AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1041710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041710 MtrunA17_Chr7g0257361 100.000 93 0 0 1 93 1 93 3.26e-62 194
Msa1041710 MtrunA17_Chr2g0305821 73.913 46 12 0 49 94 39 84 3.03e-20 79.7
Msa1041710 MtrunA17_Chr4g0073521 73.913 46 12 0 49 94 39 84 4.18e-20 82.8
Msa1041710 MtrunA17_Chr8g0355191 59.701 67 26 1 29 94 26 92 1.48e-19 81.6
Msa1041710 MtrunA17_Chr8g0355181 84.615 39 6 0 56 94 55 93 5.96e-18 77.0
Msa1041710 MtrunA17_Chr4g0002011 68.889 45 14 0 49 93 28 72 7.81e-18 76.3
Msa1041710 MtrunA17_Chr8g0362541 82.051 39 7 0 56 94 68 106 6.05e-17 74.3
Msa1041710 MtrunA17_Chr7g0216601 57.692 52 22 0 42 93 50 101 1.39e-15 70.5
Msa1041710 MtrunA17_Chr2g0328971 70.000 40 12 0 55 94 165 204 1.08e-14 67.8
Msa1041710 MtrunA17_Chr6g0452911 79.412 34 7 0 61 94 65 98 1.18e-14 67.8
Msa1041710 MtrunA17_Chr4g0072291 71.795 39 11 0 55 93 157 195 1.78e-14 67.4
Msa1041710 MtrunA17_Chr8g0367321 60.870 46 18 0 48 93 146 191 1.93e-14 65.5
Msa1041710 MtrunA17_Chr7g0249621 71.795 39 11 0 55 93 257 295 2.29e-14 67.0
Msa1041710 MtrunA17_Chr8g0343851 56.604 53 23 0 42 94 233 285 3.14e-14 66.6
Msa1041710 MtrunA17_Chr1g0152161 70.000 40 12 0 55 94 310 349 5.21e-14 65.9
Msa1041710 MtrunA17_Chr3g0135161 70.000 40 12 0 55 94 308 347 5.26e-14 65.9
Msa1041710 MtrunA17_Chr5g0412151 47.436 78 36 2 19 93 185 260 6.64e-14 65.5
Msa1041710 MtrunA17_Chr4g0032631 54.717 53 24 0 41 93 147 199 8.19e-14 65.5
Msa1041710 MtrunA17_Chr5g0400871 71.795 39 11 0 55 93 247 285 2.71e-13 63.9
Msa1041710 MtrunA17_Chr4g0054351 69.231 39 12 0 55 93 308 346 2.81e-13 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041710 AT2G41710.1 92.105 76 6 0 18 93 28 103 9.79e-47 154
Msa1041710 AT2G41710.2 92.105 76 6 0 18 93 28 103 1.06e-46 154
Msa1041710 AT2G41710.4 92.105 76 6 0 18 93 28 103 1.18e-46 155
Msa1041710 AT2G41710.3 63.063 111 6 1 18 93 28 138 7.70e-40 137
Msa1041710 AT3G54320.1 82.927 41 7 0 53 93 58 98 1.62e-18 79.0
Msa1041710 AT3G54320.3 82.927 41 7 0 53 93 58 98 1.67e-18 79.0
Msa1041710 AT1G16060.1 63.462 52 19 0 42 93 40 91 1.90e-17 75.5
Msa1041710 AT1G79700.1 62.963 54 20 0 40 93 32 85 2.41e-17 75.1
Msa1041710 AT1G79700.2 62.963 54 20 0 40 93 32 85 2.97e-17 74.7
Msa1041710 AT5G10510.2 72.500 40 11 0 55 94 225 264 9.81e-15 68.6
Msa1041710 AT5G65510.2 55.000 60 23 1 34 93 209 264 1.00e-14 68.6
Msa1041710 AT5G65510.1 55.000 60 23 1 34 93 209 264 1.00e-14 68.6
Msa1041710 AT5G57390.1 53.333 60 23 1 34 93 182 236 1.32e-14 68.2
Msa1041710 AT5G65510.4 55.000 60 23 1 34 93 151 206 1.46e-14 67.8
Msa1041710 AT5G57390.2 53.333 60 23 1 34 93 64 118 1.56e-14 67.8
Msa1041710 AT5G65510.3 55.000 60 23 1 34 93 151 206 1.60e-14 67.4
Msa1041710 AT3G20840.1 71.795 39 11 0 55 93 176 214 3.63e-14 66.6
Msa1041710 AT1G51190.1 71.795 39 11 0 55 93 185 223 3.89e-14 66.6
Msa1041710 AT5G10510.1 71.795 39 11 0 55 93 248 286 5.31e-14 66.2
Msa1041710 AT5G10510.6 71.795 39 11 0 55 93 263 301 5.48e-14 66.2
Msa1041710 AT5G10510.4 71.795 39 11 0 55 93 263 301 5.48e-14 66.2
Msa1041710 AT5G10510.3 71.795 39 11 0 55 93 263 301 5.66e-14 66.2
Msa1041710 AT5G10510.7 71.795 39 11 0 55 93 225 263 5.83e-14 66.2
Msa1041710 AT5G10510.5 71.795 39 11 0 55 93 225 263 5.83e-14 66.2
Msa1041710 AT5G17430.1 71.795 39 11 0 55 93 205 243 6.04e-14 66.2
Msa1041710 AT5G17430.2 71.795 39 11 0 55 93 143 181 7.93e-14 65.9
Msa1041710 AT1G72570.1 53.846 52 24 0 42 93 205 256 5.31e-13 63.5
Msa1041710 AT4G37750.1 46.377 69 31 1 31 93 248 316 8.84e-13 62.8

Find 132 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGTACAAGCTCAGCTTTC+AGG 0.147623 7_1:-79290051 None:intergenic
GAAATGACGTATGGCTTAAT+TGG 0.188557 7_1:-79286057 None:intergenic
ACCTTGCTGCTCTGAAATAT+TGG 0.236770 7_1:+79287077 Msa1041710:three_prime_UTR
TTACAAACATTGAAGGTATA+GGG 0.252605 7_1:+79288231 Msa1041710:intron
TTGAACATAAGTCAGGTTTA+AGG 0.255654 7_1:+79286797 Msa1041710:exon
CTCTCTCTAGCTCTCTGGTT+AGG 0.265145 7_1:+79286200 Msa1041710:five_prime_UTR
TTCAGTTCAGTGTGTGAGTT+TGG 0.293212 7_1:-79286159 None:intergenic
GTCGTTATGAAGCGCATCTA+TGG 0.312719 7_1:+79286718 Msa1041710:CDS
GCTTTCTTCAATTAGAAATT+CGG 0.325409 7_1:-79290022 None:intergenic
GAATTACGGAAATGTCCTTT+TGG 0.332772 7_1:-79286086 None:intergenic
CCTTGCTGCTCTGAAATATT+GGG 0.335890 7_1:+79287078 Msa1041710:three_prime_UTR
TGTGGTGATGGCAGTATACT+TGG 0.356648 7_1:+79286896 Msa1041710:three_prime_UTR
TACTTCAGTAGTATACATTA+TGG 0.365309 7_1:+79288055 Msa1041710:three_prime_UTR
TCTCTCTAGCTCTCTGGTTA+GGG 0.366293 7_1:+79286201 Msa1041710:five_prime_UTR
ACTTTACACTGTTGTTTGTC+TGG 0.368284 7_1:-79290070 None:intergenic
AAGCTCAGCTTTCAGGCTCT+TGG 0.370253 7_1:-79290044 None:intergenic
GTAGATGGAGCTGCGTTTAC+CGG 0.376066 7_1:-79286397 None:intergenic
CCTGGTGACACCACGGTAGA+TGG 0.379423 7_1:-79286412 None:intergenic
GTTTCAGCCACGGGAGTGAT+TGG 0.381045 7_1:+79289995 Msa1041710:three_prime_UTR
GCTCTGAAATATTGGGGTCC+TGG 0.386290 7_1:+79287085 Msa1041710:three_prime_UTR
GATGTCTCCGCAGACTTGCC+TGG 0.389093 7_1:-79286258 None:intergenic
GATAATCTTGTTCCAGCATC+AGG 0.401334 7_1:-79288359 None:intergenic
CCTAACTCTGGCATCTTGTA+TGG 0.401574 7_1:-79288461 None:intergenic
CTCTGAAATATTGGGGTCCT+GGG 0.403135 7_1:+79287086 Msa1041710:three_prime_UTR
TATCTCACAATGTAAAACTA+TGG 0.406250 7_1:-79290159 None:intergenic
CATTGGATCAACAGTGTTGT+AGG 0.410420 7_1:-79288792 None:intergenic
ATTCAGAGAGAGTGTGAAGA+AGG 0.412969 7_1:-79286132 None:intergenic
TAAGAAAGGAAAACAAGGTT+TGG 0.413241 7_1:+79286770 Msa1041710:CDS
AAACATAGTGTAGGTTGAAT+CGG 0.419840 7_1:-79289976 None:intergenic
ATTTAACAAATCACATCAAA+TGG 0.429612 7_1:+79288312 Msa1041710:three_prime_UTR
GGAGAAGAGAAGAAGAATTA+CGG 0.431720 7_1:-79286100 None:intergenic
CCATCATATGGTCGAATGGC+TGG 0.434411 7_1:+79288025 Msa1041710:three_prime_UTR
TCTTGTATGGTTCTGTCGGT+TGG 0.439420 7_1:-79288448 None:intergenic
CAATGGTAGATCCTGCTCTC+TGG 0.448245 7_1:+79288810 Msa1041710:three_prime_UTR
CCATACAAGATGCCAGAGTT+AGG 0.449780 7_1:+79288461 Msa1041710:three_prime_UTR
TGGACTGTTGAACATAAGTC+AGG 0.459923 7_1:+79286790 Msa1041710:exon
GCTTCGTCTTCCTCCGATCC+AGG 0.465220 7_1:+79286240 Msa1041710:CDS
TTGCTGCCATCATGATTTGA+AGG 0.466238 7_1:-79288671 None:intergenic
AACGGCTAGGACGCTCTTAA+GGG 0.467958 7_1:-79286032 None:intergenic
CAAAATATCGTGGACTCTCC+AGG 0.470890 7_1:+79287731 Msa1041710:three_prime_UTR
AAGAATACCTTGCGTCTTTG+CGG 0.473231 7_1:+79287609 Msa1041710:three_prime_UTR
GTGTGTGTATTAGGCATAGA+TGG 0.475086 7_1:+79286691 Msa1041710:intron
GTGTGAAGAAGGAGAAGAGA+AGG 0.475648 7_1:-79286121 None:intergenic
GCGGAAAGTGAATATGTTAG+TGG 0.475751 7_1:+79288266 Msa1041710:three_prime_UTR
TGTGCTGTGCATGAATTGAT+TGG 0.477876 7_1:+79286858 Msa1041710:three_prime_UTR
ATGAGAGATGTCCAGAGAGC+AGG 0.478776 7_1:-79288821 None:intergenic
CGTCATTTCAAAACCCCAAA+AGG 0.480814 7_1:+79286071 Msa1041710:five_prime_UTR
TTACTGTGAACTTAAAACAT+TGG 0.484291 7_1:+79288415 Msa1041710:three_prime_UTR
AATATTCTGTACAGAATAAG+AGG 0.491385 7_1:+79290298 Msa1041710:three_prime_UTR
TGGACGGAAATTCGTGTTTG+TGG 0.494109 7_1:+79286878 Msa1041710:three_prime_UTR
AGACTGTGACAATATACTTA+AGG 0.496868 7_1:-79288528 None:intergenic
TTAGGGTTTAGTTTCTCTGA+TGG 0.501425 7_1:+79286218 Msa1041710:exon
CTCCGCAGACTTGCCTGGAT+CGG 0.504022 7_1:-79286253 None:intergenic
TATCACATGGGTTGCTGAGG+TGG 0.506351 7_1:+79290122 Msa1041710:three_prime_UTR
AACATAGTGTAGGTTGAATC+GGG 0.509559 7_1:-79289975 None:intergenic
AAGAATCGACAACCTGATGC+TGG 0.510545 7_1:+79288347 Msa1041710:three_prime_UTR
GAAATTCGTGTTTGTGGTGA+TGG 0.512715 7_1:+79286884 Msa1041710:three_prime_UTR
AACAAATCACATCAAATGGT+GGG 0.514951 7_1:+79288316 Msa1041710:three_prime_UTR
CCATCTACCGTGGTGTCACC+AGG 0.516365 7_1:+79286412 Msa1041710:CDS
CTCAGATGTACGAGAAAGGC+CGG 0.518845 7_1:-79288858 None:intergenic
AGAAAGGCCGGCAGGAAGCA+TGG 0.520929 7_1:-79288846 None:intergenic
GGCATCTTGTATGGTTCTGT+CGG 0.520968 7_1:-79288452 None:intergenic
AATCAAAATCAGAATAAGAA+AGG 0.521721 7_1:+79286756 Msa1041710:CDS
GATAGGGGCGTATGATGATG+AGG 0.523399 7_1:+79287033 Msa1041710:intron
CTCATTCCCATGCTTCCTGC+CGG 0.523635 7_1:+79288839 Msa1041710:three_prime_UTR
TTGTGCAGCGGTCCTAACTC+TGG 0.524572 7_1:-79288473 None:intergenic
CGCAGACTTGCCTGGATCGG+AGG 0.526214 7_1:-79286250 None:intergenic
GATCGACTTGACATTGCAAT+GGG 0.526683 7_1:+79288695 Msa1041710:three_prime_UTR
AGTTCAGTGTGTGAGTTTGG+AGG 0.530351 7_1:-79286156 None:intergenic
GACATCAGAAGCAGTGGCGG+CGG 0.535185 7_1:+79286275 Msa1041710:CDS
TACAAACATTGAAGGTATAG+GGG 0.541200 7_1:+79288232 Msa1041710:intron
CAGACAAGAATGATGTCAAT+GGG 0.541457 7_1:-79288754 None:intergenic
CGTATGGCTTAATTGGATAA+CGG 0.543520 7_1:-79286050 None:intergenic
TCACACACTGAACTGAATAA+CGG 0.543521 7_1:+79286165 Msa1041710:five_prime_UTR
TCGTTATGAAGCGCATCTAT+GGG 0.548483 7_1:+79286719 Msa1041710:CDS
CTGCGTTTACCGGCGGCACA+CGG 0.551976 7_1:-79286387 None:intergenic
CGGCCTTTCTCGTACATCTG+AGG 0.553206 7_1:+79288859 Msa1041710:three_prime_UTR
CAACCTCAGATGTACGAGAA+AGG 0.556043 7_1:-79288862 None:intergenic
CCAGCCATTCGACCATATGA+TGG 0.556230 7_1:-79288025 None:intergenic
GATGTACGAGAAAGGCCGGC+AGG 0.557024 7_1:-79288854 None:intergenic
CAGAGAGCAGGATCTACCAT+TGG 0.557981 7_1:-79288809 None:intergenic
CTACACTATGTTTCAGCCAC+GGG 0.558537 7_1:+79289986 Msa1041710:three_prime_UTR
GAAAGGCCGGCAGGAAGCAT+GGG 0.562709 7_1:-79288845 None:intergenic
TAACAAATCACATCAAATGG+TGG 0.563622 7_1:+79288315 Msa1041710:three_prime_UTR
AAGAAAGCGAAGAAAGAGAG+AGG 0.564008 7_1:+79286330 Msa1041710:CDS
CAAGAGCATGCAAGAGAAAG+CGG 0.565366 7_1:+79288559 Msa1041710:three_prime_UTR
CAGAATAAGAAAGGAAAACA+AGG 0.566260 7_1:+79286765 Msa1041710:CDS
AAAATGCCTCCGTGTGCCGC+CGG 0.567788 7_1:+79286378 Msa1041710:CDS
TGATCGACTTGACATTGCAA+TGG 0.573444 7_1:+79288694 Msa1041710:three_prime_UTR
GGGAAGTTAATGAGAGTCCC+AGG 0.575325 7_1:-79287103 None:intergenic
GCAGACAAGAATGATGTCAA+TGG 0.579355 7_1:-79288755 None:intergenic
CTACAACACTGTTGATCCAA+TGG 0.582269 7_1:+79288793 Msa1041710:three_prime_UTR
GAGAAACCTTCAAATCATGA+TGG 0.583795 7_1:+79288665 Msa1041710:three_prime_UTR
GGTGGTATAAATTAGTCGAT+GGG 0.595240 7_1:+79288000 Msa1041710:intron
CAATGAGTTGGATCGTGGGA+AGG 0.597269 7_1:+79288637 Msa1041710:three_prime_UTR
CTTGCTGCTCTGAAATATTG+GGG 0.598020 7_1:+79287079 Msa1041710:three_prime_UTR
ATCTATGGGATAAAAGTACA+TGG 0.600414 7_1:+79286733 Msa1041710:CDS
GGGGCCATCATATGGTCGAA+TGG 0.601072 7_1:+79288021 Msa1041710:three_prime_UTR
ACAAATCACATCAAATGGTG+GGG 0.603517 7_1:+79288317 Msa1041710:three_prime_UTR
GACATTGCAATGGGAATGAG+TGG 0.603558 7_1:+79288704 Msa1041710:three_prime_UTR
ATAGTCAATGAGTTGGATCG+TGG 0.603810 7_1:+79288632 Msa1041710:three_prime_UTR
TGTATTAGGCATAGATGGAC+TGG 0.604842 7_1:+79286696 Msa1041710:intron
GGCTTAATTGGATAACGGCT+AGG 0.610508 7_1:-79286045 None:intergenic
TGCGGAGACATCAGAAGCAG+TGG 0.612285 7_1:+79286269 Msa1041710:CDS
AATACCTTGCGTCTTTGCGG+AGG 0.612438 7_1:+79287612 Msa1041710:three_prime_UTR
TAGTCAATGAGTTGGATCGT+GGG 0.613377 7_1:+79288633 Msa1041710:three_prime_UTR
CAATATCACATGGGTTGCTG+AGG 0.616110 7_1:+79290119 Msa1041710:three_prime_UTR
CCCAATATTTCAGAGCAGCA+AGG 0.616474 7_1:-79287078 None:intergenic
GTGGTGATGGCAGTATACTT+GGG 0.622929 7_1:+79286897 Msa1041710:three_prime_UTR
GTGGTATAAATTAGTCGATG+GGG 0.624432 7_1:+79288001 Msa1041710:intron
CCTACACTATGTTTCAGCCA+CGG 0.629098 7_1:+79289985 Msa1041710:three_prime_UTR
CTCCGATCCAGGCAAGTCTG+CGG 0.635318 7_1:+79286251 Msa1041710:CDS
CGGATGTCCAATCACTCCCG+TGG 0.636413 7_1:-79290002 None:intergenic
CACACCTCCGCAAAGACGCA+AGG 0.641142 7_1:-79287616 None:intergenic
GCTTGATGCAGGAAGAGCAG+TGG 0.645449 7_1:+79287691 Msa1041710:intron
CGTTTACCGGCGGCACACGG+AGG 0.650287 7_1:-79286384 None:intergenic
GGAGACATCAGAAGCAGTGG+CGG 0.652456 7_1:+79286272 Msa1041710:CDS
CTGTGCATGAATTGATTGGA+CGG 0.653861 7_1:+79286862 Msa1041710:three_prime_UTR
TTATCAGAAGAAAAGAAACA+TGG 0.660718 7_1:+79288377 Msa1041710:three_prime_UTR
GATGGAGCTGCGTTTACCGG+CGG 0.662168 7_1:-79286394 None:intergenic
GTGTTGTAGGCTGTCAAAAG+TGG 0.663016 7_1:-79288779 None:intergenic
AGAGGACTATCAAAATATCG+TGG 0.664033 7_1:+79287721 Msa1041710:three_prime_UTR
CCGTGGCTGAAACATAGTGT+AGG 0.666827 7_1:-79289985 None:intergenic
ATTCTGTACAGAATAAGAGG+TGG 0.668524 7_1:+79290301 Msa1041710:three_prime_UTR
AATGAAATTATGCAAGAACA+AGG 0.670675 7_1:+79290324 Msa1041710:three_prime_UTR
GTATGATGATGAGGAAGCAG+CGG 0.671234 7_1:+79287042 Msa1041710:three_prime_UTR
ACATTGCAATGGGAATGAGT+GGG 0.685010 7_1:+79288705 Msa1041710:three_prime_UTR
TGGTATAAATTAGTCGATGG+GGG 0.691919 7_1:+79288002 Msa1041710:intron
CTAGGTACCTGGTGACACCA+CGG 0.696451 7_1:-79286419 None:intergenic
TATAGGGGATAATTCAGCTG+CGG 0.697874 7_1:+79288247 Msa1041710:three_prime_UTR
AAACGCAGCTCCATCTACCG+TGG 0.712028 7_1:+79286402 Msa1041710:CDS
CATTGCAATGGGAATGAGTG+GGG 0.722588 7_1:+79288706 Msa1041710:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAATTGGTTTATTAT+GGG + chr7_1:79289280-79289299 Msa1041710:intron 10.0%
!!! TTTTAATGCATTGTTAATAT+TGG + chr7_1:79286977-79286996 Msa1041710:intron 15.0%
!!! AATAAACCAATTTAAAATGT+TGG - chr7_1:79289278-79289297 None:intergenic 15.0%
!!! CATTTTAAATTGGTTTATTA+TGG + chr7_1:79289279-79289298 Msa1041710:intron 15.0%
!!! AATATAATTAATGCAGTTTT+AGG + chr7_1:79289532-79289551 Msa1041710:intron 15.0%
!! CTGTAATTTGAAAAAATTAT+TGG - chr7_1:79289671-79289690 None:intergenic 15.0%
!!! TTTTTCAAATTACAGTTTTA+AGG + chr7_1:79289676-79289695 Msa1041710:intron 15.0%
!!! AAACAAATTTTGATTTTCTA+CGG + chr7_1:79290275-79290294 Msa1041710:three_prime_UTR 15.0%
!! TATTAGATTTAGATTCAGTT+TGG + chr7_1:79286486-79286505 Msa1041710:intron 20.0%
!!! TGATTGTTTGTTACTAAATT+TGG + chr7_1:79286662-79286681 Msa1041710:intron 20.0%
!! AATCAAAATCAGAATAAGAA+AGG + chr7_1:79286756-79286775 Msa1041710:CDS 20.0%
!! TACTTAATTTAGAGATAGTT+TGG + chr7_1:79287153-79287172 Msa1041710:intron 20.0%
!! TTTGATGAAAAATACAAAAC+AGG - chr7_1:79287244-79287263 None:intergenic 20.0%
!! AATACTAACAGATAAATGAT+TGG - chr7_1:79287351-79287370 None:intergenic 20.0%
!! CATTCAATAAAATATTAGCT+TGG - chr7_1:79288104-79288123 None:intergenic 20.0%
!!! CAAGCTAATATTTTATTGAA+TGG + chr7_1:79288102-79288121 Msa1041710:intron 20.0%
!! ATTTAACAAATCACATCAAA+TGG + chr7_1:79288312-79288331 Msa1041710:three_prime_UTR 20.0%
!!! AGTATTTTACTTTATTCACA+AGG + chr7_1:79288898-79288917 Msa1041710:intron 20.0%
!!! AAAAAGCATTAAATGAAAGT+AGG - chr7_1:79289025-79289044 None:intergenic 20.0%
!!! TATTTTTACTTTTATGAGTC+TGG + chr7_1:79289157-79289176 Msa1041710:intron 20.0%
!! ACTAGCATCTATAAAATTAA+AGG - chr7_1:79289348-79289367 None:intergenic 20.0%
!!! TTTAATTTTATAGATGCTAG+TGG + chr7_1:79289347-79289366 Msa1041710:intron 20.0%
!!! TATTTTTTCTTAAGTACTTC+TGG + chr7_1:79289480-79289499 Msa1041710:intron 20.0%
!! AAATATGTGAGATATGATTA+TGG - chr7_1:79289581-79289600 None:intergenic 20.0%
!!! TATTTGATAACATTCACATT+AGG - chr7_1:79289609-79289628 None:intergenic 20.0%
! TGATCCTTAACATATTTCAA+CGG - chr7_1:79286531-79286550 None:intergenic 25.0%
!! CATTGTTAATATTGGTTATG+TGG + chr7_1:79286985-79287004 Msa1041710:intron 25.0%
! GCTGGTTAAGAATTATAAAA+TGG + chr7_1:79287405-79287424 Msa1041710:intron 25.0%
! TTTCTGCTAAAACAATTTGA+TGG - chr7_1:79287764-79287783 None:intergenic 25.0%
! TACTTCAGTAGTATACATTA+TGG + chr7_1:79288055-79288074 Msa1041710:three_prime_UTR 25.0%
! TACCTTCAATGTTTGTAAAA+AGG - chr7_1:79288229-79288248 None:intergenic 25.0%
!! TTTACAAACATTGAAGGTAT+AGG + chr7_1:79288230-79288249 Msa1041710:intron 25.0%
!! TTACAAACATTGAAGGTATA+GGG + chr7_1:79288231-79288250 Msa1041710:intron 25.0%
! TTATCAGAAGAAAAGAAACA+TGG + chr7_1:79288377-79288396 Msa1041710:three_prime_UTR 25.0%
! TTACTGTGAACTTAAAACAT+TGG + chr7_1:79288415-79288434 Msa1041710:three_prime_UTR 25.0%
! CAAAAATATAGTCAATGAGT+TGG + chr7_1:79288625-79288644 Msa1041710:three_prime_UTR 25.0%
! CTCATTTAACAATGCTAAAA+AGG + chr7_1:79288941-79288960 Msa1041710:intron 25.0%
!! ATTCAGCCAACATTTTAAAT+TGG + chr7_1:79289269-79289288 Msa1041710:intron 25.0%
!!! ACAGTTTTAAGGATTTATTC+AGG + chr7_1:79289687-79289706 Msa1041710:intron 25.0%
! GCTTTCTTCAATTAGAAATT+CGG - chr7_1:79290025-79290044 None:intergenic 25.0%
! TATCTCACAATGTAAAACTA+TGG - chr7_1:79290162-79290181 None:intergenic 25.0%
! AATATTCTGTACAGAATAAG+AGG + chr7_1:79290298-79290317 Msa1041710:three_prime_UTR 25.0%
! AATGAAATTATGCAAGAACA+AGG + chr7_1:79290324-79290343 Msa1041710:three_prime_UTR 25.0%
! AATTACGGAAATGTCCTTTT+GGG - chr7_1:79286088-79286107 None:intergenic 30.0%
TTCTCCGTTGAAATATGTTA+AGG + chr7_1:79286524-79286543 Msa1041710:intron 30.0%
! ATCTATGGGATAAAAGTACA+TGG + chr7_1:79286733-79286752 Msa1041710:CDS 30.0%
CAGAATAAGAAAGGAAAACA+AGG + chr7_1:79286765-79286784 Msa1041710:CDS 30.0%
TAAGAAAGGAAAACAAGGTT+TGG + chr7_1:79286770-79286789 Msa1041710:CDS 30.0%
TTGAACATAAGTCAGGTTTA+AGG + chr7_1:79286797-79286816 Msa1041710:exon 30.0%
!!! CTCTTGTTATTCTTTTGTTC+TGG + chr7_1:79286940-79286959 Msa1041710:intron 30.0%
ATTCAAGCAACAATCTTACT+GGG - chr7_1:79287126-79287145 None:intergenic 30.0%
ACTAACAGATAAATGATTGG+AGG - chr7_1:79287348-79287367 None:intergenic 30.0%
! TATGCATTTCATTTTGCATG+TGG + chr7_1:79287979-79287998 Msa1041710:intron 30.0%
! CACCTTTTTACAAACATTGA+AGG + chr7_1:79288224-79288243 Msa1041710:intron 30.0%
! TACAAACATTGAAGGTATAG+GGG + chr7_1:79288232-79288251 Msa1041710:intron 30.0%
TAACAAATCACATCAAATGG+TGG + chr7_1:79288315-79288334 Msa1041710:three_prime_UTR 30.0%
AACAAATCACATCAAATGGT+GGG + chr7_1:79288316-79288335 Msa1041710:three_prime_UTR 30.0%
AGACTGTGACAATATACTTA+AGG - chr7_1:79288531-79288550 None:intergenic 30.0%
GGAGCTTCTCATTTATATTA+TGG + chr7_1:79289301-79289320 Msa1041710:intron 30.0%
TCTATCTGGCAATAATAAGT+TGG + chr7_1:79289735-79289754 Msa1041710:intron 30.0%
ACTGTTTATCACATCTTTGT+AGG + chr7_1:79289902-79289921 Msa1041710:intron 30.0%
TAATCCAAATGTTCTTGGTA+AGG - chr7_1:79289932-79289951 None:intergenic 30.0%
CACATTAATCCAAATGTTCT+TGG - chr7_1:79289937-79289956 None:intergenic 30.0%
! AAACATAGTGTAGGTTGAAT+CGG - chr7_1:79289979-79289998 None:intergenic 30.0%
CGTATGGCTTAATTGGATAA+CGG - chr7_1:79286053-79286072 None:intergenic 35.0%
GAAATGACGTATGGCTTAAT+TGG - chr7_1:79286060-79286079 None:intergenic 35.0%
! ATTACGGAAATGTCCTTTTG+GGG - chr7_1:79286087-79286106 None:intergenic 35.0%
! GAATTACGGAAATGTCCTTT+TGG - chr7_1:79286089-79286108 None:intergenic 35.0%
GGAGAAGAGAAGAAGAATTA+CGG - chr7_1:79286103-79286122 None:intergenic 35.0%
TCACACACTGAACTGAATAA+CGG + chr7_1:79286165-79286184 Msa1041710:five_prime_UTR 35.0%
! TTAGGGTTTAGTTTCTCTGA+TGG + chr7_1:79286218-79286237 Msa1041710:exon 35.0%
TGGTGAATTGTGTGTGTATT+AGG + chr7_1:79286682-79286701 Msa1041710:intron 35.0%
GATTCAAGCAACAATCTTAC+TGG - chr7_1:79287127-79287146 None:intergenic 35.0%
ACCAGATGGCATTTCAATTA+AGG - chr7_1:79287187-79287206 None:intergenic 35.0%
ACATGAATCACAAAACCAGA+TGG - chr7_1:79287201-79287220 None:intergenic 35.0%
AGAGGACTATCAAAATATCG+TGG + chr7_1:79287721-79287740 Msa1041710:three_prime_UTR 35.0%
! GTGTGTATTGCAAAAGTGTA+TGG + chr7_1:79287833-79287852 Msa1041710:intron 35.0%
TAATGATTCATTGACCAAGC+TGG + chr7_1:79287859-79287878 Msa1041710:intron 35.0%
TGTCTTTCTCATCTTTACTG+TGG + chr7_1:79287883-79287902 Msa1041710:intron 35.0%
TGGTGGTATAAATTAGTCGA+TGG + chr7_1:79287999-79288018 Msa1041710:intron 35.0%
GGTGGTATAAATTAGTCGAT+GGG + chr7_1:79288000-79288019 Msa1041710:intron 35.0%
GTGGTATAAATTAGTCGATG+GGG + chr7_1:79288001-79288020 Msa1041710:intron 35.0%
TGGTATAAATTAGTCGATGG+GGG + chr7_1:79288002-79288021 Msa1041710:intron 35.0%
GTAGTATACATTATGGTACG+TGG + chr7_1:79288062-79288081 Msa1041710:intron 35.0%
CAAAGATGCACAAATGAACA+TGG - chr7_1:79288138-79288157 None:intergenic 35.0%
TCATTTGTGCATCTTTGATG+TGG + chr7_1:79288141-79288160 Msa1041710:intron 35.0%
ACAAATCACATCAAATGGTG+GGG + chr7_1:79288317-79288336 Msa1041710:three_prime_UTR 35.0%
!! GAAAAGAAACATGGTTTTGC+TGG + chr7_1:79288386-79288405 Msa1041710:three_prime_UTR 35.0%
!!! TGTTTTTTCTCATTGTGCAG+CGG - chr7_1:79288488-79288507 None:intergenic 35.0%
GAGAAACCTTCAAATCATGA+TGG + chr7_1:79288665-79288684 Msa1041710:three_prime_UTR 35.0%
CAGACAAGAATGATGTCAAT+GGG - chr7_1:79288757-79288776 None:intergenic 35.0%
! ACACTATCATGTTGGTCTAA+TGG - chr7_1:79289230-79289249 None:intergenic 35.0%
CAGTAGTAACACTATCATGT+TGG - chr7_1:79289238-79289257 None:intergenic 35.0%
TATTGATCCCATAACCAGTT+TGG - chr7_1:79289516-79289535 None:intergenic 35.0%
! GTGAAAGTATGAATGAAGCT+AGG + chr7_1:79289635-79289654 Msa1041710:intron 35.0%
GATAGAGTTTGACTGCTATA+GGG - chr7_1:79289721-79289740 None:intergenic 35.0%
AGATAGAGTTTGACTGCTAT+AGG - chr7_1:79289722-79289741 None:intergenic 35.0%
TATAGCAGTCAAACTCTATC+TGG + chr7_1:79289721-79289740 Msa1041710:intron 35.0%
TAATTGTTTCGTGTAACCAG+TGG - chr7_1:79289788-79289807 None:intergenic 35.0%
!! CTTACAAACCAGGTTTTATG+GGG - chr7_1:79289829-79289848 None:intergenic 35.0%
!! CCTTACAAACCAGGTTTTAT+GGG - chr7_1:79289830-79289849 None:intergenic 35.0%
! ACCTTACAAACCAGGTTTTA+TGG - chr7_1:79289831-79289850 None:intergenic 35.0%
TTGTAAGGTTGAGTTAGTGT+AGG + chr7_1:79289842-79289861 Msa1041710:intron 35.0%
TTCACCTTACCAAGAACATT+TGG + chr7_1:79289925-79289944 Msa1041710:intron 35.0%
GAACATTTGGATTAATGTGC+AGG + chr7_1:79289938-79289957 Msa1041710:intron 35.0%
! AACATAGTGTAGGTTGAATC+GGG - chr7_1:79289978-79289997 None:intergenic 35.0%
! ACTTTACACTGTTGTTTGTC+TGG - chr7_1:79290073-79290092 None:intergenic 35.0%
TGATATTGCAAAAAGCCATG+GGG - chr7_1:79290107-79290126 None:intergenic 35.0%
GTGATATTGCAAAAAGCCAT+GGG - chr7_1:79290108-79290127 None:intergenic 35.0%
TGTGATATTGCAAAAAGCCA+TGG - chr7_1:79290109-79290128 None:intergenic 35.0%
! TGGCTTTTTGCAATATCACA+TGG + chr7_1:79290109-79290128 Msa1041710:three_prime_UTR 35.0%
! GGCTTTTTGCAATATCACAT+GGG + chr7_1:79290110-79290129 Msa1041710:three_prime_UTR 35.0%
ATTCTGTACAGAATAAGAGG+TGG + chr7_1:79290301-79290320 Msa1041710:three_prime_UTR 35.0%
!!! TGGGGTTTTGAAATGACGTA+TGG - chr7_1:79286069-79286088 None:intergenic 40.0%
CGTCATTTCAAAACCCCAAA+AGG + chr7_1:79286071-79286090 Msa1041710:five_prime_UTR 40.0%
! ATTCAGAGAGAGTGTGAAGA+AGG - chr7_1:79286135-79286154 None:intergenic 40.0%
TTCAGTTCAGTGTGTGAGTT+TGG - chr7_1:79286162-79286181 None:intergenic 40.0%
!!! ATTTTCTCTCTCTAGCTCTC+TGG + chr7_1:79286195-79286214 Msa1041710:five_prime_UTR 40.0%
! GATCAGCTTTTACTGTACAG+AGG + chr7_1:79286303-79286322 Msa1041710:CDS 40.0%
AAGAAAGCGAAGAAAGAGAG+AGG + chr7_1:79286330-79286349 Msa1041710:CDS 40.0%
AAGTTGAAGAGTAGCTAGCT+AGG - chr7_1:79286440-79286459 None:intergenic 40.0%
GTGTGTGTATTAGGCATAGA+TGG + chr7_1:79286691-79286710 Msa1041710:intron 40.0%
TGTATTAGGCATAGATGGAC+TGG + chr7_1:79286696-79286715 Msa1041710:intron 40.0%
TCGTTATGAAGCGCATCTAT+GGG + chr7_1:79286719-79286738 Msa1041710:CDS 40.0%
TGGACTGTTGAACATAAGTC+AGG + chr7_1:79286790-79286809 Msa1041710:exon 40.0%
TGTGCTGTGCATGAATTGAT+TGG + chr7_1:79286858-79286877 Msa1041710:three_prime_UTR 40.0%
CTGTGCATGAATTGATTGGA+CGG + chr7_1:79286862-79286881 Msa1041710:three_prime_UTR 40.0%
GAAATTCGTGTTTGTGGTGA+TGG + chr7_1:79286884-79286903 Msa1041710:three_prime_UTR 40.0%
!! ACCTTGCTGCTCTGAAATAT+TGG + chr7_1:79287077-79287096 Msa1041710:three_prime_UTR 40.0%
!! CCTTGCTGCTCTGAAATATT+GGG + chr7_1:79287078-79287097 Msa1041710:three_prime_UTR 40.0%
!! CTTGCTGCTCTGAAATATTG+GGG + chr7_1:79287079-79287098 Msa1041710:three_prime_UTR 40.0%
GCCTTAATTGAAATGCCATC+TGG + chr7_1:79287183-79287202 Msa1041710:intron 40.0%
! TGTGATTCATGTCCTCCTTT+TGG + chr7_1:79287209-79287228 Msa1041710:intron 40.0%
! GTGATTCATGTCCTCCTTTT+GGG + chr7_1:79287210-79287229 Msa1041710:intron 40.0%
!!! TTTACCCAGCCACTTTTTAG+TGG + chr7_1:79287295-79287314 Msa1041710:intron 40.0%
AGATCCACTAAAAAGTGGCT+GGG - chr7_1:79287302-79287321 None:intergenic 40.0%
!!! AGCCACTTTTTAGTGGATCT+GGG + chr7_1:79287302-79287321 Msa1041710:intron 40.0%
AAATCCAGTGCTCTCTTGAA+AGG + chr7_1:79287470-79287489 Msa1041710:intron 40.0%
!! TTTTCCTTTCAAGAGAGCAC+TGG - chr7_1:79287477-79287496 None:intergenic 40.0%
AGTGCTCTCTTGAAAGGAAA+AGG + chr7_1:79287476-79287495 Msa1041710:intron 40.0%
GTGCTCTCTTGAAAGGAAAA+GGG + chr7_1:79287477-79287496 Msa1041710:intron 40.0%
AAGAATACCTTGCGTCTTTG+CGG + chr7_1:79287609-79287628 Msa1041710:three_prime_UTR 40.0%
CATGTCATGTAAGCAGCAAT+AGG - chr7_1:79287672-79287691 None:intergenic 40.0%
TTACATGACATGCTTGATGC+AGG + chr7_1:79287680-79287699 Msa1041710:intron 40.0%
!!! AAGAGCAGTGGTTTTTCAAG+AGG + chr7_1:79287703-79287722 Msa1041710:three_prime_UTR 40.0%
TGGAGTTACAGTTCTTGATC+TGG + chr7_1:79287903-79287922 Msa1041710:intron 40.0%
! GCATTTCATTTTGCATGTGG+TGG + chr7_1:79287982-79288001 Msa1041710:intron 40.0%
GATCTTGCAGGAAAAACAGT+TGG - chr7_1:79288194-79288213 None:intergenic 40.0%
TATAGGGGATAATTCAGCTG+CGG + chr7_1:79288247-79288266 Msa1041710:three_prime_UTR 40.0%
GCGGAAAGTGAATATGTTAG+TGG + chr7_1:79288266-79288285 Msa1041710:three_prime_UTR 40.0%
GATAATCTTGTTCCAGCATC+AGG - chr7_1:79288362-79288381 None:intergenic 40.0%
! ATAGTCAATGAGTTGGATCG+TGG + chr7_1:79288632-79288651 Msa1041710:three_prime_UTR 40.0%
! TAGTCAATGAGTTGGATCGT+GGG + chr7_1:79288633-79288652 Msa1041710:three_prime_UTR 40.0%
TTGCTGCCATCATGATTTGA+AGG - chr7_1:79288674-79288693 None:intergenic 40.0%
!! TGATCGACTTGACATTGCAA+TGG + chr7_1:79288694-79288713 Msa1041710:three_prime_UTR 40.0%
!! GATCGACTTGACATTGCAAT+GGG + chr7_1:79288695-79288714 Msa1041710:three_prime_UTR 40.0%
ACATTGCAATGGGAATGAGT+GGG + chr7_1:79288705-79288724 Msa1041710:three_prime_UTR 40.0%
GCAGACAAGAATGATGTCAA+TGG - chr7_1:79288758-79288777 None:intergenic 40.0%
CATTGGATCAACAGTGTTGT+AGG - chr7_1:79288795-79288814 None:intergenic 40.0%
CTACAACACTGTTGATCCAA+TGG + chr7_1:79288793-79288812 Msa1041710:three_prime_UTR 40.0%
AAGTCCATCCAAACTGGTTA+TGG + chr7_1:79289505-79289524 Msa1041710:intron 40.0%
AGTCCATCCAAACTGGTTAT+GGG + chr7_1:79289506-79289525 Msa1041710:intron 40.0%
! TCTGGCAATAATAAGTTGGC+AGG + chr7_1:79289739-79289758 Msa1041710:intron 40.0%
! CTGGCAATAATAAGTTGGCA+GGG + chr7_1:79289740-79289759 Msa1041710:intron 40.0%
! CCCATAAAACCTGGTTTGTA+AGG + chr7_1:79289827-79289846 Msa1041710:intron 40.0%
CTAACTCAACCTTACAAACC+AGG - chr7_1:79289839-79289858 None:intergenic 40.0%
GATATTGCAAAAAGCCATGG+GGG - chr7_1:79290106-79290125 None:intergenic 40.0%
! GGCTTAATTGGATAACGGCT+AGG - chr7_1:79286048-79286067 None:intergenic 45.0%
GTGTGAAGAAGGAGAAGAGA+AGG - chr7_1:79286124-79286143 None:intergenic 45.0%
AGTTCAGTGTGTGAGTTTGG+AGG - chr7_1:79286159-79286178 None:intergenic 45.0%
!! TCTCTCTAGCTCTCTGGTTA+GGG + chr7_1:79286201-79286220 Msa1041710:five_prime_UTR 45.0%
! GCACTGATGCTTCTGATCAA+AGG + chr7_1:79286614-79286633 Msa1041710:intron 45.0%
GTCGTTATGAAGCGCATCTA+TGG + chr7_1:79286718-79286737 Msa1041710:CDS 45.0%
TGGACGGAAATTCGTGTTTG+TGG + chr7_1:79286878-79286897 Msa1041710:three_prime_UTR 45.0%
!! TGTGGTGATGGCAGTATACT+TGG + chr7_1:79286896-79286915 Msa1041710:three_prime_UTR 45.0%
!! GTGGTGATGGCAGTATACTT+GGG + chr7_1:79286897-79286916 Msa1041710:three_prime_UTR 45.0%
!! TCGCCGGTGTGTTTTTGATA+GGG + chr7_1:79287017-79287036 Msa1041710:intron 45.0%
! GTATGATGATGAGGAAGCAG+CGG + chr7_1:79287042-79287061 Msa1041710:three_prime_UTR 45.0%
CCCAATATTTCAGAGCAGCA+AGG - chr7_1:79287081-79287100 None:intergenic 45.0%
!! CTCTGAAATATTGGGGTCCT+GGG + chr7_1:79287086-79287105 Msa1041710:three_prime_UTR 45.0%
CAGATCCACTAAAAAGTGGC+TGG - chr7_1:79287303-79287322 None:intergenic 45.0%
!!! CAGCCACTTTTTAGTGGATC+TGG + chr7_1:79287301-79287320 Msa1041710:intron 45.0%
CTCCCAGATCCACTAAAAAG+TGG - chr7_1:79287307-79287326 None:intergenic 45.0%
!! TTTTTAGTGGATCTGGGAGC+TGG + chr7_1:79287308-79287327 Msa1041710:intron 45.0%
CTTAACCAGCTGACATGTCA+GGG - chr7_1:79287395-79287414 None:intergenic 45.0%
TCTTAACCAGCTGACATGTC+AGG - chr7_1:79287396-79287415 None:intergenic 45.0%
!! AAAAGGGCGTTAAGCACTTC+TGG + chr7_1:79287493-79287512 Msa1041710:intron 45.0%
AAGTTTGATCTGTGTGCTGC+AGG + chr7_1:79287538-79287557 Msa1041710:intron 45.0%
CAAAATATCGTGGACTCTCC+AGG + chr7_1:79287731-79287750 Msa1041710:three_prime_UTR 45.0%
CAATTTGATGGAACCACACC+TGG - chr7_1:79287752-79287771 None:intergenic 45.0%
TTGCAATACACACGCAGACT+TGG - chr7_1:79287826-79287845 None:intergenic 45.0%
TGAGACGATAGTGATCTTGC+AGG - chr7_1:79288206-79288225 None:intergenic 45.0%
AAGAATCGACAACCTGATGC+TGG + chr7_1:79288347-79288366 Msa1041710:three_prime_UTR 45.0%
! TCTTGTATGGTTCTGTCGGT+TGG - chr7_1:79288451-79288470 None:intergenic 45.0%
! GGCATCTTGTATGGTTCTGT+CGG - chr7_1:79288455-79288474 None:intergenic 45.0%
CCTAACTCTGGCATCTTGTA+TGG - chr7_1:79288464-79288483 None:intergenic 45.0%
CCATACAAGATGCCAGAGTT+AGG + chr7_1:79288461-79288480 Msa1041710:three_prime_UTR 45.0%
! CAAGAGCATGCAAGAGAAAG+CGG + chr7_1:79288559-79288578 Msa1041710:three_prime_UTR 45.0%
AGAGAAAGCGGCAAAAAGAC+AGG + chr7_1:79288571-79288590 Msa1041710:three_prime_UTR 45.0%
GACATTGCAATGGGAATGAG+TGG + chr7_1:79288704-79288723 Msa1041710:three_prime_UTR 45.0%
CATTGCAATGGGAATGAGTG+GGG + chr7_1:79288706-79288725 Msa1041710:three_prime_UTR 45.0%
GTGTTGTAGGCTGTCAAAAG+TGG - chr7_1:79288782-79288801 None:intergenic 45.0%
CAACCTCAGATGTACGAGAA+AGG - chr7_1:79288865-79288884 None:intergenic 45.0%
! CTTTCTCGTACATCTGAGGT+TGG + chr7_1:79288863-79288882 Msa1041710:intron 45.0%
GATCCCATAACCAGTTTGGA+TGG - chr7_1:79289512-79289531 None:intergenic 45.0%
ACTCATCAGCAAATGTCGTG+TGG - chr7_1:79289558-79289577 None:intergenic 45.0%
ATTGTTCAATGCAGCACCAC+TGG + chr7_1:79289769-79289788 Msa1041710:intron 45.0%
TCAGTCGACAGGACTGTATA+TGG + chr7_1:79289869-79289888 Msa1041710:intron 45.0%
CCTACACTATGTTTCAGCCA+CGG + chr7_1:79289985-79290004 Msa1041710:three_prime_UTR 45.0%
CTACACTATGTTTCAGCCAC+GGG + chr7_1:79289986-79290005 Msa1041710:three_prime_UTR 45.0%
!! AAGTTCTAAACTCTCCCCCA+TGG + chr7_1:79290089-79290108 Msa1041710:three_prime_UTR 45.0%
! CAATATCACATGGGTTGCTG+AGG + chr7_1:79290119-79290138 Msa1041710:three_prime_UTR 45.0%
AACGGCTAGGACGCTCTTAA+GGG - chr7_1:79286035-79286054 None:intergenic 50.0%
TAACGGCTAGGACGCTCTTA+AGG - chr7_1:79286036-79286055 None:intergenic 50.0%
!! CTCTCTCTAGCTCTCTGGTT+AGG + chr7_1:79286200-79286219 Msa1041710:five_prime_UTR 50.0%
GTAGATGGAGCTGCGTTTAC+CGG - chr7_1:79286400-79286419 None:intergenic 50.0%
AGAGTAGCTAGCTAGGTACC+TGG - chr7_1:79286433-79286452 None:intergenic 50.0%
TATGTGGCGATGTTTGTCGC+CGG + chr7_1:79287001-79287020 Msa1041710:intron 50.0%
!! GTCGCCGGTGTGTTTTTGAT+AGG + chr7_1:79287016-79287035 Msa1041710:intron 50.0%
!! CGCCGGTGTGTTTTTGATAG+GGG + chr7_1:79287018-79287037 Msa1041710:intron 50.0%
CGCCCCTATCAAAAACACAC+CGG - chr7_1:79287023-79287042 None:intergenic 50.0%
! GATAGGGGCGTATGATGATG+AGG + chr7_1:79287033-79287052 Msa1041710:intron 50.0%
!! GCTCTGAAATATTGGGGTCC+TGG + chr7_1:79287085-79287104 Msa1041710:three_prime_UTR 50.0%
GGGAAGTTAATGAGAGTCCC+AGG - chr7_1:79287106-79287125 None:intergenic 50.0%
AACAGGACGTGAGTCCCAAA+AGG - chr7_1:79287227-79287246 None:intergenic 50.0%
TCTTTCCCTGACATGTCAGC+TGG + chr7_1:79287387-79287406 Msa1041710:intron 50.0%
AATACCTTGCGTCTTTGCGG+AGG + chr7_1:79287612-79287631 Msa1041710:three_prime_UTR 50.0%
GATGAGAAAGACAGCCAGCT+TGG - chr7_1:79287876-79287895 None:intergenic 50.0%
CCAGCCATTCGACCATATGA+TGG - chr7_1:79288028-79288047 None:intergenic 50.0%
CCATCATATGGTCGAATGGC+TGG + chr7_1:79288025-79288044 Msa1041710:three_prime_UTR 50.0%
! CAATGAGTTGGATCGTGGGA+AGG + chr7_1:79288637-79288656 Msa1041710:three_prime_UTR 50.0%
CAGAGAGCAGGATCTACCAT+TGG - chr7_1:79288812-79288831 None:intergenic 50.0%
CAATGGTAGATCCTGCTCTC+TGG + chr7_1:79288810-79288829 Msa1041710:three_prime_UTR 50.0%
ATGAGAGATGTCCAGAGAGC+AGG - chr7_1:79288824-79288843 None:intergenic 50.0%
CTCAGATGTACGAGAAAGGC+CGG - chr7_1:79288861-79288880 None:intergenic 50.0%
CTGGAGAAGTCCATCCAAAC+TGG + chr7_1:79289499-79289518 Msa1041710:intron 50.0%
TCGTACAGCCCCATAAAACC+TGG + chr7_1:79289818-79289837 Msa1041710:intron 50.0%
GTGTAGGAGAATCAGTCGAC+AGG + chr7_1:79289858-79289877 Msa1041710:intron 50.0%
CCGTGGCTGAAACATAGTGT+AGG - chr7_1:79289988-79290007 None:intergenic 50.0%
AAGCTCAGCTTTCAGGCTCT+TGG - chr7_1:79290047-79290066 None:intergenic 50.0%
CTGGTACAAGCTCAGCTTTC+AGG - chr7_1:79290054-79290073 None:intergenic 50.0%
! TATCACATGGGTTGCTGAGG+TGG + chr7_1:79290122-79290141 Msa1041710:three_prime_UTR 50.0%
TGCGGAGACATCAGAAGCAG+TGG + chr7_1:79286269-79286288 Msa1041710:CDS 55.0%
GGAGACATCAGAAGCAGTGG+CGG + chr7_1:79286272-79286291 Msa1041710:CDS 55.0%
AAACGCAGCTCCATCTACCG+TGG + chr7_1:79286402-79286421 Msa1041710:CDS 55.0%
CTAGGTACCTGGTGACACCA+CGG - chr7_1:79286422-79286441 None:intergenic 55.0%
AGGACGTGAGTCCCAAAAGG+AGG - chr7_1:79287224-79287243 None:intergenic 55.0%
GCTTGATGCAGGAAGAGCAG+TGG + chr7_1:79287691-79287710 Msa1041710:intron 55.0%
TATCGTGGACTCTCCAGGTG+TGG + chr7_1:79287736-79287755 Msa1041710:intron 55.0%
AGTCGATGGGGGCCATCATA+TGG + chr7_1:79288013-79288032 Msa1041710:intron 55.0%
GGGGCCATCATATGGTCGAA+TGG + chr7_1:79288021-79288040 Msa1041710:three_prime_UTR 55.0%
TTGTGCAGCGGTCCTAACTC+TGG - chr7_1:79288476-79288495 None:intergenic 55.0%
CTCATTCCCATGCTTCCTGC+CGG + chr7_1:79288839-79288858 Msa1041710:three_prime_UTR 55.0%
CGGCCTTTCTCGTACATCTG+AGG + chr7_1:79288859-79288878 Msa1041710:three_prime_UTR 55.0%
GTTTCAGCCACGGGAGTGAT+TGG + chr7_1:79289995-79290014 Msa1041710:three_prime_UTR 55.0%
GCTTCGTCTTCCTCCGATCC+AGG + chr7_1:79286240-79286259 Msa1041710:CDS 60.0%
CTCCGATCCAGGCAAGTCTG+CGG + chr7_1:79286251-79286270 Msa1041710:CDS 60.0%
CTCCGCAGACTTGCCTGGAT+CGG - chr7_1:79286256-79286275 None:intergenic 60.0%
GATGTCTCCGCAGACTTGCC+TGG - chr7_1:79286261-79286280 None:intergenic 60.0%
GACATCAGAAGCAGTGGCGG+CGG + chr7_1:79286275-79286294 Msa1041710:CDS 60.0%
AAAATGCCTCCGTGTGCCGC+CGG + chr7_1:79286378-79286397 Msa1041710:CDS 60.0%
GATGGAGCTGCGTTTACCGG+CGG - chr7_1:79286397-79286416 None:intergenic 60.0%
CCTGGTGACACCACGGTAGA+TGG - chr7_1:79286415-79286434 None:intergenic 60.0%
!! CCATCTACCGTGGTGTCACC+AGG + chr7_1:79286412-79286431 Msa1041710:CDS 60.0%
CACACCTCCGCAAAGACGCA+AGG - chr7_1:79287619-79287638 None:intergenic 60.0%
! GAAAGGCCGGCAGGAAGCAT+GGG - chr7_1:79288848-79288867 None:intergenic 60.0%
AGAAAGGCCGGCAGGAAGCA+TGG - chr7_1:79288849-79288868 None:intergenic 60.0%
GATGTACGAGAAAGGCCGGC+AGG - chr7_1:79288857-79288876 None:intergenic 60.0%
CGGATGTCCAATCACTCCCG+TGG - chr7_1:79290005-79290024 None:intergenic 60.0%
CGCAGACTTGCCTGGATCGG+AGG - chr7_1:79286253-79286272 None:intergenic 65.0%
CTGCGTTTACCGGCGGCACA+CGG - chr7_1:79286390-79286409 None:intergenic 65.0%
CGTTTACCGGCGGCACACGG+AGG - chr7_1:79286387-79286406 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 79286015 79290389 79286015 ID=Msa1041710;Name=Msa1041710
chr7_1 mRNA 79286015 79290389 79286015 ID=Msa1041710-mRNA-1;Parent=Msa1041710;Name=Msa1041710-mRNA-1;_AED=0.16;_eAED=0.16;_QI=222|1|1|1|0.71|0.75|8|1459|97
chr7_1 exon 79286015 79286433 79286015 ID=Msa1041710-mRNA-1:exon:21427;Parent=Msa1041710-mRNA-1
chr7_1 exon 79286704 79286918 79286704 ID=Msa1041710-mRNA-1:exon:21428;Parent=Msa1041710-mRNA-1
chr7_1 exon 79287038 79287126 79287038 ID=Msa1041710-mRNA-1:exon:21429;Parent=Msa1041710-mRNA-1
chr7_1 exon 79287560 79287633 79287560 ID=Msa1041710-mRNA-1:exon:21430;Parent=Msa1041710-mRNA-1
chr7_1 exon 79287702 79287752 79287702 ID=Msa1041710-mRNA-1:exon:21431;Parent=Msa1041710-mRNA-1
chr7_1 exon 79288015 79288076 79288015 ID=Msa1041710-mRNA-1:exon:21432;Parent=Msa1041710-mRNA-1
chr7_1 exon 79288246 79288880 79288246 ID=Msa1041710-mRNA-1:exon:21433;Parent=Msa1041710-mRNA-1
chr7_1 exon 79289960 79290389 79289960 ID=Msa1041710-mRNA-1:exon:21434;Parent=Msa1041710-mRNA-1
chr7_1 five_prime_UTR 79286015 79286236 79286015 ID=Msa1041710-mRNA-1:five_prime_utr;Parent=Msa1041710-mRNA-1
chr7_1 CDS 79286237 79286433 79286237 ID=Msa1041710-mRNA-1:cds;Parent=Msa1041710-mRNA-1
chr7_1 CDS 79286704 79286800 79286704 ID=Msa1041710-mRNA-1:cds;Parent=Msa1041710-mRNA-1
chr7_1 three_prime_UTR 79286801 79286918 79286801 ID=Msa1041710-mRNA-1:three_prime_utr;Parent=Msa1041710-mRNA-1
chr7_1 three_prime_UTR 79287038 79287126 79287038 ID=Msa1041710-mRNA-1:three_prime_utr;Parent=Msa1041710-mRNA-1
chr7_1 three_prime_UTR 79287560 79287633 79287560 ID=Msa1041710-mRNA-1:three_prime_utr;Parent=Msa1041710-mRNA-1
chr7_1 three_prime_UTR 79287702 79287752 79287702 ID=Msa1041710-mRNA-1:three_prime_utr;Parent=Msa1041710-mRNA-1
chr7_1 three_prime_UTR 79288015 79288076 79288015 ID=Msa1041710-mRNA-1:three_prime_utr;Parent=Msa1041710-mRNA-1
chr7_1 three_prime_UTR 79288246 79288880 79288246 ID=Msa1041710-mRNA-1:three_prime_utr;Parent=Msa1041710-mRNA-1
chr7_1 three_prime_UTR 79289960 79290389 79289960 ID=Msa1041710-mRNA-1:three_prime_utr;Parent=Msa1041710-mRNA-1
Gene Sequence

>Msa1041710

ATGGCTTCGTCTTCCTCCGATCCAGGCAAGTCTGCGGAGACATCAGAAGCAGTGGCGGCGGCGAATGATCAGCTTTTACTGTACAGAGGATTGAAGAAAGCGAAGAAAGAGAGAGGTTGTACTGCTAAAGAACGAATCAGTAAAATGCCTCCGTGTGCCGCCGGTAAACGCAGCTCCATCTACCGTGGTGTCACCAGGCATAGATGGACTGGTCGTTATGAAGCGCATCTATGGGATAAAAGTACATGGAATCAAAATCAGAATAAGAAAGGAAAACAAGGTTTGGACTGTTGA
Protein sequence

>Msa1041710

MASSSSDPGKSAETSEAVAAANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGLDC*