Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0733080 | XP_003615390.1 | 96.176 | 340 | 13 | 0 | 1 | 340 | 1 | 340 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0733080 | sp|Q38826|IAA8_ARATH | 55.455 | 330 | 108 | 13 | 20 | 340 | 13 | 312 | 4.91e-101 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0733080 | G7K618 | 96.176 | 340 | 13 | 0 | 1 | 340 | 1 | 340 | 0.0 | 645 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0733080 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014770 | Msa0733080 | 0.802773 | 4.785802e-49 | -8.615850e-47 |
| Msa0033220 | Msa0733080 | 0.817787 | 2.750499e-52 | -8.615850e-47 |
| Msa0037680 | Msa0733080 | 0.800925 | 1.146336e-48 | -8.615850e-47 |
| Msa0040790 | Msa0733080 | 0.811404 | 7.119666e-51 | -8.615850e-47 |
| Msa0077340 | Msa0733080 | 0.814591 | 1.425084e-51 | -8.615850e-47 |
| Msa0077560 | Msa0733080 | 0.809334 | 1.992008e-50 | -8.615850e-47 |
| Msa0079880 | Msa0733080 | 0.811004 | 8.697546e-51 | -8.615850e-47 |
| Msa0080030 | Msa0733080 | 0.801032 | 1.090177e-48 | -8.615850e-47 |
| Msa0102240 | Msa0733080 | 0.800028 | 1.746042e-48 | -8.615850e-47 |
| Msa0652770 | Msa0733080 | 0.853848 | 1.821168e-61 | -8.615850e-47 |
| Msa0693330 | Msa0733080 | 0.825332 | 4.965918e-54 | -8.615850e-47 |
| Msa0703950 | Msa0733080 | 0.864400 | 1.249460e-64 | -8.615850e-47 |
| Msa0719270 | Msa0733080 | 0.808540 | 2.945028e-50 | -8.615850e-47 |
| Msa0733080 | Msa0745140 | 0.801490 | 8.786616e-49 | -8.615850e-47 |
| Msa0733080 | Msa0776640 | 0.802883 | 4.541102e-49 | -8.615850e-47 |
| Msa0733080 | Msa0795750 | 0.816120 | 6.512686e-52 | -8.615850e-47 |
| Msa0733080 | Msa0811690 | 0.841080 | 5.903091e-58 | -8.615850e-47 |
| Msa0733080 | Msa0831740 | 0.806883 | 6.624129e-50 | -8.615850e-47 |
| Msa0733080 | Msa0840520 | 0.800241 | 1.580421e-48 | -8.615850e-47 |
| Msa0733080 | Msa0851850 | 0.866289 | 3.178148e-65 | -8.615850e-47 |
| Msa0733080 | Msa0865420 | 0.808155 | 3.558709e-50 | -8.615850e-47 |
| Msa0733080 | Msa0945190 | 0.846141 | 2.616380e-59 | -8.615850e-47 |
| Msa0733080 | Msa1041710 | 0.808884 | 2.486812e-50 | -8.615850e-47 |
| Msa0733080 | Msa1042160 | 0.821702 | 3.508401e-53 | -8.615850e-47 |
| Msa0733080 | Msa1042190 | 0.819609 | 1.061605e-52 | -8.615850e-47 |
| Msa0733080 | Msa1044680 | 0.814880 | 1.229645e-51 | -8.615850e-47 |
| Msa0733080 | Msa1072940 | 0.804236 | 2.380310e-49 | -8.615850e-47 |
| Msa0733080 | Msa1077990 | 0.807263 | 5.504842e-50 | -8.615850e-47 |
| Msa0733080 | Msa1080000 | 0.834663 | 2.630896e-56 | -8.615850e-47 |
| Msa0733080 | Msa1105640 | 0.804711 | 1.894951e-49 | -8.615850e-47 |
| Msa0733080 | Msa1106590 | 0.847149 | 1.388017e-59 | -8.615850e-47 |
| Msa0733080 | Msa1167470 | 0.822404 | 2.412268e-53 | -8.615850e-47 |
| Msa0733080 | Msa1213040 | 0.808314 | 3.291952e-50 | -8.615850e-47 |
| Msa0733080 | Msa1260220 | 0.803222 | 3.864844e-49 | -8.615850e-47 |
| Msa0733080 | Msa1268240 | 0.802936 | 4.427363e-49 | -8.615850e-47 |
| Msa0733080 | Msa1349690 | 0.809547 | 1.792972e-50 | -8.615850e-47 |
| Msa0733080 | Msa1368390 | 0.800038 | 1.738337e-48 | -8.615850e-47 |
| Msa0733080 | Msa1392740 | 0.803911 | 2.780371e-49 | -8.615850e-47 |
| Msa0733080 | Msa1393780 | 0.800011 | 1.760508e-48 | -8.615850e-47 |
| Msa0733080 | Msa1405460 | 0.803409 | 3.533753e-49 | -8.615850e-47 |
| Msa0733080 | Msa1407840 | 0.892620 | 1.341951e-74 | -8.615850e-47 |
| Msa0733080 | Msa1412000 | 0.844077 | 9.448863e-59 | -8.615850e-47 |
| Msa0733080 | Msa1422860 | 0.805475 | 1.311008e-49 | -8.615850e-47 |
| Msa0733080 | Msa1427110 | 0.813857 | 2.070145e-51 | -8.615850e-47 |
| Msa0733080 | Msa1431260 | 0.826787 | 2.239276e-54 | -8.615850e-47 |
| Msa0733080 | Msa1437810 | 0.892573 | 1.400955e-74 | -8.615850e-47 |
| Msa0733080 | Msa1454500 | 0.893619 | 5.310816e-75 | -8.615850e-47 |
| Msa0124910 | Msa0733080 | 0.811514 | 6.740285e-51 | -8.615850e-47 |
| Msa0203080 | Msa0733080 | 0.816746 | 4.716607e-52 | -8.615850e-47 |
| Msa0209140 | Msa0733080 | 0.800986 | 1.114143e-48 | -8.615850e-47 |
| Msa0369790 | Msa0733080 | 0.803543 | 3.315384e-49 | -8.615850e-47 |
| Msa0375640 | Msa0733080 | 0.819198 | 1.317132e-52 | -8.615850e-47 |
| Msa0412790 | Msa0733080 | 0.848694 | 5.206028e-60 | -8.615850e-47 |
| Msa0424160 | Msa0733080 | 0.825235 | 5.234933e-54 | -8.615850e-47 |
| Msa0457570 | Msa0733080 | 0.805324 | 1.410509e-49 | -8.615850e-47 |
| Msa0464000 | Msa0733080 | 0.806879 | 6.639576e-50 | -8.615850e-47 |
| Msa0284800 | Msa0733080 | 0.817233 | 3.667968e-52 | -8.615850e-47 |
| Msa0288620 | Msa0733080 | 0.819058 | 1.417243e-52 | -8.615850e-47 |
| Msa0307270 | Msa0733080 | 0.808764 | 2.638210e-50 | -8.615850e-47 |
| Msa0307670 | Msa0733080 | 0.806720 | 7.172738e-50 | -8.615850e-47 |
| Msa0326710 | Msa0733080 | 0.817577 | 3.068170e-52 | -8.615850e-47 |
| Msa0330520 | Msa0733080 | 0.845640 | 3.580264e-59 | -8.615850e-47 |
| Msa0509550 | Msa0733080 | 0.803247 | 3.818651e-49 | -8.615850e-47 |
| Msa0515800 | Msa0733080 | 0.802943 | 4.412574e-49 | -8.615850e-47 |
| Msa0519760 | Msa0733080 | 0.828198 | 1.026968e-54 | -8.615850e-47 |
| Msa0519810 | Msa0733080 | 0.801243 | 9.869169e-49 | -8.615850e-47 |
| Msa0519840 | Msa0733080 | 0.822692 | 2.067773e-53 | -8.615850e-47 |
| Msa0529030 | Msa0733080 | 0.801226 | 9.949257e-49 | -8.615850e-47 |
| Msa0567610 | Msa0733080 | 0.857227 | 1.884401e-62 | -8.615850e-47 |
| Msa0579160 | Msa0733080 | 0.812710 | 3.697131e-51 | -8.615850e-47 |
| Msa0579220 | Msa0733080 | 0.812798 | 3.536413e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0733080 | MtrunA17_Chr5g0428141 | 96.176 | 340 | 13 | 0 | 1 | 340 | 1 | 340 | 0.0 | 645 |
| Msa0733080 | MtrunA17_Chr8g0366881 | 62.102 | 314 | 104 | 9 | 32 | 340 | 38 | 341 | 4.63e-124 | 363 |
| Msa0733080 | MtrunA17_Chr5g0411501 | 61.129 | 319 | 102 | 9 | 33 | 340 | 21 | 328 | 8.24e-119 | 349 |
| Msa0733080 | MtrunA17_Chr2g0331411 | 48.246 | 342 | 123 | 12 | 29 | 340 | 2 | 319 | 2.73e-82 | 255 |
| Msa0733080 | MtrunA17_Chr6g0486121 | 51.389 | 288 | 89 | 9 | 57 | 340 | 7 | 247 | 1.73e-79 | 246 |
| Msa0733080 | MtrunA17_Chr8g0390281 | 46.130 | 323 | 104 | 10 | 50 | 340 | 2 | 286 | 1.82e-74 | 234 |
| Msa0733080 | MtrunA17_Chr1g0190711 | 63.291 | 158 | 53 | 3 | 188 | 340 | 89 | 246 | 9.22e-62 | 200 |
| Msa0733080 | MtrunA17_Chr7g0260641 | 64.238 | 151 | 52 | 2 | 191 | 340 | 94 | 243 | 3.93e-61 | 198 |
| Msa0733080 | MtrunA17_Chr1g0184791 | 62.581 | 155 | 53 | 4 | 191 | 340 | 84 | 238 | 7.06e-60 | 195 |
| Msa0733080 | MtrunA17_Chr1g0187921 | 60.526 | 152 | 58 | 2 | 191 | 340 | 78 | 229 | 1.95e-58 | 191 |
| Msa0733080 | MtrunA17_Chr1g0184801 | 55.621 | 169 | 47 | 5 | 175 | 337 | 57 | 203 | 8.81e-50 | 167 |
| Msa0733080 | MtrunA17_Chr1g0166011 | 52.469 | 162 | 53 | 4 | 175 | 336 | 46 | 183 | 3.50e-47 | 160 |
| Msa0733080 | MtrunA17_Chr7g0260621 | 38.267 | 277 | 91 | 5 | 60 | 336 | 6 | 202 | 8.81e-47 | 159 |
| Msa0733080 | MtrunA17_Chr1g0187961 | 53.503 | 157 | 46 | 6 | 180 | 335 | 48 | 178 | 1.03e-45 | 155 |
| Msa0733080 | MtrunA17_Chr4g0004181 | 48.718 | 156 | 50 | 4 | 194 | 349 | 52 | 177 | 1.38e-35 | 129 |
| Msa0733080 | MtrunA17_Chr1g0183251 | 42.373 | 177 | 67 | 5 | 195 | 336 | 81 | 257 | 2.66e-32 | 123 |
| Msa0733080 | MtrunA17_Chr2g0332141 | 54.128 | 109 | 40 | 4 | 232 | 336 | 8 | 110 | 1.15e-31 | 117 |
| Msa0733080 | MtrunA17_Chr2g0330951 | 40.437 | 183 | 77 | 6 | 182 | 337 | 85 | 262 | 5.16e-31 | 119 |
| Msa0733080 | MtrunA17_Chr8g0340731 | 41.279 | 172 | 83 | 4 | 178 | 331 | 89 | 260 | 1.00e-30 | 119 |
| Msa0733080 | MtrunA17_Chr4g0069561 | 33.987 | 153 | 71 | 6 | 186 | 332 | 56 | 184 | 1.01e-18 | 83.6 |
| Msa0733080 | MtrunA17_Chr1g0193861 | 40.741 | 108 | 48 | 3 | 230 | 335 | 83 | 176 | 6.06e-17 | 78.2 |
| Msa0733080 | MtrunA17_Chr3g0137601 | 31.469 | 143 | 72 | 5 | 196 | 332 | 88 | 210 | 3.39e-16 | 77.0 |
| Msa0733080 | MtrunA17_Chr7g0270851 | 38.384 | 99 | 50 | 2 | 230 | 328 | 68 | 155 | 2.62e-15 | 73.2 |
| Msa0733080 | MtrunA17_Chr1g0209181 | 31.690 | 142 | 80 | 3 | 187 | 328 | 44 | 168 | 3.07e-15 | 73.6 |
| Msa0733080 | MtrunA17_Chr4g0064131 | 31.159 | 138 | 66 | 6 | 197 | 329 | 93 | 206 | 2.78e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0733080 | AT2G22670.5 | 56.825 | 315 | 102 | 12 | 32 | 337 | 20 | 309 | 1.30e-102 | 308 |
| Msa0733080 | AT2G22670.2 | 56.825 | 315 | 102 | 12 | 32 | 337 | 20 | 309 | 1.30e-102 | 308 |
| Msa0733080 | AT2G22670.3 | 55.455 | 330 | 108 | 13 | 20 | 340 | 13 | 312 | 5.00e-102 | 306 |
| Msa0733080 | AT2G22670.1 | 55.455 | 330 | 108 | 13 | 20 | 340 | 13 | 312 | 5.00e-102 | 306 |
| Msa0733080 | AT2G22670.4 | 56.289 | 318 | 105 | 12 | 32 | 340 | 37 | 329 | 9.92e-102 | 306 |
| Msa0733080 | AT5G65670.2 | 55.591 | 313 | 120 | 8 | 32 | 340 | 32 | 329 | 3.57e-101 | 305 |
| Msa0733080 | AT5G65670.1 | 55.806 | 310 | 118 | 8 | 32 | 337 | 32 | 326 | 7.22e-101 | 304 |
| Msa0733080 | AT4G29080.1 | 47.302 | 315 | 127 | 7 | 33 | 336 | 8 | 294 | 5.33e-79 | 246 |
| Msa0733080 | AT4G14550.2 | 44.322 | 273 | 95 | 8 | 65 | 336 | 1 | 217 | 1.07e-59 | 194 |
| Msa0733080 | AT4G14550.1 | 43.682 | 277 | 99 | 8 | 65 | 340 | 1 | 221 | 2.40e-59 | 193 |
| Msa0733080 | AT1G04250.1 | 40.214 | 281 | 98 | 6 | 65 | 340 | 7 | 222 | 3.25e-57 | 188 |
| Msa0733080 | AT3G04730.1 | 41.924 | 291 | 91 | 8 | 65 | 340 | 2 | 229 | 5.01e-56 | 185 |
| Msa0733080 | AT3G23050.1 | 43.007 | 286 | 97 | 9 | 65 | 340 | 6 | 235 | 5.62e-56 | 185 |
| Msa0733080 | AT1G04240.1 | 53.846 | 156 | 54 | 4 | 182 | 337 | 50 | 187 | 7.33e-49 | 165 |
| Msa0733080 | AT1G04240.2 | 53.846 | 156 | 54 | 4 | 182 | 337 | 150 | 287 | 7.24e-48 | 165 |
| Msa0733080 | AT4G14550.3 | 42.231 | 251 | 88 | 8 | 65 | 314 | 1 | 195 | 1.59e-46 | 159 |
| Msa0733080 | AT5G43700.1 | 51.266 | 158 | 57 | 3 | 183 | 340 | 49 | 186 | 4.43e-46 | 157 |
| Msa0733080 | AT3G23050.2 | 41.762 | 261 | 86 | 9 | 65 | 315 | 6 | 210 | 1.34e-43 | 152 |
| Msa0733080 | AT3G23030.1 | 48.980 | 147 | 46 | 2 | 189 | 335 | 53 | 170 | 3.83e-40 | 141 |
| Msa0733080 | AT3G23030.2 | 48.980 | 147 | 46 | 2 | 189 | 335 | 140 | 257 | 2.26e-39 | 142 |
| Msa0733080 | AT3G15540.1 | 49.664 | 149 | 52 | 4 | 190 | 337 | 64 | 190 | 7.85e-39 | 139 |
| Msa0733080 | AT1G52830.1 | 45.695 | 151 | 57 | 4 | 187 | 337 | 61 | 186 | 1.41e-38 | 138 |
| Msa0733080 | AT2G33310.2 | 43.956 | 182 | 66 | 6 | 182 | 337 | 62 | 233 | 2.34e-36 | 134 |
| Msa0733080 | AT4G28640.3 | 46.914 | 162 | 66 | 4 | 192 | 336 | 84 | 242 | 1.11e-35 | 132 |
| Msa0733080 | AT4G28640.1 | 46.875 | 160 | 65 | 4 | 192 | 334 | 84 | 240 | 1.99e-35 | 131 |
| Msa0733080 | AT2G33310.3 | 43.956 | 182 | 65 | 7 | 182 | 337 | 62 | 232 | 1.01e-34 | 129 |
| Msa0733080 | AT2G33310.1 | 43.956 | 182 | 65 | 7 | 182 | 337 | 62 | 232 | 1.01e-34 | 129 |
| Msa0733080 | AT1G15580.1 | 39.665 | 179 | 72 | 4 | 158 | 330 | 11 | 159 | 1.06e-34 | 127 |
| Msa0733080 | AT4G28640.2 | 46.012 | 163 | 68 | 4 | 189 | 334 | 81 | 240 | 1.18e-34 | 130 |
| Msa0733080 | AT4G14560.1 | 49.655 | 145 | 46 | 3 | 188 | 332 | 47 | 164 | 1.28e-33 | 124 |
| Msa0733080 | AT1G04550.2 | 41.758 | 182 | 77 | 4 | 175 | 335 | 50 | 223 | 5.54e-32 | 122 |
| Msa0733080 | AT1G04100.1 | 40.230 | 174 | 71 | 5 | 193 | 336 | 90 | 260 | 5.09e-31 | 120 |
| Msa0733080 | AT3G16500.2 | 39.205 | 176 | 77 | 5 | 185 | 331 | 78 | 252 | 7.66e-30 | 117 |
| Msa0733080 | AT3G16500.1 | 39.205 | 176 | 77 | 5 | 185 | 331 | 78 | 252 | 7.79e-30 | 117 |
| Msa0733080 | AT1G51950.1 | 37.647 | 170 | 85 | 4 | 182 | 331 | 82 | 250 | 7.84e-29 | 114 |
| Msa0733080 | AT4G14550.4 | 37.198 | 207 | 74 | 6 | 65 | 271 | 1 | 151 | 2.00e-26 | 105 |
| Msa0733080 | AT5G25890.1 | 36.145 | 166 | 86 | 3 | 170 | 335 | 22 | 167 | 9.33e-25 | 100 |
| Msa0733080 | AT3G17600.1 | 39.375 | 160 | 68 | 8 | 175 | 328 | 18 | 154 | 1.56e-23 | 96.7 |
| Msa0733080 | AT3G23050.3 | 37.500 | 216 | 70 | 8 | 65 | 271 | 6 | 165 | 4.96e-23 | 95.5 |
| Msa0733080 | AT2G46990.1 | 40.196 | 102 | 49 | 1 | 229 | 330 | 83 | 172 | 3.35e-19 | 85.1 |
| Msa0733080 | AT3G62100.1 | 39.604 | 101 | 49 | 1 | 229 | 329 | 81 | 169 | 7.02e-19 | 84.0 |
| Msa0733080 | AT1G15050.2 | 37.255 | 102 | 51 | 1 | 232 | 333 | 62 | 150 | 8.04e-14 | 69.3 |
| Msa0733080 | AT3G62100.2 | 39.080 | 87 | 41 | 1 | 229 | 315 | 81 | 155 | 9.92e-14 | 68.9 |
| Msa0733080 | AT2G46990.2 | 39.080 | 87 | 41 | 1 | 229 | 315 | 83 | 157 | 1.46e-13 | 68.6 |
| Msa0733080 | AT1G15050.1 | 37.255 | 102 | 51 | 1 | 232 | 333 | 94 | 182 | 1.93e-13 | 68.9 |
| Msa0733080 | AT2G01200.2 | 34.906 | 106 | 56 | 1 | 228 | 333 | 96 | 188 | 8.61e-13 | 67.4 |
| Msa0733080 | AT2G01200.1 | 34.906 | 106 | 56 | 1 | 228 | 333 | 96 | 188 | 8.61e-13 | 67.4 |
| Msa0733080 | AT4G32280.2 | 32.653 | 98 | 49 | 2 | 231 | 328 | 118 | 198 | 4.48e-12 | 65.5 |
| Msa0733080 | AT4G32280.1 | 24.848 | 165 | 76 | 4 | 195 | 328 | 93 | 240 | 6.28e-12 | 65.9 |
Find 99 sgRNAs with CRISPR-Local
Find 415 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGAGGTTGATGGAAAAT+TGG | 0.178401 | 5_1:+46048150 | Msa0733080:CDS |
| GGCAACATTCTCAAGCATTT+TGG | 0.180467 | 5_1:-46047541 | None:intergenic |
| GTGAGAGAGTTTAGAGGTTT+TGG | 0.192375 | 5_1:-46046330 | None:intergenic |
| AAATCTGATGAATCTCTTTC+AGG | 0.213261 | 5_1:-46047134 | None:intergenic |
| GAATATCCGTGGAGGTCTTT+TGG | 0.230448 | 5_1:-46053436 | None:intergenic |
| AGGGTTTCACTTTATATAAA+AGG | 0.235739 | 5_1:-46053571 | None:intergenic |
| CTTTATATAAAAGGGTAAAA+TGG | 0.237752 | 5_1:-46053562 | None:intergenic |
| TTTGATCTTGCTCATTCTTC+AGG | 0.260580 | 5_1:+46046378 | Msa0733080:five_prime_UTR |
| CCCATGTAGTTGAACTCTTT+TGG | 0.273911 | 5_1:-46046981 | None:intergenic |
| TTTAAGATTCAAATTACTTT+TGG | 0.274939 | 5_1:-46047072 | None:intergenic |
| GGTATAAATGTAAAGGGTAT+AGG | 0.305065 | 5_1:-46053512 | None:intergenic |
| AGAGAAGTGAGAGAGTTTAG+AGG | 0.313974 | 5_1:-46046336 | None:intergenic |
| GAAAGCAAACCAAGTCTTAA+TGG | 0.318890 | 5_1:+46047633 | Msa0733080:CDS |
| TGCTTGTGGGTGATGTTCCC+TGG | 0.320651 | 5_1:+46048524 | Msa0733080:CDS |
| GACAGTTTAGGTAAAATGTT+GGG | 0.336184 | 5_1:-46053540 | None:intergenic |
| AGCTCTGATGCCATTGGTTT+AGG | 0.336962 | 5_1:+46049562 | Msa0733080:CDS |
| TAAAGCTACTGAACTTAGAT+TGG | 0.345821 | 5_1:+46047091 | Msa0733080:CDS |
| GAACTTAGATTGGGACTTCC+AGG | 0.346391 | 5_1:+46047101 | Msa0733080:CDS |
| CATTTGTCACAAACATAAAC+TGG | 0.367046 | 5_1:-46046258 | None:intergenic |
| CTTAATGGTTCTGCAACTAA+TGG | 0.371208 | 5_1:+46047648 | Msa0733080:CDS |
| ATCCACTGATGAACAATTAG+AGG | 0.372614 | 5_1:-46047012 | None:intergenic |
| TACCTCTGAGAAAACATTCA+TGG | 0.380080 | 5_1:-46047279 | None:intergenic |
| GGGGCCCTTTCTGATGGGCT+AGG | 0.382775 | 5_1:-46053415 | None:intergenic |
| AGTTAGAAGAAGATCTTATG+AGG | 0.400559 | 5_1:+46053479 | Msa0733080:CDS |
| CCCTTTCTGATGGGCTAGGT+TGG | 0.402246 | 5_1:-46053411 | None:intergenic |
| CTTTCAGGAGAAAGTGATCC+TGG | 0.402526 | 5_1:-46047119 | None:intergenic |
| CAGTTTATGTTTGTGACAAA+TGG | 0.405511 | 5_1:+46046259 | Msa0733080:five_prime_UTR |
| GAAGAGGTTGATGGAAAATT+GGG | 0.409009 | 5_1:+46048151 | Msa0733080:CDS |
| TGTGGCAGGGCACAGGTTGT+TGG | 0.411315 | 5_1:+46048070 | Msa0733080:intron |
| AGAATATGTTATTACTTATG+AGG | 0.411394 | 5_1:+46048483 | Msa0733080:CDS |
| AAGGGTAAAATGGACAGTTT+AGG | 0.412829 | 5_1:-46053552 | None:intergenic |
| TTCATTGTTCTTTGAAGCAG+TGG | 0.422775 | 5_1:-46048131 | None:intergenic |
| AAAATGCTTGAGAATGTTGC+CGG | 0.428584 | 5_1:+46047543 | Msa0733080:CDS |
| AAGCTGAGGGATCTGCTTCA+TGG | 0.432732 | 5_1:+46048457 | Msa0733080:CDS |
| GGACAGTTTAGGTAAAATGT+TGG | 0.445576 | 5_1:-46053541 | None:intergenic |
| GTATAAATGTAAAGGGTATA+GGG | 0.446069 | 5_1:-46053511 | None:intergenic |
| GGGTTTCACTTTATATAAAA+GGG | 0.447646 | 5_1:-46053570 | None:intergenic |
| GGCCTCCAATAAGATCGTTT+AGG | 0.457342 | 5_1:+46048095 | Msa0733080:CDS |
| AAGAACAATGAAGAGGTTGA+TGG | 0.459868 | 5_1:+46048142 | Msa0733080:CDS |
| ATTGGTCTTGAGAGGCCTAA+TGG | 0.460399 | 5_1:+46047603 | Msa0733080:CDS |
| TAGGTAAAATGTTGGGGTGA+GGG | 0.463642 | 5_1:-46053533 | None:intergenic |
| CTTAACTGTTGCTATTTCAT+CGG | 0.466939 | 5_1:-46047580 | None:intergenic |
| TCATCACCTATTCCTAGCCT+TGG | 0.471158 | 5_1:-46046900 | None:intergenic |
| GCAGGGCACAGGTTGTTGGT+TGG | 0.475629 | 5_1:+46048074 | Msa0733080:intron |
| GAAATAGCAACAGTTAAGAT+TGG | 0.476375 | 5_1:+46047585 | Msa0733080:CDS |
| TTAGGTAAAATGTTGGGGTG+AGG | 0.479189 | 5_1:-46053534 | None:intergenic |
| TCTCTACCAAGGCTAGGAAT+AGG | 0.484039 | 5_1:+46046894 | Msa0733080:CDS |
| TTGCTTTCACCGACACCATT+AGG | 0.485059 | 5_1:-46047618 | None:intergenic |
| TTCCTAAACGATCTTATTGG+AGG | 0.485580 | 5_1:-46048097 | None:intergenic |
| GTTGATGGAAAATTGGGATC+AGG | 0.490761 | 5_1:+46048157 | Msa0733080:CDS |
| GTTAGAAGAAGATCTTATGA+GGG | 0.490860 | 5_1:+46053480 | Msa0733080:CDS |
| AAAGCTACTGAACTTAGATT+GGG | 0.491159 | 5_1:+46047092 | Msa0733080:CDS |
| ATTACTTATGAGGATAAAGA+TGG | 0.497598 | 5_1:+46048493 | Msa0733080:CDS |
| ACCAAAAGAGTTCAACTACA+TGG | 0.503124 | 5_1:+46046980 | Msa0733080:CDS |
| AGGAGGGTGAAGACGTAGTG+TGG | 0.505550 | 5_1:+46053374 | Msa0733080:CDS |
| GCTTGTGGGTGATGTTCCCT+GGG | 0.507108 | 5_1:+46048525 | Msa0733080:CDS |
| GGGTGAGGGTATAAATGTAA+AGG | 0.510271 | 5_1:-46053519 | None:intergenic |
| ATGAGGATAAAGATGGTGAT+TGG | 0.518002 | 5_1:+46048500 | Msa0733080:CDS |
| ATGAAGAGCTCTGATGCCAT+TGG | 0.522246 | 5_1:+46049556 | Msa0733080:CDS |
| ATGTTCAGCTGTTTCACCAT+AGG | 0.526626 | 5_1:+46048286 | Msa0733080:CDS |
| TCCAACCTAGCCCATCAGAA+AGG | 0.527148 | 5_1:+46053410 | Msa0733080:CDS |
| TTTATGTTTGTGACAAATGG+AGG | 0.527357 | 5_1:+46046262 | Msa0733080:five_prime_UTR |
| AATCTTGTGTGGCAGGGCAC+AGG | 0.532182 | 5_1:+46048063 | Msa0733080:intron |
| CACCCTACTTACTTGCTAGC+AGG | 0.532961 | 5_1:-46047684 | None:intergenic |
| GATGGTGATTGGATGCTTGT+GGG | 0.535428 | 5_1:+46048511 | Msa0733080:CDS |
| CTGATGGGCTAGGTTGGACG+AGG | 0.537957 | 5_1:-46053405 | None:intergenic |
| TTTGTGAAGGTCAGCATGGA+TGG | 0.538161 | 5_1:+46048190 | Msa0733080:CDS |
| ATCGGCTTTCACTTTCTGCC+CGG | 0.540054 | 5_1:-46047562 | None:intergenic |
| GGATGTTTATTGATACATGC+AGG | 0.544403 | 5_1:+46049521 | Msa0733080:intron |
| GGTGAGGGTATAAATGTAAA+GGG | 0.546037 | 5_1:-46053518 | None:intergenic |
| TCAGGTCAATGTGAATCTCA+TGG | 0.548741 | 5_1:+46048412 | Msa0733080:intron |
| ATATTCTACACGGACGAATG+AGG | 0.553030 | 5_1:+46053453 | Msa0733080:CDS |
| GTGAAGACGTAGTGTGGAGA+AGG | 0.560977 | 5_1:+46053380 | Msa0733080:CDS |
| CAGTTAAGATTGGTCTTGAG+AGG | 0.564900 | 5_1:+46047595 | Msa0733080:CDS |
| GTTGCAGAACCATTAAGACT+TGG | 0.566322 | 5_1:-46047642 | None:intergenic |
| CCAACCTAGCCCATCAGAAA+GGG | 0.566606 | 5_1:+46053411 | Msa0733080:CDS |
| ATGAAGCAGATCCCTCAGCT+TGG | 0.567500 | 5_1:-46048455 | None:intergenic |
| AGATGGTGATTGGATGCTTG+TGG | 0.576179 | 5_1:+46048510 | Msa0733080:CDS |
| ATCCTCTAATTGTTCATCAG+TGG | 0.580106 | 5_1:+46047010 | Msa0733080:CDS |
| GTGATGTCTCTACCAAGGCT+AGG | 0.589347 | 5_1:+46046888 | Msa0733080:exon |
| AAATGCTTGAGAATGTTGCC+GGG | 0.605417 | 5_1:+46047544 | Msa0733080:CDS |
| GGAATACTAACCTAAACCAA+TGG | 0.612277 | 5_1:-46049572 | None:intergenic |
| CCAAAAGAGTTCAACTACAT+GGG | 0.615578 | 5_1:+46046981 | Msa0733080:CDS |
| GTGGATGCTCTAAGCAGCAA+AGG | 0.617589 | 5_1:+46053328 | Msa0733080:CDS |
| TGCTTCAAAGAACAATGAAG+AGG | 0.621204 | 5_1:+46048135 | Msa0733080:CDS |
| TGCTGAATGAAACCAAGCTG+AGG | 0.622855 | 5_1:+46048443 | Msa0733080:CDS |
| GCTGAATGAAACCAAGCTGA+GGG | 0.626284 | 5_1:+46048444 | Msa0733080:CDS |
| AGTACATAAACTTACTCCCA+GGG | 0.630905 | 5_1:-46048541 | None:intergenic |
| GATGGAAAATTGGGATCAGG+AGG | 0.633939 | 5_1:+46048160 | Msa0733080:CDS |
| CTTGAGAGGCCTAATGGTGT+CGG | 0.641657 | 5_1:+46047609 | Msa0733080:CDS |
| ACAGTTTAGGTAAAATGTTG+GGG | 0.642198 | 5_1:-46053539 | None:intergenic |
| AGGAGGTGCTGTGTTTGTGA+AGG | 0.651647 | 5_1:+46048177 | Msa0733080:CDS |
| TCATTGTGATGTCTCTACCA+AGG | 0.666331 | 5_1:+46046883 | Msa0733080:exon |
| TGTGTTTGTGAAGGTCAGCA+TGG | 0.667221 | 5_1:+46048186 | Msa0733080:CDS |
| TCGTCCGTGTAGAATATCCG+TGG | 0.670903 | 5_1:-46053447 | None:intergenic |
| TGTTTATTGATACATGCAGG+AGG | 0.676885 | 5_1:+46049524 | Msa0733080:CDS |
| AGGGCCCCAAAAGACCTCCA+CGG | 0.682253 | 5_1:+46053430 | Msa0733080:CDS |
| ACCTCCACGGATATTCTACA+CGG | 0.700771 | 5_1:+46053443 | Msa0733080:CDS |
| TCCGTGTAGAATATCCGTGG+AGG | 0.705798 | 5_1:-46053444 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATCAAAAATAGAAAT+TGG | - | chr5_1:46049723-46049742 | None:intergenic | 10.0% |
| !! | TTTATATCTTTATGCTAAAA+TGG | + | chr5_1:46046558-46046577 | Msa0733080:intron | 15.0% |
| !!! | TCTTTAAAAGATTGAATTTT+TGG | - | chr5_1:46047047-46047066 | None:intergenic | 15.0% |
| !!! | TTTAAGATTCAAATTACTTT+TGG | - | chr5_1:46047075-46047094 | None:intergenic | 15.0% |
| !!! | AAAAACTGTTTAACTTAATA+TGG | + | chr5_1:46050070-46050089 | Msa0733080:intron | 15.0% |
| !!! | AATAGACAAATTCATATTTT+AGG | + | chr5_1:46050513-46050532 | Msa0733080:intron | 15.0% |
| !! | ATATAGACATGAATTTAAAT+TGG | + | chr5_1:46051120-46051139 | Msa0733080:intron | 15.0% |
| !!! | TAACAAAAGTTTTTAAATCT+AGG | + | chr5_1:46051551-46051570 | Msa0733080:intron | 15.0% |
| !!! | AACAAAAGTTTTTAAATCTA+GGG | + | chr5_1:46051552-46051571 | Msa0733080:intron | 15.0% |
| !!! | TATATTTAATTTTAGATGAC+TGG | + | chr5_1:46051714-46051733 | Msa0733080:intron | 15.0% |
| !! | CAATGTATTATTAATTTCTA+CGG | - | chr5_1:46051864-46051883 | None:intergenic | 15.0% |
| !! | GTATAAATATTGTGAAAAAT+AGG | - | chr5_1:46052155-46052174 | None:intergenic | 15.0% |
| !!! | TTTTTACATTTCAACTTAAA+CGG | + | chr5_1:46052358-46052377 | Msa0733080:intron | 15.0% |
| !! | TTACACAATTTAAATATCTT+GGG | - | chr5_1:46052492-46052511 | None:intergenic | 15.0% |
| !!! | TTATCTTTTTACATTAGTTT+TGG | - | chr5_1:46052752-46052771 | None:intergenic | 15.0% |
| !! | AAAACTAATGTAAAAAGATA+AGG | + | chr5_1:46052751-46052770 | Msa0733080:intron | 15.0% |
| !! | AAACTAATGTAAAAAGATAA+GGG | + | chr5_1:46052752-46052771 | Msa0733080:intron | 15.0% |
| !!! | TGTTTTTTTTTTTCATAACA+AGG | - | chr5_1:46052801-46052820 | None:intergenic | 15.0% |
| !! | AAGTATCAATTTCTATGAAA+TGG | + | chr5_1:46046513-46046532 | Msa0733080:intron | 20.0% |
| !! | AGTATCAATTTCTATGAAAT+GGG | + | chr5_1:46046514-46046533 | Msa0733080:intron | 20.0% |
| !!! | TTTTTCAATGTTTTTGGTTA+AGG | + | chr5_1:46046783-46046802 | Msa0733080:intron | 20.0% |
| !!! | AAATGTTGTTCTTTTTTCAT+AGG | + | chr5_1:46046815-46046834 | Msa0733080:intron | 20.0% |
| !!! | AATGTTGTTCTTTTTTCATA+GGG | + | chr5_1:46046816-46046835 | Msa0733080:intron | 20.0% |
| !!! | TAAAAACAATGTTACTTTGT+TGG | + | chr5_1:46046929-46046948 | Msa0733080:CDS | 20.0% |
| !! | TTTATATTGCAGTTAAAATG+TGG | + | chr5_1:46047366-46047385 | Msa0733080:intron | 20.0% |
| !! | AAATCACAAAAATTGAAATG+CGG | - | chr5_1:46047877-46047896 | None:intergenic | 20.0% |
| !! | AGAATATGTTATTACTTATG+AGG | + | chr5_1:46048483-46048502 | Msa0733080:CDS | 20.0% |
| !!! | CACATTTTATTATCTTATCA+CGG | + | chr5_1:46048763-46048782 | Msa0733080:intron | 20.0% |
| !! | TTCTATTAATATACCTTACA+TGG | - | chr5_1:46048934-46048953 | None:intergenic | 20.0% |
| !! | ATGTAAGGTATATTAATAGA+AGG | + | chr5_1:46048933-46048952 | Msa0733080:intron | 20.0% |
| !! | AATAAAAGCTTGAATGATAA+TGG | + | chr5_1:46049000-46049019 | Msa0733080:intron | 20.0% |
| !! | AATGTGACTTCAAATTAAAA+TGG | + | chr5_1:46049081-46049100 | Msa0733080:intron | 20.0% |
| !! | ACTAAATGAATATGTTACAT+GGG | + | chr5_1:46049265-46049284 | Msa0733080:intron | 20.0% |
| !!! | TTTGATACGATTTTATTGAA+AGG | + | chr5_1:46049368-46049387 | Msa0733080:intron | 20.0% |
| !!! | TTGATACGATTTTATTGAAA+GGG | + | chr5_1:46049369-46049388 | Msa0733080:intron | 20.0% |
| !! | AAATCAAAGTAAAGTAAACA+AGG | - | chr5_1:46049446-46049465 | None:intergenic | 20.0% |
| !!! | AAAGTAAATTAAGTTGAAGT+AGG | - | chr5_1:46049699-46049718 | None:intergenic | 20.0% |
| !! | TATTGCATTATATATGTTTG+TGG | + | chr5_1:46050026-46050045 | Msa0733080:intron | 20.0% |
| !!! | AGCTTTTTATTAACTTAACT+TGG | + | chr5_1:46051164-46051183 | Msa0733080:intron | 20.0% |
| !! | ACTAAAGTTAAAGTAGAAAA+TGG | + | chr5_1:46051410-46051429 | Msa0733080:intron | 20.0% |
| !! | GTTATTGTCAGAAAATAAAT+TGG | - | chr5_1:46051798-46051817 | None:intergenic | 20.0% |
| !!! | GTTAAAAAAAAGTACAAACA+TGG | - | chr5_1:46051820-46051839 | None:intergenic | 20.0% |
| !!! | TAATGAGTTGGATAAAAATA+TGG | - | chr5_1:46052001-46052020 | None:intergenic | 20.0% |
| !! | AGATTTATAGATTAATGAGT+TGG | - | chr5_1:46052013-46052032 | None:intergenic | 20.0% |
| !! | AAATTGTAACAGAAACTATT+AGG | - | chr5_1:46052038-46052057 | None:intergenic | 20.0% |
| !! | ATATTGTGAAAAATAGGTTT+AGG | - | chr5_1:46052149-46052168 | None:intergenic | 20.0% |
| !! | GTTACACAATTTAAATATCT+TGG | - | chr5_1:46052493-46052512 | None:intergenic | 20.0% |
| !! | TGAATTATAAACAAAAATCG+TGG | - | chr5_1:46053137-46053156 | None:intergenic | 20.0% |
| !! | CCTCAAAAGAATTATTAAAT+GGG | - | chr5_1:46053216-46053235 | None:intergenic | 20.0% |
| !! | ACCTCAAAAGAATTATTAAA+TGG | - | chr5_1:46053217-46053236 | None:intergenic | 20.0% |
| !!! | ACCTTAAAAGATTTTTTTAG+GGG | - | chr5_1:46053240-46053259 | None:intergenic | 20.0% |
| !!! | CACCTTAAAAGATTTTTTTA+GGG | - | chr5_1:46053241-46053260 | None:intergenic | 20.0% |
| !!! | ACACCTTAAAAGATTTTTTT+AGG | - | chr5_1:46053242-46053261 | None:intergenic | 20.0% |
| !!! | ATGGATTGGTCTAAAAAAAT+TGG | - | chr5_1:46046487-46046506 | None:intergenic | 25.0% |
| ! | GAAATTGATACTTGTGTTAA+TGG | - | chr5_1:46046506-46046525 | None:intergenic | 25.0% |
| ! | ATATCTTTATGCTAAAATGG+TGG | + | chr5_1:46046561-46046580 | Msa0733080:intron | 25.0% |
| !!! | TTTTTCAATGTTCTTGGTTT+AGG | + | chr5_1:46046671-46046690 | Msa0733080:intron | 25.0% |
| !!! | GTTGTGTTTTTCAATGTTTT+TGG | + | chr5_1:46046777-46046796 | Msa0733080:intron | 25.0% |
| !! | AAAGATGATCATCTTTTTGA+GGG | - | chr5_1:46047215-46047234 | None:intergenic | 25.0% |
| !! | AAAAGATGATCATCTTTTTG+AGG | - | chr5_1:46047214-46047233 | None:intergenic | 25.0% |
| !!! | TGTATGATGGTTTTAAATTG+CGG | + | chr5_1:46047323-46047342 | Msa0733080:intron | 25.0% |
| !!! | TACTGCAAGGTTTTAAATTT+AGG | + | chr5_1:46047728-46047747 | Msa0733080:intron | 25.0% |
| ! | CTTAACAATGAAAATGAACT+CGG | + | chr5_1:46048026-46048045 | Msa0733080:intron | 25.0% |
| !! | TTTTTCCTAAACGATCTTAT+TGG | - | chr5_1:46048103-46048122 | None:intergenic | 25.0% |
| !!! | AAGTCTACTTTTCTCAAATA+CGG | - | chr5_1:46048220-46048239 | None:intergenic | 25.0% |
| ! | ATTACTTATGAGGATAAAGA+TGG | + | chr5_1:46048493-46048512 | Msa0733080:CDS | 25.0% |
| !!! | TTGTGGTTTTAGTTTGAAAT+AGG | + | chr5_1:46048904-46048923 | Msa0733080:intron | 25.0% |
| !! | TTTGAATTGGCTTAAATTGT+TGG | - | chr5_1:46049108-46049127 | None:intergenic | 25.0% |
| ! | CACTAAATGAATATGTTACA+TGG | + | chr5_1:46049264-46049283 | Msa0733080:intron | 25.0% |
| ! | CTAAATGAATATGTTACATG+GGG | + | chr5_1:46049266-46049285 | Msa0733080:intron | 25.0% |
| ! | GATTGATTGTGTTAAATGAA+TGG | - | chr5_1:46049596-46049615 | None:intergenic | 25.0% |
| !! | CACATAATTTGTACTTGAAT+TGG | - | chr5_1:46049778-46049797 | None:intergenic | 25.0% |
| ! | TTTCACACTAAAATGTCTTA+GGG | - | chr5_1:46049958-46049977 | None:intergenic | 25.0% |
| ! | TAATACCAACTCTAAACTAT+GGG | - | chr5_1:46050215-46050234 | None:intergenic | 25.0% |
| ! | ATAATACCAACTCTAAACTA+TGG | - | chr5_1:46050216-46050235 | None:intergenic | 25.0% |
| ! | TGTTGTAACCAATTTGAAAA+TGG | + | chr5_1:46050662-46050681 | Msa0733080:intron | 25.0% |
| ! | TCTATCGTATAAAATTTACG+CGG | - | chr5_1:46050709-46050728 | None:intergenic | 25.0% |
| ! | AAGAATAAAAATGTTGTGCT+TGG | + | chr5_1:46050784-46050803 | Msa0733080:intron | 25.0% |
| ! | TAAACCAACCCTAAAAAAAA+GGG | - | chr5_1:46051096-46051115 | None:intergenic | 25.0% |
| ! | ATAAACCAACCCTAAAAAAA+AGG | - | chr5_1:46051097-46051116 | None:intergenic | 25.0% |
| !! | ATGAGCTTAAATAGTCATTT+TGG | + | chr5_1:46051237-46051256 | Msa0733080:intron | 25.0% |
| ! | TAACATAAGTCTTTAACGTA+GGG | - | chr5_1:46051356-46051375 | None:intergenic | 25.0% |
| ! | TTAACATAAGTCTTTAACGT+AGG | - | chr5_1:46051357-46051376 | None:intergenic | 25.0% |
| ! | AAGACTTATGTTAATTGATG+AGG | + | chr5_1:46051363-46051382 | Msa0733080:intron | 25.0% |
| ! | AAAGTAGAAAATGGTGATTT+AGG | + | chr5_1:46051419-46051438 | Msa0733080:intron | 25.0% |
| ! | AAGTAGAAAATGGTGATTTA+GGG | + | chr5_1:46051420-46051439 | Msa0733080:intron | 25.0% |
| !! | AAAACTTTTGTTAACTGATG+AGG | - | chr5_1:46051544-46051563 | None:intergenic | 25.0% |
| ! | ATTAAATACAAAGTAGTCCT+TGG | - | chr5_1:46051604-46051623 | None:intergenic | 25.0% |
| ! | ATAATACATTGAAGTGATTG+AGG | + | chr5_1:46051873-46051892 | Msa0733080:intron | 25.0% |
| ! | AAAAATAGGTTTAGGTAGTT+TGG | - | chr5_1:46052141-46052160 | None:intergenic | 25.0% |
| ! | AGATGAGATACGATTATAAA+TGG | - | chr5_1:46052216-46052235 | None:intergenic | 25.0% |
| ! | CAATTACTTTATTATCGTGT+TGG | + | chr5_1:46052276-46052295 | Msa0733080:intron | 25.0% |
| !!! | ATTTTATGCAACAAAGTGTT+GGG | - | chr5_1:46052312-46052331 | None:intergenic | 25.0% |
| !! | TATTTTATGCAACAAAGTGT+TGG | - | chr5_1:46052313-46052332 | None:intergenic | 25.0% |
| ! | TTTGTTGCATAAAATATCGT+TGG | + | chr5_1:46052317-46052336 | Msa0733080:intron | 25.0% |
| ! | GTAAATCATCATATTCAAGT+TGG | - | chr5_1:46052433-46052452 | None:intergenic | 25.0% |
| !! | TGTAGTCTTAATTAAAGTGT+CGG | - | chr5_1:46052671-46052690 | None:intergenic | 25.0% |
| ! | ATGTAAAAAGATAAGGGATT+AGG | + | chr5_1:46052758-46052777 | Msa0733080:intron | 25.0% |
| ! | TGTAAAAAGATAAGGGATTA+GGG | + | chr5_1:46052759-46052778 | Msa0733080:intron | 25.0% |
| ! | TCATAACAAGGATTGTTTAA+GGG | - | chr5_1:46052789-46052808 | None:intergenic | 25.0% |
| ! | TTCATAACAAGGATTGTTTA+AGG | - | chr5_1:46052790-46052809 | None:intergenic | 25.0% |
| ! | ACAACATTATAGAGATAGTT+GGG | - | chr5_1:46053016-46053035 | None:intergenic | 25.0% |
| !! | CCCATTTAATAATTCTTTTG+AGG | + | chr5_1:46053213-46053232 | Msa0733080:intron | 25.0% |
| !! | TCCCCTAAAAAAATCTTTTA+AGG | + | chr5_1:46053236-46053255 | Msa0733080:intron | 25.0% |
| !! | GTATAAATGTAAAGGGTATA+GGG | - | chr5_1:46053514-46053533 | None:intergenic | 25.0% |
| CATTTGTCACAAACATAAAC+TGG | - | chr5_1:46046261-46046280 | None:intergenic | 30.0% | |
| CAGTTTATGTTTGTGACAAA+TGG | + | chr5_1:46046259-46046278 | Msa0733080:five_prime_UTR | 30.0% | |
| TTTATGTTTGTGACAAATGG+AGG | + | chr5_1:46046262-46046281 | Msa0733080:five_prime_UTR | 30.0% | |
| AGAAAAATGGAAGCAAAACA+TGG | - | chr5_1:46046427-46046446 | None:intergenic | 30.0% | |
| TGACATGTTAGAGAGAAAAA+TGG | - | chr5_1:46046440-46046459 | None:intergenic | 30.0% | |
| !!! | GGATAGTTTCATGAGTTTTT+TGG | - | chr5_1:46046463-46046482 | None:intergenic | 30.0% |
| !! | GATTGGTCTAAAAAAATTGG+TGG | - | chr5_1:46046484-46046503 | None:intergenic | 30.0% |
| ! | TGATACTTGTGTTAATGGAT+TGG | - | chr5_1:46046501-46046520 | None:intergenic | 30.0% |
| !! | GTTGTGTTTTTCAATGTTCT+TGG | + | chr5_1:46046665-46046684 | Msa0733080:intron | 30.0% |
| ! | GAAAAAAGTGTGTGTTTGAA+TGG | + | chr5_1:46046951-46046970 | Msa0733080:CDS | 30.0% |
| TAAAGCTACTGAACTTAGAT+TGG | + | chr5_1:46047091-46047110 | Msa0733080:CDS | 30.0% | |
| AAAGCTACTGAACTTAGATT+GGG | + | chr5_1:46047092-46047111 | Msa0733080:CDS | 30.0% | |
| AAATCTGATGAATCTCTTTC+AGG | - | chr5_1:46047137-46047156 | None:intergenic | 30.0% | |
| !! | CTGTTTTAGGTAACAAAAGA+GGG | + | chr5_1:46047246-46047265 | Msa0733080:CDS | 30.0% |
| ! | ATTCAATCGAAAGTGTATGA+TGG | + | chr5_1:46047310-46047329 | Msa0733080:intron | 30.0% |
| !! | CTTAACTGTTGCTATTTCAT+CGG | - | chr5_1:46047583-46047602 | None:intergenic | 30.0% |
| GAAATAGCAACAGTTAAGAT+TGG | + | chr5_1:46047585-46047604 | Msa0733080:CDS | 30.0% | |
| !!! | CTTTTTTTAGAAGCTTGGTT+TGG | + | chr5_1:46048003-46048022 | Msa0733080:intron | 30.0% |
| AATAGTCTTTCAACGATTTG+AGG | + | chr5_1:46048344-46048363 | Msa0733080:intron | 30.0% | |
| ! | ATACAAATTTTGCAGCATTG+TGG | + | chr5_1:46048887-46048906 | Msa0733080:intron | 30.0% |
| !!! | TGGTTTTAGTTTGAAATAGG+TGG | + | chr5_1:46048907-46048926 | Msa0733080:intron | 30.0% |
| GTCTTCAATAATGCCAAAAA+TGG | - | chr5_1:46048969-46048988 | None:intergenic | 30.0% | |
| ACCATTATTTCGTCTAACTA+CGG | - | chr5_1:46049153-46049172 | None:intergenic | 30.0% | |
| ATGTTTGGAAATTGGAATCA+TGG | - | chr5_1:46049235-46049254 | None:intergenic | 30.0% | |
| AAATCGTATCAAATTCGCTA+TGG | - | chr5_1:46049361-46049380 | None:intergenic | 30.0% | |
| ATGAGGAAAATTCTTAGAGA+GGG | + | chr5_1:46049392-46049411 | Msa0733080:intron | 30.0% | |
| AGTTGAGATATATTAGGTGT+TGG | - | chr5_1:46049494-46049513 | None:intergenic | 30.0% | |
| GCAAAGAGTTGAGATATATT+AGG | - | chr5_1:46049500-46049519 | None:intergenic | 30.0% | |
| AATATATCTCAACTCTTTGC+AGG | + | chr5_1:46049500-46049519 | Msa0733080:intron | 30.0% | |
| CAAGTACAAATTATGTGTTG+TGG | + | chr5_1:46049781-46049800 | Msa0733080:intron | 30.0% | |
| !!! | TTACTTTTTTCAACTGCTCT+GGG | - | chr5_1:46049821-46049840 | None:intergenic | 30.0% |
| !!! | TTTACTTTTTTCAACTGCTC+TGG | - | chr5_1:46049822-46049841 | None:intergenic | 30.0% |
| CAGTTGAAAAAAGTAAAAGC+AGG | + | chr5_1:46049825-46049844 | Msa0733080:intron | 30.0% | |
| GAACTAAGCAGTATCAATAA+TGG | + | chr5_1:46049847-46049866 | Msa0733080:intron | 30.0% | |
| TCTATCTATCTAACTGTCTA+TGG | + | chr5_1:46049880-46049899 | Msa0733080:intron | 30.0% | |
| CTTTCACACTAAAATGTCTT+AGG | - | chr5_1:46049959-46049978 | None:intergenic | 30.0% | |
| ! | TCTTATATGTCTTGTTGTGA+AGG | + | chr5_1:46049981-46050000 | Msa0733080:intron | 30.0% |
| ATTCAGAAAGGTTACAAGTT+GGG | - | chr5_1:46050273-46050292 | None:intergenic | 30.0% | |
| TATTCAGAAAGGTTACAAGT+TGG | - | chr5_1:46050274-46050293 | None:intergenic | 30.0% | |
| ACTTGTAACCTTTCTGAATA+TGG | + | chr5_1:46050274-46050293 | Msa0733080:intron | 30.0% | |
| ATCTTGTTCCATATTCAGAA+AGG | - | chr5_1:46050285-46050304 | None:intergenic | 30.0% | |
| ACACTTTGAATTGATGAAGT+TGG | + | chr5_1:46050314-46050333 | Msa0733080:intron | 30.0% | |
| TCTCAAATTATTATCCGTGT+CGG | + | chr5_1:46050443-46050462 | Msa0733080:intron | 30.0% | |
| GAATTGACTGTGTGAATATA+TGG | + | chr5_1:46050612-46050631 | Msa0733080:intron | 30.0% | |
| ! | ATGTGTGACCATTTTCAAAT+TGG | - | chr5_1:46050673-46050692 | None:intergenic | 30.0% |
| GAAAATGGTCACACATAAAA+CGG | + | chr5_1:46050677-46050696 | Msa0733080:intron | 30.0% | |
| AAAAAAACAAGAGCCAATGA+AGG | - | chr5_1:46050997-46051016 | None:intergenic | 30.0% | |
| TTGCATATATAAGAACCTAC+AGG | + | chr5_1:46051059-46051078 | Msa0733080:intron | 30.0% | |
| ACTTATGTTAATTGATGAGG+TGG | + | chr5_1:46051366-46051385 | Msa0733080:intron | 30.0% | |
| !!! | GGTTATTGATTTTTGGTTCA+AGG | + | chr5_1:46051462-46051481 | Msa0733080:intron | 30.0% |
| GAAAGTAGAAATGATCACTT+TGG | - | chr5_1:46051489-46051508 | None:intergenic | 30.0% | |
| TTAATTTCTACGGTTATGCA+CGG | - | chr5_1:46051854-46051873 | None:intergenic | 30.0% | |
| TAAAGTAATTGTGCAGAGAT+GGG | - | chr5_1:46052267-46052286 | None:intergenic | 30.0% | |
| ATAAAGTAATTGTGCAGAGA+TGG | - | chr5_1:46052268-46052287 | None:intergenic | 30.0% | |
| TGTATCACATAAAACACATG+AGG | + | chr5_1:46052387-46052406 | Msa0733080:intron | 30.0% | |
| TGTAATGTAGTTTCAGCAAA+AGG | - | chr5_1:46052564-46052583 | None:intergenic | 30.0% | |
| TGAATAAGATGTTAGAGACT+TGG | - | chr5_1:46052640-46052659 | None:intergenic | 30.0% | |
| !!! | GGGTTTTATTATTTGTCTTC+TGG | - | chr5_1:46052836-46052855 | None:intergenic | 30.0% |
| AGACAAATAATAAAACCCCA+AGG | + | chr5_1:46052838-46052857 | Msa0733080:intron | 30.0% | |
| TATGAAGTCTAACTTACCTT+GGG | - | chr5_1:46052857-46052876 | None:intergenic | 30.0% | |
| ATATGAAGTCTAACTTACCT+TGG | - | chr5_1:46052858-46052877 | None:intergenic | 30.0% | |
| CAACATTATAGAGATAGTTG+GGG | - | chr5_1:46053015-46053034 | None:intergenic | 30.0% | |
| GACAACATTATAGAGATAGT+TGG | - | chr5_1:46053017-46053036 | None:intergenic | 30.0% | |
| AATCGTGGTTTGATTGAAAA+TGG | - | chr5_1:46053122-46053141 | None:intergenic | 30.0% | |
| ATCTGTTTAAACACTGAAAC+AGG | + | chr5_1:46053304-46053323 | Msa0733080:intron | 30.0% | |
| AGTTAGAAGAAGATCTTATG+AGG | + | chr5_1:46053479-46053498 | Msa0733080:CDS | 30.0% | |
| GTTAGAAGAAGATCTTATGA+GGG | + | chr5_1:46053480-46053499 | Msa0733080:CDS | 30.0% | |
| ! | GGTATAAATGTAAAGGGTAT+AGG | - | chr5_1:46053515-46053534 | None:intergenic | 30.0% |
| ACAGTTTAGGTAAAATGTTG+GGG | - | chr5_1:46053542-46053561 | None:intergenic | 30.0% | |
| GACAGTTTAGGTAAAATGTT+GGG | - | chr5_1:46053543-46053562 | None:intergenic | 30.0% | |
| TTTGATCTTGCTCATTCTTC+AGG | + | chr5_1:46046378-46046397 | Msa0733080:five_prime_UTR | 35.0% | |
| AAATGGAAGCAAAACATGGA+AGG | - | chr5_1:46046423-46046442 | None:intergenic | 35.0% | |
| CTTTATGCTAAAATGGTGGT+TGG | + | chr5_1:46046565-46046584 | Msa0733080:intron | 35.0% | |
| ACCAAAAGAGTTCAACTACA+TGG | + | chr5_1:46046980-46046999 | Msa0733080:CDS | 35.0% | |
| CCAAAAGAGTTCAACTACAT+GGG | + | chr5_1:46046981-46047000 | Msa0733080:CDS | 35.0% | |
| ATCCTCTAATTGTTCATCAG+TGG | + | chr5_1:46047010-46047029 | Msa0733080:CDS | 35.0% | |
| ATCCACTGATGAACAATTAG+AGG | - | chr5_1:46047015-46047034 | None:intergenic | 35.0% | |
| ! | CTTTTGTTACCTAAAACAGC+AGG | - | chr5_1:46047245-46047264 | None:intergenic | 35.0% |
| !! | GCTGTTTTAGGTAACAAAAG+AGG | + | chr5_1:46047245-46047264 | Msa0733080:CDS | 35.0% |
| ! | TACCTCTGAGAAAACATTCA+TGG | - | chr5_1:46047282-46047301 | None:intergenic | 35.0% |
| TCCTGCATAATCAATTCAGA+GGG | - | chr5_1:46047504-46047523 | None:intergenic | 35.0% | |
| AAAATGCTTGAGAATGTTGC+CGG | + | chr5_1:46047543-46047562 | Msa0733080:CDS | 35.0% | |
| GAAAGCAAACCAAGTCTTAA+TGG | + | chr5_1:46047633-46047652 | Msa0733080:CDS | 35.0% | |
| ! | CTTAATGGTTCTGCAACTAA+TGG | + | chr5_1:46047648-46047667 | Msa0733080:CDS | 35.0% |
| TTTGTAAGTAACTGCGATTC+AGG | - | chr5_1:46047800-46047819 | None:intergenic | 35.0% | |
| ATCGCAGTTACTTACAAATG+CGG | + | chr5_1:46047802-46047821 | Msa0733080:intron | 35.0% | |
| CTTGAATCACGATTGTATCA+CGG | + | chr5_1:46047929-46047948 | Msa0733080:intron | 35.0% | |
| !!! | GCGAACTTTTTTTAGAAGCT+TGG | + | chr5_1:46047998-46048017 | Msa0733080:intron | 35.0% |
| GATGATTGATGAATCTTGTG+TGG | + | chr5_1:46048052-46048071 | Msa0733080:intron | 35.0% | |
| TTCCTAAACGATCTTATTGG+AGG | - | chr5_1:46048100-46048119 | None:intergenic | 35.0% | |
| !! | TTCATTGTTCTTTGAAGCAG+TGG | - | chr5_1:46048134-46048153 | None:intergenic | 35.0% |
| TGCTTCAAAGAACAATGAAG+AGG | + | chr5_1:46048135-46048154 | Msa0733080:CDS | 35.0% | |
| AAGAACAATGAAGAGGTTGA+TGG | + | chr5_1:46048142-46048161 | Msa0733080:CDS | 35.0% | |
| !! | TGAAGAGGTTGATGGAAAAT+TGG | + | chr5_1:46048150-46048169 | Msa0733080:CDS | 35.0% |
| !! | GAAGAGGTTGATGGAAAATT+GGG | + | chr5_1:46048151-46048170 | Msa0733080:CDS | 35.0% |
| !! | TTTGAGGCAATTTTTGTGTC+TGG | + | chr5_1:46048360-46048379 | Msa0733080:intron | 35.0% |
| GCTTATGTTGATGTGATTTC+AGG | + | chr5_1:46048394-46048413 | Msa0733080:intron | 35.0% | |
| ATGAGGATAAAGATGGTGAT+TGG | + | chr5_1:46048500-46048519 | Msa0733080:CDS | 35.0% | |
| AGTACATAAACTTACTCCCA+GGG | - | chr5_1:46048544-46048563 | None:intergenic | 35.0% | |
| AAGTACATAAACTTACTCCC+AGG | - | chr5_1:46048545-46048564 | None:intergenic | 35.0% | |
| TGGGAGTAAGTTTATGTACT+TGG | + | chr5_1:46048544-46048563 | Msa0733080:intron | 35.0% | |
| !!! | AGGTAAGAAACTGCCATTTT+TGG | + | chr5_1:46048953-46048972 | Msa0733080:intron | 35.0% |
| GCAGTACAAATAGTACAGTA+TGG | - | chr5_1:46049033-46049052 | None:intergenic | 35.0% | |
| !!! | ACAAGCGCTAAGTTTTGAAT+TGG | - | chr5_1:46049121-46049140 | None:intergenic | 35.0% |
| ATGACTGCATGTTTGGAAAT+TGG | - | chr5_1:46049243-46049262 | None:intergenic | 35.0% | |
| TTAGTGTATGACTGCATGTT+TGG | - | chr5_1:46049250-46049269 | None:intergenic | 35.0% | |
| TGAAGCGCAAAATTGAAAAC+AGG | - | chr5_1:46049309-46049328 | None:intergenic | 35.0% | |
| ! | CGATTTTATTGAAAGGGATG+AGG | + | chr5_1:46049375-46049394 | Msa0733080:intron | 35.0% |
| GATGAGGAAAATTCTTAGAG+AGG | + | chr5_1:46049391-46049410 | Msa0733080:intron | 35.0% | |
| GGATGTTTATTGATACATGC+AGG | + | chr5_1:46049521-46049540 | Msa0733080:intron | 35.0% | |
| TGTTTATTGATACATGCAGG+AGG | + | chr5_1:46049524-46049543 | Msa0733080:CDS | 35.0% | |
| GGAATACTAACCTAAACCAA+TGG | - | chr5_1:46049575-46049594 | None:intergenic | 35.0% | |
| !!! | TACTTTTTTCAACTGCTCTG+GGG | - | chr5_1:46049820-46049839 | None:intergenic | 35.0% |
| ! | GCTTGTTGCATATAGTAGTT+AGG | + | chr5_1:46050155-46050174 | Msa0733080:intron | 35.0% |
| TGCATATAGTAGTTAGGTGT+TGG | + | chr5_1:46050161-46050180 | Msa0733080:intron | 35.0% | |
| ! | GAATTCCCATAGTTTAGAGT+TGG | + | chr5_1:46050207-46050226 | Msa0733080:intron | 35.0% |
| !!! | TCACATTTTTAGCCAAACAG+TGG | + | chr5_1:46050245-46050264 | Msa0733080:intron | 35.0% |
| TTCAGAAAGGTTACAAGTTG+GGG | - | chr5_1:46050272-46050291 | None:intergenic | 35.0% | |
| !! | TATGAAGCATCGACACTATT+CGG | + | chr5_1:46050339-46050358 | Msa0733080:intron | 35.0% |
| ! | TATTCGGATTTGGGATGTTT+CGG | + | chr5_1:46050355-46050374 | Msa0733080:intron | 35.0% |
| CACCAATATACTATGAAGCA+CGG | - | chr5_1:46050480-46050499 | None:intergenic | 35.0% | |
| AAATTCGATTTCTTGCAGCA+TGG | - | chr5_1:46050642-46050661 | None:intergenic | 35.0% | |
| ! | AAAAATGTTGTGCTTGGTGA+TGG | + | chr5_1:46050790-46050809 | Msa0733080:intron | 35.0% |
| !! | CATGTGAAGCACTGATTATT+GGG | + | chr5_1:46050889-46050908 | Msa0733080:intron | 35.0% |
| !!! | CATAGCCACCCTTTTTTTTA+GGG | + | chr5_1:46051085-46051104 | Msa0733080:intron | 35.0% |
| CGTAGGGATTAAACTGATAA+CGG | - | chr5_1:46051340-46051359 | None:intergenic | 35.0% | |
| ! | AGGGATTTGAGATTCAATTG+CGG | + | chr5_1:46051439-46051458 | Msa0733080:intron | 35.0% |
| !!! | ATTGCGGGGTTATTGATTTT+TGG | + | chr5_1:46051455-46051474 | Msa0733080:intron | 35.0% |
| TCTAGGGACTAAACTGATAA+TGG | + | chr5_1:46051568-46051587 | Msa0733080:intron | 35.0% | |
| ATACATTGTACAGACAGTTG+GGG | - | chr5_1:46052189-46052208 | None:intergenic | 35.0% | |
| CATACATTGTACAGACAGTT+GGG | - | chr5_1:46052190-46052209 | None:intergenic | 35.0% | |
| ACATACATTGTACAGACAGT+TGG | - | chr5_1:46052191-46052210 | None:intergenic | 35.0% | |
| AAAGTAATTGTGCAGAGATG+GGG | - | chr5_1:46052266-46052285 | None:intergenic | 35.0% | |
| !! | TCTTAATTAAAGTGTCGGAG+AGG | - | chr5_1:46052666-46052685 | None:intergenic | 35.0% |
| TCTTCAAAACGAATCCATCT+CGG | + | chr5_1:46052694-46052713 | Msa0733080:intron | 35.0% | |
| ATGAAGTCTAACTTACCTTG+GGG | - | chr5_1:46052856-46052875 | None:intergenic | 35.0% | |
| ACGACTCTAATTACCTCTAT+AGG | + | chr5_1:46052984-46053003 | Msa0733080:intron | 35.0% | |
| TTTAAACACTGAAACAGGTG+TGG | + | chr5_1:46053309-46053328 | Msa0733080:intron | 35.0% | |
| AGGAGTCACGAAAAAAATCT+CGG | + | chr5_1:46053348-46053367 | Msa0733080:CDS | 35.0% | |
| AAAAAAATCTCGGATGAGGA+GGG | + | chr5_1:46053358-46053377 | Msa0733080:CDS | 35.0% | |
| ! | GGTGAGGGTATAAATGTAAA+GGG | - | chr5_1:46053521-46053540 | None:intergenic | 35.0% |
| GGACAGTTTAGGTAAAATGT+TGG | - | chr5_1:46053544-46053563 | None:intergenic | 35.0% | |
| AAGGGTAAAATGGACAGTTT+AGG | - | chr5_1:46053555-46053574 | None:intergenic | 35.0% | |
| ! | GTGAGAGAGTTTAGAGGTTT+TGG | - | chr5_1:46046333-46046352 | None:intergenic | 40.0% |
| AGAGAAGTGAGAGAGTTTAG+AGG | - | chr5_1:46046339-46046358 | None:intergenic | 40.0% | |
| TCATTGTGATGTCTCTACCA+AGG | + | chr5_1:46046883-46046902 | Msa0733080:exon | 40.0% | |
| ! | CCCATGTAGTTGAACTCTTT+TGG | - | chr5_1:46046984-46047003 | None:intergenic | 40.0% |
| !! | TCATCTTTTTGAGGGTGCAA+AGG | - | chr5_1:46047203-46047222 | None:intergenic | 40.0% |
| !!! | GAATCAAAGCCTGCTGTTTT+AGG | + | chr5_1:46047233-46047252 | Msa0733080:CDS | 40.0% |
| ! | TGCCATGAATGTTTTCTCAG+AGG | + | chr5_1:46047277-46047296 | Msa0733080:CDS | 40.0% |
| TCCCTCTGAATTGATTATGC+AGG | + | chr5_1:46047500-46047519 | Msa0733080:intron | 40.0% | |
| CTCCTGCATAATCAATTCAG+AGG | - | chr5_1:46047505-46047524 | None:intergenic | 40.0% | |
| !!! | TTCTCAAGCATTTTGGAGCT+AGG | - | chr5_1:46047537-46047556 | None:intergenic | 40.0% |
| ! | GGCAACATTCTCAAGCATTT+TGG | - | chr5_1:46047544-46047563 | None:intergenic | 40.0% |
| AAATGCTTGAGAATGTTGCC+GGG | + | chr5_1:46047544-46047563 | Msa0733080:CDS | 40.0% | |
| !! | CAGTTAAGATTGGTCTTGAG+AGG | + | chr5_1:46047595-46047614 | Msa0733080:CDS | 40.0% |
| GTTGCAGAACCATTAAGACT+TGG | - | chr5_1:46047645-46047664 | None:intergenic | 40.0% | |
| TGGCATTAGAGTTTACTGCA+AGG | + | chr5_1:46047715-46047734 | Msa0733080:intron | 40.0% | |
| ! | GACATCGTGGTTTTTGATGT+TGG | - | chr5_1:46047960-46047979 | None:intergenic | 40.0% |
| ATTGATGAATCTTGTGTGGC+AGG | + | chr5_1:46048056-46048075 | Msa0733080:intron | 40.0% | |
| TTGATGAATCTTGTGTGGCA+GGG | + | chr5_1:46048057-46048076 | Msa0733080:intron | 40.0% | |
| ! | GTTGATGGAAAATTGGGATC+AGG | + | chr5_1:46048157-46048176 | Msa0733080:CDS | 40.0% |
| ! | ATGTTCAGCTGTTTCACCAT+AGG | + | chr5_1:46048286-46048305 | Msa0733080:CDS | 40.0% |
| AACCTATTCCTACCTACCTA+TGG | - | chr5_1:46048305-46048324 | None:intergenic | 40.0% | |
| TCAGGTCAATGTGAATCTCA+TGG | + | chr5_1:46048412-46048431 | Msa0733080:intron | 40.0% | |
| CGATTAATGAAGCACAGACA+CGG | + | chr5_1:46048579-46048598 | Msa0733080:intron | 40.0% | |
| TTGAATGTAACCACGTGTGT+TGG | + | chr5_1:46048653-46048672 | Msa0733080:intron | 40.0% | |
| TGAAATAGGTGGTCCATGTA+AGG | + | chr5_1:46048918-46048937 | Msa0733080:intron | 40.0% | |
| CTGTACTATTTGTACTGCGT+TGG | + | chr5_1:46049035-46049054 | Msa0733080:intron | 40.0% | |
| GCCGTAGTTAGACGAAATAA+TGG | + | chr5_1:46049149-46049168 | Msa0733080:intron | 40.0% | |
| GAATATGTTACATGGGGCTT+AGG | + | chr5_1:46049272-46049291 | Msa0733080:intron | 40.0% | |
| !! | GGTGTTGGAATTAGTTTGCA+GGG | - | chr5_1:46049479-46049498 | None:intergenic | 40.0% |
| !! | AGGTGTTGGAATTAGTTTGC+AGG | - | chr5_1:46049480-46049499 | None:intergenic | 40.0% |
| !!! | ACTTTTTTCAACTGCTCTGG+GGG | - | chr5_1:46049819-46049838 | None:intergenic | 40.0% |
| !! | GAATAGTGTCGATGCTTCAT+AGG | - | chr5_1:46050340-46050359 | None:intergenic | 40.0% |
| CATCGACACTATTCGGATTT+GGG | + | chr5_1:46050346-46050365 | Msa0733080:intron | 40.0% | |
| GTCCGTGCTTCATAGTATAT+TGG | + | chr5_1:46050475-46050494 | Msa0733080:intron | 40.0% | |
| TAGAGATACTGTGACACTGT+TGG | + | chr5_1:46050836-46050855 | Msa0733080:intron | 40.0% | |
| TACTGTGACACTGTTGGATA+CGG | + | chr5_1:46050842-46050861 | Msa0733080:intron | 40.0% | |
| !! | GCATGTGAAGCACTGATTAT+TGG | + | chr5_1:46050888-46050907 | Msa0733080:intron | 40.0% |
| ATGCTTCAGTTGAATGAAGC+AGG | - | chr5_1:46050937-46050956 | None:intergenic | 40.0% | |
| !!! | GCATAGCCACCCTTTTTTTT+AGG | + | chr5_1:46051084-46051103 | Msa0733080:intron | 40.0% |
| ACCAACCCTAAAAAAAAGGG+TGG | - | chr5_1:46051093-46051112 | None:intergenic | 40.0% | |
| GACAATGATGTGCAAAGTCA+GGG | - | chr5_1:46051264-46051283 | None:intergenic | 40.0% | |
| TGACAATGATGTGCAAAGTC+AGG | - | chr5_1:46051265-46051284 | None:intergenic | 40.0% | |
| GTCACAAACGTTTCTGACTT+AGG | + | chr5_1:46051281-46051300 | Msa0733080:intron | 40.0% | |
| ! | GGGATTTGAGATTCAATTGC+GGG | + | chr5_1:46051440-46051459 | Msa0733080:intron | 40.0% |
| ! | GGATTTGAGATTCAATTGCG+GGG | + | chr5_1:46051441-46051460 | Msa0733080:intron | 40.0% |
| ! | ATAATGGAAGTGCACATCCA+AGG | + | chr5_1:46051584-46051603 | Msa0733080:intron | 40.0% |
| ! | GTCTGAGACCTTTGTAACAA+CGG | + | chr5_1:46051629-46051648 | Msa0733080:intron | 40.0% |
| ! | TCTGAGACCTTTGTAACAAC+GGG | + | chr5_1:46051630-46051649 | Msa0733080:intron | 40.0% |
| GTTATGCACGGAGGATATAT+AGG | - | chr5_1:46051842-46051861 | None:intergenic | 40.0% | |
| ATCTCTCCTAACATACGCAT+CGG | + | chr5_1:46051912-46051931 | Msa0733080:intron | 40.0% | |
| ATCTAACCGATGCGTATGTT+AGG | - | chr5_1:46051921-46051940 | None:intergenic | 40.0% | |
| !! | TAACATACGCATCGGTTAGA+TGG | + | chr5_1:46051920-46051939 | Msa0733080:intron | 40.0% |
| AGGTAGTTTGGACATGTAGA+GGG | - | chr5_1:46052129-46052148 | None:intergenic | 40.0% | |
| TAGGTAGTTTGGACATGTAG+AGG | - | chr5_1:46052130-46052149 | None:intergenic | 40.0% | |
| ATCTCCAACTTTCACCTCAA+TGG | + | chr5_1:46052525-46052544 | Msa0733080:intron | 40.0% | |
| TCTACCATTGAGGTGAAAGT+TGG | - | chr5_1:46052532-46052551 | None:intergenic | 40.0% | |
| CACGAAAAAAATCTCGGATG+AGG | + | chr5_1:46053354-46053373 | Msa0733080:CDS | 40.0% | |
| GAAAAAAATCTCGGATGAGG+AGG | + | chr5_1:46053357-46053376 | Msa0733080:CDS | 40.0% | |
| ! | AATATCCGTGGAGGTCTTTT+GGG | - | chr5_1:46053438-46053457 | None:intergenic | 40.0% |
| ATATTCTACACGGACGAATG+AGG | + | chr5_1:46053453-46053472 | Msa0733080:CDS | 40.0% | |
| ! | GGGTGAGGGTATAAATGTAA+AGG | - | chr5_1:46053522-46053541 | None:intergenic | 40.0% |
| TAGGTAAAATGTTGGGGTGA+GGG | - | chr5_1:46053536-46053555 | None:intergenic | 40.0% | |
| TTAGGTAAAATGTTGGGGTG+AGG | - | chr5_1:46053537-46053556 | None:intergenic | 40.0% | |
| TCTCTACCAAGGCTAGGAAT+AGG | + | chr5_1:46046894-46046913 | Msa0733080:CDS | 45.0% | |
| TCATCACCTATTCCTAGCCT+TGG | - | chr5_1:46046903-46046922 | None:intergenic | 45.0% | |
| GAACTTAGATTGGGACTTCC+AGG | + | chr5_1:46047101-46047120 | Msa0733080:CDS | 45.0% | |
| CTTTCAGGAGAAAGTGATCC+TGG | - | chr5_1:46047122-46047141 | None:intergenic | 45.0% | |
| ! | TGAGGGTGCAAAGGAAAAAG+AGG | - | chr5_1:46047194-46047213 | None:intergenic | 45.0% |
| !! | ATTGGTCTTGAGAGGCCTAA+TGG | + | chr5_1:46047603-46047622 | Msa0733080:CDS | 45.0% |
| TTGCTTTCACCGACACCATT+AGG | - | chr5_1:46047621-46047640 | None:intergenic | 45.0% | |
| CTCCTGCTAGCAAGTAAGTA+GGG | + | chr5_1:46047682-46047701 | Msa0733080:intron | 45.0% | |
| GTAAGTAGGGTGGTGTGAAT+TGG | + | chr5_1:46047695-46047714 | Msa0733080:intron | 45.0% | |
| CTCAGATTGCGGTCAAATAG+TGG | + | chr5_1:46047851-46047870 | Msa0733080:intron | 45.0% | |
| CATCAAAAACCACGATGTCG+CGG | + | chr5_1:46047961-46047980 | Msa0733080:intron | 45.0% | |
| GGCCTCCAATAAGATCGTTT+AGG | + | chr5_1:46048095-46048114 | Msa0733080:CDS | 45.0% | |
| GATGGAAAATTGGGATCAGG+AGG | + | chr5_1:46048160-46048179 | Msa0733080:CDS | 45.0% | |
| TGTGTTTGTGAAGGTCAGCA+TGG | + | chr5_1:46048186-46048205 | Msa0733080:CDS | 45.0% | |
| TTTGTGAAGGTCAGCATGGA+TGG | + | chr5_1:46048190-46048209 | Msa0733080:CDS | 45.0% | |
| ! | TCAGCTGTTTCACCATAGGT+AGG | + | chr5_1:46048290-46048309 | Msa0733080:intron | 45.0% |
| CTGTTTCACCATAGGTAGGT+AGG | + | chr5_1:46048294-46048313 | Msa0733080:intron | 45.0% | |
| CACCATAGGTAGGTAGGAAT+AGG | + | chr5_1:46048300-46048319 | Msa0733080:intron | 45.0% | |
| TGCTGAATGAAACCAAGCTG+AGG | + | chr5_1:46048443-46048462 | Msa0733080:CDS | 45.0% | |
| GCTGAATGAAACCAAGCTGA+GGG | + | chr5_1:46048444-46048463 | Msa0733080:CDS | 45.0% | |
| AGATGGTGATTGGATGCTTG+TGG | + | chr5_1:46048510-46048529 | Msa0733080:CDS | 45.0% | |
| GATGGTGATTGGATGCTTGT+GGG | + | chr5_1:46048511-46048530 | Msa0733080:CDS | 45.0% | |
| ACTACCAATGTCGACGATGT+CGG | - | chr5_1:46048613-46048632 | None:intergenic | 45.0% | |
| ! | ATGAAGAGCTCTGATGCCAT+TGG | + | chr5_1:46049556-46049575 | Msa0733080:CDS | 45.0% |
| !! | AGCTCTGATGCCATTGGTTT+AGG | + | chr5_1:46049562-46049581 | Msa0733080:CDS | 45.0% |
| ! | GCATCGACACTATTCGGATT+TGG | + | chr5_1:46050345-46050364 | Msa0733080:intron | 45.0% |
| ! | GATTTGGGATGTTTCGGTGT+CGG | + | chr5_1:46050361-46050380 | Msa0733080:intron | 45.0% |
| ! | CATAAGTGTCGTGTCAGTGT+TGG | - | chr5_1:46050401-46050420 | None:intergenic | 45.0% |
| TATTATCCGTGTCGGAGTGT+CGG | + | chr5_1:46050451-46050470 | Msa0733080:intron | 45.0% | |
| TTGATTCAAGAGCTCGAGTC+TGG | - | chr5_1:46050760-46050779 | None:intergenic | 45.0% | |
| ACACTGTTGGATACGGTTGT+CGG | + | chr5_1:46050849-46050868 | Msa0733080:intron | 45.0% | |
| TGCTTCACATGCTATGCTAC+TGG | - | chr5_1:46050880-46050899 | None:intergenic | 45.0% | |
| ACTGATTATTGGGTGCAGTG+CGG | + | chr5_1:46050899-46050918 | Msa0733080:intron | 45.0% | |
| AACAAGAGCCAATGAAGGCT+CGG | - | chr5_1:46050992-46051011 | None:intergenic | 45.0% | |
| !!! | GCCACCCTTTTTTTTAGGGT+TGG | + | chr5_1:46051089-46051108 | Msa0733080:intron | 45.0% |
| TTGATGAGGTGGTATGCATG+AGG | + | chr5_1:46051377-46051396 | Msa0733080:intron | 45.0% | |
| CTGAGACCTTTGTAACAACG+GGG | + | chr5_1:46051631-46051650 | Msa0733080:intron | 45.0% | |
| TCTGTACCCCGTTGTTACAA+AGG | - | chr5_1:46051640-46051659 | None:intergenic | 45.0% | |
| ATTTCTACGGTTATGCACGG+AGG | - | chr5_1:46051851-46051870 | None:intergenic | 45.0% | |
| ! | GCGAAGTAGTTCTACCATTG+AGG | - | chr5_1:46052542-46052561 | None:intergenic | 45.0% |
| ! | GGTGTTGAGTTTGAGAGAAG+TGG | + | chr5_1:46053257-46053276 | Msa0733080:intron | 45.0% |
| ! | ATATCCGTGGAGGTCTTTTG+GGG | - | chr5_1:46053437-46053456 | None:intergenic | 45.0% |
| ! | GAATATCCGTGGAGGTCTTT+TGG | - | chr5_1:46053439-46053458 | None:intergenic | 45.0% |
| ACCTCCACGGATATTCTACA+CGG | + | chr5_1:46053443-46053462 | Msa0733080:CDS | 45.0% | |
| !!! | TCTAATTTTTTATAAAATAA+TGG | + | chr5_1:46047454-46047473 | Msa0733080:intron | 5.0% |
| !! | AAAAATATAAAGAATTAAAA+TGG | - | chr5_1:46051771-46051790 | None:intergenic | 5.0% |
| !!! | TTTTTATTTATCTTTATTTT+TGG | - | chr5_1:46052951-46052970 | None:intergenic | 5.0% |
| GTGATGTCTCTACCAAGGCT+AGG | + | chr5_1:46046888-46046907 | Msa0733080:exon | 50.0% | |
| ! | TGCAACCCGCAATTGAGTTG+CGG | + | chr5_1:46047403-46047422 | Msa0733080:intron | 50.0% |
| TGCAGTCCGCAACTCAATTG+CGG | - | chr5_1:46047412-46047431 | None:intergenic | 50.0% | |
| ! | ATCGGCTTTCACTTTCTGCC+CGG | - | chr5_1:46047565-46047584 | None:intergenic | 50.0% |
| CTTGAGAGGCCTAATGGTGT+CGG | + | chr5_1:46047609-46047628 | Msa0733080:CDS | 50.0% | |
| GCTCCTGCTAGCAAGTAAGT+AGG | + | chr5_1:46047681-46047700 | Msa0733080:intron | 50.0% | |
| ! | CACCCTACTTACTTGCTAGC+AGG | - | chr5_1:46047687-46047706 | None:intergenic | 50.0% |
| CTGCTAGCAAGTAAGTAGGG+TGG | + | chr5_1:46047685-46047704 | Msa0733080:intron | 50.0% | |
| CAATCTGAGCTGCGACATCA+TGG | - | chr5_1:46047840-46047859 | None:intergenic | 50.0% | |
| TGATGTCGCAGCTCAGATTG+CGG | + | chr5_1:46047840-46047859 | Msa0733080:intron | 50.0% | |
| !! | AGGAGGTGCTGTGTTTGTGA+AGG | + | chr5_1:46048177-46048196 | Msa0733080:CDS | 50.0% |
| ATGAAGCAGATCCCTCAGCT+TGG | - | chr5_1:46048458-46048477 | None:intergenic | 50.0% | |
| AAGCTGAGGGATCTGCTTCA+TGG | + | chr5_1:46048457-46048476 | Msa0733080:CDS | 50.0% | |
| !! | CACGTGTGTTGGTGTTGTGT+CGG | + | chr5_1:46048664-46048683 | Msa0733080:intron | 50.0% |
| ! | ACAAGTTGGGGACCACTGTT+TGG | - | chr5_1:46050260-46050279 | None:intergenic | 50.0% |
| CACTGTTGGATACGGTTGTC+GGG | + | chr5_1:46050850-46050869 | Msa0733080:intron | 50.0% | |
| AGCATGCACAGTCACAGAAG+TGG | + | chr5_1:46050952-46050971 | Msa0733080:intron | 50.0% | |
| CAACAATGCCGAGCCTTCAT+TGG | + | chr5_1:46050981-46051000 | Msa0733080:intron | 50.0% | |
| ! | GGTATGCATGAGGTGTCACA+TGG | + | chr5_1:46051387-46051406 | Msa0733080:intron | 50.0% |
| ! | GACGTGCATGAGGTATCACA+GGG | - | chr5_1:46051520-46051539 | None:intergenic | 50.0% |
| ! | TGACGTGCATGAGGTATCAC+AGG | - | chr5_1:46051521-46051540 | None:intergenic | 50.0% |
| TAACAACGGGGTACAGAGTC+AGG | + | chr5_1:46051643-46051662 | Msa0733080:intron | 50.0% | |
| AACAACGGGGTACAGAGTCA+GGG | + | chr5_1:46051644-46051663 | Msa0733080:intron | 50.0% | |
| GGGATGTTGCATTGGATGTG+TGG | - | chr5_1:46052246-46052265 | None:intergenic | 50.0% | |
| CAGAGATGGGGATGTTGCAT+TGG | - | chr5_1:46052254-46052273 | None:intergenic | 50.0% | |
| !! | TCCATCTCGGTGCTAGTTGT+TGG | + | chr5_1:46052707-46052726 | Msa0733080:intron | 50.0% |
| ! | TCCAACAACTAGCACCGAGA+TGG | - | chr5_1:46052711-46052730 | None:intergenic | 50.0% |
| !! | AGTTGGGGAAGCACCTATAG+AGG | - | chr5_1:46053000-46053019 | None:intergenic | 50.0% |
| ! | GTGGATGCTCTAAGCAGCAA+AGG | + | chr5_1:46053328-46053347 | Msa0733080:CDS | 50.0% |
| GTGAAGACGTAGTGTGGAGA+AGG | + | chr5_1:46053380-46053399 | Msa0733080:CDS | 50.0% | |
| TCCAACCTAGCCCATCAGAA+AGG | + | chr5_1:46053410-46053429 | Msa0733080:CDS | 50.0% | |
| CCAACCTAGCCCATCAGAAA+GGG | + | chr5_1:46053411-46053430 | Msa0733080:CDS | 50.0% | |
| !!! | CTTTTGGGGCCCTTTCTGAT+GGG | - | chr5_1:46053423-46053442 | None:intergenic | 50.0% |
| !!! | TCTTTTGGGGCCCTTTCTGA+TGG | - | chr5_1:46053424-46053443 | None:intergenic | 50.0% |
| TCCGTGTAGAATATCCGTGG+AGG | - | chr5_1:46053447-46053466 | None:intergenic | 50.0% | |
| TCGTCCGTGTAGAATATCCG+TGG | - | chr5_1:46053450-46053469 | None:intergenic | 50.0% | |
| GCAGTCCGCAACTCAATTGC+GGG | - | chr5_1:46047411-46047430 | None:intergenic | 55.0% | |
| AATCTTGTGTGGCAGGGCAC+AGG | + | chr5_1:46048063-46048082 | Msa0733080:intron | 55.0% | |
| TGCTTGTGGGTGATGTTCCC+TGG | + | chr5_1:46048524-46048543 | Msa0733080:CDS | 55.0% | |
| GCTTGTGGGTGATGTTCCCT+GGG | + | chr5_1:46048525-46048544 | Msa0733080:CDS | 55.0% | |
| GACACCGACATCGTCGACAT+TGG | + | chr5_1:46048606-46048625 | Msa0733080:intron | 55.0% | |
| CGACACAACACCAACACACG+TGG | - | chr5_1:46048666-46048685 | None:intergenic | 55.0% | |
| !! | TTTCGGTGTCGGACACACGT+CGG | + | chr5_1:46050372-46050391 | Msa0733080:intron | 55.0% |
| CTGATGAGGTGACGTGCATG+AGG | - | chr5_1:46051530-46051549 | None:intergenic | 55.0% | |
| AGGAGGGTGAAGACGTAGTG+TGG | + | chr5_1:46053374-46053393 | Msa0733080:CDS | 55.0% | |
| !! | CCCTTTCTGATGGGCTAGGT+TGG | - | chr5_1:46053414-46053433 | None:intergenic | 55.0% |
| AAGTCTGAGCCGCGACATCG+TGG | - | chr5_1:46047973-46047992 | None:intergenic | 60.0% | |
| CGATGTCGCGGCTCAGACTT+CGG | + | chr5_1:46047973-46047992 | Msa0733080:intron | 60.0% | |
| TGTGGCAGGGCACAGGTTGT+TGG | + | chr5_1:46048070-46048089 | Msa0733080:intron | 60.0% | |
| GCAGGGCACAGGTTGTTGGT+TGG | + | chr5_1:46048074-46048093 | Msa0733080:intron | 60.0% | |
| !! | CTGCTCTGGGGGCTGCAAAA+TGG | - | chr5_1:46049808-46049827 | None:intergenic | 60.0% |
| ATTGGGTGCAGTGCGGTGCA+TGG | + | chr5_1:46050906-46050925 | Msa0733080:intron | 60.0% | |
| AGGGTGGCTATGCAGCCTGT+AGG | - | chr5_1:46051077-46051096 | None:intergenic | 60.0% | |
| !! | CTGATGGGCTAGGTTGGACG+AGG | - | chr5_1:46053408-46053427 | None:intergenic | 60.0% |
| AGGGCCCCAAAAGACCTCCA+CGG | + | chr5_1:46053430-46053449 | Msa0733080:CDS | 60.0% | |
| CGGACACCGACACTCCGACA+CGG | - | chr5_1:46050460-46050479 | None:intergenic | 65.0% | |
| !! | GGGGCCCTTTCTGATGGGCT+AGG | - | chr5_1:46053418-46053437 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 46046202 | 46053582 | 46046202 | ID=Msa0733080;Name=Msa0733080 |
| chr5_1 | mRNA | 46046202 | 46053582 | 46046202 | ID=Msa0733080-mRNA-1;Parent=Msa0733080;Name=Msa0733080-mRNA-1;_AED=0.24;_eAED=0.24;_QI=252|0.83|0.85|0.85|0.83|0.71|7|0|420 |
| chr5_1 | exon | 46046202 | 46046399 | 46046202 | ID=Msa0733080-mRNA-1:exon:13133;Parent=Msa0733080-mRNA-1 |
| chr5_1 | exon | 46046837 | 46047298 | 46046837 | ID=Msa0733080-mRNA-1:exon:13134;Parent=Msa0733080-mRNA-1 |
| chr5_1 | exon | 46047522 | 46047694 | 46047522 | ID=Msa0733080-mRNA-1:exon:13135;Parent=Msa0733080-mRNA-1 |
| chr5_1 | exon | 46048078 | 46048307 | 46048078 | ID=Msa0733080-mRNA-1:exon:13136;Parent=Msa0733080-mRNA-1 |
| chr5_1 | exon | 46048416 | 46048548 | 46048416 | ID=Msa0733080-mRNA-1:exon:13137;Parent=Msa0733080-mRNA-1 |
| chr5_1 | exon | 46049522 | 46049583 | 46049522 | ID=Msa0733080-mRNA-1:exon:13138;Parent=Msa0733080-mRNA-1 |
| chr5_1 | exon | 46053326 | 46053582 | 46053326 | ID=Msa0733080-mRNA-1:exon:13139;Parent=Msa0733080-mRNA-1 |
| chr5_1 | five_prime_UTR | 46046202 | 46046399 | 46046202 | ID=Msa0733080-mRNA-1:five_prime_utr;Parent=Msa0733080-mRNA-1 |
| chr5_1 | five_prime_UTR | 46046837 | 46046890 | 46046837 | ID=Msa0733080-mRNA-1:five_prime_utr;Parent=Msa0733080-mRNA-1 |
| chr5_1 | CDS | 46046891 | 46047298 | 46046891 | ID=Msa0733080-mRNA-1:cds;Parent=Msa0733080-mRNA-1 |
| chr5_1 | CDS | 46047522 | 46047694 | 46047522 | ID=Msa0733080-mRNA-1:cds;Parent=Msa0733080-mRNA-1 |
| chr5_1 | CDS | 46048078 | 46048307 | 46048078 | ID=Msa0733080-mRNA-1:cds;Parent=Msa0733080-mRNA-1 |
| chr5_1 | CDS | 46048416 | 46048548 | 46048416 | ID=Msa0733080-mRNA-1:cds;Parent=Msa0733080-mRNA-1 |
| chr5_1 | CDS | 46049522 | 46049583 | 46049522 | ID=Msa0733080-mRNA-1:cds;Parent=Msa0733080-mRNA-1 |
| chr5_1 | CDS | 46053326 | 46053582 | 46053326 | ID=Msa0733080-mRNA-1:cds;Parent=Msa0733080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
