AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0377530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377530 MtrunA17_Chr3g0129011 97.203 286 8 0 1 286 1 286 0.0 588
Msa0377530 MtrunA17_Chr1g0197631 45.745 188 95 3 66 247 68 254 5.53e-44 153
Msa0377530 MtrunA17_Chr7g0228091 39.773 176 104 2 72 247 314 487 1.85e-30 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377530 AT3G10940.1 72.348 264 66 3 28 286 21 282 7.92e-141 398
Msa0377530 AT3G52180.3 42.927 205 115 2 65 268 66 269 1.80e-46 157
Msa0377530 AT3G52180.2 42.927 205 115 2 65 268 66 269 3.61e-46 157
Msa0377530 AT3G52180.1 42.927 205 115 2 65 268 66 269 4.86e-45 156
Msa0377530 AT3G52180.4 44.571 175 95 2 95 268 1 174 2.68e-39 139
Msa0377530 AT3G01510.3 35.983 239 144 5 9 247 69 298 2.50e-32 124
Msa0377530 AT3G01510.2 35.983 239 144 5 9 247 69 298 2.50e-32 124
Msa0377530 AT3G01510.1 35.983 239 144 5 9 247 211 440 9.14e-32 124

Find 74 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTATCAATTACTCTATT+AGG 0.200564 3_1:+78077927 Msa0377530:CDS
TCAATACTACATGGAATATT+TGG 0.229020 3_1:-78081075 None:intergenic
TGACAATTGCTTATTTGTTC+TGG 0.251643 3_1:+78079903 Msa0377530:CDS
TTCAACATTCAGAGCTTCTT+TGG 0.262998 3_1:+78077850 Msa0377530:CDS
ATCTAAATCTAATGATTTAA+TGG 0.263330 3_1:+78078015 Msa0377530:CDS
AGTCTTCCAGACCATGCTTT+TGG 0.273596 3_1:+78080731 Msa0377530:CDS
GAATATTTGGTACCAGTTAC+AGG 0.278378 3_1:-78081062 None:intergenic
TCTAAGGATGACACTGCTTT+AGG 0.291760 3_1:-78079809 None:intergenic
TTAAGGTGATCTACATCTTC+AGG 0.294100 3_1:-78079147 None:intergenic
CTCAGAAATTGCCCATTCTA+AGG 0.297875 3_1:-78079825 None:intergenic
CCACACCTTCTTCCTTCTTA+AGG 0.313968 3_1:-78079164 None:intergenic
GATTGACAGGTCAGTGCTTA+TGG 0.313968 3_1:+78080929 Msa0377530:intron
AGGATAAGGATGCTGAGTTT+TGG 0.315172 3_1:+78079208 Msa0377530:CDS
ATCTTCAGGTTTCTGTGGTT+GGG 0.320424 3_1:-78079133 None:intergenic
AGTGCACTTCGCAAAGAGTT+TGG 0.350408 3_1:-78079785 None:intergenic
CATCTTCAGGTTTCTGTGGT+TGG 0.355320 3_1:-78079134 None:intergenic
ACAAGGAGCAACTTATGATT+TGG 0.358184 3_1:+78080676 Msa0377530:CDS
AGAACAGAATTTAGATTCAA+TGG 0.367500 3_1:-78081183 None:intergenic
CTTTGAAGTTAGCATATCAT+AGG 0.392022 3_1:-78080624 None:intergenic
ATAGGTATATTGCCTGTAAC+TGG 0.397078 3_1:+78081050 Msa0377530:three_prime_UTR
ATATTCCATGTAGTATTGAT+TGG 0.399152 3_1:+78081079 Msa0377530:three_prime_UTR
TCTAAACTTGCAACAGGATA+AGG 0.402340 3_1:+78079194 Msa0377530:CDS
GCATATTTATATAGATATAT+AGG 0.402680 3_1:+78081032 Msa0377530:three_prime_UTR
AACCGTGTCCGCGCTCTTCG+TGG 0.426634 3_1:+78080788 Msa0377530:CDS
TTATGAGTATCATCACGATC+TGG 0.441184 3_1:+78078078 Msa0377530:CDS
CAAATAATAAATCAACTTTG+TGG 0.446478 3_1:+78081102 Msa0377530:three_prime_UTR
AGATTTAGATACCCTCTTGC+TGG 0.449666 3_1:-78078002 None:intergenic
ATATATTCTAAACTTGCAAC+AGG 0.450710 3_1:+78079188 Msa0377530:CDS
AGATCGTGATGATACTCATA+AGG 0.451970 3_1:-78078076 None:intergenic
AAGCAGTGTCATCCTTAGAA+TGG 0.458306 3_1:+78079813 Msa0377530:CDS
CTCTCAAATGGCTCCTTCCA+TGG 0.458673 3_1:-78080710 None:intergenic
TTTGTTGTACACTATCAGAA+AGG 0.464043 3_1:+78077960 Msa0377530:CDS
AAATAAGCAATTGTCACTGC+TGG 0.476094 3_1:-78079896 None:intergenic
ATAACTGACAATTTGATTGT+GGG 0.477333 3_1:+78079108 Msa0377530:CDS
TTGTTGTACACTATCAGAAA+GGG 0.479495 3_1:+78077961 Msa0377530:CDS
ATATCCCCAAAAGCATGGTC+TGG 0.485767 3_1:-78080737 None:intergenic
TATAACTGACAATTTGATTG+TGG 0.487738 3_1:+78079107 Msa0377530:CDS
AAATCTACATTCTACAATCA+TGG 0.497529 3_1:-78081133 None:intergenic
TTCGTGGAACCTGACGAATT+AGG 0.502926 3_1:+78080804 Msa0377530:exon
GTTTATGTGCACTGTACTGC+AGG 0.506912 3_1:+78079860 Msa0377530:CDS
GAATTTAGATTCAATGGAAG+AGG 0.507146 3_1:-78081177 None:intergenic
AGCAGTGTCATCCTTAGAAT+GGG 0.512745 3_1:+78079814 Msa0377530:CDS
GGGATATAGCAGATTGGGAG+AGG 0.512919 3_1:+78080753 Msa0377530:CDS
ATGGAAAGTGTAAGTAACAT+TGG 0.515333 3_1:+78077821 Msa0377530:CDS
GATCGTGATGATACTCATAA+GGG 0.517872 3_1:-78078075 None:intergenic
TGGGCAATTTCTGAGGGAAA+AGG 0.518950 3_1:+78079833 Msa0377530:CDS
TGGTCTGGAAGACTCTCAAA+TGG 0.522030 3_1:-78080722 None:intergenic
AGACTAATACCTAATTCGTC+AGG 0.528930 3_1:-78080813 None:intergenic
CTTAGAATGGGCAATTTCTG+AGG 0.532588 3_1:+78079826 Msa0377530:CDS
TCTACATCTTCAGGTTTCTG+TGG 0.534119 3_1:-78079138 None:intergenic
TATGAGTATCATCACGATCT+GGG 0.535409 3_1:+78078079 Msa0377530:CDS
GTGCACTGTACTGCAGGACT+TGG 0.536912 3_1:+78079866 Msa0377530:CDS
ATTTGCCAATCAATACTACA+TGG 0.557524 3_1:-78081084 None:intergenic
GATCACCTTAAGAAGGAAGA+AGG 0.559918 3_1:+78079159 Msa0377530:CDS
AAAAGAACAACAACTTGTGT+AGG 0.570717 3_1:-78080957 None:intergenic
CCAAATAAAAGAGCAATACA+AGG 0.573394 3_1:+78080659 Msa0377530:CDS
TTAGAATGGGCAATTTCTGA+GGG 0.579734 3_1:+78079827 Msa0377530:CDS
TAACTGACAATTTGATTGTG+GGG 0.583931 3_1:+78079109 Msa0377530:CDS
AGATGTAGATCACCTTAAGA+AGG 0.584321 3_1:+78079152 Msa0377530:CDS
TTCCACGAAGAGCGCGGACA+CGG 0.585377 3_1:-78080790 None:intergenic
TAGCTATGAAGAAGATGATG+AGG 0.589831 3_1:+78078050 Msa0377530:CDS
CTGCTATATCCCCAAAAGCA+TGG 0.592436 3_1:-78080742 None:intergenic
TTAGATACCCTCTTGCTGGT+AGG 0.594440 3_1:-78077998 None:intergenic
TCAAACAAGCAAAAGAACAA+TGG 0.598043 3_1:+78077802 Msa0377530:exon
CAAAAGTACTTTCAAAGCAG+AGG 0.607347 3_1:+78077876 Msa0377530:CDS
ATAGAAACCATAAAACTGCA+TGG 0.618576 3_1:-78077911 None:intergenic
CCTTAAGAAGGAAGAAGGTG+TGG 0.624960 3_1:+78079164 Msa0377530:CDS
AAGAGAATCCTACCAGCAAG+AGG 0.628874 3_1:+78077990 Msa0377530:CDS
GTTGTACACTATCAGAAAGG+GGG 0.629451 3_1:+78077963 Msa0377530:CDS
TGTTGTACACTATCAGAAAG+GGG 0.630282 3_1:+78077962 Msa0377530:CDS
GTCAGGTTCCACGAAGAGCG+CGG 0.664911 3_1:-78080796 None:intergenic
AGAGAATCCTACCAGCAAGA+GGG 0.665221 3_1:+78077991 Msa0377530:CDS
CTAACTTCAAAGAGACCTTG+TGG 0.666372 3_1:+78080635 Msa0377530:CDS
AACTTGAAATTAGACACATG+AGG 0.731891 3_1:+78079268 Msa0377530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATTAATGAAAAATAAT+TGG - chr3_1:78079013-78079032 None:intergenic 10.0%
!!! TTTTGTTTATTTACATTATT+AGG + chr3_1:78079748-78079767 Msa0377530:intron 10.0%
!!! CTATTTATTTTCATAAAAAA+AGG - chr3_1:78080452-78080471 None:intergenic 10.0%
!! ATCTAAATCTAATGATTTAA+TGG + chr3_1:78078015-78078034 Msa0377530:CDS 15.0%
!!! AGAAAAACATATTTTGAAAT+TGG + chr3_1:78078494-78078513 Msa0377530:intron 15.0%
!!! AAAAATAATTGGTTTTCTTA+GGG - chr3_1:78079002-78079021 None:intergenic 15.0%
!! TAAATTAATGTACTAAAAAG+GGG - chr3_1:78079309-78079328 None:intergenic 15.0%
!! CTAAATTAATGTACTAAAAA+GGG - chr3_1:78079310-78079329 None:intergenic 15.0%
!! TCTAAATTAATGTACTAAAA+AGG - chr3_1:78079311-78079330 None:intergenic 15.0%
!!! ATCACATTTCTAAAAAAATT+GGG - chr3_1:78079506-78079525 None:intergenic 15.0%
!!! TATCACATTTCTAAAAAAAT+TGG - chr3_1:78079507-78079526 None:intergenic 15.0%
!!! AAATTTTTCACAAATGAATA+TGG + chr3_1:78080572-78080591 Msa0377530:intron 15.0%
!! GCATATTTATATAGATATAT+AGG + chr3_1:78081032-78081051 Msa0377530:three_prime_UTR 15.0%
!! TTTCTATCAATTACTCTATT+AGG + chr3_1:78077927-78077946 Msa0377530:CDS 20.0%
!! AATTGAATTTACATCGAAAT+TGG - chr3_1:78078139-78078158 None:intergenic 20.0%
!!! GAAAAATAATTGGTTTTCTT+AGG - chr3_1:78079003-78079022 None:intergenic 20.0%
!! TATAATTCATACCTGAAATT+AGG - chr3_1:78079083-78079102 None:intergenic 20.0%
!!! TCACATTTCTAAAAAAATTG+GGG - chr3_1:78079505-78079524 None:intergenic 20.0%
!!! TTGACTGTTTTATATAACAA+AGG - chr3_1:78080300-78080319 None:intergenic 20.0%
!! CAAATAATAAATCAACTTTG+TGG + chr3_1:78081102-78081121 Msa0377530:three_prime_UTR 20.0%
! ATAGGAATGAATGAAATTGT+TGG + chr3_1:78078207-78078226 Msa0377530:intron 25.0%
!! ATAGAAGTATAGAACTACAA+AGG + chr3_1:78078266-78078285 Msa0377530:intron 25.0%
!!! TTTTTTTCCTTCATTGCATT+TGG + chr3_1:78078296-78078315 Msa0377530:intron 25.0%
!! TCTCCATTTCTTTTCAAAAT+TGG - chr3_1:78078437-78078456 None:intergenic 25.0%
!!! TATAGTTTTCGAGTTTATAG+AGG + chr3_1:78078467-78078486 Msa0377530:intron 25.0%
! GTCTTTATACACTAAAATTG+TGG + chr3_1:78078530-78078549 Msa0377530:intron 25.0%
! AAACAAGATACTATTGGAAT+GGG - chr3_1:78078644-78078663 None:intergenic 25.0%
! TTATCCAAACAAGATACTAT+TGG - chr3_1:78078650-78078669 None:intergenic 25.0%
! GAAAGCAACTTATATGAAAA+TGG - chr3_1:78078765-78078784 None:intergenic 25.0%
!! ACTTTTACAATTCATGTGAA+TGG + chr3_1:78078976-78078995 Msa0377530:intron 25.0%
! TATAACTGACAATTTGATTG+TGG + chr3_1:78079107-78079126 Msa0377530:CDS 25.0%
! ATAACTGACAATTTGATTGT+GGG + chr3_1:78079108-78079127 Msa0377530:CDS 25.0%
! ATATATTCTAAACTTGCAAC+AGG + chr3_1:78079188-78079207 Msa0377530:CDS 25.0%
! GAAATTATCATCATTTGAAG+TGG - chr3_1:78079476-78079495 None:intergenic 25.0%
!! TTCTAAAAAAATTGGGGAAA+GGG - chr3_1:78079499-78079518 None:intergenic 25.0%
!! TTTCTAAAAAAATTGGGGAA+AGG - chr3_1:78079500-78079519 None:intergenic 25.0%
! ACTAAATATGTTTGTAGCTT+AGG + chr3_1:78079540-78079559 Msa0377530:intron 25.0%
!! TTAGGTTGTATTAGGAAATA+GGG + chr3_1:78079558-78079577 Msa0377530:intron 25.0%
! TAATTCAATCAAGAACAAGT+AGG - chr3_1:78079719-78079738 None:intergenic 25.0%
!!! TGTTTTTTGATTCAAAGACA+AGG - chr3_1:78079962-78079981 None:intergenic 25.0%
! TAGAAAAGACACTATAAATC+AGG + chr3_1:78080086-78080105 Msa0377530:intron 25.0%
! AGAAAAGACACTATAAATCA+GGG + chr3_1:78080087-78080106 Msa0377530:intron 25.0%
! AATAAGCTGAAAACAACTTA+TGG - chr3_1:78080204-78080223 None:intergenic 25.0%
! TTAAGTTATATATCCCATAC+AGG + chr3_1:78080511-78080530 Msa0377530:intron 25.0%
! TAAGTTATATATCCCATACA+GGG + chr3_1:78080512-78080531 Msa0377530:intron 25.0%
! TTAGCTGTGCAAAAAATAAA+AGG - chr3_1:78080598-78080617 None:intergenic 25.0%
! TCAATACTACATGGAATATT+TGG - chr3_1:78081078-78081097 None:intergenic 25.0%
!!! ATATTCCATGTAGTATTGAT+TGG + chr3_1:78081079-78081098 Msa0377530:three_prime_UTR 25.0%
! AAATCTACATTCTACAATCA+TGG - chr3_1:78081136-78081155 None:intergenic 25.0%
! AGAACAGAATTTAGATTCAA+TGG - chr3_1:78081186-78081205 None:intergenic 25.0%
TCAAACAAGCAAAAGAACAA+TGG + chr3_1:78077802-78077821 Msa0377530:exon 30.0%
! ATGGAAAGTGTAAGTAACAT+TGG + chr3_1:78077821-78077840 Msa0377530:CDS 30.0%
ATAGAAACCATAAAACTGCA+TGG - chr3_1:78077914-78077933 None:intergenic 30.0%
! TTTGTTGTACACTATCAGAA+AGG + chr3_1:78077960-78077979 Msa0377530:CDS 30.0%
TTGTTGTACACTATCAGAAA+GGG + chr3_1:78077961-78077980 Msa0377530:CDS 30.0%
TCGAAATTGGCAAAACAAAT+AGG - chr3_1:78078126-78078145 None:intergenic 30.0%
TATGAATACTCTTGAGAGAT+AGG + chr3_1:78078189-78078208 Msa0377530:intron 30.0%
! TGTGCCTTTTAGATTTAAAC+CGG + chr3_1:78078355-78078374 Msa0377530:intron 30.0%
! CTTTTAGATTTAAACCGGAA+GGG + chr3_1:78078360-78078379 Msa0377530:intron 30.0%
!! GCTCCAATTTTGAAAAGAAA+TGG + chr3_1:78078431-78078450 Msa0377530:intron 30.0%
CAAACAAGATACTATTGGAA+TGG - chr3_1:78078645-78078664 None:intergenic 30.0%
CATTCCAATAGTATCTTGTT+TGG + chr3_1:78078643-78078662 Msa0377530:intron 30.0%
CTTCTATAAACTATCTCAGA+TGG - chr3_1:78078793-78078812 None:intergenic 30.0%
!!! TTGCATTTTAGGATCTGTTT+GGG - chr3_1:78078903-78078922 None:intergenic 30.0%
!!! TTTGCATTTTAGGATCTGTT+TGG - chr3_1:78078904-78078923 None:intergenic 30.0%
TAACTGACAATTTGATTGTG+GGG + chr3_1:78079109-78079128 Msa0377530:CDS 30.0%
AACTTGAAATTAGACACATG+AGG + chr3_1:78079268-78079287 Msa0377530:CDS 30.0%
CTAGATTATCACATAATGCA+TGG - chr3_1:78079347-78079366 None:intergenic 30.0%
TCTAAAAAAATTGGGGAAAG+GGG - chr3_1:78079498-78079517 None:intergenic 30.0%
! TTTGTAGCTTAGGTTGTATT+AGG + chr3_1:78079550-78079569 Msa0377530:intron 30.0%
! CTTAGGTTGTATTAGGAAAT+AGG + chr3_1:78079557-78079576 Msa0377530:intron 30.0%
CTTGAAGTGTGCATATAAAT+TGG - chr3_1:78079603-78079622 None:intergenic 30.0%
CAATTTATATGCACACTTCA+AGG + chr3_1:78079601-78079620 Msa0377530:intron 30.0%
CTTGAAACTATTTCAAGAGT+CGG - chr3_1:78079680-78079699 None:intergenic 30.0%
TGACAATTGCTTATTTGTTC+TGG + chr3_1:78079903-78079922 Msa0377530:CDS 30.0%
TCGTATAAGCAAATCAAAAC+AGG - chr3_1:78080113-78080132 None:intergenic 30.0%
!!! TGTTTTGATTTGCTTATACG+AGG + chr3_1:78080112-78080131 Msa0377530:intron 30.0%
TAATCACTTGTGAGATTGTT+TGG + chr3_1:78080148-78080167 Msa0377530:intron 30.0%
AGATTGTTTGGAAGAGTTTA+TGG + chr3_1:78080160-78080179 Msa0377530:intron 30.0%
CAAATTTATAGTTCAAGTCC+TGG + chr3_1:78080317-78080336 Msa0377530:intron 30.0%
AACCTCTTGTGTAAAAAAAC+AGG + chr3_1:78080344-78080363 Msa0377530:intron 30.0%
ACCTCTTGTGTAAAAAAACA+GGG + chr3_1:78080345-78080364 Msa0377530:intron 30.0%
TTGTGTAAAAAAACAGGGTA+AGG + chr3_1:78080350-78080369 Msa0377530:intron 30.0%
!! CTTTGAAGTTAGCATATCAT+AGG - chr3_1:78080627-78080646 None:intergenic 30.0%
! CCTTGTATTGCTCTTTTATT+TGG - chr3_1:78080662-78080681 None:intergenic 30.0%
CCAAATAAAAGAGCAATACA+AGG + chr3_1:78080659-78080678 Msa0377530:CDS 30.0%
ATTTGGCTAAAAATGATCCA+TGG + chr3_1:78080693-78080712 Msa0377530:CDS 30.0%
AAAAGAACAACAACTTGTGT+AGG - chr3_1:78080960-78080979 None:intergenic 30.0%
ATTTGCCAATCAATACTACA+TGG - chr3_1:78081087-78081106 None:intergenic 30.0%
GAATTTAGATTCAATGGAAG+AGG - chr3_1:78081180-78081199 None:intergenic 30.0%
TTCAACATTCAGAGCTTCTT+TGG + chr3_1:78077850-78077869 Msa0377530:CDS 35.0%
!! CAAAAGTACTTTCAAAGCAG+AGG + chr3_1:78077876-78077895 Msa0377530:CDS 35.0%
! AAAATCGCCATGCAGTTTTA+TGG + chr3_1:78077904-78077923 Msa0377530:CDS 35.0%
TGTTGTACACTATCAGAAAG+GGG + chr3_1:78077962-78077981 Msa0377530:CDS 35.0%
TAGCTATGAAGAAGATGATG+AGG + chr3_1:78078050-78078069 Msa0377530:CDS 35.0%
GATCGTGATGATACTCATAA+GGG - chr3_1:78078078-78078097 None:intergenic 35.0%
AGATCGTGATGATACTCATA+AGG - chr3_1:78078079-78078098 None:intergenic 35.0%
TTATGAGTATCATCACGATC+TGG + chr3_1:78078078-78078097 Msa0377530:CDS 35.0%
TATGAGTATCATCACGATCT+GGG + chr3_1:78078079-78078098 Msa0377530:CDS 35.0%
GCTACTGTTGCATTAGATTT+AGG + chr3_1:78078229-78078248 Msa0377530:intron 35.0%
ACTGTTGCATTAGATTTAGG+TGG + chr3_1:78078232-78078251 Msa0377530:intron 35.0%
ACACAAACCAAATGCAATGA+AGG - chr3_1:78078306-78078325 None:intergenic 35.0%
CCTTCCGGTTTAAATCTAAA+AGG - chr3_1:78078362-78078381 None:intergenic 35.0%
! CCTTTTAGATTTAAACCGGA+AGG + chr3_1:78078359-78078378 Msa0377530:intron 35.0%
! CAGCACAAAGTTTGCATTTT+AGG - chr3_1:78078914-78078933 None:intergenic 35.0%
TATCAGTGATGCCTAATTTC+AGG + chr3_1:78079069-78079088 Msa0377530:intron 35.0%
TTAAGGTGATCTACATCTTC+AGG - chr3_1:78079150-78079169 None:intergenic 35.0%
AGATGTAGATCACCTTAAGA+AGG + chr3_1:78079152-78079171 Msa0377530:CDS 35.0%
TCTAAACTTGCAACAGGATA+AGG + chr3_1:78079194-78079213 Msa0377530:CDS 35.0%
TGAAATGTTAGCTCAACAGT+AGG + chr3_1:78079377-78079396 Msa0377530:intron 35.0%
! ATCATTTGAAGTGGCACTAA+GGG - chr3_1:78079467-78079486 None:intergenic 35.0%
TTAGAATGGGCAATTTCTGA+GGG + chr3_1:78079827-78079846 Msa0377530:CDS 35.0%
AAATAAGCAATTGTCACTGC+TGG - chr3_1:78079899-78079918 None:intergenic 35.0%
TTGATTCAAAGACAAGGTGA+GGG - chr3_1:78079956-78079975 None:intergenic 35.0%
TTTGATTCAAAGACAAGGTG+AGG - chr3_1:78079957-78079976 None:intergenic 35.0%
TATTGTTGCACAAAACCTCT+TGG + chr3_1:78080019-78080038 Msa0377530:intron 35.0%
GAACTATCATTGAGAGCTTA+TGG - chr3_1:78080228-78080247 None:intergenic 35.0%
!!! ACCCTGTTTTTTTACACAAG+AGG - chr3_1:78080349-78080368 None:intergenic 35.0%
TTTGAATCCATGTCAGATTG+AGG - chr3_1:78080538-78080557 None:intergenic 35.0%
ACAAGGAGCAACTTATGATT+TGG + chr3_1:78080676-78080695 Msa0377530:CDS 35.0%
!! TTTTGGGGATATAGCAGATT+GGG + chr3_1:78080748-78080767 Msa0377530:CDS 35.0%
AGACTAATACCTAATTCGTC+AGG - chr3_1:78080816-78080835 None:intergenic 35.0%
ACACACAAAATCCAATATCC+TGG - chr3_1:78080855-78080874 None:intergenic 35.0%
ATGCTATACTTGTGATTGAC+AGG + chr3_1:78080916-78080935 Msa0377530:intron 35.0%
!! ACAAGTTGTTGTTCTTTTGC+AGG + chr3_1:78080962-78080981 Msa0377530:three_prime_UTR 35.0%
!! TTGTTGTTCTTTTGCAGGAT+TGG + chr3_1:78080967-78080986 Msa0377530:three_prime_UTR 35.0%
ATAGGTATATTGCCTGTAAC+TGG + chr3_1:78081050-78081069 Msa0377530:three_prime_UTR 35.0%
GAATATTTGGTACCAGTTAC+AGG - chr3_1:78081065-78081084 None:intergenic 35.0%
GTTGTACACTATCAGAAAGG+GGG + chr3_1:78077963-78077982 Msa0377530:CDS 40.0%
AGATTTAGATACCCTCTTGC+TGG - chr3_1:78078005-78078024 None:intergenic 40.0%
GATCTCTACTGAAACTCCTT+CGG - chr3_1:78078394-78078413 None:intergenic 40.0%
! GGAGCTTTTCAGAAATGAAG+AGG - chr3_1:78078416-78078435 None:intergenic 40.0%
TCAACCACTGAACATAACAG+GGG - chr3_1:78078605-78078624 None:intergenic 40.0%
CTCAACCACTGAACATAACA+GGG - chr3_1:78078606-78078625 None:intergenic 40.0%
TCTCAACCACTGAACATAAC+AGG - chr3_1:78078607-78078626 None:intergenic 40.0%
GATACTATTGGAATGGGAAG+TGG - chr3_1:78078638-78078657 None:intergenic 40.0%
CAGCTTATGACAAAAGCTGA+TGG + chr3_1:78078824-78078843 Msa0377530:intron 40.0%
! ATCTTCAGGTTTCTGTGGTT+GGG - chr3_1:78079136-78079155 None:intergenic 40.0%
! TCTACATCTTCAGGTTTCTG+TGG - chr3_1:78079141-78079160 None:intergenic 40.0%
GATCACCTTAAGAAGGAAGA+AGG + chr3_1:78079159-78079178 Msa0377530:CDS 40.0%
! AGGATAAGGATGCTGAGTTT+TGG + chr3_1:78079208-78079227 Msa0377530:CDS 40.0%
! GGATAAGGATGCTGAGTTTT+GGG + chr3_1:78079209-78079228 Msa0377530:CDS 40.0%
! GATAAGGATGCTGAGTTTTG+GGG + chr3_1:78079210-78079229 Msa0377530:CDS 40.0%
! CTAAAAAGGGGTTTGCTTAC+AGG - chr3_1:78079297-78079316 None:intergenic 40.0%
TCTCTGGCGTTGTAATTTCT+AGG + chr3_1:78079402-78079421 Msa0377530:intron 40.0%
CTCTGGCGTTGTAATTTCTA+GGG + chr3_1:78079403-78079422 Msa0377530:intron 40.0%
! CATCATTTGAAGTGGCACTA+AGG - chr3_1:78079468-78079487 None:intergenic 40.0%
TCTAAGGATGACACTGCTTT+AGG - chr3_1:78079812-78079831 None:intergenic 40.0%
AAGCAGTGTCATCCTTAGAA+TGG + chr3_1:78079813-78079832 Msa0377530:CDS 40.0%
AGCAGTGTCATCCTTAGAAT+GGG + chr3_1:78079814-78079833 Msa0377530:CDS 40.0%
CTCAGAAATTGCCCATTCTA+AGG - chr3_1:78079828-78079847 None:intergenic 40.0%
CTTAGAATGGGCAATTTCTG+AGG + chr3_1:78079826-78079845 Msa0377530:CDS 40.0%
TTGCACAAAACCTCTTGGTT+TGG + chr3_1:78080024-78080043 Msa0377530:intron 40.0%
!! ACAAAACCTCTTGGTTTGGT+GGG + chr3_1:78080028-78080047 Msa0377530:intron 40.0%
TTTGGTGGGAACAACTAACA+AGG + chr3_1:78080042-78080061 Msa0377530:intron 40.0%
TTTCTACTCTTAGCAGCTCA+AGG - chr3_1:78080072-78080091 None:intergenic 40.0%
! TTACACAAGAGGTTGTTTCC+AGG - chr3_1:78080338-78080357 None:intergenic 40.0%
GCTACGTACAATACACCAAA+TGG + chr3_1:78080372-78080391 Msa0377530:intron 40.0%
ACGTACAATACACCAAATGG+TGG + chr3_1:78080375-78080394 Msa0377530:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr3_1:78080376-78080395 Msa0377530:intron 40.0%
CTAACTTCAAAGAGACCTTG+TGG + chr3_1:78080635-78080654 Msa0377530:CDS 40.0%
!! GCTCTTTTATTTGGTCCACA+AGG - chr3_1:78080653-78080672 None:intergenic 40.0%
GGCTAAAAATGATCCATGGA+AGG + chr3_1:78080697-78080716 Msa0377530:CDS 40.0%
!! CTTTTGGGGATATAGCAGAT+TGG + chr3_1:78080747-78080766 Msa0377530:CDS 40.0%
CTATTGTGAAAATCAGCTCC+AGG + chr3_1:78080834-78080853 Msa0377530:intron 40.0%
GAAAATCAGCTCCAGGATAT+TGG + chr3_1:78080841-78080860 Msa0377530:intron 40.0%
!!! CTCTCAAGTTTTGAGCACTA+TGG - chr3_1:78081002-78081021 None:intergenic 40.0%
AAGAGAATCCTACCAGCAAG+AGG + chr3_1:78077990-78078009 Msa0377530:CDS 45.0%
AGAGAATCCTACCAGCAAGA+GGG + chr3_1:78077991-78078010 Msa0377530:CDS 45.0%
TTAGATACCCTCTTGCTGGT+AGG - chr3_1:78078001-78078020 None:intergenic 45.0%
TTTAAACCGGAAGGGTGATG+TGG + chr3_1:78078368-78078387 Msa0377530:intron 45.0%
TCTACCCCTGTTATGTTCAG+TGG + chr3_1:78078598-78078617 Msa0377530:intron 45.0%
! CATCTTCAGGTTTCTGTGGT+TGG - chr3_1:78079137-78079156 None:intergenic 45.0%
CCACACCTTCTTCCTTCTTA+AGG - chr3_1:78079167-78079186 None:intergenic 45.0%
CCTTAAGAAGGAAGAAGGTG+TGG + chr3_1:78079164-78079183 Msa0377530:CDS 45.0%
ACAGAATCCAAAACACGTCG+AGG + chr3_1:78079426-78079445 Msa0377530:intron 45.0%
CGTCGAGGACGATTGTAAAA+TGG + chr3_1:78079441-78079460 Msa0377530:intron 45.0%
AGTGCACTTCGCAAAGAGTT+TGG - chr3_1:78079788-78079807 None:intergenic 45.0%
! TGGGCAATTTCTGAGGGAAA+AGG + chr3_1:78079833-78079852 Msa0377530:CDS 45.0%
GTTTATGTGCACTGTACTGC+AGG + chr3_1:78079860-78079879 Msa0377530:CDS 45.0%
!! CACAAAACCTCTTGGTTTGG+TGG + chr3_1:78080027-78080046 Msa0377530:intron 45.0%
TGGTCTGGAAGACTCTCAAA+TGG - chr3_1:78080725-78080744 None:intergenic 45.0%
! AGTCTTCCAGACCATGCTTT+TGG + chr3_1:78080731-78080750 Msa0377530:CDS 45.0%
! GTCTTCCAGACCATGCTTTT+GGG + chr3_1:78080732-78080751 Msa0377530:CDS 45.0%
! TCTTCCAGACCATGCTTTTG+GGG + chr3_1:78080733-78080752 Msa0377530:CDS 45.0%
! ATATCCCCAAAAGCATGGTC+TGG - chr3_1:78080740-78080759 None:intergenic 45.0%
CTGCTATATCCCCAAAAGCA+TGG - chr3_1:78080745-78080764 None:intergenic 45.0%
TTCGTGGAACCTGACGAATT+AGG + chr3_1:78080804-78080823 Msa0377530:exon 45.0%
GATTGACAGGTCAGTGCTTA+TGG + chr3_1:78080929-78080948 Msa0377530:intron 45.0%
!!! TATTTATTTTCATAAAAAAA+GGG - chr3_1:78080451-78080470 None:intergenic 5.0%
AGCTCAACAGTAGGAGTCTC+TGG + chr3_1:78079386-78079405 Msa0377530:intron 50.0%
! CAATCGTCCTCGACGTGTTT+TGG - chr3_1:78079436-78079455 None:intergenic 50.0%
GTTGTTCCCACCAAACCAAG+AGG - chr3_1:78080037-78080056 None:intergenic 50.0%
GTCAGATTGAGGCCCTGTAT+GGG - chr3_1:78080527-78080546 None:intergenic 50.0%
TGTCAGATTGAGGCCCTGTA+TGG - chr3_1:78080528-78080547 None:intergenic 50.0%
TACAGGGCCTCAATCTGACA+TGG + chr3_1:78080528-78080547 Msa0377530:intron 50.0%
CTCTCAAATGGCTCCTTCCA+TGG - chr3_1:78080713-78080732 None:intergenic 50.0%
GGGATATAGCAGATTGGGAG+AGG + chr3_1:78080753-78080772 Msa0377530:CDS 50.0%
GTGCACTGTACTGCAGGACT+TGG + chr3_1:78079866-78079885 Msa0377530:CDS 55.0%
TAGGAAGGGGTCCCACCATT+TGG - chr3_1:78080390-78080409 None:intergenic 55.0%
ATACGCAGGGGTCTAGGAAG+GGG - chr3_1:78080403-78080422 None:intergenic 55.0%
CATACGCAGGGGTCTAGGAA+GGG - chr3_1:78080404-78080423 None:intergenic 55.0%
TTCCTAGACCCCTGCGTATG+CGG + chr3_1:78080404-78080423 Msa0377530:intron 55.0%
TAAAGCTCCCGCATACGCAG+GGG - chr3_1:78080415-78080434 None:intergenic 55.0%
CTAAAGCTCCCGCATACGCA+GGG - chr3_1:78080416-78080435 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG - chr3_1:78080417-78080436 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+TGG + chr3_1:78080421-78080440 Msa0377530:intron 55.0%
!!! CGCGGACACGGTTTTGAATC+AGG - chr3_1:78080781-78080800 None:intergenic 55.0%
CTTCGGCCACATCACCCTTC+CGG - chr3_1:78078377-78078396 None:intergenic 60.0%
GCATACGCAGGGGTCTAGGA+AGG - chr3_1:78080405-78080424 None:intergenic 60.0%
TCCTAGACCCCTGCGTATGC+GGG + chr3_1:78080405-78080424 Msa0377530:intron 60.0%
! TTCCACGAAGAGCGCGGACA+CGG - chr3_1:78080793-78080812 None:intergenic 60.0%
GTCAGGTTCCACGAAGAGCG+CGG - chr3_1:78080799-78080818 None:intergenic 60.0%
CGGAAGGGTGATGTGGCCGA+AGG + chr3_1:78078375-78078394 Msa0377530:intron 65.0%
TCCCGCATACGCAGGGGTCT+AGG - chr3_1:78080409-78080428 None:intergenic 65.0%
AACCGTGTCCGCGCTCTTCG+TGG + chr3_1:78080788-78080807 Msa0377530:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 78077787 78081253 78077787 ID=Msa0377530;Name=Msa0377530
chr3_1 mRNA 78077787 78081253 78077787 ID=Msa0377530-mRNA-1;Parent=Msa0377530;Name=Msa0377530-mRNA-1;_AED=0.13;_eAED=0.13;_QI=34|1|1|1|0.75|0.6|5|324|286
chr3_1 exon 78077787 78078100 78077787 ID=Msa0377530-mRNA-1:exon:18729;Parent=Msa0377530-mRNA-1
chr3_1 exon 78079091 78079296 78079091 ID=Msa0377530-mRNA-1:exon:18730;Parent=Msa0377530-mRNA-1
chr3_1 exon 78079770 78079940 78079770 ID=Msa0377530-mRNA-1:exon:18731;Parent=Msa0377530-mRNA-1
chr3_1 exon 78080614 78080825 78080614 ID=Msa0377530-mRNA-1:exon:18732;Parent=Msa0377530-mRNA-1
chr3_1 exon 78080938 78081253 78080938 ID=Msa0377530-mRNA-1:exon:18733;Parent=Msa0377530-mRNA-1
chr3_1 five_prime_UTR 78077787 78077820 78077787 ID=Msa0377530-mRNA-1:five_prime_utr;Parent=Msa0377530-mRNA-1
chr3_1 CDS 78077821 78078100 78077821 ID=Msa0377530-mRNA-1:cds;Parent=Msa0377530-mRNA-1
chr3_1 CDS 78079091 78079296 78079091 ID=Msa0377530-mRNA-1:cds;Parent=Msa0377530-mRNA-1
chr3_1 CDS 78079770 78079940 78079770 ID=Msa0377530-mRNA-1:cds;Parent=Msa0377530-mRNA-1
chr3_1 CDS 78080614 78080817 78080614 ID=Msa0377530-mRNA-1:cds;Parent=Msa0377530-mRNA-1
chr3_1 three_prime_UTR 78080818 78080825 78080818 ID=Msa0377530-mRNA-1:three_prime_utr;Parent=Msa0377530-mRNA-1
chr3_1 three_prime_UTR 78080938 78081253 78080938 ID=Msa0377530-mRNA-1:three_prime_utr;Parent=Msa0377530-mRNA-1
Gene Sequence

>Msa0377530

ATGGAAAGTGTAAGTAACATTGGTTTCTCTTCAACATTCAGAGCTTCTTTGGACACAAAAGTACTTTCAAAGCAGAGGAAACAAAAATCGCCATGCAGTTTTATGGTTTCTATCAATTACTCTATTAGGATGAACAAAATTTGTTGTACACTATCAGAAAGGGGGATTGAAGAGAATCCTACCAGCAAGAGGGTATCTAAATCTAATGATTTAATGGAAGAATACAATATAGCTATGAAGAAGATGATGAGGAACCCTTATGAGTATCATCACGATCTGGGTATGAATTATACAGTTATAACTGACAATTTGATTGTGGGGTCCCAACCACAGAAACCTGAAGATGTAGATCACCTTAAGAAGGAAGAAGGTGTGGCATATATTCTAAACTTGCAACAGGATAAGGATGCTGAGTTTTGGGGAATAGACTTGCAGTCAATAGTAAAAAAGTGTCGCGAACTTGAAATTAGACACATGAGGAGACCTGCAGTAGACTTTGATCCAAACTCTTTGCGAAGTGCACTACCTAAAGCAGTGTCATCCTTAGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTGCACTGTACTGCAGGACTTGGAAGAGCTCCAGCAGTGACAATTGCTTATTTGTTCTGGTTTTGTGACATGAATCTAAATGAAGCCTATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAAGAGCAATACAAGGAGCAACTTATGATTTGGCTAAAAATGATCCATGGAAGGAGCCATTTGAGAGTCTTCCAGACCATGCTTTTGGGGATATAGCAGATTGGGAGAGGAACCTGATTCAAAACCGTGTCCGCGCTCTTCGTGGAACCTGA

Protein sequence

>Msa0377530

MESVSNIGFSSTFRASLDTKVLSKQRKQKSPCSFMVSINYSIRMNKICCTLSERGIEENPTSKRVSKSNDLMEEYNIAMKKMMRNPYEYHHDLGMNYTVITDNLIVGSQPQKPEDVDHLKKEEGVAYILNLQQDKDAEFWGIDLQSIVKKCRELEIRHMRRPAVDFDPNSLRSALPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVTIAYLFWFCDMNLNEAYDMLTSKRPCGPNKRAIQGATYDLAKNDPWKEPFESLPDHAFGDIADWERNLIQNRVRALRGT*