AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1133680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1133680 MtrunA17_Chr7g0257361 100.000 93 0 0 1 93 1 93 3.26e-62 194
Msa1133680 MtrunA17_Chr2g0305821 73.913 46 12 0 49 94 39 84 3.03e-20 79.7
Msa1133680 MtrunA17_Chr4g0073521 73.913 46 12 0 49 94 39 84 4.18e-20 82.8
Msa1133680 MtrunA17_Chr8g0355191 59.701 67 26 1 29 94 26 92 1.48e-19 81.6
Msa1133680 MtrunA17_Chr8g0355181 84.615 39 6 0 56 94 55 93 5.96e-18 77.0
Msa1133680 MtrunA17_Chr4g0002011 68.889 45 14 0 49 93 28 72 7.81e-18 76.3
Msa1133680 MtrunA17_Chr8g0362541 82.051 39 7 0 56 94 68 106 6.05e-17 74.3
Msa1133680 MtrunA17_Chr7g0216601 57.692 52 22 0 42 93 50 101 1.39e-15 70.5
Msa1133680 MtrunA17_Chr2g0328971 70.000 40 12 0 55 94 165 204 1.08e-14 67.8
Msa1133680 MtrunA17_Chr6g0452911 79.412 34 7 0 61 94 65 98 1.18e-14 67.8
Msa1133680 MtrunA17_Chr4g0072291 71.795 39 11 0 55 93 157 195 1.78e-14 67.4
Msa1133680 MtrunA17_Chr8g0367321 60.870 46 18 0 48 93 146 191 1.93e-14 65.5
Msa1133680 MtrunA17_Chr7g0249621 71.795 39 11 0 55 93 257 295 2.29e-14 67.0
Msa1133680 MtrunA17_Chr8g0343851 56.604 53 23 0 42 94 233 285 3.14e-14 66.6
Msa1133680 MtrunA17_Chr1g0152161 70.000 40 12 0 55 94 310 349 5.21e-14 65.9
Msa1133680 MtrunA17_Chr3g0135161 70.000 40 12 0 55 94 308 347 5.26e-14 65.9
Msa1133680 MtrunA17_Chr5g0412151 47.436 78 36 2 19 93 185 260 6.64e-14 65.5
Msa1133680 MtrunA17_Chr4g0032631 54.717 53 24 0 41 93 147 199 8.19e-14 65.5
Msa1133680 MtrunA17_Chr5g0400871 71.795 39 11 0 55 93 247 285 2.71e-13 63.9
Msa1133680 MtrunA17_Chr4g0054351 69.231 39 12 0 55 93 308 346 2.81e-13 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1133680 AT2G41710.1 92.105 76 6 0 18 93 28 103 9.79e-47 154
Msa1133680 AT2G41710.2 92.105 76 6 0 18 93 28 103 1.06e-46 154
Msa1133680 AT2G41710.4 92.105 76 6 0 18 93 28 103 1.18e-46 155
Msa1133680 AT2G41710.3 63.063 111 6 1 18 93 28 138 7.70e-40 137
Msa1133680 AT3G54320.1 82.927 41 7 0 53 93 58 98 1.62e-18 79.0
Msa1133680 AT3G54320.3 82.927 41 7 0 53 93 58 98 1.67e-18 79.0
Msa1133680 AT1G16060.1 63.462 52 19 0 42 93 40 91 1.90e-17 75.5
Msa1133680 AT1G79700.1 62.963 54 20 0 40 93 32 85 2.41e-17 75.1
Msa1133680 AT1G79700.2 62.963 54 20 0 40 93 32 85 2.97e-17 74.7
Msa1133680 AT5G10510.2 72.500 40 11 0 55 94 225 264 9.81e-15 68.6
Msa1133680 AT5G65510.2 55.000 60 23 1 34 93 209 264 1.00e-14 68.6
Msa1133680 AT5G65510.1 55.000 60 23 1 34 93 209 264 1.00e-14 68.6
Msa1133680 AT5G57390.1 53.333 60 23 1 34 93 182 236 1.32e-14 68.2
Msa1133680 AT5G65510.4 55.000 60 23 1 34 93 151 206 1.46e-14 67.8
Msa1133680 AT5G57390.2 53.333 60 23 1 34 93 64 118 1.56e-14 67.8
Msa1133680 AT5G65510.3 55.000 60 23 1 34 93 151 206 1.60e-14 67.4
Msa1133680 AT3G20840.1 71.795 39 11 0 55 93 176 214 3.63e-14 66.6
Msa1133680 AT1G51190.1 71.795 39 11 0 55 93 185 223 3.89e-14 66.6
Msa1133680 AT5G10510.1 71.795 39 11 0 55 93 248 286 5.31e-14 66.2
Msa1133680 AT5G10510.6 71.795 39 11 0 55 93 263 301 5.48e-14 66.2
Msa1133680 AT5G10510.4 71.795 39 11 0 55 93 263 301 5.48e-14 66.2
Msa1133680 AT5G10510.3 71.795 39 11 0 55 93 263 301 5.66e-14 66.2
Msa1133680 AT5G10510.7 71.795 39 11 0 55 93 225 263 5.83e-14 66.2
Msa1133680 AT5G10510.5 71.795 39 11 0 55 93 225 263 5.83e-14 66.2
Msa1133680 AT5G17430.1 71.795 39 11 0 55 93 205 243 6.04e-14 66.2
Msa1133680 AT5G17430.2 71.795 39 11 0 55 93 143 181 7.93e-14 65.9
Msa1133680 AT1G72570.1 53.846 52 24 0 42 93 205 256 5.31e-13 63.5
Msa1133680 AT4G37750.1 46.377 69 31 1 31 93 248 316 8.84e-13 62.8

Find 132 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGTACAAGCTCAGCTTTC+AGG 0.147623 7_3:-87387089 None:intergenic
GAAATGACGTATGGCTTAAT+TGG 0.188557 7_3:-87383095 None:intergenic
ACCTTGCTGCTCTGAAATAT+TGG 0.236770 7_3:+87384114 Msa1133680:three_prime_UTR
TTACAAACATTGAAGGTATA+GGG 0.252605 7_3:+87385267 Msa1133680:intron
TTGAACATAAGTCAGGTTTA+AGG 0.255654 7_3:+87383835 Msa1133680:exon
CTCTCTCTAGCTCTCTGGTT+AGG 0.265145 7_3:+87383238 Msa1133680:five_prime_UTR
TTCAGTTCAGTGTGTGAGTT+TGG 0.293212 7_3:-87383197 None:intergenic
GTCGTTATGAAGCGCATCTA+TGG 0.312719 7_3:+87383756 Msa1133680:CDS
GCTTTCTTCAATTAGAAATT+CGG 0.325409 7_3:-87387060 None:intergenic
GAATTACGGAAATGTCCTTT+TGG 0.332772 7_3:-87383124 None:intergenic
CCTTGCTGCTCTGAAATATT+GGG 0.335890 7_3:+87384115 Msa1133680:three_prime_UTR
TTGGGTGATGGCAGTATACT+TGG 0.344397 7_3:+87383933 Msa1133680:three_prime_UTR
TACTTCAGTAGTATACATTA+TGG 0.365309 7_3:+87385091 Msa1133680:three_prime_UTR
TCTCTCTAGCTCTCTGGTTA+GGG 0.366293 7_3:+87383239 Msa1133680:five_prime_UTR
ACTTTACACTGTTGTTTGTC+TGG 0.368284 7_3:-87387108 None:intergenic
AAGCTCAGCTTTCAGGCTCT+TGG 0.370253 7_3:-87387082 None:intergenic
GTAGATGGAGCTGCGTTTAC+CGG 0.376066 7_3:-87383435 None:intergenic
CCTGGTGACACCACGGTAGA+TGG 0.379423 7_3:-87383450 None:intergenic
GTTTCAGCCACGGGAGTGAT+TGG 0.381045 7_3:+87387033 Msa1133680:three_prime_UTR
GCTCTGAAATATTGGGGTCC+TGG 0.386290 7_3:+87384122 Msa1133680:three_prime_UTR
GATGTCTCCGCAGACTTGCC+TGG 0.389093 7_3:-87383296 None:intergenic
ATTGGACGGAAATTCGTGTT+TGG 0.398757 7_3:+87383914 Msa1133680:three_prime_UTR
GATAATCTTGTTCCAGCATC+AGG 0.401334 7_3:-87385395 None:intergenic
CCTAACTCTGGCATCTTGTA+TGG 0.401574 7_3:-87385497 None:intergenic
CTCTGAAATATTGGGGTCCT+GGG 0.403135 7_3:+87384123 Msa1133680:three_prime_UTR
TATCTCACAATGTAAAACTA+TGG 0.406250 7_3:-87387197 None:intergenic
CATTGGATCAACAGTGTTGT+AGG 0.410420 7_3:-87385828 None:intergenic
ATTCAGAGAGAGTGTGAAGA+AGG 0.412969 7_3:-87383170 None:intergenic
TAAGAAAGGAAAACAAGGTT+TGG 0.413241 7_3:+87383808 Msa1133680:CDS
AAACATAGTGTAGGTTGAAT+CGG 0.419840 7_3:-87387014 None:intergenic
ATTTAACAAATCACATCAAA+TGG 0.429612 7_3:+87385348 Msa1133680:three_prime_UTR
GGAGAAGAGAAGAAGAATTA+CGG 0.431720 7_3:-87383138 None:intergenic
CCATCATATGGTCGAATGGC+TGG 0.434411 7_3:+87385061 Msa1133680:three_prime_UTR
TCTTGTATGGTTCTGTCGGT+TGG 0.439420 7_3:-87385484 None:intergenic
CAATGGTAGATCCTGCTCTC+TGG 0.448245 7_3:+87385846 Msa1133680:three_prime_UTR
CCATACAAGATGCCAGAGTT+AGG 0.449780 7_3:+87385497 Msa1133680:three_prime_UTR
AAAGGCGGCGGCAGGAAGCA+TGG 0.454402 7_3:-87385882 None:intergenic
TTGGACGGAAATTCGTGTTT+GGG 0.457291 7_3:+87383915 Msa1133680:three_prime_UTR
TGGACTGTTGAACATAAGTC+AGG 0.459923 7_3:+87383828 Msa1133680:exon
GCTTCGTCTTCCTCCGATCC+AGG 0.465220 7_3:+87383278 Msa1133680:CDS
TTGCTGCCATCATGATTTGA+AGG 0.466238 7_3:-87385707 None:intergenic
AACGGCTAGGACGCTCTTAA+GGG 0.467958 7_3:-87383070 None:intergenic
CAAAATATCGTGGACTCTCC+AGG 0.470890 7_3:+87384767 Msa1133680:three_prime_UTR
AAGAATACCTTGCGTCTTTG+CGG 0.473231 7_3:+87384645 Msa1133680:three_prime_UTR
GTGTGTGTATTAGGCATAGA+TGG 0.475086 7_3:+87383729 Msa1133680:intron
GTGTGAAGAAGGAGAAGAGA+AGG 0.475648 7_3:-87383159 None:intergenic
GCGGAAAGTGAATATGTTAG+TGG 0.475751 7_3:+87385302 Msa1133680:three_prime_UTR
TGTGCTGTGCATGAATTGAT+TGG 0.477876 7_3:+87383896 Msa1133680:three_prime_UTR
ATGAGAGATGTCCAGAGAGC+AGG 0.478776 7_3:-87385857 None:intergenic
CGTCATTTCAAAACCCCAAA+AGG 0.480814 7_3:+87383109 Msa1133680:five_prime_UTR
TTACTGTGAACTTAAAACAT+TGG 0.484291 7_3:+87385451 Msa1133680:three_prime_UTR
GGAAATTCGTGTTTGGGTGA+TGG 0.488584 7_3:+87383921 Msa1133680:three_prime_UTR
AATATTCTGTACAGAATAAG+AGG 0.491385 7_3:+87387336 Msa1133680:three_prime_UTR
AGACTGTGACAATATACTTA+AGG 0.496868 7_3:-87385564 None:intergenic
TTAGGGTTTAGTTTCTCTGA+TGG 0.501425 7_3:+87383256 Msa1133680:exon
CTCCGCAGACTTGCCTGGAT+CGG 0.504022 7_3:-87383291 None:intergenic
TATCACATGGGTTGCTGAGG+TGG 0.506351 7_3:+87387160 Msa1133680:three_prime_UTR
AACATAGTGTAGGTTGAATC+GGG 0.509559 7_3:-87387013 None:intergenic
AAGAATCGACAACCTGATGC+TGG 0.510545 7_3:+87385383 Msa1133680:three_prime_UTR
AACAAATCACATCAAATGGT+GGG 0.514951 7_3:+87385352 Msa1133680:three_prime_UTR
CCATCTACCGTGGTGTCACC+AGG 0.516365 7_3:+87383450 Msa1133680:CDS
GGCATCTTGTATGGTTCTGT+CGG 0.520968 7_3:-87385488 None:intergenic
AATCAAAATCAGAATAAGAA+AGG 0.521721 7_3:+87383794 Msa1133680:CDS
GATAGGGGCGTATGATGATG+AGG 0.523399 7_3:+87384070 Msa1133680:intron
TTGTGCAGCGGTCCTAACTC+TGG 0.524572 7_3:-87385509 None:intergenic
AAGGCGGCGGCAGGAAGCAT+GGG 0.525954 7_3:-87385881 None:intergenic
CGCAGACTTGCCTGGATCGG+AGG 0.526214 7_3:-87383288 None:intergenic
GATCGACTTGACATTGCAAT+GGG 0.526683 7_3:+87385731 Msa1133680:three_prime_UTR
AGTTCAGTGTGTGAGTTTGG+AGG 0.530351 7_3:-87383194 None:intergenic
GACATCAGAAGCAGTGGCGG+CGG 0.535185 7_3:+87383313 Msa1133680:CDS
TACAAACATTGAAGGTATAG+GGG 0.541200 7_3:+87385268 Msa1133680:intron
CAGACAAGAATGATGTCAAT+GGG 0.541457 7_3:-87385790 None:intergenic
CGTATGGCTTAATTGGATAA+CGG 0.543520 7_3:-87383088 None:intergenic
TCACACACTGAACTGAATAA+CGG 0.543521 7_3:+87383203 Msa1133680:five_prime_UTR
TCGTTATGAAGCGCATCTAT+GGG 0.548483 7_3:+87383757 Msa1133680:CDS
CTGCGTTTACCGGCGGCACA+CGG 0.551976 7_3:-87383425 None:intergenic
CCAGCCATTCGACCATATGA+TGG 0.556230 7_3:-87385061 None:intergenic
CAGAGAGCAGGATCTACCAT+TGG 0.557981 7_3:-87385845 None:intergenic
CTACACTATGTTTCAGCCAC+GGG 0.558537 7_3:+87387024 Msa1133680:three_prime_UTR
CAACCTCAGATGTACGAGAA+AGG 0.563187 7_3:-87385900 None:intergenic
TAACAAATCACATCAAATGG+TGG 0.563622 7_3:+87385351 Msa1133680:three_prime_UTR
AAGAAAGCGAAGAAAGAGAG+AGG 0.564008 7_3:+87383368 Msa1133680:CDS
CAAGAGCATGCAAGAGAAAG+CGG 0.565366 7_3:+87385595 Msa1133680:three_prime_UTR
CAGAATAAGAAAGGAAAACA+AGG 0.566260 7_3:+87383803 Msa1133680:CDS
AAAATGCCTCCGTGTGCCGC+CGG 0.567788 7_3:+87383416 Msa1133680:CDS
TGATCGACTTGACATTGCAA+TGG 0.573444 7_3:+87385730 Msa1133680:three_prime_UTR
GGGAAGTTAATGAGAGTCCC+AGG 0.575325 7_3:-87384140 None:intergenic
CCGCCTTTCTCGTACATCTG+AGG 0.578834 7_3:+87385897 Msa1133680:three_prime_UTR
GCAGACAAGAATGATGTCAA+TGG 0.579355 7_3:-87385791 None:intergenic
CTACAACACTGTTGATCCAA+TGG 0.582269 7_3:+87385829 Msa1133680:three_prime_UTR
GAGAAACCTTCAAATCATGA+TGG 0.583795 7_3:+87385701 Msa1133680:three_prime_UTR
GGTGGTATAAATTAGTCGAT+GGG 0.595240 7_3:+87385036 Msa1133680:intron
CAATGAGTTGGATCGTGGGA+AGG 0.597269 7_3:+87385673 Msa1133680:three_prime_UTR
CTTGCTGCTCTGAAATATTG+GGG 0.598020 7_3:+87384116 Msa1133680:three_prime_UTR
ATCTATGGGATAAAAGTACA+TGG 0.600414 7_3:+87383771 Msa1133680:CDS
GGGGCCATCATATGGTCGAA+TGG 0.601072 7_3:+87385057 Msa1133680:three_prime_UTR
ACAAATCACATCAAATGGTG+GGG 0.603517 7_3:+87385353 Msa1133680:three_prime_UTR
GACATTGCAATGGGAATGAG+TGG 0.603558 7_3:+87385740 Msa1133680:three_prime_UTR
ATAGTCAATGAGTTGGATCG+TGG 0.603810 7_3:+87385668 Msa1133680:three_prime_UTR
TGTATTAGGCATAGATGGAC+TGG 0.604842 7_3:+87383734 Msa1133680:intron
GGCTTAATTGGATAACGGCT+AGG 0.610508 7_3:-87383083 None:intergenic
TGCGGAGACATCAGAAGCAG+TGG 0.612285 7_3:+87383307 Msa1133680:CDS
AATACCTTGCGTCTTTGCGG+AGG 0.612438 7_3:+87384648 Msa1133680:three_prime_UTR
TAGTCAATGAGTTGGATCGT+GGG 0.613377 7_3:+87385669 Msa1133680:three_prime_UTR
CAATATCACATGGGTTGCTG+AGG 0.616110 7_3:+87387157 Msa1133680:three_prime_UTR
CCCAATATTTCAGAGCAGCA+AGG 0.616474 7_3:-87384115 None:intergenic
CAGATGTACGAGAAAGGCGG+CGG 0.623795 7_3:-87385894 None:intergenic
GTGGTATAAATTAGTCGATG+GGG 0.624432 7_3:+87385037 Msa1133680:intron
CCTACACTATGTTTCAGCCA+CGG 0.629098 7_3:+87387023 Msa1133680:three_prime_UTR
CTCCGATCCAGGCAAGTCTG+CGG 0.635318 7_3:+87383289 Msa1133680:CDS
TGGGTGATGGCAGTATACTT+GGG 0.635768 7_3:+87383934 Msa1133680:three_prime_UTR
CGGATGTCCAATCACTCCCG+TGG 0.636413 7_3:-87387040 None:intergenic
CACACCTCCGCAAAGACGCA+AGG 0.641142 7_3:-87384652 None:intergenic
GCTTGATGCAGGAAGAGCAG+TGG 0.645449 7_3:+87384727 Msa1133680:intron
CGTTTACCGGCGGCACACGG+AGG 0.650287 7_3:-87383422 None:intergenic
GGAGACATCAGAAGCAGTGG+CGG 0.652456 7_3:+87383310 Msa1133680:CDS
CTGTGCATGAATTGATTGGA+CGG 0.653861 7_3:+87383900 Msa1133680:three_prime_UTR
TTATCAGAAGAAAAGAAACA+TGG 0.660718 7_3:+87385413 Msa1133680:three_prime_UTR
GATGGAGCTGCGTTTACCGG+CGG 0.662168 7_3:-87383432 None:intergenic
GTGTTGTAGGCTGTCAAAAG+TGG 0.663016 7_3:-87385815 None:intergenic
AGAGGACTATCAAAATATCG+TGG 0.664033 7_3:+87384757 Msa1133680:three_prime_UTR
CCGTGGCTGAAACATAGTGT+AGG 0.666827 7_3:-87387023 None:intergenic
ATTCTGTACAGAATAAGAGG+TGG 0.668524 7_3:+87387339 Msa1133680:three_prime_UTR
AATGAAATTATGCAAGAACA+AGG 0.670675 7_3:+87387362 Msa1133680:three_prime_UTR
GTATGATGATGAGGAAGCAG+CGG 0.671234 7_3:+87384079 Msa1133680:three_prime_UTR
ACATTGCAATGGGAATGAGT+GGG 0.685010 7_3:+87385741 Msa1133680:three_prime_UTR
TGGTATAAATTAGTCGATGG+GGG 0.691919 7_3:+87385038 Msa1133680:intron
CCTCAGATGTACGAGAAAGG+CGG 0.694679 7_3:-87385897 None:intergenic
CTAGGTACCTGGTGACACCA+CGG 0.696451 7_3:-87383457 None:intergenic
TATAGGGGATAATTCAGCTG+CGG 0.697874 7_3:+87385283 Msa1133680:three_prime_UTR
AAACGCAGCTCCATCTACCG+TGG 0.712028 7_3:+87383440 Msa1133680:CDS
CATTGCAATGGGAATGAGTG+GGG 0.722588 7_3:+87385742 Msa1133680:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAATTGGTTTATTAT+GGG + chr7_3:87386319-87386338 Msa1133680:intron 10.0%
!!! TTTTAATGCATTGTTAATAT+TGG + chr7_3:87384014-87384033 Msa1133680:intron 15.0%
!!! AATAAACCAATTTAAAATGT+TGG - chr7_3:87386317-87386336 None:intergenic 15.0%
!!! CATTTTAAATTGGTTTATTA+TGG + chr7_3:87386318-87386337 Msa1133680:intron 15.0%
!!! AATATAATTAATGCAGTTTT+AGG + chr7_3:87386571-87386590 Msa1133680:intron 15.0%
!! ACTGTAATTTGAAAAATTAT+TGG - chr7_3:87386710-87386729 None:intergenic 15.0%
!!! TTTTTCAAATTACAGTTTTA+AGG + chr7_3:87386714-87386733 Msa1133680:intron 15.0%
!!! AAACAAATTTTGATTTTCTA+CGG + chr7_3:87387313-87387332 Msa1133680:three_prime_UTR 15.0%
!! TATTAGATTTAGATTCAGTT+TGG + chr7_3:87383524-87383543 Msa1133680:intron 20.0%
!!! TGATTGTTTGTTACTAAATT+TGG + chr7_3:87383700-87383719 Msa1133680:intron 20.0%
!! AATCAAAATCAGAATAAGAA+AGG + chr7_3:87383794-87383813 Msa1133680:CDS 20.0%
!! TACTTAATTTAGAGATAGTT+TGG + chr7_3:87384190-87384209 Msa1133680:intron 20.0%
!! TTTGATGAAAAATACAAAAC+AGG - chr7_3:87384281-87384300 None:intergenic 20.0%
!! AATACTAACAGATAAATGAT+TGG - chr7_3:87384387-87384406 None:intergenic 20.0%
!! CATTCAATAAAATATTAGCT+TGG - chr7_3:87385140-87385159 None:intergenic 20.0%
!!! CAAGCTAATATTTTATTGAA+TGG + chr7_3:87385138-87385157 Msa1133680:intron 20.0%
!! ATTTAACAAATCACATCAAA+TGG + chr7_3:87385348-87385367 Msa1133680:three_prime_UTR 20.0%
!!! AGTATTTTACTTTATTCACA+AGG + chr7_3:87385936-87385955 Msa1133680:intron 20.0%
!!! AAAAAGCATTAAATGAAAGT+AGG - chr7_3:87386063-87386082 None:intergenic 20.0%
!!! TATTTTTACTTTTATGAGTC+TGG + chr7_3:87386195-87386214 Msa1133680:intron 20.0%
!! ACTAGCATCTATAAAATTAA+AGG - chr7_3:87386387-87386406 None:intergenic 20.0%
!!! TTTAATTTTATAGATGCTAG+TGG + chr7_3:87386386-87386405 Msa1133680:intron 20.0%
!!! TATTTTTTCTTAAGTACTTC+TGG + chr7_3:87386519-87386538 Msa1133680:intron 20.0%
!! AAATATGTGAGATATGATTA+TGG - chr7_3:87386620-87386639 None:intergenic 20.0%
!!! TATTTGATAACATTCACATT+AGG - chr7_3:87386648-87386667 None:intergenic 20.0%
! TGATCCTTAACATATTTCAA+CGG - chr7_3:87383569-87383588 None:intergenic 25.0%
!! CATTGTTAATATTGGTTATG+TGG + chr7_3:87384022-87384041 Msa1133680:intron 25.0%
! GCTGGTTAAGAATTATAAAA+TGG + chr7_3:87384441-87384460 Msa1133680:intron 25.0%
! TTTCTGCTAAAACAATTTGA+TGG - chr7_3:87384800-87384819 None:intergenic 25.0%
! TACTTCAGTAGTATACATTA+TGG + chr7_3:87385091-87385110 Msa1133680:three_prime_UTR 25.0%
! TACCTTCAATGTTTGTAAAA+AGG - chr7_3:87385265-87385284 None:intergenic 25.0%
!! TTTACAAACATTGAAGGTAT+AGG + chr7_3:87385266-87385285 Msa1133680:intron 25.0%
!! TTACAAACATTGAAGGTATA+GGG + chr7_3:87385267-87385286 Msa1133680:intron 25.0%
! TTATCAGAAGAAAAGAAACA+TGG + chr7_3:87385413-87385432 Msa1133680:three_prime_UTR 25.0%
! TTACTGTGAACTTAAAACAT+TGG + chr7_3:87385451-87385470 Msa1133680:three_prime_UTR 25.0%
! CAAAAATATAGTCAATGAGT+TGG + chr7_3:87385661-87385680 Msa1133680:three_prime_UTR 25.0%
! CTCATTTAACAATGCTAAAA+AGG + chr7_3:87385979-87385998 Msa1133680:intron 25.0%
!! ATTCAGCCAACATTTTAAAT+TGG + chr7_3:87386308-87386327 Msa1133680:intron 25.0%
!!! ACAGTTTTAAGGATTTATTC+AGG + chr7_3:87386725-87386744 Msa1133680:intron 25.0%
! GCTTTCTTCAATTAGAAATT+CGG - chr7_3:87387063-87387082 None:intergenic 25.0%
! TATCTCACAATGTAAAACTA+TGG - chr7_3:87387200-87387219 None:intergenic 25.0%
! AATATTCTGTACAGAATAAG+AGG + chr7_3:87387336-87387355 Msa1133680:three_prime_UTR 25.0%
! AATGAAATTATGCAAGAACA+AGG + chr7_3:87387362-87387381 Msa1133680:three_prime_UTR 25.0%
! AATTACGGAAATGTCCTTTT+GGG - chr7_3:87383126-87383145 None:intergenic 30.0%
TTCTCCGTTGAAATATGTTA+AGG + chr7_3:87383562-87383581 Msa1133680:intron 30.0%
! ATCTATGGGATAAAAGTACA+TGG + chr7_3:87383771-87383790 Msa1133680:CDS 30.0%
CAGAATAAGAAAGGAAAACA+AGG + chr7_3:87383803-87383822 Msa1133680:CDS 30.0%
TAAGAAAGGAAAACAAGGTT+TGG + chr7_3:87383808-87383827 Msa1133680:CDS 30.0%
TTGAACATAAGTCAGGTTTA+AGG + chr7_3:87383835-87383854 Msa1133680:exon 30.0%
!!! CTCTTGTTATTCTTTTGTTC+TGG + chr7_3:87383977-87383996 Msa1133680:intron 30.0%
ATTCAAGCAACAATCTTACT+GGG - chr7_3:87384163-87384182 None:intergenic 30.0%
ACTAACAGATAAATGATTGG+AGG - chr7_3:87384384-87384403 None:intergenic 30.0%
! TATGCATTTCATTTTGCATG+TGG + chr7_3:87385015-87385034 Msa1133680:intron 30.0%
! CACCTTTTTACAAACATTGA+AGG + chr7_3:87385260-87385279 Msa1133680:intron 30.0%
! TACAAACATTGAAGGTATAG+GGG + chr7_3:87385268-87385287 Msa1133680:intron 30.0%
TAACAAATCACATCAAATGG+TGG + chr7_3:87385351-87385370 Msa1133680:three_prime_UTR 30.0%
AACAAATCACATCAAATGGT+GGG + chr7_3:87385352-87385371 Msa1133680:three_prime_UTR 30.0%
AGACTGTGACAATATACTTA+AGG - chr7_3:87385567-87385586 None:intergenic 30.0%
GGAGCTTCTCATTTATATTA+TGG + chr7_3:87386340-87386359 Msa1133680:intron 30.0%
TCTATCTGGCAATAATAAGT+TGG + chr7_3:87386773-87386792 Msa1133680:intron 30.0%
ACTGTTTATCACATCTTTGT+AGG + chr7_3:87386940-87386959 Msa1133680:intron 30.0%
TAATCCAAATGTTCTTGGTA+AGG - chr7_3:87386970-87386989 None:intergenic 30.0%
CACATTAATCCAAATGTTCT+TGG - chr7_3:87386975-87386994 None:intergenic 30.0%
! AAACATAGTGTAGGTTGAAT+CGG - chr7_3:87387017-87387036 None:intergenic 30.0%
CGTATGGCTTAATTGGATAA+CGG - chr7_3:87383091-87383110 None:intergenic 35.0%
GAAATGACGTATGGCTTAAT+TGG - chr7_3:87383098-87383117 None:intergenic 35.0%
! ATTACGGAAATGTCCTTTTG+GGG - chr7_3:87383125-87383144 None:intergenic 35.0%
! GAATTACGGAAATGTCCTTT+TGG - chr7_3:87383127-87383146 None:intergenic 35.0%
GGAGAAGAGAAGAAGAATTA+CGG - chr7_3:87383141-87383160 None:intergenic 35.0%
TCACACACTGAACTGAATAA+CGG + chr7_3:87383203-87383222 Msa1133680:five_prime_UTR 35.0%
! TTAGGGTTTAGTTTCTCTGA+TGG + chr7_3:87383256-87383275 Msa1133680:exon 35.0%
TGGTGAATTGTGTGTGTATT+AGG + chr7_3:87383720-87383739 Msa1133680:intron 35.0%
GATTCAAGCAACAATCTTAC+TGG - chr7_3:87384164-87384183 None:intergenic 35.0%
ACCAGATGGCATTTCAATTA+AGG - chr7_3:87384224-87384243 None:intergenic 35.0%
ACATGAATCACAAAACCAGA+TGG - chr7_3:87384238-87384257 None:intergenic 35.0%
AGAGGACTATCAAAATATCG+TGG + chr7_3:87384757-87384776 Msa1133680:three_prime_UTR 35.0%
! GTGTGTATTGCAAAAGTGTA+TGG + chr7_3:87384869-87384888 Msa1133680:intron 35.0%
TAATGATTCATTGACCAAGC+TGG + chr7_3:87384895-87384914 Msa1133680:intron 35.0%
TGTCTTTCTCATCTTTACTG+TGG + chr7_3:87384919-87384938 Msa1133680:intron 35.0%
TGGTGGTATAAATTAGTCGA+TGG + chr7_3:87385035-87385054 Msa1133680:intron 35.0%
GGTGGTATAAATTAGTCGAT+GGG + chr7_3:87385036-87385055 Msa1133680:intron 35.0%
GTGGTATAAATTAGTCGATG+GGG + chr7_3:87385037-87385056 Msa1133680:intron 35.0%
TGGTATAAATTAGTCGATGG+GGG + chr7_3:87385038-87385057 Msa1133680:intron 35.0%
GTAGTATACATTATGGTACG+TGG + chr7_3:87385098-87385117 Msa1133680:intron 35.0%
CAAAGATGCACAAATGAACA+TGG - chr7_3:87385174-87385193 None:intergenic 35.0%
TCATTTGTGCATCTTTGATG+TGG + chr7_3:87385177-87385196 Msa1133680:intron 35.0%
ACAAATCACATCAAATGGTG+GGG + chr7_3:87385353-87385372 Msa1133680:three_prime_UTR 35.0%
!! GAAAAGAAACATGGTTTTGC+TGG + chr7_3:87385422-87385441 Msa1133680:three_prime_UTR 35.0%
!!! TGTTTTTTCTCATTGTGCAG+CGG - chr7_3:87385524-87385543 None:intergenic 35.0%
GAGAAACCTTCAAATCATGA+TGG + chr7_3:87385701-87385720 Msa1133680:three_prime_UTR 35.0%
CAGACAAGAATGATGTCAAT+GGG - chr7_3:87385793-87385812 None:intergenic 35.0%
! ACACTATCATGTTGGTCTAA+TGG - chr7_3:87386269-87386288 None:intergenic 35.0%
CAGTAGTAACACTATCATGT+TGG - chr7_3:87386277-87386296 None:intergenic 35.0%
TATTGATCCCATAACCAGTT+TGG - chr7_3:87386555-87386574 None:intergenic 35.0%
! GTGAAAGTATGAATGAAGCT+AGG + chr7_3:87386674-87386693 Msa1133680:intron 35.0%
GATAGAGTTTGACTGCTATA+GGG - chr7_3:87386759-87386778 None:intergenic 35.0%
AGATAGAGTTTGACTGCTAT+AGG - chr7_3:87386760-87386779 None:intergenic 35.0%
TATAGCAGTCAAACTCTATC+TGG + chr7_3:87386759-87386778 Msa1133680:intron 35.0%
TAATTGTTTCGTGTAACCAG+TGG - chr7_3:87386826-87386845 None:intergenic 35.0%
!! CTTACAAACCAGGTTTTATG+GGG - chr7_3:87386867-87386886 None:intergenic 35.0%
!! CCTTACAAACCAGGTTTTAT+GGG - chr7_3:87386868-87386887 None:intergenic 35.0%
! ACCTTACAAACCAGGTTTTA+TGG - chr7_3:87386869-87386888 None:intergenic 35.0%
TTGTAAGGTTGAGTTAGTGT+AGG + chr7_3:87386880-87386899 Msa1133680:intron 35.0%
TTCACCTTACCAAGAACATT+TGG + chr7_3:87386963-87386982 Msa1133680:intron 35.0%
GAACATTTGGATTAATGTGC+AGG + chr7_3:87386976-87386995 Msa1133680:intron 35.0%
! AACATAGTGTAGGTTGAATC+GGG - chr7_3:87387016-87387035 None:intergenic 35.0%
! ACTTTACACTGTTGTTTGTC+TGG - chr7_3:87387111-87387130 None:intergenic 35.0%
TGATATTGCAAAAAGCCATG+GGG - chr7_3:87387145-87387164 None:intergenic 35.0%
GTGATATTGCAAAAAGCCAT+GGG - chr7_3:87387146-87387165 None:intergenic 35.0%
TGTGATATTGCAAAAAGCCA+TGG - chr7_3:87387147-87387166 None:intergenic 35.0%
! TGGCTTTTTGCAATATCACA+TGG + chr7_3:87387147-87387166 Msa1133680:three_prime_UTR 35.0%
! GGCTTTTTGCAATATCACAT+GGG + chr7_3:87387148-87387167 Msa1133680:three_prime_UTR 35.0%
ATTCTGTACAGAATAAGAGG+TGG + chr7_3:87387339-87387358 Msa1133680:three_prime_UTR 35.0%
!!! TGGGGTTTTGAAATGACGTA+TGG - chr7_3:87383107-87383126 None:intergenic 40.0%
CGTCATTTCAAAACCCCAAA+AGG + chr7_3:87383109-87383128 Msa1133680:five_prime_UTR 40.0%
! ATTCAGAGAGAGTGTGAAGA+AGG - chr7_3:87383173-87383192 None:intergenic 40.0%
TTCAGTTCAGTGTGTGAGTT+TGG - chr7_3:87383200-87383219 None:intergenic 40.0%
!!! ATTTTCTCTCTCTAGCTCTC+TGG + chr7_3:87383233-87383252 Msa1133680:five_prime_UTR 40.0%
! GATCAGCTTTTACTGTACAG+AGG + chr7_3:87383341-87383360 Msa1133680:CDS 40.0%
AAGAAAGCGAAGAAAGAGAG+AGG + chr7_3:87383368-87383387 Msa1133680:CDS 40.0%
AAGTTGAAGAGTAGCTAGCT+AGG - chr7_3:87383478-87383497 None:intergenic 40.0%
GTGTGTGTATTAGGCATAGA+TGG + chr7_3:87383729-87383748 Msa1133680:intron 40.0%
TGTATTAGGCATAGATGGAC+TGG + chr7_3:87383734-87383753 Msa1133680:intron 40.0%
TCGTTATGAAGCGCATCTAT+GGG + chr7_3:87383757-87383776 Msa1133680:CDS 40.0%
TGGACTGTTGAACATAAGTC+AGG + chr7_3:87383828-87383847 Msa1133680:exon 40.0%
TGTGCTGTGCATGAATTGAT+TGG + chr7_3:87383896-87383915 Msa1133680:three_prime_UTR 40.0%
CTGTGCATGAATTGATTGGA+CGG + chr7_3:87383900-87383919 Msa1133680:three_prime_UTR 40.0%
ATTGGACGGAAATTCGTGTT+TGG + chr7_3:87383914-87383933 Msa1133680:three_prime_UTR 40.0%
TTGGACGGAAATTCGTGTTT+GGG + chr7_3:87383915-87383934 Msa1133680:three_prime_UTR 40.0%
!! ACCTTGCTGCTCTGAAATAT+TGG + chr7_3:87384114-87384133 Msa1133680:three_prime_UTR 40.0%
!! CCTTGCTGCTCTGAAATATT+GGG + chr7_3:87384115-87384134 Msa1133680:three_prime_UTR 40.0%
!! CTTGCTGCTCTGAAATATTG+GGG + chr7_3:87384116-87384135 Msa1133680:three_prime_UTR 40.0%
GCCTTAATTGAAATGCCATC+TGG + chr7_3:87384220-87384239 Msa1133680:intron 40.0%
! TGTGATTCATGTCCTCCTTT+TGG + chr7_3:87384246-87384265 Msa1133680:intron 40.0%
! GTGATTCATGTCCTCCTTTT+GGG + chr7_3:87384247-87384266 Msa1133680:intron 40.0%
!!! TTTACCCAGCCACTTTTTAG+TGG + chr7_3:87384331-87384350 Msa1133680:intron 40.0%
AGATCCACTAAAAAGTGGCT+GGG - chr7_3:87384338-87384357 None:intergenic 40.0%
!!! AGCCACTTTTTAGTGGATCT+GGG + chr7_3:87384338-87384357 Msa1133680:intron 40.0%
AAATCCAGTGCTCTCTTGAA+AGG + chr7_3:87384506-87384525 Msa1133680:intron 40.0%
!! TTTTCCTTTCAAGAGAGCAC+TGG - chr7_3:87384513-87384532 None:intergenic 40.0%
AGTGCTCTCTTGAAAGGAAA+AGG + chr7_3:87384512-87384531 Msa1133680:intron 40.0%
GTGCTCTCTTGAAAGGAAAA+GGG + chr7_3:87384513-87384532 Msa1133680:intron 40.0%
AAGAATACCTTGCGTCTTTG+CGG + chr7_3:87384645-87384664 Msa1133680:three_prime_UTR 40.0%
CATGTCATGTAAGCAGCAAT+AGG - chr7_3:87384708-87384727 None:intergenic 40.0%
TTACATGACATGCTTGATGC+AGG + chr7_3:87384716-87384735 Msa1133680:intron 40.0%
!!! AAGAGCAGTGGTTTTTCAAG+AGG + chr7_3:87384739-87384758 Msa1133680:three_prime_UTR 40.0%
TGGAGTTACAGTTCTTGATC+TGG + chr7_3:87384939-87384958 Msa1133680:intron 40.0%
! GCATTTCATTTTGCATGTGG+TGG + chr7_3:87385018-87385037 Msa1133680:intron 40.0%
GATCTTGCAGGAAAAACAGT+TGG - chr7_3:87385230-87385249 None:intergenic 40.0%
TATAGGGGATAATTCAGCTG+CGG + chr7_3:87385283-87385302 Msa1133680:three_prime_UTR 40.0%
GCGGAAAGTGAATATGTTAG+TGG + chr7_3:87385302-87385321 Msa1133680:three_prime_UTR 40.0%
GATAATCTTGTTCCAGCATC+AGG - chr7_3:87385398-87385417 None:intergenic 40.0%
! ATAGTCAATGAGTTGGATCG+TGG + chr7_3:87385668-87385687 Msa1133680:three_prime_UTR 40.0%
! TAGTCAATGAGTTGGATCGT+GGG + chr7_3:87385669-87385688 Msa1133680:three_prime_UTR 40.0%
TTGCTGCCATCATGATTTGA+AGG - chr7_3:87385710-87385729 None:intergenic 40.0%
!! TGATCGACTTGACATTGCAA+TGG + chr7_3:87385730-87385749 Msa1133680:three_prime_UTR 40.0%
!! GATCGACTTGACATTGCAAT+GGG + chr7_3:87385731-87385750 Msa1133680:three_prime_UTR 40.0%
ACATTGCAATGGGAATGAGT+GGG + chr7_3:87385741-87385760 Msa1133680:three_prime_UTR 40.0%
GCAGACAAGAATGATGTCAA+TGG - chr7_3:87385794-87385813 None:intergenic 40.0%
CATTGGATCAACAGTGTTGT+AGG - chr7_3:87385831-87385850 None:intergenic 40.0%
CTACAACACTGTTGATCCAA+TGG + chr7_3:87385829-87385848 Msa1133680:three_prime_UTR 40.0%
AAGTCCATCCAAACTGGTTA+TGG + chr7_3:87386544-87386563 Msa1133680:intron 40.0%
AGTCCATCCAAACTGGTTAT+GGG + chr7_3:87386545-87386564 Msa1133680:intron 40.0%
! TCTGGCAATAATAAGTTGGC+AGG + chr7_3:87386777-87386796 Msa1133680:intron 40.0%
! CTGGCAATAATAAGTTGGCA+GGG + chr7_3:87386778-87386797 Msa1133680:intron 40.0%
! CCCATAAAACCTGGTTTGTA+AGG + chr7_3:87386865-87386884 Msa1133680:intron 40.0%
CTAACTCAACCTTACAAACC+AGG - chr7_3:87386877-87386896 None:intergenic 40.0%
GATATTGCAAAAAGCCATGG+GGG - chr7_3:87387144-87387163 None:intergenic 40.0%
! GGCTTAATTGGATAACGGCT+AGG - chr7_3:87383086-87383105 None:intergenic 45.0%
GTGTGAAGAAGGAGAAGAGA+AGG - chr7_3:87383162-87383181 None:intergenic 45.0%
AGTTCAGTGTGTGAGTTTGG+AGG - chr7_3:87383197-87383216 None:intergenic 45.0%
!! TCTCTCTAGCTCTCTGGTTA+GGG + chr7_3:87383239-87383258 Msa1133680:five_prime_UTR 45.0%
! GCACTGATGCTTCTGATCAA+AGG + chr7_3:87383652-87383671 Msa1133680:intron 45.0%
GTCGTTATGAAGCGCATCTA+TGG + chr7_3:87383756-87383775 Msa1133680:CDS 45.0%
GGAAATTCGTGTTTGGGTGA+TGG + chr7_3:87383921-87383940 Msa1133680:three_prime_UTR 45.0%
! TTGGGTGATGGCAGTATACT+TGG + chr7_3:87383933-87383952 Msa1133680:three_prime_UTR 45.0%
! TGGGTGATGGCAGTATACTT+GGG + chr7_3:87383934-87383953 Msa1133680:three_prime_UTR 45.0%
!! TCGCCGGTGTGTTTTTGATA+GGG + chr7_3:87384054-87384073 Msa1133680:intron 45.0%
! GTATGATGATGAGGAAGCAG+CGG + chr7_3:87384079-87384098 Msa1133680:three_prime_UTR 45.0%
CCCAATATTTCAGAGCAGCA+AGG - chr7_3:87384118-87384137 None:intergenic 45.0%
!! CTCTGAAATATTGGGGTCCT+GGG + chr7_3:87384123-87384142 Msa1133680:three_prime_UTR 45.0%
CAGATCCACTAAAAAGTGGC+TGG - chr7_3:87384339-87384358 None:intergenic 45.0%
!!! CAGCCACTTTTTAGTGGATC+TGG + chr7_3:87384337-87384356 Msa1133680:intron 45.0%
CTCCCAGATCCACTAAAAAG+TGG - chr7_3:87384343-87384362 None:intergenic 45.0%
!! TTTTTAGTGGATCTGGGAGC+TGG + chr7_3:87384344-87384363 Msa1133680:intron 45.0%
CTTAACCAGCTGACATGTCA+GGG - chr7_3:87384431-87384450 None:intergenic 45.0%
TCTTAACCAGCTGACATGTC+AGG - chr7_3:87384432-87384451 None:intergenic 45.0%
!! AAAAGGGCGTTAAGCACTTC+TGG + chr7_3:87384529-87384548 Msa1133680:intron 45.0%
AAGTTTGATCTGTGTGCTGC+AGG + chr7_3:87384574-87384593 Msa1133680:intron 45.0%
CAAAATATCGTGGACTCTCC+AGG + chr7_3:87384767-87384786 Msa1133680:three_prime_UTR 45.0%
CAATTTGATGGAACCACACC+TGG - chr7_3:87384788-87384807 None:intergenic 45.0%
TTGCAATACACACGCAGACT+TGG - chr7_3:87384862-87384881 None:intergenic 45.0%
TGAGACGATAGTGATCTTGC+AGG - chr7_3:87385242-87385261 None:intergenic 45.0%
AAGAATCGACAACCTGATGC+TGG + chr7_3:87385383-87385402 Msa1133680:three_prime_UTR 45.0%
! TCTTGTATGGTTCTGTCGGT+TGG - chr7_3:87385487-87385506 None:intergenic 45.0%
! GGCATCTTGTATGGTTCTGT+CGG - chr7_3:87385491-87385510 None:intergenic 45.0%
CCTAACTCTGGCATCTTGTA+TGG - chr7_3:87385500-87385519 None:intergenic 45.0%
CCATACAAGATGCCAGAGTT+AGG + chr7_3:87385497-87385516 Msa1133680:three_prime_UTR 45.0%
! CAAGAGCATGCAAGAGAAAG+CGG + chr7_3:87385595-87385614 Msa1133680:three_prime_UTR 45.0%
AGAGAAAGCGGCAAAAAGAC+AGG + chr7_3:87385607-87385626 Msa1133680:three_prime_UTR 45.0%
GACATTGCAATGGGAATGAG+TGG + chr7_3:87385740-87385759 Msa1133680:three_prime_UTR 45.0%
CATTGCAATGGGAATGAGTG+GGG + chr7_3:87385742-87385761 Msa1133680:three_prime_UTR 45.0%
GTGTTGTAGGCTGTCAAAAG+TGG - chr7_3:87385818-87385837 None:intergenic 45.0%
CAACCTCAGATGTACGAGAA+AGG - chr7_3:87385903-87385922 None:intergenic 45.0%
! CTTTCTCGTACATCTGAGGT+TGG + chr7_3:87385901-87385920 Msa1133680:intron 45.0%
GATCCCATAACCAGTTTGGA+TGG - chr7_3:87386551-87386570 None:intergenic 45.0%
ACTCATCAGCAAATGTCGTG+TGG - chr7_3:87386597-87386616 None:intergenic 45.0%
ATTGTTCAATGCAGCACCAC+TGG + chr7_3:87386807-87386826 Msa1133680:intron 45.0%
TCAGTCGACAGGACTGTATA+TGG + chr7_3:87386907-87386926 Msa1133680:intron 45.0%
CCTACACTATGTTTCAGCCA+CGG + chr7_3:87387023-87387042 Msa1133680:three_prime_UTR 45.0%
CTACACTATGTTTCAGCCAC+GGG + chr7_3:87387024-87387043 Msa1133680:three_prime_UTR 45.0%
!! AAGTTCTAAACTCTCCCCCA+TGG + chr7_3:87387127-87387146 Msa1133680:three_prime_UTR 45.0%
! CAATATCACATGGGTTGCTG+AGG + chr7_3:87387157-87387176 Msa1133680:three_prime_UTR 45.0%
AACGGCTAGGACGCTCTTAA+GGG - chr7_3:87383073-87383092 None:intergenic 50.0%
TAACGGCTAGGACGCTCTTA+AGG - chr7_3:87383074-87383093 None:intergenic 50.0%
!! CTCTCTCTAGCTCTCTGGTT+AGG + chr7_3:87383238-87383257 Msa1133680:five_prime_UTR 50.0%
GTAGATGGAGCTGCGTTTAC+CGG - chr7_3:87383438-87383457 None:intergenic 50.0%
AGAGTAGCTAGCTAGGTACC+TGG - chr7_3:87383471-87383490 None:intergenic 50.0%
TATGTGGCGATGTTTGTCGC+CGG + chr7_3:87384038-87384057 Msa1133680:intron 50.0%
!! GTCGCCGGTGTGTTTTTGAT+AGG + chr7_3:87384053-87384072 Msa1133680:intron 50.0%
!! CGCCGGTGTGTTTTTGATAG+GGG + chr7_3:87384055-87384074 Msa1133680:intron 50.0%
CGCCCCTATCAAAAACACAC+CGG - chr7_3:87384060-87384079 None:intergenic 50.0%
! GATAGGGGCGTATGATGATG+AGG + chr7_3:87384070-87384089 Msa1133680:intron 50.0%
!! GCTCTGAAATATTGGGGTCC+TGG + chr7_3:87384122-87384141 Msa1133680:three_prime_UTR 50.0%
GGGAAGTTAATGAGAGTCCC+AGG - chr7_3:87384143-87384162 None:intergenic 50.0%
AACAGGACGTGAGTCCCAAA+AGG - chr7_3:87384264-87384283 None:intergenic 50.0%
TCTTTCCCTGACATGTCAGC+TGG + chr7_3:87384423-87384442 Msa1133680:intron 50.0%
AATACCTTGCGTCTTTGCGG+AGG + chr7_3:87384648-87384667 Msa1133680:three_prime_UTR 50.0%
GATGAGAAAGACAGCCAGCT+TGG - chr7_3:87384912-87384931 None:intergenic 50.0%
CCAGCCATTCGACCATATGA+TGG - chr7_3:87385064-87385083 None:intergenic 50.0%
CCATCATATGGTCGAATGGC+TGG + chr7_3:87385061-87385080 Msa1133680:three_prime_UTR 50.0%
! CAATGAGTTGGATCGTGGGA+AGG + chr7_3:87385673-87385692 Msa1133680:three_prime_UTR 50.0%
CAGAGAGCAGGATCTACCAT+TGG - chr7_3:87385848-87385867 None:intergenic 50.0%
CAATGGTAGATCCTGCTCTC+TGG + chr7_3:87385846-87385865 Msa1133680:three_prime_UTR 50.0%
ATGAGAGATGTCCAGAGAGC+AGG - chr7_3:87385860-87385879 None:intergenic 50.0%
CCTCAGATGTACGAGAAAGG+CGG - chr7_3:87385900-87385919 None:intergenic 50.0%
CTGGAGAAGTCCATCCAAAC+TGG + chr7_3:87386538-87386557 Msa1133680:intron 50.0%
TCGTACAGCCCCATAAAACC+TGG + chr7_3:87386856-87386875 Msa1133680:intron 50.0%
GTGTAGGAGAATCAGTCGAC+AGG + chr7_3:87386896-87386915 Msa1133680:intron 50.0%
CCGTGGCTGAAACATAGTGT+AGG - chr7_3:87387026-87387045 None:intergenic 50.0%
AAGCTCAGCTTTCAGGCTCT+TGG - chr7_3:87387085-87387104 None:intergenic 50.0%
CTGGTACAAGCTCAGCTTTC+AGG - chr7_3:87387092-87387111 None:intergenic 50.0%
! TATCACATGGGTTGCTGAGG+TGG + chr7_3:87387160-87387179 Msa1133680:three_prime_UTR 50.0%
TGCGGAGACATCAGAAGCAG+TGG + chr7_3:87383307-87383326 Msa1133680:CDS 55.0%
GGAGACATCAGAAGCAGTGG+CGG + chr7_3:87383310-87383329 Msa1133680:CDS 55.0%
AAACGCAGCTCCATCTACCG+TGG + chr7_3:87383440-87383459 Msa1133680:CDS 55.0%
CTAGGTACCTGGTGACACCA+CGG - chr7_3:87383460-87383479 None:intergenic 55.0%
AGGACGTGAGTCCCAAAAGG+AGG - chr7_3:87384261-87384280 None:intergenic 55.0%
GCTTGATGCAGGAAGAGCAG+TGG + chr7_3:87384727-87384746 Msa1133680:intron 55.0%
TATCGTGGACTCTCCAGGTG+TGG + chr7_3:87384772-87384791 Msa1133680:intron 55.0%
AGTCGATGGGGGCCATCATA+TGG + chr7_3:87385049-87385068 Msa1133680:intron 55.0%
GGGGCCATCATATGGTCGAA+TGG + chr7_3:87385057-87385076 Msa1133680:three_prime_UTR 55.0%
TTGTGCAGCGGTCCTAACTC+TGG - chr7_3:87385512-87385531 None:intergenic 55.0%
CAGATGTACGAGAAAGGCGG+CGG - chr7_3:87385897-87385916 None:intergenic 55.0%
CCGCCTTTCTCGTACATCTG+AGG + chr7_3:87385897-87385916 Msa1133680:three_prime_UTR 55.0%
GTTTCAGCCACGGGAGTGAT+TGG + chr7_3:87387033-87387052 Msa1133680:three_prime_UTR 55.0%
GCTTCGTCTTCCTCCGATCC+AGG + chr7_3:87383278-87383297 Msa1133680:CDS 60.0%
CTCCGATCCAGGCAAGTCTG+CGG + chr7_3:87383289-87383308 Msa1133680:CDS 60.0%
CTCCGCAGACTTGCCTGGAT+CGG - chr7_3:87383294-87383313 None:intergenic 60.0%
GATGTCTCCGCAGACTTGCC+TGG - chr7_3:87383299-87383318 None:intergenic 60.0%
GACATCAGAAGCAGTGGCGG+CGG + chr7_3:87383313-87383332 Msa1133680:CDS 60.0%
AAAATGCCTCCGTGTGCCGC+CGG + chr7_3:87383416-87383435 Msa1133680:CDS 60.0%
GATGGAGCTGCGTTTACCGG+CGG - chr7_3:87383435-87383454 None:intergenic 60.0%
CCTGGTGACACCACGGTAGA+TGG - chr7_3:87383453-87383472 None:intergenic 60.0%
!! CCATCTACCGTGGTGTCACC+AGG + chr7_3:87383450-87383469 Msa1133680:CDS 60.0%
CACACCTCCGCAAAGACGCA+AGG - chr7_3:87384655-87384674 None:intergenic 60.0%
CGGATGTCCAATCACTCCCG+TGG - chr7_3:87387043-87387062 None:intergenic 60.0%
CGCAGACTTGCCTGGATCGG+AGG - chr7_3:87383291-87383310 None:intergenic 65.0%
CTGCGTTTACCGGCGGCACA+CGG - chr7_3:87383428-87383447 None:intergenic 65.0%
! AAGGCGGCGGCAGGAAGCAT+GGG - chr7_3:87385884-87385903 None:intergenic 65.0%
AAAGGCGGCGGCAGGAAGCA+TGG - chr7_3:87385885-87385904 None:intergenic 65.0%
TGTACGAGAAAGGCGGCGGC+AGG - chr7_3:87385893-87385912 None:intergenic 65.0%
CGTTTACCGGCGGCACACGG+AGG - chr7_3:87383425-87383444 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 87383053 87387427 87383053 ID=Msa1133680;Name=Msa1133680
chr7_3 mRNA 87383053 87387427 87383053 ID=Msa1133680-mRNA-1;Parent=Msa1133680;Name=Msa1133680-mRNA-1;_AED=0.16;_eAED=0.16;_QI=222|1|1|1|0.85|0.87|8|1460|97
chr7_3 exon 87383053 87383471 87383053 ID=Msa1133680-mRNA-1:exon:26268;Parent=Msa1133680-mRNA-1
chr7_3 exon 87383742 87383955 87383742 ID=Msa1133680-mRNA-1:exon:26269;Parent=Msa1133680-mRNA-1
chr7_3 exon 87384075 87384163 87384075 ID=Msa1133680-mRNA-1:exon:26270;Parent=Msa1133680-mRNA-1
chr7_3 exon 87384596 87384669 87384596 ID=Msa1133680-mRNA-1:exon:26271;Parent=Msa1133680-mRNA-1
chr7_3 exon 87384738 87384788 87384738 ID=Msa1133680-mRNA-1:exon:26272;Parent=Msa1133680-mRNA-1
chr7_3 exon 87385051 87385112 87385051 ID=Msa1133680-mRNA-1:exon:26273;Parent=Msa1133680-mRNA-1
chr7_3 exon 87385282 87385918 87385282 ID=Msa1133680-mRNA-1:exon:26274;Parent=Msa1133680-mRNA-1
chr7_3 exon 87386998 87387427 87386998 ID=Msa1133680-mRNA-1:exon:26275;Parent=Msa1133680-mRNA-1
chr7_3 five_prime_UTR 87383053 87383274 87383053 ID=Msa1133680-mRNA-1:five_prime_utr;Parent=Msa1133680-mRNA-1
chr7_3 CDS 87383275 87383471 87383275 ID=Msa1133680-mRNA-1:cds;Parent=Msa1133680-mRNA-1
chr7_3 CDS 87383742 87383838 87383742 ID=Msa1133680-mRNA-1:cds;Parent=Msa1133680-mRNA-1
chr7_3 three_prime_UTR 87383839 87383955 87383839 ID=Msa1133680-mRNA-1:three_prime_utr;Parent=Msa1133680-mRNA-1
chr7_3 three_prime_UTR 87384075 87384163 87384075 ID=Msa1133680-mRNA-1:three_prime_utr;Parent=Msa1133680-mRNA-1
chr7_3 three_prime_UTR 87384596 87384669 87384596 ID=Msa1133680-mRNA-1:three_prime_utr;Parent=Msa1133680-mRNA-1
chr7_3 three_prime_UTR 87384738 87384788 87384738 ID=Msa1133680-mRNA-1:three_prime_utr;Parent=Msa1133680-mRNA-1
chr7_3 three_prime_UTR 87385051 87385112 87385051 ID=Msa1133680-mRNA-1:three_prime_utr;Parent=Msa1133680-mRNA-1
chr7_3 three_prime_UTR 87385282 87385918 87385282 ID=Msa1133680-mRNA-1:three_prime_utr;Parent=Msa1133680-mRNA-1
chr7_3 three_prime_UTR 87386998 87387427 87386998 ID=Msa1133680-mRNA-1:three_prime_utr;Parent=Msa1133680-mRNA-1
Gene Sequence

>Msa1133680

ATGGCTTCGTCTTCCTCCGATCCAGGCAAGTCTGCGGAGACATCAGAAGCAGTGGCGGCGGCGAATGATCAGCTTTTACTGTACAGAGGATTGAAGAAAGCGAAGAAAGAGAGAGGTTGTACTGCTAAAGAACGAATCAGTAAAATGCCTCCGTGTGCCGCCGGTAAACGCAGCTCCATCTACCGTGGTGTCACCAGGCATAGATGGACTGGTCGTTATGAAGCGCATCTATGGGATAAAAGTACATGGAATCAAAATCAGAATAAGAAAGGAAAACAAGGTTTGGACTGTTGA
Protein sequence

>Msa1133680

MASSSSDPGKSAETSEAVAAANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGLDC*