AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1039510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1039510 MtrunA17_Chr7g0272351 95.652 92 4 0 1 92 1 92 1.60e-59 179
Msa1039510 MtrunA17_Chr1g0192251 66.990 103 30 3 1 101 1 101 5.52e-37 122
Msa1039510 MtrunA17_Chr8g0344711 39.316 117 53 5 1 117 1 99 6.37e-13 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1039510 AT1G56220.2 72.093 86 22 2 1 84 1 86 1.70e-36 121
Msa1039510 AT1G56220.4 72.093 86 22 2 1 84 26 111 2.05e-36 121
Msa1039510 AT1G56220.1 72.093 86 22 2 1 84 1 86 4.15e-36 120
Msa1039510 AT1G56220.3 72.093 86 22 2 1 84 26 111 4.48e-36 121
Msa1039510 AT1G56220.5 72.093 86 22 2 1 84 26 111 4.79e-36 121
Msa1039510 AT1G54070.1 47.761 67 21 2 1 67 1 53 1.90e-11 57.4

Find 97 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGCATATTGAATAATTT+TGG 0.110350 7_1:+76760005 None:intergenic
AAATACGCCTGATCCATTTA+TGG 0.220010 7_1:-76762102 Msa1039510:exon
CTGAATAATAACCTATTTCT+TGG 0.223389 7_1:-76760183 Msa1039510:three_prime_UTR
TCTATATTCTCGATCCATTT+TGG 0.241117 7_1:-76760130 Msa1039510:three_prime_UTR
ACTGAGGATGTTACCCCTTT+TGG 0.276386 7_1:-76760508 Msa1039510:three_prime_UTR
ACGAGAGATTGCCAAGAAAT+AGG 0.310445 7_1:+76760172 None:intergenic
AAGAAGGGCCTGATCTGTTT+TGG 0.319411 7_1:+76760581 None:intergenic
TCAATATCCTCATACCAAAA+TGG 0.330914 7_1:+76760116 None:intergenic
GGGGTAACATCCTCAGTTTC+CGG 0.345096 7_1:+76760514 None:intergenic
AGTGAACAATGGAACAATAA+TGG 0.359458 7_1:-76759950 Msa1039510:three_prime_UTR
GTTAGGCATGGCGCTCTGTT+TGG 0.361146 7_1:-76760395 Msa1039510:three_prime_UTR
TGGTCGAGAAGGCCCATAAA+TGG 0.361724 7_1:+76762089 None:intergenic
TGTGTATATAGATCCTTTAC+TGG 0.368772 7_1:-76760241 Msa1039510:three_prime_UTR
GTGAATAATAACGACCTTAC+CGG 0.378031 7_1:+76761352 None:intergenic
AATACGCCTGATCCATTTAT+GGG 0.399260 7_1:-76762101 Msa1039510:exon
CGATCCCAATGACCAGATTC+CGG 0.418252 7_1:+76762145 None:intergenic
TACCCTTGCCAGAGCTAGAT+CGG 0.420036 7_1:+76761988 None:intergenic
CAGGAACTAGAGATTCCTTT+CGG 0.426315 7_1:-76760645 Msa1039510:CDS
CCGAGACCGTTCTCCGGCCG+AGG 0.426718 7_1:+76762041 None:intergenic
CGACGGTGTCGTCCCACAAC+TGG 0.429141 7_1:+76762069 None:intergenic
ACCGTTCTCCGGCCGAGGGC+CGG 0.433178 7_1:+76762046 None:intergenic
CTCCGGCCGAGGGCCGGCGA+CGG 0.445786 7_1:+76762052 None:intergenic
CACCGTCGCCGGCCCTCGGC+CGG 0.447404 7_1:-76762054 Msa1039510:CDS
GTATCTCTTACACCGGAATC+TGG 0.448206 7_1:-76762157 Msa1039510:five_prime_UTR
AGAACGGTCTCGGCAAGCTT+CGG 0.450915 7_1:-76762031 Msa1039510:CDS
TTTGTGCTGCGGTTCACGTT+AGG 0.456617 7_1:-76760412 Msa1039510:three_prime_UTR
TACACCGGAATCTGGTCATT+GGG 0.458037 7_1:-76762149 Msa1039510:five_prime_UTR
TCGCCTCTGGCTTCTCCCGC+CGG 0.458567 7_1:-76761401 Msa1039510:CDS
TGGGCCTTCTCGACCAGTTG+TGG 0.460801 7_1:-76762082 Msa1039510:CDS
TATTACAGCAAAGGCCAAAA+GGG 0.461978 7_1:+76760494 None:intergenic
TTACACCGGAATCTGGTCAT+TGG 0.463228 7_1:-76762150 Msa1039510:five_prime_UTR
TACACCGCTATCCTACCCTT+TGG 0.465088 7_1:+76760278 None:intergenic
ACGACACCGTCGCCGGCCCT+CGG 0.467035 7_1:-76762058 Msa1039510:CDS
CCTCGGCCGGAGAACGGTCT+CGG 0.467575 7_1:-76762041 Msa1039510:CDS
TCAATATGCATGTCGGAAGA+TGG 0.467631 7_1:-76759995 Msa1039510:three_prime_UTR
TTATTACAGCAAAGGCCAAA+AGG 0.472228 7_1:+76760493 None:intergenic
CGCATTCAATCAGTGAACAA+TGG 0.473374 7_1:-76759961 Msa1039510:three_prime_UTR
CTTTCGGTTTCGACGAAGGT+CGG 0.476530 7_1:-76760629 Msa1039510:CDS
GCCGGCCCTCGGCCGGAGAA+CGG 0.477433 7_1:-76762047 Msa1039510:CDS
GGGCCTTCTCGACCAGTTGT+GGG 0.477739 7_1:-76762081 Msa1039510:CDS
ATAACGACCTTACCGGAAAA+CGG 0.482174 7_1:+76761359 None:intergenic
GTACGAAAGTGGATCGCCTC+TGG 0.484048 7_1:-76761414 Msa1039510:CDS
CGCCCGATCTAGCTCTGGCA+AGG 0.484849 7_1:-76761991 Msa1039510:CDS
AAGAAAGGCCAAAACAGATC+AGG 0.489997 7_1:-76760589 Msa1039510:CDS
ATCATGATCGTGAAACCGCC+AGG 0.492141 7_1:-76761437 Msa1039510:CDS
AGAAGGCCCATAAATGGATC+AGG 0.497794 7_1:+76762095 None:intergenic
TTCGCCGCCCGATCTAGCTC+TGG 0.500632 7_1:-76761996 Msa1039510:CDS
AACAATAATGGACATGAAGA+AGG 0.503571 7_1:-76759938 Msa1039510:three_prime_UTR
AGAGCTAGATCGGGCGGCGA+AGG 0.508256 7_1:+76761998 None:intergenic
CGCAGTAGTATCTCTTACAC+CGG 0.520795 7_1:-76762164 Msa1039510:five_prime_UTR
TGTAAGTAAAGAAGTCCAAA+GGG 0.521024 7_1:-76760293 Msa1039510:three_prime_UTR
GTTTCGACGAAGGTCGGCAT+CGG 0.527766 7_1:-76760623 Msa1039510:CDS
CACACATCGATAGGAGAAGA+AGG 0.528061 7_1:+76760565 None:intergenic
ATTCCTTTCGGTTTCGACGA+AGG 0.530725 7_1:-76760633 Msa1039510:CDS
TCCCGCCGGTTCTACTACTC+CGG 0.530743 7_1:-76761387 Msa1039510:CDS
GTTTATTTGTGTGCATGTAT+CGG 0.533623 7_1:-76760460 Msa1039510:three_prime_UTR
CAATATGCATGTCGGAAGAT+GGG 0.533830 7_1:-76759994 Msa1039510:three_prime_UTR
ACCCTTGCCAGAGCTAGATC+GGG 0.537273 7_1:+76761989 None:intergenic
AGCTTGCCGAGACCGTTCTC+CGG 0.541689 7_1:+76762035 None:intergenic
GCTGCGGTTCACGTTAGGCA+TGG 0.543848 7_1:-76760407 Msa1039510:three_prime_UTR
GCGGGAAGCGTGAGATCGTA+CGG 0.546978 7_1:-76761500 Msa1039510:CDS
ATCGTACGGTGAGGAATCGT+CGG 0.548167 7_1:-76761486 Msa1039510:CDS
AGACACCGGAGTAGTAGAAC+CGG 0.549756 7_1:+76761382 None:intergenic
AAACCGCCAGGGTACGAAAG+TGG 0.556609 7_1:-76761425 Msa1039510:CDS
GAACCGGCGGGAGAAGCCAG+AGG 0.561661 7_1:+76761398 None:intergenic
CGAGACCGTTCTCCGGCCGA+GGG 0.565198 7_1:+76762042 None:intergenic
GGCGATCCACTTTCGTACCC+TGG 0.568040 7_1:+76761419 None:intergenic
CGACCTTCGTCGAAACCGAA+AGG 0.571902 7_1:+76760630 None:intergenic
TTGTAAGTAAAGAAGTCCAA+AGG 0.575124 7_1:-76760294 Msa1039510:three_prime_UTR
ATGGATCGAGAATATAGAGC+AGG 0.575307 7_1:+76760135 None:intergenic
ACGCTTGATAATGAGACAGC+CGG 0.577962 7_1:-76760033 Msa1039510:three_prime_UTR
TCGGATGCATACGAGAAGAA+AGG 0.583908 7_1:-76760604 Msa1039510:CDS
AAATTATTCAATATGCATGT+CGG 0.584174 7_1:-76760002 Msa1039510:three_prime_UTR
GCCCGATCTAGCTCTGGCAA+GGG 0.585634 7_1:-76761990 Msa1039510:intron
TTTATCTTCTCCGGAAACTG+AGG 0.585992 7_1:-76760524 Msa1039510:three_prime_UTR
GATTGATCAGAAATGGAGGC+GGG 0.586985 7_1:-76761518 Msa1039510:intron
CGTCCCACAACTGGTCGAGA+AGG 0.590163 7_1:+76762078 None:intergenic
CATGTATCGGTGTAATGCAT+TGG 0.591207 7_1:-76760447 Msa1039510:three_prime_UTR
TTGTGGGACGACACCGTCGC+CGG 0.591995 7_1:-76762065 Msa1039510:CDS
CTCATTTCTCACACATCGAT+AGG 0.601241 7_1:+76760556 None:intergenic
TGATTGATCAGAAATGGAGG+CGG 0.603270 7_1:-76761519 Msa1039510:intron
AGTAAAGAAGTCCAAAGGGT+AGG 0.604534 7_1:-76760289 Msa1039510:three_prime_UTR
GTGTATATAGATCCTTTACT+GGG 0.611023 7_1:-76760240 Msa1039510:three_prime_UTR
TCTTCATGGGATGGCTACAG+AGG 0.611027 7_1:-76760061 Msa1039510:three_prime_UTR
AATTGATTGATCAGAAATGG+AGG 0.625094 7_1:-76761522 Msa1039510:intron
TTACCGGAAAACGGAGACAC+CGG 0.636278 7_1:+76761368 None:intergenic
ACACATCGATAGGAGAAGAA+GGG 0.647952 7_1:+76760566 None:intergenic
CACCGGAGTAGTAGAACCGG+CGG 0.650193 7_1:+76761385 None:intergenic
ATTACAGCAAAGGCCAAAAG+GGG 0.651252 7_1:+76760495 None:intergenic
TCATGATCGTGAAACCGCCA+GGG 0.653940 7_1:-76761436 Msa1039510:CDS
CTTGCCAGAGCTAGATCGGG+CGG 0.658767 7_1:+76761992 None:intergenic
AAGTCCAAAGGGTAGGATAG+CGG 0.674778 7_1:-76760282 Msa1039510:three_prime_UTR
ACCGGAGTAGTAGAACCGGC+GGG 0.676139 7_1:+76761386 None:intergenic
CCGGAGAAGATAAAATGCGG+TGG 0.684216 7_1:+76760533 None:intergenic
GATCCACTTTCGTACCCTGG+CGG 0.709901 7_1:+76761422 None:intergenic
AAGCGTGAGATCGTACGGTG+AGG 0.726983 7_1:-76761495 Msa1039510:CDS
TTTCCGGAGAAGATAAAATG+CGG 0.732385 7_1:+76760530 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATAAGTTTTTTTTTTGA+AGG - chr7_1:76760898-76760917 Msa1039510:intron 10.0%
!! ATCATTTATAATAACAATAA+TGG - chr7_1:76761238-76761257 Msa1039510:intron 10.0%
!! AAAAAAAAAAACTTATTACA+CGG + chr7_1:76761729-76761748 None:intergenic 10.0%
!!! AGTTTTTTTTTTTTTTTTGA+AGG - chr7_1:76761736-76761755 Msa1039510:intron 10.0%
!!! TTAATAAGTTTTTTTTTTGA+AGG - chr7_1:76760898-76760917 Msa1039510:intron 10.0%
!! ATCATTTATAATAACAATAA+TGG - chr7_1:76761238-76761257 Msa1039510:intron 10.0%
!! AAAAAAAAAAACTTATTACA+CGG + chr7_1:76761729-76761748 None:intergenic 10.0%
!!! AGTTTTTTTTTTTTTTTTGA+AGG - chr7_1:76761736-76761755 Msa1039510:intron 10.0%
!! AAATTATATACGAGAAATTA+AGG + chr7_1:76760120-76760139 None:intergenic 15.0%
!! AAAATTTAAAAGCAAAAGTT+AGG + chr7_1:76760870-76760889 None:intergenic 15.0%
!! CAATTATATTGTCATATTTA+AGG - chr7_1:76761158-76761177 Msa1039510:intron 15.0%
!!! TTTATAATAACAATAATGGA+AGG - chr7_1:76761242-76761261 Msa1039510:intron 15.0%
!! AAATTATATACGAGAAATTA+AGG + chr7_1:76760120-76760139 None:intergenic 15.0%
!! AAAATTTAAAAGCAAAAGTT+AGG + chr7_1:76760870-76760889 None:intergenic 15.0%
!! CAATTATATTGTCATATTTA+AGG - chr7_1:76761158-76761177 Msa1039510:intron 15.0%
!!! TTTATAATAACAATAATGGA+AGG - chr7_1:76761242-76761261 Msa1039510:intron 15.0%
!! TGAAGGTTAATCAATATTAA+CGG + chr7_1:76760241-76760260 None:intergenic 20.0%
!! GAAAAAAATTATTACAGCAA+AGG + chr7_1:76761582-76761601 None:intergenic 20.0%
!!! AGATTCTTTTAAGTCTTATT+AGG - chr7_1:76761699-76761718 Msa1039510:intron 20.0%
!!! CATGCATATTGAATAATTTT+GGG + chr7_1:76762061-76762080 None:intergenic 20.0%
!!! ACATGCATATTGAATAATTT+TGG + chr7_1:76762062-76762081 None:intergenic 20.0%
!! AAATTATTCAATATGCATGT+CGG - chr7_1:76762062-76762081 Msa1039510:CDS 20.0%
!! TGAAGGTTAATCAATATTAA+CGG + chr7_1:76760241-76760260 None:intergenic 20.0%
!! GAAAAAAATTATTACAGCAA+AGG + chr7_1:76761582-76761601 None:intergenic 20.0%
!!! AGATTCTTTTAAGTCTTATT+AGG - chr7_1:76761699-76761718 Msa1039510:intron 20.0%
!!! CATGCATATTGAATAATTTT+GGG + chr7_1:76762061-76762080 None:intergenic 20.0%
!!! ACATGCATATTGAATAATTT+TGG + chr7_1:76762062-76762081 None:intergenic 20.0%
!! AAATTATTCAATATGCATGT+CGG - chr7_1:76762062-76762081 Msa1039510:CDS 20.0%
! TTATATACGAGAAATTAAGG+TGG + chr7_1:76760117-76760136 None:intergenic 25.0%
!!! AATTTTAGCGATAACCTTTT+TGG + chr7_1:76760172-76760191 None:intergenic 25.0%
! CAATTCGATATTCAATTTGA+AGG + chr7_1:76760258-76760277 None:intergenic 25.0%
!! AAGCTTGAAGTTTGAAATTA+TGG - chr7_1:76760316-76760335 Msa1039510:three_prime_UTR 25.0%
!!! AGTTCTTGCATGTTTTATTT+TGG - chr7_1:76760385-76760404 Msa1039510:three_prime_UTR 25.0%
! GAAAATTGATTGATCAGAAA+TGG - chr7_1:76760539-76760558 Msa1039510:exon 25.0%
! TTTACTTCACTTTACTTTAC+TGG + chr7_1:76760798-76760817 None:intergenic 25.0%
! GTAAATGATCTCCTAAATTT+CGG - chr7_1:76760813-76760832 Msa1039510:intron 25.0%
! TAAATGATCTCCTAAATTTC+GGG - chr7_1:76760814-76760833 Msa1039510:intron 25.0%
!! TGCTATATTTTGTCTTTTTG+TGG - chr7_1:76760839-76760858 Msa1039510:intron 25.0%
!! TATTTTGTCTTTTTGTGGAA+TGG - chr7_1:76760844-76760863 Msa1039510:intron 25.0%
!!! GTGCTATTTTATTAATTGTG+TGG - chr7_1:76761100-76761119 Msa1039510:intron 25.0%
!! CTGAATAATAACCTATTTCT+TGG - chr7_1:76761881-76761900 Msa1039510:intron 25.0%
!!! CATATTGAATAATTTTGGGT+GGG + chr7_1:76762057-76762076 None:intergenic 25.0%
! TTATATACGAGAAATTAAGG+TGG + chr7_1:76760117-76760136 None:intergenic 25.0%
!!! AATTTTAGCGATAACCTTTT+TGG + chr7_1:76760172-76760191 None:intergenic 25.0%
! CAATTCGATATTCAATTTGA+AGG + chr7_1:76760258-76760277 None:intergenic 25.0%
!! AAGCTTGAAGTTTGAAATTA+TGG - chr7_1:76760316-76760335 Msa1039510:three_prime_UTR 25.0%
!!! AGTTCTTGCATGTTTTATTT+TGG - chr7_1:76760385-76760404 Msa1039510:three_prime_UTR 25.0%
! GAAAATTGATTGATCAGAAA+TGG - chr7_1:76760539-76760558 Msa1039510:exon 25.0%
! TTTACTTCACTTTACTTTAC+TGG + chr7_1:76760798-76760817 None:intergenic 25.0%
! GTAAATGATCTCCTAAATTT+CGG - chr7_1:76760813-76760832 Msa1039510:intron 25.0%
! TAAATGATCTCCTAAATTTC+GGG - chr7_1:76760814-76760833 Msa1039510:intron 25.0%
!! TGCTATATTTTGTCTTTTTG+TGG - chr7_1:76760839-76760858 Msa1039510:intron 25.0%
!! TATTTTGTCTTTTTGTGGAA+TGG - chr7_1:76760844-76760863 Msa1039510:intron 25.0%
!!! GTGCTATTTTATTAATTGTG+TGG - chr7_1:76761100-76761119 Msa1039510:intron 25.0%
!! CTGAATAATAACCTATTTCT+TGG - chr7_1:76761881-76761900 Msa1039510:intron 25.0%
!!! CATATTGAATAATTTTGGGT+GGG + chr7_1:76762057-76762076 None:intergenic 25.0%
TGAATATCGAATTGTGTTCT+AGG - chr7_1:76760264-76760283 Msa1039510:three_prime_UTR 30.0%
AATTGATTGATCAGAAATGG+AGG - chr7_1:76760542-76760561 Msa1039510:exon 30.0%
! AGTTTTACTGTCAAGAAACA+CGG + chr7_1:76760753-76760772 None:intergenic 30.0%
!!! CACTTTACTTTACTGGTTTT+TGG + chr7_1:76760791-76760810 None:intergenic 30.0%
AACTCAACCCAAGTTAAAAT+AGG - chr7_1:76761184-76761203 Msa1039510:intron 30.0%
!!! CTAGTTGCCTATTTTAACTT+GGG + chr7_1:76761194-76761213 None:intergenic 30.0%
GTTTATTTGTGTGCATGTAT+CGG - chr7_1:76761604-76761623 Msa1039510:intron 30.0%
TTGTAAGTAAAGAAGTCCAA+AGG - chr7_1:76761770-76761789 Msa1039510:intron 30.0%
TGTAAGTAAAGAAGTCCAAA+GGG - chr7_1:76761771-76761790 Msa1039510:intron 30.0%
TGTGTATATAGATCCTTTAC+TGG - chr7_1:76761823-76761842 Msa1039510:intron 30.0%
GTGTATATAGATCCTTTACT+GGG - chr7_1:76761824-76761843 Msa1039510:intron 30.0%
! TCTATATTCTCGATCCATTT+TGG - chr7_1:76761934-76761953 Msa1039510:intron 30.0%
TCAATATCCTCATACCAAAA+TGG + chr7_1:76761951-76761970 None:intergenic 30.0%
! TGGAACATTTTTGTCTTCAT+GGG - chr7_1:76761990-76762009 Msa1039510:intron 30.0%
! GCATATTGAATAATTTTGGG+TGG + chr7_1:76762058-76762077 None:intergenic 30.0%
AGTGAACAATGGAACAATAA+TGG - chr7_1:76762114-76762133 Msa1039510:five_prime_UTR 30.0%
!! AACAATAATGGACATGAAGA+AGG - chr7_1:76762126-76762145 Msa1039510:five_prime_UTR 30.0%
TGAATATCGAATTGTGTTCT+AGG - chr7_1:76760264-76760283 Msa1039510:three_prime_UTR 30.0%
AATTGATTGATCAGAAATGG+AGG - chr7_1:76760542-76760561 Msa1039510:exon 30.0%
! AGTTTTACTGTCAAGAAACA+CGG + chr7_1:76760753-76760772 None:intergenic 30.0%
!!! CACTTTACTTTACTGGTTTT+TGG + chr7_1:76760791-76760810 None:intergenic 30.0%
AACTCAACCCAAGTTAAAAT+AGG - chr7_1:76761184-76761203 Msa1039510:intron 30.0%
!!! CTAGTTGCCTATTTTAACTT+GGG + chr7_1:76761194-76761213 None:intergenic 30.0%
GTTTATTTGTGTGCATGTAT+CGG - chr7_1:76761604-76761623 Msa1039510:intron 30.0%
TTGTAAGTAAAGAAGTCCAA+AGG - chr7_1:76761770-76761789 Msa1039510:intron 30.0%
TGTAAGTAAAGAAGTCCAAA+GGG - chr7_1:76761771-76761790 Msa1039510:intron 30.0%
TGTGTATATAGATCCTTTAC+TGG - chr7_1:76761823-76761842 Msa1039510:intron 30.0%
GTGTATATAGATCCTTTACT+GGG - chr7_1:76761824-76761843 Msa1039510:intron 30.0%
! TCTATATTCTCGATCCATTT+TGG - chr7_1:76761934-76761953 Msa1039510:intron 30.0%
TCAATATCCTCATACCAAAA+TGG + chr7_1:76761951-76761970 None:intergenic 30.0%
! TGGAACATTTTTGTCTTCAT+GGG - chr7_1:76761990-76762009 Msa1039510:intron 30.0%
! GCATATTGAATAATTTTGGG+TGG + chr7_1:76762058-76762077 None:intergenic 30.0%
AGTGAACAATGGAACAATAA+TGG - chr7_1:76762114-76762133 Msa1039510:five_prime_UTR 30.0%
!! AACAATAATGGACATGAAGA+AGG - chr7_1:76762126-76762145 Msa1039510:five_prime_UTR 30.0%
AAATACGCCTGATCCATTTA+TGG - chr7_1:76759962-76759981 Msa1039510:three_prime_UTR 35.0%
AATACGCCTGATCCATTTAT+GGG - chr7_1:76759963-76759982 Msa1039510:three_prime_UTR 35.0%
GTGAATAATAACGACCTTAC+CGG + chr7_1:76760715-76760734 None:intergenic 35.0%
! GTTTTACTGTCAAGAAACAC+GGG + chr7_1:76760752-76760771 None:intergenic 35.0%
!!! ACTTTACTGGTTTTTGGAAC+AGG + chr7_1:76760785-76760804 None:intergenic 35.0%
ATATAGCATGCCCGAAATTT+AGG + chr7_1:76760827-76760846 None:intergenic 35.0%
TAAATCAGTCGCTCTAATTG+AGG - chr7_1:76761024-76761043 Msa1039510:intron 35.0%
!!! CCTAGTTGCCTATTTTAACT+TGG + chr7_1:76761195-76761214 None:intergenic 35.0%
CCAAGTTAAAATAGGCAACT+AGG - chr7_1:76761192-76761211 Msa1039510:intron 35.0%
TTTCCGGAGAAGATAAAATG+CGG + chr7_1:76761537-76761556 None:intergenic 35.0%
TATTACAGCAAAGGCCAAAA+GGG + chr7_1:76761573-76761592 None:intergenic 35.0%
TTATTACAGCAAAGGCCAAA+AGG + chr7_1:76761574-76761593 None:intergenic 35.0%
!! TGAATTGAAGTTTTGTGCTG+CGG - chr7_1:76761641-76761660 Msa1039510:intron 35.0%
!!! AAGTCCAAGAAGTGTTTTTG+TGG - chr7_1:76761970-76761989 Msa1039510:intron 35.0%
TGTTCCACAAAAACACTTCT+TGG + chr7_1:76761977-76761996 None:intergenic 35.0%
! GTGGAACATTTTTGTCTTCA+TGG - chr7_1:76761989-76762008 Msa1039510:intron 35.0%
! ACATTTTTGTCTTCATGGGA+TGG - chr7_1:76761994-76762013 Msa1039510:CDS 35.0%
AAATACGCCTGATCCATTTA+TGG - chr7_1:76759962-76759981 Msa1039510:three_prime_UTR 35.0%
AATACGCCTGATCCATTTAT+GGG - chr7_1:76759963-76759982 Msa1039510:three_prime_UTR 35.0%
GTGAATAATAACGACCTTAC+CGG + chr7_1:76760715-76760734 None:intergenic 35.0%
! GTTTTACTGTCAAGAAACAC+GGG + chr7_1:76760752-76760771 None:intergenic 35.0%
!!! ACTTTACTGGTTTTTGGAAC+AGG + chr7_1:76760785-76760804 None:intergenic 35.0%
ATATAGCATGCCCGAAATTT+AGG + chr7_1:76760827-76760846 None:intergenic 35.0%
TAAATCAGTCGCTCTAATTG+AGG - chr7_1:76761024-76761043 Msa1039510:intron 35.0%
!!! CCTAGTTGCCTATTTTAACT+TGG + chr7_1:76761195-76761214 None:intergenic 35.0%
CCAAGTTAAAATAGGCAACT+AGG - chr7_1:76761192-76761211 Msa1039510:intron 35.0%
TTTCCGGAGAAGATAAAATG+CGG + chr7_1:76761537-76761556 None:intergenic 35.0%
TATTACAGCAAAGGCCAAAA+GGG + chr7_1:76761573-76761592 None:intergenic 35.0%
TTATTACAGCAAAGGCCAAA+AGG + chr7_1:76761574-76761593 None:intergenic 35.0%
!! TGAATTGAAGTTTTGTGCTG+CGG - chr7_1:76761641-76761660 Msa1039510:intron 35.0%
!!! AAGTCCAAGAAGTGTTTTTG+TGG - chr7_1:76761970-76761989 Msa1039510:intron 35.0%
TGTTCCACAAAAACACTTCT+TGG + chr7_1:76761977-76761996 None:intergenic 35.0%
! GTGGAACATTTTTGTCTTCA+TGG - chr7_1:76761989-76762008 Msa1039510:intron 35.0%
! ACATTTTTGTCTTCATGGGA+TGG - chr7_1:76761994-76762013 Msa1039510:CDS 35.0%
ACGAATCACCAGAACCAAAA+AGG - chr7_1:76760155-76760174 Msa1039510:three_prime_UTR 40.0%
!!! AGCGATAACCTTTTTGGTTC+TGG + chr7_1:76760166-76760185 None:intergenic 40.0%
! TCTTTGAGCTTTTCACATGC+AGG + chr7_1:76760422-76760441 None:intergenic 40.0%
TGATTGATCAGAAATGGAGG+CGG - chr7_1:76760545-76760564 Msa1039510:exon 40.0%
ATAACGACCTTACCGGAAAA+CGG + chr7_1:76760708-76760727 None:intergenic 40.0%
!! GTAAGTTGATACGAGACTTG+TGG + chr7_1:76760954-76760973 None:intergenic 40.0%
GTCTCGTATCAACTTACAAG+CGG - chr7_1:76760957-76760976 Msa1039510:intron 40.0%
TTAAAACCCACACTCTTCCA+AGG + chr7_1:76761062-76761081 None:intergenic 40.0%
GGCAACTAGGTTAAGTTACT+TGG - chr7_1:76761205-76761224 Msa1039510:intron 40.0%
!! GCGATGCGTGTTTATTTTTC+AGG - chr7_1:76761400-76761419 Msa1039510:CDS 40.0%
CAGGAACTAGAGATTCCTTT+CGG - chr7_1:76761419-76761438 Msa1039510:CDS 40.0%
AAGAAAGGCCAAAACAGATC+AGG - chr7_1:76761475-76761494 Msa1039510:CDS 40.0%
ACACATCGATAGGAGAAGAA+GGG + chr7_1:76761501-76761520 None:intergenic 40.0%
CTCATTTCTCACACATCGAT+AGG + chr7_1:76761511-76761530 None:intergenic 40.0%
TTTATCTTCTCCGGAAACTG+AGG - chr7_1:76761540-76761559 Msa1039510:intron 40.0%
ATTACAGCAAAGGCCAAAAG+GGG + chr7_1:76761572-76761591 None:intergenic 40.0%
! CATGTATCGGTGTAATGCAT+TGG - chr7_1:76761617-76761636 Msa1039510:intron 40.0%
AGTAAAGAAGTCCAAAGGGT+AGG - chr7_1:76761775-76761794 Msa1039510:intron 40.0%
GAAAAACAACAGCCCAGTAA+AGG + chr7_1:76761839-76761858 None:intergenic 40.0%
ACGAGAGATTGCCAAGAAAT+AGG + chr7_1:76761895-76761914 None:intergenic 40.0%
ATGGATCGAGAATATAGAGC+AGG + chr7_1:76761932-76761951 None:intergenic 40.0%
!! TCTCGATCCATTTTGGTATG+AGG - chr7_1:76761941-76761960 Msa1039510:intron 40.0%
!! TTGAATAATTTTGGGTGGGC+CGG + chr7_1:76762053-76762072 None:intergenic 40.0%
TCAATATGCATGTCGGAAGA+TGG - chr7_1:76762069-76762088 Msa1039510:CDS 40.0%
CAATATGCATGTCGGAAGAT+GGG - chr7_1:76762070-76762089 Msa1039510:CDS 40.0%
CGCATTCAATCAGTGAACAA+TGG - chr7_1:76762103-76762122 Msa1039510:exon 40.0%
ACGAATCACCAGAACCAAAA+AGG - chr7_1:76760155-76760174 Msa1039510:three_prime_UTR 40.0%
!!! AGCGATAACCTTTTTGGTTC+TGG + chr7_1:76760166-76760185 None:intergenic 40.0%
! TCTTTGAGCTTTTCACATGC+AGG + chr7_1:76760422-76760441 None:intergenic 40.0%
TGATTGATCAGAAATGGAGG+CGG - chr7_1:76760545-76760564 Msa1039510:exon 40.0%
ATAACGACCTTACCGGAAAA+CGG + chr7_1:76760708-76760727 None:intergenic 40.0%
!! GTAAGTTGATACGAGACTTG+TGG + chr7_1:76760954-76760973 None:intergenic 40.0%
GTCTCGTATCAACTTACAAG+CGG - chr7_1:76760957-76760976 Msa1039510:intron 40.0%
TTAAAACCCACACTCTTCCA+AGG + chr7_1:76761062-76761081 None:intergenic 40.0%
GGCAACTAGGTTAAGTTACT+TGG - chr7_1:76761205-76761224 Msa1039510:intron 40.0%
!! GCGATGCGTGTTTATTTTTC+AGG - chr7_1:76761400-76761419 Msa1039510:CDS 40.0%
CAGGAACTAGAGATTCCTTT+CGG - chr7_1:76761419-76761438 Msa1039510:CDS 40.0%
AAGAAAGGCCAAAACAGATC+AGG - chr7_1:76761475-76761494 Msa1039510:CDS 40.0%
ACACATCGATAGGAGAAGAA+GGG + chr7_1:76761501-76761520 None:intergenic 40.0%
CTCATTTCTCACACATCGAT+AGG + chr7_1:76761511-76761530 None:intergenic 40.0%
TTTATCTTCTCCGGAAACTG+AGG - chr7_1:76761540-76761559 Msa1039510:intron 40.0%
ATTACAGCAAAGGCCAAAAG+GGG + chr7_1:76761572-76761591 None:intergenic 40.0%
! CATGTATCGGTGTAATGCAT+TGG - chr7_1:76761617-76761636 Msa1039510:intron 40.0%
AGTAAAGAAGTCCAAAGGGT+AGG - chr7_1:76761775-76761794 Msa1039510:intron 40.0%
GAAAAACAACAGCCCAGTAA+AGG + chr7_1:76761839-76761858 None:intergenic 40.0%
ACGAGAGATTGCCAAGAAAT+AGG + chr7_1:76761895-76761914 None:intergenic 40.0%
ATGGATCGAGAATATAGAGC+AGG + chr7_1:76761932-76761951 None:intergenic 40.0%
!! TCTCGATCCATTTTGGTATG+AGG - chr7_1:76761941-76761960 Msa1039510:intron 40.0%
!! TTGAATAATTTTGGGTGGGC+CGG + chr7_1:76762053-76762072 None:intergenic 40.0%
TCAATATGCATGTCGGAAGA+TGG - chr7_1:76762069-76762088 Msa1039510:CDS 40.0%
CAATATGCATGTCGGAAGAT+GGG - chr7_1:76762070-76762089 Msa1039510:CDS 40.0%
CGCATTCAATCAGTGAACAA+TGG - chr7_1:76762103-76762122 Msa1039510:exon 40.0%
CGCAGTAGTATCTCTTACAC+CGG - chr7_1:76759900-76759919 Msa1039510:three_prime_UTR 45.0%
GTATCTCTTACACCGGAATC+TGG - chr7_1:76759907-76759926 Msa1039510:three_prime_UTR 45.0%
TTACACCGGAATCTGGTCAT+TGG - chr7_1:76759914-76759933 Msa1039510:three_prime_UTR 45.0%
TACACCGGAATCTGGTCATT+GGG - chr7_1:76759915-76759934 Msa1039510:three_prime_UTR 45.0%
!!! CAGGCGTATTTTAGCAGATG+CGG + chr7_1:76759953-76759972 None:intergenic 45.0%
AGAAGGCCCATAAATGGATC+AGG + chr7_1:76759972-76759991 None:intergenic 45.0%
ATTAAGGTGGCAGAGTACAG+CGG + chr7_1:76760104-76760123 None:intergenic 45.0%
GATTGATCAGAAATGGAGGC+GGG - chr7_1:76760546-76760565 Msa1039510:exon 45.0%
!!! GGAAGAGTGTGGGTTTTAAG+CGG - chr7_1:76761063-76761082 Msa1039510:intron 45.0%
ATTCCTTTCGGTTTCGACGA+AGG - chr7_1:76761431-76761450 Msa1039510:CDS 45.0%
TCGGATGCATACGAGAAGAA+AGG - chr7_1:76761460-76761479 Msa1039510:CDS 45.0%
! AAGAAGGGCCTGATCTGTTT+TGG + chr7_1:76761486-76761505 None:intergenic 45.0%
CACACATCGATAGGAGAAGA+AGG + chr7_1:76761502-76761521 None:intergenic 45.0%
! CCACCGCATTTTATCTTCTC+CGG - chr7_1:76761531-76761550 Msa1039510:intron 45.0%
! ACTGAGGATGTTACCCCTTT+TGG - chr7_1:76761556-76761575 Msa1039510:intron 45.0%
AAGTCCAAAGGGTAGGATAG+CGG - chr7_1:76761782-76761801 Msa1039510:intron 45.0%
!! ACGCTTGATAATGAGACAGC+CGG - chr7_1:76762031-76762050 Msa1039510:CDS 45.0%
CGCAGTAGTATCTCTTACAC+CGG - chr7_1:76759900-76759919 Msa1039510:three_prime_UTR 45.0%
GTATCTCTTACACCGGAATC+TGG - chr7_1:76759907-76759926 Msa1039510:three_prime_UTR 45.0%
TTACACCGGAATCTGGTCAT+TGG - chr7_1:76759914-76759933 Msa1039510:three_prime_UTR 45.0%
TACACCGGAATCTGGTCATT+GGG - chr7_1:76759915-76759934 Msa1039510:three_prime_UTR 45.0%
!!! CAGGCGTATTTTAGCAGATG+CGG + chr7_1:76759953-76759972 None:intergenic 45.0%
AGAAGGCCCATAAATGGATC+AGG + chr7_1:76759972-76759991 None:intergenic 45.0%
ATTAAGGTGGCAGAGTACAG+CGG + chr7_1:76760104-76760123 None:intergenic 45.0%
GATTGATCAGAAATGGAGGC+GGG - chr7_1:76760546-76760565 Msa1039510:exon 45.0%
!!! GGAAGAGTGTGGGTTTTAAG+CGG - chr7_1:76761063-76761082 Msa1039510:intron 45.0%
ATTCCTTTCGGTTTCGACGA+AGG - chr7_1:76761431-76761450 Msa1039510:CDS 45.0%
TCGGATGCATACGAGAAGAA+AGG - chr7_1:76761460-76761479 Msa1039510:CDS 45.0%
! AAGAAGGGCCTGATCTGTTT+TGG + chr7_1:76761486-76761505 None:intergenic 45.0%
CACACATCGATAGGAGAAGA+AGG + chr7_1:76761502-76761521 None:intergenic 45.0%
! CCACCGCATTTTATCTTCTC+CGG - chr7_1:76761531-76761550 Msa1039510:intron 45.0%
! ACTGAGGATGTTACCCCTTT+TGG - chr7_1:76761556-76761575 Msa1039510:intron 45.0%
AAGTCCAAAGGGTAGGATAG+CGG - chr7_1:76761782-76761801 Msa1039510:intron 45.0%
!! ACGCTTGATAATGAGACAGC+CGG - chr7_1:76762031-76762050 Msa1039510:CDS 45.0%
!! AATAATTAATATTAATAAGT+TGG - chr7_1:76760921-76760940 Msa1039510:intron 5.0%
!! AATAATTAATATTAATAAGT+TGG - chr7_1:76760921-76760940 Msa1039510:intron 5.0%
CGATCCCAATGACCAGATTC+CGG + chr7_1:76759922-76759941 None:intergenic 50.0%
TGGTCGAGAAGGCCCATAAA+TGG + chr7_1:76759978-76759997 None:intergenic 50.0%
TACCCTTGCCAGAGCTAGAT+CGG + chr7_1:76760079-76760098 None:intergenic 50.0%
ATCGTACGGTGAGGAATCGT+CGG - chr7_1:76760578-76760597 Msa1039510:CDS 50.0%
ATCATGATCGTGAAACCGCC+AGG - chr7_1:76760627-76760646 Msa1039510:CDS 50.0%
TCATGATCGTGAAACCGCCA+GGG - chr7_1:76760628-76760647 Msa1039510:CDS 50.0%
AGACACCGGAGTAGTAGAAC+CGG + chr7_1:76760685-76760704 None:intergenic 50.0%
TTACCGGAAAACGGAGACAC+CGG + chr7_1:76760699-76760718 None:intergenic 50.0%
TGAGGTTTGAACCTCGACCT+TGG - chr7_1:76761042-76761061 Msa1039510:intron 50.0%
CTTTCGGTTTCGACGAAGGT+CGG - chr7_1:76761435-76761454 Msa1039510:CDS 50.0%
CCGGAGAAGATAAAATGCGG+TGG + chr7_1:76761534-76761553 None:intergenic 50.0%
GGGGTAACATCCTCAGTTTC+CGG + chr7_1:76761553-76761572 None:intergenic 50.0%
TTTGTGCTGCGGTTCACGTT+AGG - chr7_1:76761652-76761671 Msa1039510:intron 50.0%
TACACCGCTATCCTACCCTT+TGG + chr7_1:76761789-76761808 None:intergenic 50.0%
TCTTCATGGGATGGCTACAG+AGG - chr7_1:76762003-76762022 Msa1039510:CDS 50.0%
CGATCCCAATGACCAGATTC+CGG + chr7_1:76759922-76759941 None:intergenic 50.0%
TGGTCGAGAAGGCCCATAAA+TGG + chr7_1:76759978-76759997 None:intergenic 50.0%
TACCCTTGCCAGAGCTAGAT+CGG + chr7_1:76760079-76760098 None:intergenic 50.0%
ATCGTACGGTGAGGAATCGT+CGG - chr7_1:76760578-76760597 Msa1039510:CDS 50.0%
ATCATGATCGTGAAACCGCC+AGG - chr7_1:76760627-76760646 Msa1039510:CDS 50.0%
TCATGATCGTGAAACCGCCA+GGG - chr7_1:76760628-76760647 Msa1039510:CDS 50.0%
AGACACCGGAGTAGTAGAAC+CGG + chr7_1:76760685-76760704 None:intergenic 50.0%
TTACCGGAAAACGGAGACAC+CGG + chr7_1:76760699-76760718 None:intergenic 50.0%
TGAGGTTTGAACCTCGACCT+TGG - chr7_1:76761042-76761061 Msa1039510:intron 50.0%
CTTTCGGTTTCGACGAAGGT+CGG - chr7_1:76761435-76761454 Msa1039510:CDS 50.0%
CCGGAGAAGATAAAATGCGG+TGG + chr7_1:76761534-76761553 None:intergenic 50.0%
GGGGTAACATCCTCAGTTTC+CGG + chr7_1:76761553-76761572 None:intergenic 50.0%
TTTGTGCTGCGGTTCACGTT+AGG - chr7_1:76761652-76761671 Msa1039510:intron 50.0%
TACACCGCTATCCTACCCTT+TGG + chr7_1:76761789-76761808 None:intergenic 50.0%
TCTTCATGGGATGGCTACAG+AGG - chr7_1:76762003-76762022 Msa1039510:CDS 50.0%
AGAACGGTCTCGGCAAGCTT+CGG - chr7_1:76760033-76760052 Msa1039510:three_prime_UTR 55.0%
ACCCTTGCCAGAGCTAGATC+GGG + chr7_1:76760078-76760097 None:intergenic 55.0%
AAGCGTGAGATCGTACGGTG+AGG - chr7_1:76760569-76760588 Msa1039510:CDS 55.0%
AAACCGCCAGGGTACGAAAG+TGG - chr7_1:76760639-76760658 Msa1039510:CDS 55.0%
GATCCACTTTCGTACCCTGG+CGG + chr7_1:76760645-76760664 None:intergenic 55.0%
GTACGAAAGTGGATCGCCTC+TGG - chr7_1:76760650-76760669 Msa1039510:intron 55.0%
! ACTCCGGTGTCTCCGTTTTC+CGG - chr7_1:76760693-76760712 Msa1039510:intron 55.0%
! GGTGTCTCCGTTTTCCGGTA+AGG - chr7_1:76760698-76760717 Msa1039510:intron 55.0%
ACCTCGACCTTGGAAGAGTG+TGG - chr7_1:76761052-76761071 Msa1039510:intron 55.0%
! CCTCGACCTTGGAAGAGTGT+GGG - chr7_1:76761053-76761072 Msa1039510:intron 55.0%
CGACCTTCGTCGAAACCGAA+AGG + chr7_1:76761437-76761456 None:intergenic 55.0%
GTTTCGACGAAGGTCGGCAT+CGG - chr7_1:76761441-76761460 Msa1039510:CDS 55.0%
GTTAGGCATGGCGCTCTGTT+TGG - chr7_1:76761669-76761688 Msa1039510:intron 55.0%
AGAACGGTCTCGGCAAGCTT+CGG - chr7_1:76760033-76760052 Msa1039510:three_prime_UTR 55.0%
ACCCTTGCCAGAGCTAGATC+GGG + chr7_1:76760078-76760097 None:intergenic 55.0%
AAGCGTGAGATCGTACGGTG+AGG - chr7_1:76760569-76760588 Msa1039510:CDS 55.0%
AAACCGCCAGGGTACGAAAG+TGG - chr7_1:76760639-76760658 Msa1039510:CDS 55.0%
GATCCACTTTCGTACCCTGG+CGG + chr7_1:76760645-76760664 None:intergenic 55.0%
GTACGAAAGTGGATCGCCTC+TGG - chr7_1:76760650-76760669 Msa1039510:intron 55.0%
! ACTCCGGTGTCTCCGTTTTC+CGG - chr7_1:76760693-76760712 Msa1039510:intron 55.0%
! GGTGTCTCCGTTTTCCGGTA+AGG - chr7_1:76760698-76760717 Msa1039510:intron 55.0%
ACCTCGACCTTGGAAGAGTG+TGG - chr7_1:76761052-76761071 Msa1039510:intron 55.0%
! CCTCGACCTTGGAAGAGTGT+GGG - chr7_1:76761053-76761072 Msa1039510:intron 55.0%
CGACCTTCGTCGAAACCGAA+AGG + chr7_1:76761437-76761456 None:intergenic 55.0%
GTTTCGACGAAGGTCGGCAT+CGG - chr7_1:76761441-76761460 Msa1039510:CDS 55.0%
GTTAGGCATGGCGCTCTGTT+TGG - chr7_1:76761669-76761688 Msa1039510:intron 55.0%
TGGGCCTTCTCGACCAGTTG+TGG - chr7_1:76759982-76760001 Msa1039510:three_prime_UTR 60.0%
GGGCCTTCTCGACCAGTTGT+GGG - chr7_1:76759983-76760002 Msa1039510:three_prime_UTR 60.0%
CGTCCCACAACTGGTCGAGA+AGG + chr7_1:76759989-76760008 None:intergenic 60.0%
AGCTTGCCGAGACCGTTCTC+CGG + chr7_1:76760032-76760051 None:intergenic 60.0%
CTTGCCAGAGCTAGATCGGG+CGG + chr7_1:76760075-76760094 None:intergenic 60.0%
!! GCCCGATCTAGCTCTGGCAA+GGG - chr7_1:76760074-76760093 Msa1039510:three_prime_UTR 60.0%
! GCGGGAAGCGTGAGATCGTA+CGG - chr7_1:76760564-76760583 Msa1039510:CDS 60.0%
GGCGATCCACTTTCGTACCC+TGG + chr7_1:76760648-76760667 None:intergenic 60.0%
!! TCCCGCCGGTTCTACTACTC+CGG - chr7_1:76760677-76760696 Msa1039510:intron 60.0%
ACCGGAGTAGTAGAACCGGC+GGG + chr7_1:76760681-76760700 None:intergenic 60.0%
CACCGGAGTAGTAGAACCGG+CGG + chr7_1:76760682-76760701 None:intergenic 60.0%
CCCACACTCTTCCAAGGTCG+AGG + chr7_1:76761056-76761075 None:intergenic 60.0%
GCTGCGGTTCACGTTAGGCA+TGG - chr7_1:76761657-76761676 Msa1039510:intron 60.0%
TGGGCCTTCTCGACCAGTTG+TGG - chr7_1:76759982-76760001 Msa1039510:three_prime_UTR 60.0%
GGGCCTTCTCGACCAGTTGT+GGG - chr7_1:76759983-76760002 Msa1039510:three_prime_UTR 60.0%
CGTCCCACAACTGGTCGAGA+AGG + chr7_1:76759989-76760008 None:intergenic 60.0%
AGCTTGCCGAGACCGTTCTC+CGG + chr7_1:76760032-76760051 None:intergenic 60.0%
CTTGCCAGAGCTAGATCGGG+CGG + chr7_1:76760075-76760094 None:intergenic 60.0%
!! GCCCGATCTAGCTCTGGCAA+GGG - chr7_1:76760074-76760093 Msa1039510:three_prime_UTR 60.0%
! GCGGGAAGCGTGAGATCGTA+CGG - chr7_1:76760564-76760583 Msa1039510:CDS 60.0%
GGCGATCCACTTTCGTACCC+TGG + chr7_1:76760648-76760667 None:intergenic 60.0%
!! TCCCGCCGGTTCTACTACTC+CGG - chr7_1:76760677-76760696 Msa1039510:intron 60.0%
ACCGGAGTAGTAGAACCGGC+GGG + chr7_1:76760681-76760700 None:intergenic 60.0%
CACCGGAGTAGTAGAACCGG+CGG + chr7_1:76760682-76760701 None:intergenic 60.0%
CCCACACTCTTCCAAGGTCG+AGG + chr7_1:76761056-76761075 None:intergenic 60.0%
GCTGCGGTTCACGTTAGGCA+TGG - chr7_1:76761657-76761676 Msa1039510:intron 60.0%
!! CGACGGTGTCGTCCCACAAC+TGG + chr7_1:76759998-76760017 None:intergenic 65.0%
TTGTGGGACGACACCGTCGC+CGG - chr7_1:76759999-76760018 Msa1039510:three_prime_UTR 65.0%
AGAGCTAGATCGGGCGGCGA+AGG + chr7_1:76760069-76760088 None:intergenic 65.0%
! TTCGCCGCCCGATCTAGCTC+TGG - chr7_1:76760068-76760087 Msa1039510:three_prime_UTR 65.0%
!! CGCCCGATCTAGCTCTGGCA+AGG - chr7_1:76760073-76760092 Msa1039510:three_prime_UTR 65.0%
!! CGACGGTGTCGTCCCACAAC+TGG + chr7_1:76759998-76760017 None:intergenic 65.0%
TTGTGGGACGACACCGTCGC+CGG - chr7_1:76759999-76760018 Msa1039510:three_prime_UTR 65.0%
AGAGCTAGATCGGGCGGCGA+AGG + chr7_1:76760069-76760088 None:intergenic 65.0%
! TTCGCCGCCCGATCTAGCTC+TGG - chr7_1:76760068-76760087 Msa1039510:three_prime_UTR 65.0%
!! CGCCCGATCTAGCTCTGGCA+AGG - chr7_1:76760073-76760092 Msa1039510:three_prime_UTR 65.0%
CGAGACCGTTCTCCGGCCGA+GGG + chr7_1:76760025-76760044 None:intergenic 70.0%
CCTCGGCCGGAGAACGGTCT+CGG - chr7_1:76760023-76760042 Msa1039510:three_prime_UTR 70.0%
! TCGCCTCTGGCTTCTCCCGC+CGG - chr7_1:76760663-76760682 Msa1039510:intron 70.0%
GAACCGGCGGGAGAAGCCAG+AGG + chr7_1:76760669-76760688 None:intergenic 70.0%
CGAGACCGTTCTCCGGCCGA+GGG + chr7_1:76760025-76760044 None:intergenic 70.0%
CCTCGGCCGGAGAACGGTCT+CGG - chr7_1:76760023-76760042 Msa1039510:three_prime_UTR 70.0%
! TCGCCTCTGGCTTCTCCCGC+CGG - chr7_1:76760663-76760682 Msa1039510:intron 70.0%
GAACCGGCGGGAGAAGCCAG+AGG + chr7_1:76760669-76760688 None:intergenic 70.0%
ACGACACCGTCGCCGGCCCT+CGG - chr7_1:76760006-76760025 Msa1039510:three_prime_UTR 75.0%
ACCGTTCTCCGGCCGAGGGC+CGG + chr7_1:76760021-76760040 None:intergenic 75.0%
CCGAGACCGTTCTCCGGCCG+AGG + chr7_1:76760026-76760045 None:intergenic 75.0%
ACGACACCGTCGCCGGCCCT+CGG - chr7_1:76760006-76760025 Msa1039510:three_prime_UTR 75.0%
ACCGTTCTCCGGCCGAGGGC+CGG + chr7_1:76760021-76760040 None:intergenic 75.0%
CCGAGACCGTTCTCCGGCCG+AGG + chr7_1:76760026-76760045 None:intergenic 75.0%
! GCCGGCCCTCGGCCGGAGAA+CGG - chr7_1:76760017-76760036 Msa1039510:three_prime_UTR 80.0%
! GCCGGCCCTCGGCCGGAGAA+CGG - chr7_1:76760017-76760036 Msa1039510:three_prime_UTR 80.0%
! CACCGTCGCCGGCCCTCGGC+CGG - chr7_1:76760010-76760029 Msa1039510:three_prime_UTR 85.0%
! CTCCGGCCGAGGGCCGGCGA+CGG + chr7_1:76760015-76760034 None:intergenic 85.0%
! CACCGTCGCCGGCCCTCGGC+CGG - chr7_1:76760010-76760029 Msa1039510:three_prime_UTR 85.0%
! CTCCGGCCGAGGGCCGGCGA+CGG + chr7_1:76760015-76760034 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 76759894 76762192 76759894 ID=Msa1039510;Name=Msa1039510
chr7_1 mRNA 76759894 76762192 76759894 ID=Msa1039510-mRNA-1;Parent=Msa1039510;Name=Msa1039510-mRNA-1;_AED=0.03;_eAED=0.03;_QI=87|0.5|0.66|1|0|0.33|3|663|128
chr7_1 exon 76759894 76760664 76759894 ID=Msa1039510-mRNA-1:exon:19965;Parent=Msa1039510-mRNA-1
chr7_1 exon 76761367 76761530 76761367 ID=Msa1039510-mRNA-1:exon:19964;Parent=Msa1039510-mRNA-1
chr7_1 exon 76761991 76762192 76761991 ID=Msa1039510-mRNA-1:exon:19963;Parent=Msa1039510-mRNA-1
chr7_1 five_prime_UTR 76762106 76762192 76762106 ID=Msa1039510-mRNA-1:five_prime_utr;Parent=Msa1039510-mRNA-1
chr7_1 CDS 76761991 76762105 76761991 ID=Msa1039510-mRNA-1:cds;Parent=Msa1039510-mRNA-1
chr7_1 CDS 76761367 76761530 76761367 ID=Msa1039510-mRNA-1:cds;Parent=Msa1039510-mRNA-1
chr7_1 CDS 76760557 76760664 76760557 ID=Msa1039510-mRNA-1:cds;Parent=Msa1039510-mRNA-1
chr7_1 three_prime_UTR 76759894 76760556 76759894 ID=Msa1039510-mRNA-1:three_prime_utr;Parent=Msa1039510-mRNA-1
Gene Sequence

>Msa1039510

ATGGGCCTTCTCGACCAGTTGTGGGACGACACCGTCGCCGGCCCTCGGCCGGAGAACGGTCTCGGCAAGCTTCGGAAGCAAAACACCTTCGCCGCCCGATCTAGCTCTGGCAAGGAAATGGAGGCGGGAAGCGTGAGATCGTACGGTGAGGAATCGTCGGAGCAAACGACGAGAGTAACACGTAGCATCATGATCGTGAAACCGCCAGGGTACGAAAGTGGATCGCCTCTGGCTTCTCCCGCCGGTTCTACTACTCCGGTGTCTCCGTTTTCCGGTAAGGAACTAGAGATTCCTTTCGGTTTCGACGAAGGTCGGCATCGGATGCATACGAGAAGAAAGGCCAAAACAGATCAGGCCCTTCTTCTCCTATCGATGTGTGAGAAATGA
Protein sequence

>Msa1039510

MGLLDQLWDDTVAGPRPENGLGKLRKQNTFAARSSSGKEMEAGSVRSYGEESSEQTTRVTRSIMIVKPPGYESGSPLASPAGSTTPVSPFSGKELEIPFGFDEGRHRMHTRRKAKTDQALLLLSMCEK*