergenic 15.0%
!! TAAGAAACTTAAAAGAAAAA+AGG - chr1_4:66628776-66628795 None:intergenic 15.0%
!!! TTTTCATTAAAATGATTTTG+TGG + chr1_4:66629304-66629323 Msa0179200:intron 15.0%
!! TGAAATCTAATTTAATCATT+TGG + chr1_4:66629440-66629459 Msa0179200:intron 15.0%
!! TTTCTTCTATATAAATTTCT+AGG + chr1_4:66629704-66629723 Msa0179200:intron 15.0%
!! AAAAAAATATGAAAGAAAAG+AGG - chr1_4:66630245-66630264 None:intergenic 15.0%
!!! TAATTCCTTTTTATTTTCTA+TGG + chr1_4:66630390-66630409 Msa0179200:intron 15.0%
!! CAATGATTAATAACTATAAA+GGG - chr1_4:66630585-66630604 None:intergenic 15.0%
!! AGAAACATAAGATAATAAAT+AGG - chr1_4:66630811-66630830 None:intergenic 15.0%
!!! TTTTTAAAGATACTACTATT+AGG - chr1_4:66631312-66631331 None:intergenic 15.0%
!!! CTTTTTATTTTGAAAATGTT+AGG + chr1_4:66631997-66632016 Msa0179200:intron 15.0%
!!! ATAACTATTTCATTTTTGTT+AGG - chr1_4:66632728-66632747 None:intergenic 15.0%
!! TATAATGCTACAAATATTAT+TGG - chr1_4:66633225-66633244 None:intergenic 15.0%
!! AACAAAAATAATTCAGAATA+GGG - chr1_4:66633891-66633910 None:intergenic 15.0%
!! AAACAAAAATAATTCAGAAT+AGG - chr1_4:66633892-66633911 None:intergenic 15.0%
!! AAGAAAGTTATATTCATTAC+CGG + chr1_4:66627874-66627893 Msa0179200:CDS 20.0%
!!! TAGCAATTTTGTAAATTTGA+GGG - chr1_4:66628078-66628097 None:intergenic 20.0%
!!! ATAGCAATTTTGTAAATTTG+AGG - chr1_4:66628079-66628098 None:intergenic 20.0%
!!! TGATACATTTTTAGTAAAGA+TGG + chr1_4:66628244-66628263 Msa0179200:intron 20.0%
!!! AAACAATCTGAATTTTGATT+TGG + chr1_4:66629515-66629534 Msa0179200:intron 20.0%
!! AACATTATCATTATCATCAT+CGG + chr1_4:66629930-66629949 Msa0179200:intron 20.0%
!! TATTTCTCACTTAAAAGAAA+AGG - chr1_4:66630327-66630346 None:intergenic 20.0%
!! CCAATGATTAATAACTATAA+AGG - chr1_4:66630586-66630605 None:intergenic 20.0%
!! CCTTTATAGTTATTAATCAT+TGG + chr1_4:66630583-66630602 Msa0179200:intron 20.0%
!! CAAGTTCATTATTTCATTAA+TGG + chr1_4:66630655-66630674 Msa0179200:intron 20.0%
!!! ACCATATTTTTAGTTCAATA+CGG - chr1_4:66630947-66630966 None:intergenic 20.0%
!! TTCATTCCATTTATTGAATT+TGG + chr1_4:66631227-66631246 Msa0179200:intron 20.0%
!! ATAGATCCAAATTCAATAAA+TGG - chr1_4:66631236-66631255 None:intergenic 20.0%
!! ATAATCTTAACAAGTTTACA+AGG - chr1_4:66631807-66631826 None:intergenic 20.0%
!!! TGTAAACTTGTTAAGATTAT+CGG + chr1_4:66631807-66631826 Msa0179200:intron 20.0%
!!! AGTAAAAGTAATTTGATAGT+TGG + chr1_4:66631883-66631902 Msa0179200:intron 20.0%
!! TGAAAACTATAAACTAAACT+TGG + chr1_4:66631908-66631927 Msa0179200:intron 20.0%
!!! TTATTTTGAAAATGTTAGGA+TGG + chr1_4:66632001-66632020 Msa0179200:intron 20.0%
!! AGATGAAAAGAAGAAAAATA+TGG + chr1_4:66632602-66632621 Msa0179200:intron 20.0%
!!! TGATCAATATTTACTTTTGT+AGG + chr1_4:66632930-66632949 Msa0179200:intron 20.0%
!! GTTTATGTAATATATGTTCT+AGG - chr1_4:66633118-66633137 None:intergenic 20.0%
!! ATTATAAAAGATAGATTCTG+TGG + chr1_4:66633239-66633258 Msa0179200:intron 20.0%
!! AATTTGATCAAATATCAATC+AGG - chr1_4:66633286-66633305 None:intergenic 20.0%
!! ATTAATGTGAGAAAAGAAAA+AGG - chr1_4:66633327-66633346 None:intergenic 20.0%
!! ATAAGTGAAAATTCTTTCTT+AGG - chr1_4:66633468-66633487 None:intergenic 20.0%
! CTATAACGATGATTTACTAA+GGG - chr1_4:66628024-66628043 None:intergenic 25.0%
! ACTATAACGATGATTTACTA+AGG - chr1_4:66628025-66628044 None:intergenic 25.0%
!! ATTGACGTTCTTTGATTTAT+GGG + chr1_4:66628277-66628296 Msa0179200:intron 25.0%
!! TTTTGGTCCTCAAAATTTTA+GGG - chr1_4:66628345-66628364 None:intergenic 25.0%
!!! ATTTTGGTCCTCAAAATTTT+AGG - chr1_4:66628346-66628365 None:intergenic 25.0%
! ATACAAGATCTTTACTTAGA+AGG + chr1_4:66628639-66628658 Msa0179200:intron 25.0%
! TACAAGATCTTTACTTAGAA+GGG + chr1_4:66628640-66628659 Msa0179200:intron 25.0%
! TCTATTTACCATCCTTTATT+TGG + chr1_4:66628695-66628714 Msa0179200:intron 25.0%
! GTTATCTATCTTCCAAATAA+AGG - chr1_4:66628710-66628729 None:intergenic 25.0%
! ATGATTCAAATTGATAGAGT+AGG + chr1_4:66629175-66629194 Msa0179200:intron 25.0%
!!! TTTATATGCTTTTCAAGTCT+TGG + chr1_4:66629221-66629240 Msa0179200:intron 25.0%
!! TTTTTACAATCTTCTATACC+GGG - chr1_4:66629338-66629357 None:intergenic 25.0%
!! GTTTTTACAATCTTCTATAC+CGG - chr1_4:66629339-66629358 None:intergenic 25.0%
!! TAATCAATTTTGGATGCTAT+TGG - chr1_4:66629361-66629380 None:intergenic 25.0%
!! AAGTGAGAGTTAATCAATTT+TGG - chr1_4:66629371-66629390 None:intergenic 25.0%
! ATACATTAAGTGATCGAATT+CGG - chr1_4:66629480-66629499 None:intergenic 25.0%
!!! AGCATTATTCCACTATTTTT+GGG - chr1_4:66629576-66629595 None:intergenic 25.0%
!! AAGCATTATTCCACTATTTT+TGG - chr1_4:66629577-66629596 None:intergenic 25.0%
! ATTATGCACGATTATTTGTA+TGG + chr1_4:66629993-66630012 Msa0179200:intron 25.0%
! CCAAACCATAGAAAATAAAA+AGG - chr1_4:66630398-66630417 None:intergenic 25.0%
!!! CCTTTTTATTTTCTATGGTT+TGG + chr1_4:66630395-66630414 Msa0179200:intron 25.0%
! TTATGACAAGTGGATAAAAA+TGG - chr1_4:66630424-66630443 None:intergenic 25.0%
! AATAATGAACTTGAATGCTT+TGG - chr1_4:66630648-66630667 None:intergenic 25.0%
! TTATCTTATGTTTCTTCTTG+AGG + chr1_4:66630816-66630835 Msa0179200:intron 25.0%
! CATTTCTTGTAAATAAGAGA+CGG - chr1_4:66630875-66630894 None:intergenic 25.0%
! ACCGTATTGAACTAAAAATA+TGG + chr1_4:66630943-66630962 Msa0179200:intron 25.0%
!!! TATTGAGCTCTTATTTTCTA+AGG - chr1_4:66631655-66631674 None:intergenic 25.0%
! TGACATTACTTCTTAAATTC+TGG + chr1_4:66631743-66631762 Msa0179200:intron 25.0%
!! CTTAAATTCTGGTTAAAATG+TGG + chr1_4:66631754-66631773 Msa0179200:intron 25.0%
! GAAACAGATTTATAAGACTT+TGG - chr1_4:66631948-66631967 None:intergenic 25.0%
! TAACATGAATACAACTTTCT+GGG - chr1_4:66632685-66632704 None:intergenic 25.0%
! AACTTCATACACTAAAATGT+TGG + chr1_4:66633135-66633154 Msa0179200:intron 25.0%
!!! AGAAAAAGGTGTTTAGTATT+TGG - chr1_4:66633313-66633332 None:intergenic 25.0%
! TGCTTATTATACTTGGTTAA+GGG - chr1_4:66633398-66633417 None:intergenic 25.0%
! ATGCTTATTATACTTGGTTA+AGG - chr1_4:66633399-66633418 None:intergenic 25.0%
! TGGAATATGCTTATTATACT+TGG - chr1_4:66633405-66633424 None:intergenic 25.0%
!! AGAATTTTCACTTATGATGT+TGG + chr1_4:66633473-66633492 Msa0179200:intron 25.0%
! CTGTCTCTAATATAATTACA+AGG - chr1_4:66633506-66633525 None:intergenic 25.0%
!!! TAGTTTTACATTACAGAAGT+TGG - chr1_4:66633918-66633937 None:intergenic 25.0%
AATAGGGTTTATTGGATTTG+AGG - chr1_4:66627601-66627620 None:intergenic 30.0%
!! TTTAATTTGATAGCGGCTAT+TGG + chr1_4:66627849-66627868 Msa0179200:intron 30.0%
!! TTAATTTGATAGCGGCTATT+GGG + chr1_4:66627850-66627869 Msa0179200:intron 30.0%
! AATTTTCTCACCATGTTCAT+CGG - chr1_4:66627902-66627921 None:intergenic 30.0%
TGATTTACTAAGGGATGAAA+TGG - chr1_4:66628015-66628034 None:intergenic 30.0%
ATTTACCATCACAAGTTTAG+AGG + chr1_4:66628145-66628164 Msa0179200:intron 30.0%
GTATCAAAAGTTCAAAACCA+CGG - chr1_4:66628230-66628249 None:intergenic 30.0%
! GATTGACGTTCTTTGATTTA+TGG + chr1_4:66628276-66628295 Msa0179200:intron 30.0%
! AGAACTATTTGAAGTTCTAG+AGG - chr1_4:66628678-66628697 None:intergenic 30.0%
TCTATCTTCCAAATAAAGGA+TGG - chr1_4:66628706-66628725 None:intergenic 30.0%
!! AATGTATTGCTATTTGATGC+AGG + chr1_4:66628822-66628841 Msa0179200:intron 30.0%
GTCAAAATATCAGAAGTCAT+TGG + chr1_4:66628933-66628952 Msa0179200:CDS 30.0%
AAAATATCAGAAGTCATTGG+AGG + chr1_4:66628936-66628955 Msa0179200:CDS 30.0%
GTAAGAAATGTAACAGATAG+AGG - chr1_4:66629066-66629085 None:intergenic 30.0%
!!! GCATTATTCCACTATTTTTG+GGG - chr1_4:66629575-66629594 None:intergenic 30.0%
! TAAATTTCTAGGTTCAAACC+TGG + chr1_4:66629715-66629734 Msa0179200:intron 30.0%
AGACTCAGACTATATATGTA+TGG + chr1_4:66629811-66629830 Msa0179200:CDS 30.0%
TATGGTTTGATGCTTTACTA+GGG + chr1_4:66629829-66629848 Msa0179200:CDS 30.0%
TGTTCAACAAGAGTTTAGTA+AGG - chr1_4:66630090-66630109 None:intergenic 30.0%
!! GTTGTACTCATAACTTGTTA+AGG + chr1_4:66630354-66630373 Msa0179200:intron 30.0%
!! TCATAACTTGTTAAGGTAGA+AGG + chr1_4:66630361-66630380 Msa0179200:intron 30.0%
TAAGAGAGAATTATGACAAG+TGG - chr1_4:66630434-66630453 None:intergenic 30.0%
! ATAGCCTTTTCCTAGTATTT+GGG - chr1_4:66630465-66630484 None:intergenic 30.0%
! CACAAAAATACAGATGGATT+TGG - chr1_4:66630548-66630567 None:intergenic 30.0%
!! ATCCATCTGTATTTTTGTGA+TGG + chr1_4:66630549-66630568 Msa0179200:intron 30.0%
AACCATCACAAAAATACAGA+TGG - chr1_4:66630554-66630573 None:intergenic 30.0%
!!! TAATGGTTTTGTTACTCTGT+AGG + chr1_4:66630672-66630691 Msa0179200:intron 30.0%
ATTTACAAGAAATGCTGAGT+AGG + chr1_4:66630881-66630900 Msa0179200:intron 30.0%
GAAATGTACTTTACAGACAT+AGG - chr1_4:66631210-66631229 None:intergenic 30.0%
! GGAATACATTTGAAGCATTA+CGG - chr1_4:66631634-66631653 None:intergenic 30.0%
!! ATAAAACTTGCTAACACTGT+TGG - chr1_4:66631686-66631705 None:intergenic 30.0%
TAATGTCATGATGTAGAAGA+TGG - chr1_4:66631731-66631750 None:intergenic 30.0%
! ATTCTGGTTAAAATGTGGTT+AGG + chr1_4:66631759-66631778 Msa0179200:intron 30.0%
! TTCTGGTTAAAATGTGGTTA+GGG + chr1_4:66631760-66631779 Msa0179200:intron 30.0%
AACTTACTAACCAAATCGTT+TGG - chr1_4:66632064-66632083 None:intergenic 30.0%
!! AACGATTTGGTTAGTAAGTT+TGG + chr1_4:66632064-66632083 Msa0179200:CDS 30.0%
!! ACGATTTGGTTAGTAAGTTT+GGG + chr1_4:66632065-66632084 Msa0179200:CDS 30.0%
TGTTACAAGCAATGAAAGTA+AGG - chr1_4:66632249-66632268 None:intergenic 30.0%
! CAAAACCTCTTTCACTATTT+TGG + chr1_4:66632314-66632333 Msa0179200:intron 30.0%
AATCTTCTTAATAGGACTCT+AGG + chr1_4:66632342-66632361 Msa0179200:CDS 30.0%
TCTGTTTAGATTGTCTTATC+CGG - chr1_4:66632585-66632604 None:intergenic 30.0%
! CAACTTAGATAGATCGTTTT+AGG + chr1_4:66632629-66632648 Msa0179200:intron 30.0%
GTAACATGAATACAACTTTC+TGG - chr1_4:66632686-66632705 None:intergenic 30.0%
ATTACAGAAACACAATCCAA+GGG - chr1_4:66632834-66632853 None:intergenic 30.0%
AATTACAGAAACACAATCCA+AGG - chr1_4:66632835-66632854 None:intergenic 30.0%
TATCTACAATGGTTGAAAGA+TGG - chr1_4:66632880-66632899 None:intergenic 30.0%
AACCATTGTAGATAAGTTGT+GGG + chr1_4:66632886-66632905 Msa0179200:intron 30.0%
TAATGCTGGTAATTCCTATA+TGG + chr1_4:66633023-66633042 Msa0179200:CDS 30.0%
TCAATCAGGTAAAGATTTAG+TGG - chr1_4:66633272-66633291 None:intergenic 30.0%
AAACGAAAAGAAGTGACATA+TGG - chr1_4:66633425-66633444 None:intergenic 30.0%
!! ATATGTCACTTCTTTTCGTT+TGG + chr1_4:66633424-66633443 Msa0179200:intron 30.0%
!! TATGTCACTTCTTTTCGTTT+GGG + chr1_4:66633425-66633444 Msa0179200:intron 30.0%
! TTTTCAATCCTAGCAAAGAT+TGG - chr1_4:66633763-66633782 None:intergenic 30.0%
GATTGAAAATCAAACTGAAG+TGG + chr1_4:66633774-66633793 Msa0179200:CDS 30.0%
! AAGAAGACTCTGAAAAGTAA+AGG + chr1_4:66633820-66633839 Msa0179200:CDS 30.0%
! AGAAGACTCTGAAAAGTAAA+GGG + chr1_4:66633821-66633840 Msa0179200:CDS 30.0%
AGGAACATAGTACATATGTA+TGG + chr1_4:66633993-66634012 Msa0179200:three_prime_UTR 30.0%
!! CTTTTTGAGAATAAAGTTCG+TGG + chr1_4:66634044-66634063 Msa0179200:three_prime_UTR 30.0%
ATTGGAACGAAGTGAAAGAA+TGG - chr1_4:66627570-66627589 None:intergenic 35.0%
GAGATGGAAATAGGGTTTAT+TGG - chr1_4:66627609-66627628 None:intergenic 35.0%
CTTGTGAAATGAGATTGCAA+TGG - chr1_4:66627963-66627982 None:intergenic 35.0%
TTTGAGGGACTAAATTGATG+AGG - chr1_4:66628063-66628082 None:intergenic 35.0%
TAGAACCTCTAAACTTGTGA+TGG - chr1_4:66628153-66628172 None:intergenic 35.0%
GGCTACTCAAGTAAAACATT+AGG + chr1_4:66628199-66628218 Msa0179200:intron 35.0%
TAAAACATTAGGTCTTTCCG+TGG + chr1_4:66628210-66628229 Msa0179200:intron 35.0%
!! TTTGCTGTTTCGTAAAATCG+AGG + chr1_4:66628305-66628324 Msa0179200:intron 35.0%
!!! AATTTTAGGGTGGAGCAATT+TGG - chr1_4:66628332-66628351 None:intergenic 35.0%
ATTTACCGAGCTGATTATGA+GGG + chr1_4:66628527-66628546 Msa0179200:CDS 35.0%
AAATTCCCTCATAATCAGCT+CGG - chr1_4:66628535-66628554 None:intergenic 35.0%
AATTTATTGTGTCAGCTGTG+AGG + chr1_4:66628550-66628569 Msa0179200:CDS 35.0%
!!! AAGGTGATAGTTTTAACTCG+AGG + chr1_4:66628578-66628597 Msa0179200:intron 35.0%
ATTCCTTTACCTCGTGTAAA+CGG - chr1_4:66629002-66629021 None:intergenic 35.0%
TTACACGAGGTAAAGGAATA+TGG + chr1_4:66629003-66629022 Msa0179200:intron 35.0%
CTTACATACTGCAATTCAAG+CGG + chr1_4:66629081-66629100 Msa0179200:intron 35.0%
TTACATACTGCAATTCAAGC+GGG + chr1_4:66629082-66629101 Msa0179200:intron 35.0%
TATGTAGTTACACGACCTTA+AGG - chr1_4:66629283-66629302 None:intergenic 35.0%
TTAAGTGATCGAATTCGGAT+TGG - chr1_4:66629475-66629494 None:intergenic 35.0%
TCGTGAAATACCTATATCAC+AGG - chr1_4:66629613-66629632 None:intergenic 35.0%
AACTGCATATCATCTCTTTC+AGG + chr1_4:66629632-66629651 Msa0179200:intron 35.0%
TCTTTCAGGAGAACTTCAAA+TGG + chr1_4:66629646-66629665 Msa0179200:intron 35.0%
CTTTCAGGAGAACTTCAAAT+GGG + chr1_4:66629647-66629666 Msa0179200:intron 35.0%
GTATGGTTTGATGCTTTACT+AGG + chr1_4:66629828-66629847 Msa0179200:CDS 35.0%
AAGCTAATAGAATAGAGCCA+GGG - chr1_4:66629897-66629916 None:intergenic 35.0%
AAAGCTAATAGAATAGAGCC+AGG - chr1_4:66629898-66629917 None:intergenic 35.0%
AGCTGCACATACAAAAAGAA+AGG - chr1_4:66630122-66630141 None:intergenic 35.0%
GAAACGGTGTTTAGTAAATC+AGG - chr1_4:66630177-66630196 None:intergenic 35.0%
TTACTAAACACCGTTTCTTC+AGG + chr1_4:66630180-66630199 Msa0179200:CDS 35.0%
TATAGTCAACCCCAAATACT+AGG + chr1_4:66630452-66630471 Msa0179200:intron 35.0%
! TAGCCTTTTCCTAGTATTTG+GGG - chr1_4:66630464-66630483 None:intergenic 35.0%
! GATAGCCTTTTCCTAGTATT+TGG - chr1_4:66630466-66630485 None:intergenic 35.0%
AGTCAAAATCTCGTTCTACT+CGG + chr1_4:66630496-66630515 Msa0179200:intron 35.0%
!! TTGACGAAGGTATTAGTACT+CGG + chr1_4:66630784-66630803 Msa0179200:intron 35.0%
!!! AGTTCACAATGGTTTTGGTT+TGG - chr1_4:66631029-66631048 None:intergenic 35.0%
! TGTACAGTTCACAATGGTTT+TGG - chr1_4:66631034-66631053 None:intergenic 35.0%
TGCATGATTGAAAACTGAAG+TGG - chr1_4:66631078-66631097 None:intergenic 35.0%
! ACTTCAGTTTTCAATCATGC+AGG + chr1_4:66631077-66631096 Msa0179200:intron 35.0%
AATAAAACGAGAATGCTGCT+CGG + chr1_4:66631167-66631186 Msa0179200:intron 35.0%
TTTACAGACATAGGAGAGAT+TGG - chr1_4:66631201-66631220 None:intergenic 35.0%
GGTAACGATTGTGTCAAAAT+AGG + chr1_4:66631391-66631410 Msa0179200:intron 35.0%
ATGTTAGGATGGTATGAAGA+TGG + chr1_4:66632012-66632031 Msa0179200:intron 35.0%
TGTTAGGATGGTATGAAGAT+GGG + chr1_4:66632013-66632032 Msa0179200:intron 35.0%
! GCTCAAAGTACCAATTGTAT+TGG - chr1_4:66632191-66632210 None:intergenic 35.0%
TGTTACAAGCAATGAAAGCA+AGG - chr1_4:66632213-66632232 None:intergenic 35.0%
TGGCAGGAAATCTTCTTAAT+AGG + chr1_4:66632334-66632353 Msa0179200:intron 35.0%
CAACCATTGTAGATAAGTTG+TGG + chr1_4:66632885-66632904 Msa0179200:intron 35.0%
TTGATCAACCTTTGTGTTAC+AGG - chr1_4:66632917-66632936 None:intergenic 35.0%
!! TATGTTCTAGGAGAATACCT+TGG - chr1_4:66633106-66633125 None:intergenic 35.0%
TATATTCTCGAACTCAAGCT+CGG - chr1_4:66633564-66633583 None:intergenic 35.0%
ATTGTAGAGAGATACCAAGT+GGG + chr1_4:66633699-66633718 Msa0179200:intron 35.0%
AAACTGAAGTGGAAGACAAA+GGG + chr1_4:66633785-66633804 Msa0179200:CDS 35.0%
AAACAAGCTCAAGAAGTTGT+TGG + chr1_4:66633850-66633869 Msa0179200:CDS 35.0%
AATCAGCTGGATGCATCTAA+GGG + chr1_4:66627430-66627449 Msa0179200:five_prime_UTR 40.0%
! AACATTAGGAAGCACACACA+GGG - chr1_4:66627465-66627484 None:intergenic 40.0%
! TAACATTAGGAAGCACACAC+AGG - chr1_4:66627466-66627485 None:intergenic 40.0%
GTGCTTCCTAATGTTATCTG+CGG + chr1_4:66627470-66627489 Msa0179200:five_prime_UTR 40.0%
TGCTTCCTAATGTTATCTGC+GGG + chr1_4:66627471-66627490 Msa0179200:five_prime_UTR 40.0%
TCTTTCCCGCAGATAACATT+AGG - chr1_4:66627479-66627498 None:intergenic 40.0%
TGTTATCTGCGGGAAAGAAA+CGG + chr1_4:66627481-66627500 Msa0179200:five_prime_UTR 40.0%
AGGAGGCAGCATCAAAAAAA+TGG + chr1_4:66627508-66627527 Msa0179200:exon 40.0%
! GGATTTGAGGTGAGAAACAT+TGG - chr1_4:66627588-66627607 None:intergenic 40.0%
GAAGAAGGGAGATGGAAATA+GGG - chr1_4:66627617-66627636 None:intergenic 40.0%
AGAAGAAGGGAGATGGAAAT+AGG - chr1_4:66627618-66627637 None:intergenic 40.0%
TTCGTCATCATTTGAGGAAG+TGG - chr1_4:66627669-66627688 None:intergenic 40.0%
GACAGACATTGTTGCGTTAA+GGG - chr1_4:66628107-66628126 None:intergenic 40.0%
!! GTTTTGATGCAGCAAGAGAT+CGG + chr1_4:66628178-66628197 Msa0179200:intron 40.0%
! TGCTCCACCCTAAAATTTTG+AGG + chr1_4:66628335-66628354 Msa0179200:intron 40.0%
!! TGGTCCTCAAAATTTTAGGG+TGG - chr1_4:66628342-66628361 None:intergenic 40.0%
CAAGCATGAAGCAATTGTGA+AGG + chr1_4:66628472-66628491 Msa0179200:CDS 40.0%
CATTTACCGAGCTGATTATG+AGG + chr1_4:66628526-66628545 Msa0179200:CDS 40.0%
TGTCAGCTGTGAGGAATATA+AGG + chr1_4:66628559-66628578 Msa0179200:CDS 40.0%
CTATTTGATGCAGGATGAGA+AGG + chr1_4:66628831-66628850 Msa0179200:intron 40.0%
TTGAAACACAAGGCTTAAGG+TGG - chr1_4:66628885-66628904 None:intergenic 40.0%
! ACCTTAAGCCTTGTGTTTCA+AGG + chr1_4:66628884-66628903 Msa0179200:CDS 40.0%
TCCTTGAAACACAAGGCTTA+AGG - chr1_4:66628888-66628907 None:intergenic 40.0%
TCCTCTTTCCTTGAAACACA+AGG - chr1_4:66628895-66628914 None:intergenic 40.0%
AAAGATGGCTGCACAAAGTT+TGG - chr1_4:66628979-66628998 None:intergenic 40.0%
TTTCCGTTTACACGAGGTAA+AGG + chr1_4:66628996-66629015 Msa0179200:intron 40.0%
TGAACAGTCTCTAGTGAATG+TGG - chr1_4:66629141-66629160 None:intergenic 40.0%
! GATTTTGTGGTCATACATCC+CGG + chr1_4:66629317-66629336 Msa0179200:intron 40.0%
! CTTTTTCTGTCTTCCCTTGT+CGG + chr1_4:66629388-66629407 Msa0179200:intron 40.0%
TAAAACAAGCCTACCGACAA+GGG - chr1_4:66629404-66629423 None:intergenic 40.0%
ATAAAACAAGCCTACCGACA+AGG - chr1_4:66629405-66629424 None:intergenic 40.0%
!! ATTTTTGGGGAAGCATGCAT+GGG - chr1_4:66629562-66629581 None:intergenic 40.0%
!!! TATTTTTGGGGAAGCATGCA+TGG - chr1_4:66629563-66629582 None:intergenic 40.0%
AGCAGTTTCACCTGTGATAT+AGG + chr1_4:66629600-66629619 Msa0179200:intron 40.0%
GTTCAAACCTGGATCAATAG+TGG + chr1_4:66629726-66629745 Msa0179200:CDS 40.0%
! ATAGTCTGAGTCTTGTCACT+CGG - chr1_4:66629804-66629823 None:intergenic 40.0%
! TTAGTAAATCAGGTTGCTCC+TGG - chr1_4:66630167-66630186 None:intergenic 40.0%
TAAACACCGTTTCTTCAGGT+TGG + chr1_4:66630184-66630203 Msa0179200:CDS 40.0%
TACACTGCACTTGATTGGTA+AGG + chr1_4:66630212-66630231 Msa0179200:CDS 40.0%
CAACCCCAAATACTAGGAAA+AGG + chr1_4:66630458-66630477 Msa0179200:intron 40.0%
! TACGTTTCCATGCCGTTTAT+TGG + chr1_4:66630701-66630720 Msa0179200:CDS 40.0%
TAGCATAGCTGGCCAATAAA+CGG - chr1_4:66630716-66630735 None:intergenic 40.0%
AGCCTTCCCAAAATGGTATA+CGG + chr1_4:66630751-66630770 Msa0179200:CDS 40.0%
ATACCTTCGTCAAGAATCCA+TGG - chr1_4:66630777-66630796 None:intergenic 40.0%
!! TGACGAAGGTATTAGTACTC+GGG + chr1_4:66630785-66630804 Msa0179200:intron 40.0%
!! GTTTGGTGTACAGTTCACAA+TGG - chr1_4:66631040-66631059 None:intergenic 40.0%
GAAGTGGTAATTGAGCAGTT+CGG - chr1_4:66631062-66631081 None:intergenic 40.0%
AGACATAGGAGAGATTGGAA+TGG - chr1_4:66631196-66631215 None:intergenic 40.0%
! TCCTGAACTTTGAAGGAAAC+TGG + chr1_4:66631369-66631388 Msa0179200:intron 40.0%
! CCTGAACTTTGAAGGAAACT+GGG + chr1_4:66631370-66631389 Msa0179200:intron 40.0%
TCACTGCTTCTTTGTTGCAT+TGG + chr1_4:66631512-66631531 Msa0179200:intron 40.0%
! TGAAAGCATGTCAATCCAAG+TGG - chr1_4:66631538-66631557 None:intergenic 40.0%
ACTTGGATTGACATGCTTTC+AGG + chr1_4:66631537-66631556 Msa0179200:intron 40.0%
TTGACATGCTTTCAGGCTAT+TGG + chr1_4:66631544-66631563 Msa0179200:intron 40.0%
TGGTTAAAATGTGGTTAGGG+TGG + chr1_4:66631763-66631782 Msa0179200:intron 40.0%
TTAAAATGTGGTTAGGGTGG+TGG + chr1_4:66631766-66631785 Msa0179200:intron 40.0%
! TTAGGGTGGTGGTATATGAT+TGG + chr1_4:66631777-66631796 Msa0179200:intron 40.0%
! AGACTTTGGTTAGTCACAGA+AGG - chr1_4:66631934-66631953 None:intergenic 40.0%
TACGCTTGAACCAAACGATT+TGG + chr1_4:66632051-66632070 Msa0179200:CDS 40.0%
TAGATACTTCTTCCTCAGAG+AGG + chr1_4:66632099-66632118 Msa0179200:CDS 40.0%
AGGTGGAATTTGGCAATGAT+GGG + chr1_4:66632119-66632138 Msa0179200:CDS 40.0%
GCACATCTTGCCAATACAAT+TGG + chr1_4:66632178-66632197 Msa0179200:CDS 40.0%
!!! ACCTCTTTCACTATTTTGGC+AGG + chr1_4:66632318-66632337 Msa0179200:intron 40.0%
TCCTGCCAAAATAGTGAAAG+AGG - chr1_4:66632322-66632341 None:intergenic 40.0%
AAAGAACTGCCAATCAACAC+TGG + chr1_4:66632374-66632393 Msa0179200:CDS 40.0%
TGCAGAAGGAAATGCATTCA+AGG + chr1_4:66632416-66632435 Msa0179200:CDS 40.0%
TAACCTCAAACTGCTGCATA+AGG - chr1_4:66632516-66632535 None:intergenic 40.0%
GTTTAGATTGTCTTATCCGG+TGG - chr1_4:66632582-66632601 None:intergenic 40.0%
TGAATACAACTTTCTGGGCA+GGG - chr1_4:66632680-66632699 None:intergenic 40.0%
ATGAATACAACTTTCTGGGC+AGG - chr1_4:66632681-66632700 None:intergenic 40.0%
CTCCCACAACTTATCTACAA+TGG - chr1_4:66632891-66632910 None:intergenic 40.0%
TTGCTTAAAGAGAGACCAAG+GGG - chr1_4:66633058-66633077 None:intergenic 40.0%
CTTGCTTAAAGAGAGACCAA+GGG - chr1_4:66633059-66633078 None:intergenic 40.0%
TTCACTTATGATGTTGGAGC+AGG + chr1_4:66633479-66633498 Msa0179200:intron 40.0%
AGTAACAGGAGATAGTGCAA+TGG - chr1_4:66633541-66633560 None:intergenic 40.0%
TCGAGAATATATGCACAGCT+TGG + chr1_4:66633573-66633592 Msa0179200:CDS 40.0%
TAAGATAGAGAGAGATACCC+AGG - chr1_4:66633628-66633647 None:intergenic 40.0%
CATTGTAGAGAGATACCAAG+TGG + chr1_4:66633698-66633717 Msa0179200:intron 40.0%
TTGTAGAGAGATACCAAGTG+GGG + chr1_4:66633700-66633719 Msa0179200:intron 40.0%
AACCTCAACCAATCTTTGCT+AGG + chr1_4:66633752-66633771 Msa0179200:CDS 40.0%
! ATCCTAGCAAAGATTGGTTG+AGG - chr1_4:66633757-66633776 None:intergenic 40.0%
CAAACTGAAGTGGAAGACAA+AGG + chr1_4:66633784-66633803 Msa0179200:CDS 40.0%
AACTGAAGTGGAAGACAAAG+GGG + chr1_4:66633786-66633805 Msa0179200:CDS 40.0%
GAATCAGCTGGATGCATCTA+AGG + chr1_4:66627429-66627448 Msa0179200:five_prime_UTR 45.0%
! ACATTAGGAAGCACACACAG+GGG - chr1_4:66627464-66627483 None:intergenic 45.0%
GTAGGGTTCGTCATCATTTG+AGG - chr1_4:66627675-66627694 None:intergenic 45.0%
GGCGTTAACGTAGTAAAGAG+GGG - chr1_4:66627708-66627727 None:intergenic 45.0%
GGGCGTTAACGTAGTAAAGA+GGG - chr1_4:66627709-66627728 None:intergenic 45.0%
TGAGATTGCAATGGTCCGTA+GGG - chr1_4:66627954-66627973 None:intergenic 45.0%
ATGAGATTGCAATGGTCCGT+AGG - chr1_4:66627955-66627974 None:intergenic 45.0%
CACAAGCTTACAAGACGCTT+TGG + chr1_4:66627977-66627996 Msa0179200:intron 45.0%
CGACAGACATTGTTGCGTTA+AGG - chr1_4:66628108-66628127 None:intergenic 45.0%
!! TATTCGAGAGTGCTTGCCAA+TGG + chr1_4:66628500-66628519 Msa0179200:CDS 45.0%
AGCTCGGTAAATGTCACCAT+TGG - chr1_4:66628519-66628538 None:intergenic 45.0%
ACTGCCTCTCAATCTGATGA+TGG + chr1_4:66628728-66628747 Msa0179200:intron 45.0%
CTGCCTCTCAATCTGATGAT+GGG + chr1_4:66628729-66628748 Msa0179200:intron 45.0%
TCTCCCATCATCAGATTGAG+AGG - chr1_4:66628735-66628754 None:intergenic 45.0%
ACACAAGGCTTAAGGTGGAT+CGG - chr1_4:66628880-66628899 None:intergenic 45.0%
GCCTTGTGTTTCAAGGAAAG+AGG + chr1_4:66628891-66628910 Msa0179200:CDS 45.0%
ACCTCGTGTAAACGGAAAGA+TGG - chr1_4:66628994-66629013 None:intergenic 45.0%
!! CTTAAGGAGTGCTAACTGGT+TGG - chr1_4:66629267-66629286 None:intergenic 45.0%
CAACCAGTTAGCACTCCTTA+AGG + chr1_4:66629265-66629284 Msa0179200:intron 45.0%
GCATGCTTCCCCAAAAATAG+TGG + chr1_4:66629564-66629583 Msa0179200:intron 45.0%
AACAGGTATGCCCCAATCAA+CGG - chr1_4:66629781-66629800 None:intergenic 45.0%
TGTGCATCTCTAACTTTCCC+TGG + chr1_4:66629877-66629896 Msa0179200:intron 45.0%
TCTACTCGGTAATCTCCATC+TGG + chr1_4:66630510-66630529 Msa0179200:intron 45.0%
TGGTGTGTAAGTACTCCAGA+TGG - chr1_4:66630528-66630547 None:intergenic 45.0%
CAGCTATGCTAATGTCTGCT+GGG + chr1_4:66630725-66630744 Msa0179200:CDS 45.0%
! CCATGGCCGTATACCATTTT+GGG - chr1_4:66630760-66630779 None:intergenic 45.0%
! TCCATGGCCGTATACCATTT+TGG - chr1_4:66630761-66630780 None:intergenic 45.0%
CCTGTTCATGGTTCAGTCAT+GGG + chr1_4:66630904-66630923 Msa0179200:intron 45.0%
AGTTCATCGCACAATTGCAG+CGG - chr1_4:66630989-66631008 None:intergenic 45.0%
GCAATTGTGCGATGAACTGT+CGG + chr1_4:66630991-66631010 Msa0179200:intron 45.0%
GGTAATTGAGCAGTTCGGTT+TGG - chr1_4:66631057-66631076 None:intergenic 45.0%
CAACGACTCCTGAACTTTGA+AGG + chr1_4:66631362-66631381 Msa0179200:intron 45.0%
CCCAGTTTCCTTCAAAGTTC+AGG - chr1_4:66631373-66631392 None:intergenic 45.0%
! TCTTTGTTGCATTGGCCACT+TGG + chr1_4:66631520-66631539 Msa0179200:intron 45.0%
ATGAAGATGGGCAAGTCACT+AGG + chr1_4:66632025-66632044 Msa0179200:CDS 45.0%
ATACTTCTTCCTCAGAGAGG+TGG + chr1_4:66632102-66632121 Msa0179200:CDS 45.0%
TTCCTCAGAGAGGTGGAATT+TGG + chr1_4:66632109-66632128 Msa0179200:CDS 45.0%
GAGGTGGAATTTGGCAATGA+TGG + chr1_4:66632118-66632137 Msa0179200:CDS 45.0%
GGTGGAATTTGGCAATGATG+GGG + chr1_4:66632120-66632139 Msa0179200:CDS 45.0%
! CAATGATGGGGACTATTCAG+AGG + chr1_4:66632132-66632151 Msa0179200:CDS 45.0%
!! AATCCACTGCCAGTGTTGAT+TGG - chr1_4:66632386-66632405 None:intergenic 45.0%
CATTCAAGGACAATGTAGCG+AGG + chr1_4:66632430-66632449 Msa0179200:CDS 45.0%
ATGCCTTATGCAGCAGTTTG+AGG + chr1_4:66632510-66632529 Msa0179200:intron 45.0%
GTGGCAGGTGAATTAAACAC+AGG - chr1_4:66632563-66632582 None:intergenic 45.0%
GTGTTTAATTCACCTGCCAC+CGG + chr1_4:66632563-66632582 Msa0179200:intron 45.0%
GAACAGAACAAACTGACCCT+TGG + chr1_4:66632815-66632834 Msa0179200:intron 45.0%
!! GTTCTGGAGATTGGTAATGC+TGG + chr1_4:66633009-66633028 Msa0179200:CDS 45.0%
CCTTGCTTAAAGAGAGACCA+AGG - chr1_4:66633060-66633079 None:intergenic 45.0%
CCTTGGTCTCTCTTTAAGCA+AGG + chr1_4:66633057-66633076 Msa0179200:CDS 45.0%
TGGTCTCTCTTTAAGCAAGG+AGG + chr1_4:66633060-66633079 Msa0179200:CDS 45.0%
! ACCAATTTGAAGCAGCAACC+TGG + chr1_4:66633607-66633626 Msa0179200:CDS 45.0%
! CCAATTTGAAGCAGCAACCT+GGG + chr1_4:66633608-66633627 Msa0179200:CDS 45.0%
!!! TATCTTTAAAAAATAATTAT+CGG + chr1_4:66631320-66631339 Msa0179200:intron 5.0%
GTCTTGGAGAAGAAGGGAGA+TGG - chr1_4:66627625-66627644 None:intergenic 50.0%
!! GAGCTGGTCTTGGAGAAGAA+GGG - chr1_4:66627631-66627650 None:intergenic 50.0%
!! AGAGCTGGTCTTGGAGAAGA+AGG - chr1_4:66627632-66627651 None:intergenic 50.0%
! TTGCAGAACAGAGCTGGTCT+TGG - chr1_4:66627641-66627660 None:intergenic 50.0%
GAGCATTTGCAGAACAGAGC+TGG - chr1_4:66627647-66627666 None:intergenic 50.0%
! AGAGGGGTTGTGATGACGTA+GGG - chr1_4:66627692-66627711 None:intergenic 50.0%
! AAGAGGGGTTGTGATGACGT+AGG - chr1_4:66627693-66627712 None:intergenic 50.0%
! GGGGCGTTAACGTAGTAAAG+AGG - chr1_4:66627710-66627729 None:intergenic 50.0%
GTTAACGCCCCTCCTCATAT+GGG + chr1_4:66627719-66627738 Msa0179200:CDS 50.0%
AGGTACCTGAAAGCGAGCAA+TGG - chr1_4:66627774-66627793 None:intergenic 50.0%
!! ATTACCGGCACCGATGAACA+TGG + chr1_4:66627889-66627908 Msa0179200:CDS 50.0%
GAAAATTGCAACTGCTGCCG+TGG + chr1_4:66627915-66627934 Msa0179200:CDS 50.0%
GAGATTGCAATGGTCCGTAG+GGG - chr1_4:66627953-66627972 None:intergenic 50.0%
GCCATCTTTCCGTTTACACG+AGG + chr1_4:66628990-66629009 Msa0179200:CDS 50.0%
!! CGACCTTAAGGAGTGCTAAC+TGG - chr1_4:66629271-66629290 None:intergenic 50.0%
TTCTGTCTTCCCTTGTCGGT+AGG + chr1_4:66629392-66629411 Msa0179200:intron 50.0%
CTGGATCAATAGTGGCCTGA+GGG + chr1_4:66629734-66629753 Msa0179200:CDS 50.0%
GGGAAATGGAAAAGTCCCTC+AGG - chr1_4:66629752-66629771 None:intergenic 50.0%
ATCAACGGATGCTCGGGAAA+TGG - chr1_4:66629766-66629785 None:intergenic 50.0%
TTTCCCGAGCATCCGTTGAT+TGG + chr1_4:66629766-66629785 Msa0179200:CDS 50.0%
! TTCCCGAGCATCCGTTGATT+GGG + chr1_4:66629767-66629786 Msa0179200:CDS 50.0%
! TGAGTCTTGTCACTCGGAAC+AGG - chr1_4:66629798-66629817 None:intergenic 50.0%
ATCAGCACTAGCTGATGACC+AGG + chr1_4:66630146-66630165 Msa0179200:CDS 50.0%
AGCTGGCCAACCTGAAGAAA+CGG - chr1_4:66630193-66630212 None:intergenic 50.0%
CCAATCAAGTGCAGTGTAGC+TGG - chr1_4:66630210-66630229 None:intergenic 50.0%
CCAGCTACACTGCACTTGAT+TGG + chr1_4:66630207-66630226 Msa0179200:CDS 50.0%
TAGCTGGCCAATAAACGGCA+TGG - chr1_4:66630711-66630730 None:intergenic 50.0%
CCAGCAGACATTAGCATAGC+TGG - chr1_4:66630727-66630746 None:intergenic 50.0%
CCAGCTATGCTAATGTCTGC+TGG + chr1_4:66630724-66630743 Msa0179200:CDS 50.0%
TGGGCTAAGCCTTCCCAAAA+TGG + chr1_4:66630744-66630763 Msa0179200:CDS 50.0%
!! GGCCGTATACCATTTTGGGA+AGG - chr1_4:66630756-66630775 None:intergenic 50.0%
CCCAAAATGGTATACGGCCA+TGG + chr1_4:66630757-66630776 Msa0179200:CDS 50.0%
ATGCTGAGTAGGCCTGTTCA+TGG + chr1_4:66630892-66630911 Msa0179200:intron 50.0%
GCCTGTTCATGGTTCAGTCA+TGG + chr1_4:66630903-66630922 Msa0179200:intron 50.0%
CCCATGACTGAACCATGAAC+AGG - chr1_4:66630907-66630926 None:intergenic 50.0%
ATCGCACAATTGCAGCGGTT+TGG - chr1_4:66630984-66631003 None:intergenic 50.0%
TCAACCGTGTGCTCAATGCT+AGG - chr1_4:66631572-66631591 None:intergenic 50.0%
TGCCAAATTCCACCTCTCTG+AGG - chr1_4:66632114-66632133 None:intergenic 50.0%
! AACACTGGCAGTGGATTCCA+CGG + chr1_4:66632389-66632408 Msa0179200:CDS 50.0%
TAGCGAGGCTGGTAAAGTCT+AGG + chr1_4:66632445-66632464 Msa0179200:intron 50.0%
AGATTGTCTTATCCGGTGGC+AGG - chr1_4:66632578-66632597 None:intergenic 50.0%
AGCCTCACAAGCTGATGTCA+GGG - chr1_4:66632989-66633008 None:intergenic 50.0%
ATCAGCTTGTGAGGCTGTTC+TGG + chr1_4:66632993-66633012 Msa0179200:CDS 50.0%
!! TGTGAGGCTGTTCTGGAGAT+TGG + chr1_4:66633000-66633019 Msa0179200:CDS 50.0%
GAACTCAAGCTCGGAGTAAC+AGG - chr1_4:66633555-66633574 None:intergenic 50.0%
ATGCACAGCTTGGCTATTCC+AGG + chr1_4:66633583-66633602 Msa0179200:CDS 50.0%
TGCACAGCTTGGCTATTCCA+GGG + chr1_4:66633584-66633603 Msa0179200:CDS 50.0%
! TGCTGCTTCAAATTGGTCCC+TGG - chr1_4:66633604-66633623 None:intergenic 50.0%
! CCCAGGTTGCTGCTTCAAAT+TGG - chr1_4:66633611-66633630 None:intergenic 50.0%
TAGAGAGATACCAAGTGGGG+TGG + chr1_4:66633703-66633722 Msa0179200:intron 50.0%
! TACCAAGTGGGGTGGACTTA+AGG + chr1_4:66633711-66633730 Msa0179200:CDS 50.0%
! ACCAAGTGGGGTGGACTTAA+GGG + chr1_4:66633712-66633731 Msa0179200:CDS 50.0%
! GATTGGTTGAGGTTGAGCCA+TGG - chr1_4:66633746-66633765 None:intergenic 50.0%
GAAGACAAAGGGGTTGCAGT+CGG + chr1_4:66633796-66633815 Msa0179200:CDS 50.0%
TGCGGGAAAGAAACGGCTTG+AGG + chr1_4:66627488-66627507 Msa0179200:five_prime_UTR 55.0%
GGGAAAGAAACGGCTTGAGG+AGG + chr1_4:66627491-66627510 Msa0179200:five_prime_UTR 55.0%
CGTTAACGCCCCTCCTCATA+TGG + chr1_4:66627718-66627737 Msa0179200:CDS 55.0%
! AAGCGCTGCCCATATGAGGA+GGG - chr1_4:66627730-66627749 None:intergenic 55.0%
! TAAGCGCTGCCCATATGAGG+AGG - chr1_4:66627731-66627750 None:intergenic 55.0%
! GAGTAAGCGCTGCCCATATG+AGG - chr1_4:66627734-66627753 None:intergenic 55.0%
CTGAAAGCGAGCAATGGCGT+CGG - chr1_4:66627768-66627787 None:intergenic 55.0%
CTCACCATGTTCATCGGTGC+CGG - chr1_4:66627896-66627915 None:intergenic 55.0%
ATTGCAATGGTCCGTAGGGG+TGG - chr1_4:66627950-66627969 None:intergenic 55.0%
! TTGGGGAAGCATGCATGGGT+GGG - chr1_4:66629558-66629577 None:intergenic 55.0%
! TTTGGGGAAGCATGCATGGG+TGG - chr1_4:66629559-66629578 None:intergenic 55.0%
CCTCAGGCCACTATTGATCC+AGG - chr1_4:66629736-66629755 None:intergenic 55.0%
CCTGGATCAATAGTGGCCTG+AGG + chr1_4:66629733-66629752 Msa0179200:CDS 55.0%
! TCCCGAGCATCCGTTGATTG+GGG + chr1_4:66629768-66629787 Msa0179200:CDS 55.0%
TGCCCCAATCAACGGATGCT+CGG - chr1_4:66629773-66629792 None:intergenic 55.0%
CGGCCATGGATTCTTGACGA+AGG + chr1_4:66630771-66630790 Msa0179200:CDS 55.0%
! GGCACCTAGCATTGAGCACA+CGG + chr1_4:66631565-66631584 Msa0179200:intron 55.0%
CTGCCAATCAACACTGGCAG+TGG + chr1_4:66632380-66632399 Msa0179200:CDS 55.0%
ATTTCCTTCTGCAGCCACCG+TGG - chr1_4:66632409-66632428 None:intergenic 55.0%
CAAGGACAATGTAGCGAGGC+TGG + chr1_4:66632434-66632453 Msa0179200:CDS 55.0%
GGGAGCTGCCTGTAACACAA+AGG + chr1_4:66632906-66632925 Msa0179200:intron 55.0%
CTCCCTGACATCAGCTTGTG+AGG + chr1_4:66632984-66633003 Msa0179200:CDS 55.0%
CAGCCTCACAAGCTGATGTC+AGG - chr1_4:66632990-66633009 None:intergenic 55.0%
! AGGGGCACGCTCATCCATAT+AGG - chr1_4:66633040-66633059 None:intergenic 55.0%
ATATGGATGAGCGTGCCCCT+TGG + chr1_4:66633040-66633059 Msa0179200:CDS 55.0%
!! TGCTTCTGAAGCAGCTGCCA+AGG + chr1_4:66633086-66633105 Msa0179200:CDS 55.0%
ACCCTTAAGTCCACCCCACT+TGG - chr1_4:66633716-66633735 None:intergenic 55.0%
! AAGTGGGGTGGACTTAAGGG+TGG + chr1_4:66633715-66633734 Msa0179200:CDS 55.0%
AGCGCTGCCCATATGAGGAG+GGG - chr1_4:66627729-66627748 None:intergenic 60.0%
! AAAGCGAGCAATGGCGTCGG+CGG - chr1_4:66627765-66627784 None:intergenic 60.0%
CGACGCCATTGCTCGCTTTC+AGG + chr1_4:66627766-66627785 Msa0179200:CDS 60.0%
AGGGGTGGAACCTTGAGCCA+CGG - chr1_4:66627935-66627954 None:intergenic 60.0%
GGCTCAAGGTTCCACCCCTA+CGG + chr1_4:66627936-66627955 Msa0179200:intron 60.0%
! TGGGGAAGCATGCATGGGTG+GGG - chr1_4:66629557-66629576 None:intergenic 60.0%
GCCCCAATCAACGGATGCTC+GGG - chr1_4:66629772-66629791 None:intergenic 60.0%
! ACTGGCAGTGGATTCCACGG+TGG + chr1_4:66632392-66632411 Msa0179200:CDS 60.0%
GATTCCACGGTGGCTGCAGA+AGG + chr1_4:66632402-66632421 Msa0179200:CDS 60.0%
ACTTAAGGGTGGCCAGGCCA+TGG + chr1_4:66633726-66633745 Msa0179200:CDS 60.0%
GTTGAGGTTGAGCCATGGCC+TGG - chr1_4:66633741-66633760 None:intergenic 60.0%
GCAACTGCTGCCGTGGCTCA+AGG + chr1_4:66627922-66627941 Msa0179200:CDS 65.0%
! GGGTGGACTTAAGGGTGGCC+AGG + chr1_4:66633720-66633739 Msa0179200:CDS 65.0%
!! AATGGCGTCGGCGGCGATGG+TGG - chr1_4:66627756-66627775 None:intergenic 70.0%
!! AGCAATGGCGTCGGCGGCGA+TGG - chr1_4:66627759-66627778 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 66627427 66634074 66627427 ID=Msa0179200;Name=Msa0179200
chr1_4 mRNA 66627427 66634074 66627427 ID=Msa0179200-mRNA-1;Parent=Msa0179200;Name=Msa0179200-mRNA-1;_AED=0.17;_eAED=0.17;_QI=100|0.90|0.83|1|1|1|12|195|576
chr1_4 exon 66627427 66627787 66627427 ID=Msa0179200-mRNA-1:exon:21834;Parent=Msa0179200-mRNA-1
chr1_4 exon 66627862 66627943 66627862 ID=Msa0179200-mRNA-1:exon:21835;Parent=Msa0179200-mRNA-1
chr1_4 exon 66628435 66628580 66628435 ID=Msa0179200-mRNA-1:exon:21836;Parent=Msa0179200-mRNA-1
chr1_4 exon 66628844 66629011 66628844 ID=Msa0179200-mRNA-1:exon:21837;Parent=Msa0179200-mRNA-1
chr1_4 exon 66629726 66629850 66629726 ID=Msa0179200-mRNA-1:exon:21838;Parent=Msa0179200-mRNA-1
chr1_4 exon 66630140 66630233 66630140 ID=Msa0179200-mRNA-1:exon:21839;Parent=Msa0179200-mRNA-1
chr1_4 exon 66630694 66630792 66630694 ID=Msa0179200-mRNA-1:exon:21840;Parent=Msa0179200-mRNA-1
chr1_4 exon 66632019 66632199 66632019 ID=Msa0179200-mRNA-1:exon:21841;Parent=Msa0179200-mRNA-1
chr1_4 exon 66632340 66632455 66632340 ID=Msa0179200-mRNA-1:exon:21842;Parent=Msa0179200-mRNA-1
chr1_4 exon 66632952 66633107 66632952 ID=Msa0179200-mRNA-1:exon:21843;Parent=Msa0179200-mRNA-1
chr1_4 exon 66633501 66633629 66633501 ID=Msa0179200-mRNA-1:exon:21844;Parent=Msa0179200-mRNA-1
chr1_4 exon 66633706 66634074 66633706 ID=Msa0179200-mRNA-1:exon:21845;Parent=Msa0179200-mRNA-1
chr1_4 five_prime_UTR 66627427 66627526 66627427 ID=Msa0179200-mRNA-1:five_prime_utr;Parent=Msa0179200-mRNA-1
chr1_4 CDS 66627527 66627787 66627527 ID=Msa0179200-mRNA-1:cds;Parent=Msa0179200-mRNA-1
chr1_4 CDS 66627862 66627943 66627862 ID=Msa0179200-mRNA-1:cds;Parent=Msa0179200-mRNA-1
chr1_4 CDS 66628435 66628580 66628435 ID=Msa0179200-mRNA-1:cds;Parent=Msa0179200-mRNA-1
chr1_4 CDS 66628844 66629011 66628844 ID=Msa0179200-mRNA-1:cds;Parent=Msa0179200-mRNA-1
chr1_4 CDS 66629726 66629850 66629726 ID=Msa0179200-mRNA-1:cds;Parent=Msa0179200-mRNA-1
chr1_4 CDS 66630140 66630233 66630140 ID=Msa0179200-mRNA-1:cds;Parent=Msa0179200-mRNA-1
chr1_4 CDS 66630694 66630792 66630694 ID=Msa0179200-mRNA-1:cds;Parent=Msa0179200-mRNA-1
chr1_4 CDS 66632019 66632199 66632019 ID=Msa0179200-mRNA-1:cds;Parent=Msa0179200-mRNA-1
chr1_4 CDS 66632340 66632455 66632340 ID=Msa0179200-mRNA-1:cds;Parent=Msa0179200-mRNA-1
chr1_4 CDS 66632952 66633107 66632952 ID=Msa0179200-mRNA-1:cds;Parent=Msa0179200-mRNA-1
chr1_4 CDS 66633501 66633629 66633501 ID=Msa0179200-mRNA-1:cds;Parent=Msa0179200-mRNA-1
chr1_4 CDS 66633706 66633879 66633706 ID=Msa0179200-mRNA-1:cds;Parent=Msa0179200-mRNA-1
chr1_4 three_prime_UTR 66633880 66634074 66633880 ID=Msa0179200-mRNA-1:three_prime_utr;Parent=Msa0179200-mRNA-1
Gene Sequence

>Msa0179200

ATGGCAGTGAGAATGAACTGTTCGTTGCAGAACACACTCTCCATTCTTTCACTTCGTTCCAATGTTTCTCACCTCAAATCCAATAAACCCTATTTCCATCTCCCTTCTTCTCCAAGACCAGCTCTGTTCTGCAAATGCTCCACTTCCTCAAATGATGACGAACCCTACGTCATCACAACCCCTCTTTACTACGTTAACGCCCCTCCTCATATGGGCAGCGCTTACTCCACCATCGCCGCCGACGCCATTGCTCGCTTTCAGCGGCTATTGGGAAAGAAAGTTATATTCATTACCGGCACCGATGAACATGGTGAGAAAATTGCAACTGCTGCCGTGGCTCAAGATATTTCGTACGATAAGTTCATTAGAACAACAGATAGCAAGCATGAAGCAATTGTGAAGGAATTTTATTCGAGAGTGCTTGCCAATGGTGACATTTACCGAGCTGATTATGAGGGAATTTATTGTGTCAGCTGTGAGGAATATAAGGATGAGAAGGAACTGCTTGAAAATAATTGTTGTCCGATCCACCTTAAGCCTTGTGTTTCAAGGAAAGAGGACAATTATTTTTTCGCACTGTCAAAATATCAGAAGTCATTGGAGGAAATTTTGAATAAAAATCCAAACTTTGTGCAGCCATCTTTCCGTTTACACGAGGTTCAAACCTGGATCAATAGTGGCCTGAGGGACTTTTCCATTTCCCGAGCATCCGTTGATTGGGGCATACCTGTTCCGAGTGACAAGACTCAGACTATATATGTATGGTTTGATGCTTTACTAGGCTACATATCAGCACTAGCTGATGACCAGGAGCAACCTGATTTACTAAACACCGTTTCTTCAGGTTGGCCAGCTACACTGCACTTGATTGGTAAGGATATTCTACGTTTCCATGCCGTTTATTGGCCAGCTATGCTAATGTCTGCTGGGCTAAGCCTTCCCAAAATGGTATACGGCCATGGATTCTTGACGAAGGATGGTATGAAGATGGGCAAGTCACTAGGAAATACGCTTGAACCAAACGATTTGGTTAGTAAGTTTGGGACAGATGCAGTTAGATACTTCTTCCTCAGAGAGGTGGAATTTGGCAATGATGGGGACTATTCAGAGGAACGCTTCATCAATATTGTAAATGCACATCTTGCCAATACAATTGGAAATCTTCTTAATAGGACTCTAGGACTTCTGAAAAAGAACTGCCAATCAACACTGGCAGTGGATTCCACGGTGGCTGCAGAAGGAAATGCATTCAAGGACAATGTAGCGAGGCTGGTTGATAAAGCTCATATGCACTATGAAAATCTCTCCCTGACATCAGCTTGTGAGGCTGTTCTGGAGATTGGTAATGCTGGTAATTCCTATATGGATGAGCGTGCCCCTTGGTCTCTCTTTAAGCAAGGAGGTACTGCTTCTGAAGCAGCTGCCAAGGACCTTGTAATTATATTAGAGACAGTGAGAATTATTGCCATTGCACTATCTCCTGTTACTCCGAGCTTGAGTTCGAGAATATATGCACAGCTTGGCTATTCCAGGGACCAATTTGAAGCAGCAACCTGGAGAGATACCAAGTGGGGTGGACTTAAGGGTGGCCAGGCCATGGCTCAACCTCAACCAATCTTTGCTAGGATTGAAAATCAAACTGAAGTGGAAGACAAAGGGGTTGCAGTCGGTAAGAAGACTCTGAAAAGTAAAGGGAAGTCGAAACAAGCTCAAGAAGTTGTTGGAGCTTAG
Protein sequence

>Msa0179200

MAVRMNCSLQNTLSILSLRSNVSHLKSNKPYFHLPSSPRPALFCKCSTSSNDDEPYVITTPLYYVNAPPHMGSAYSTIAADAIARFQRLLGKKVIFITGTDEHGEKIATAAVAQDISYDKFIRTTDSKHEAIVKEFYSRVLANGDIYRADYEGIYCVSCEEYKDEKELLENNCCPIHLKPCVSRKEDNYFFALSKYQKSLEEILNKNPNFVQPSFRLHEVQTWINSGLRDFSISRASVDWGIPVPSDKTQTIYVWFDALLGYISALADDQEQPDLLNTVSSGWPATLHLIGKDILRFHAVYWPAMLMSAGLSLPKMVYGHGFLTKDGMKMGKSLGNTLEPNDLVSKFGTDAVRYFFLREVEFGNDGDYSEERFINIVNAHLANTIGNLLNRTLGLLKKNCQSTLAVDSTVAAEGNAFKDNVARLVDKAHMHYENLSLTSACEAVLEIGNAGNSYMDERAPWSLFKQGGTASEAAAKDLVIILETVRIIAIALSPVTPSLSSRIYAQLGYSRDQFEAATWRDTKWGGLKGGQAMAQPQPIFARIENQTEVEDKGVAVGKKTLKSKGKSKQAQEVVGA*