Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0851850 | XP_003615390.1 | 88.608 | 316 | 13 | 2 | 1 | 293 | 1 | 316 | 0.0 | 535 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0851850 | sp|Q38826|IAA8_ARATH | 53.767 | 292 | 101 | 12 | 20 | 293 | 13 | 288 | 7.40e-80 | 248 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0851850 | G7K618 | 88.608 | 316 | 13 | 2 | 1 | 293 | 1 | 316 | 0.0 | 535 |
Gene ID | Type | Classification |
---|---|---|
Msa0851850 | TR | AUX/IAA |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0002420 | Msa0851850 | 0.822740 | 2.015090e-53 | -8.615850e-47 |
Msa0003080 | Msa0851850 | 0.802475 | 5.512961e-49 | -8.615850e-47 |
Msa0014770 | Msa0851850 | 0.805149 | 1.534591e-49 | -8.615850e-47 |
Msa0017670 | Msa0851850 | 0.830514 | 2.814252e-55 | -8.615850e-47 |
Msa0022400 | Msa0851850 | 0.813183 | 2.911442e-51 | -8.615850e-47 |
Msa0025160 | Msa0851850 | 0.816111 | 6.543008e-52 | -8.615850e-47 |
Msa0032460 | Msa0851850 | 0.803791 | 2.944797e-49 | -8.615850e-47 |
Msa0033220 | Msa0851850 | 0.839985 | 1.141632e-57 | -8.615850e-47 |
Msa0040790 | Msa0851850 | 0.839155 | 1.876946e-57 | -8.615850e-47 |
Msa0042640 | Msa0851850 | 0.815366 | 9.593740e-52 | -8.615850e-47 |
Msa0044160 | Msa0851850 | 0.830038 | 3.676469e-55 | -8.615850e-47 |
Msa0050790 | Msa0851850 | 0.803447 | 3.471474e-49 | -8.615850e-47 |
Msa0063940 | Msa0851850 | 0.809054 | 2.287596e-50 | -8.615850e-47 |
Msa0067330 | Msa0851850 | 0.803555 | 3.296262e-49 | -8.615850e-47 |
Msa0077340 | Msa0851850 | 0.863668 | 2.112886e-64 | -8.615850e-47 |
Msa0077560 | Msa0851850 | 0.845047 | 5.181409e-59 | -8.615850e-47 |
Msa0079880 | Msa0851850 | 0.831490 | 1.621202e-55 | -8.615850e-47 |
Msa0080030 | Msa0851850 | 0.839911 | 1.193760e-57 | -8.615850e-47 |
Msa0098040 | Msa0851850 | 0.821349 | 4.232895e-53 | -8.615850e-47 |
Msa0108630 | Msa0851850 | 0.819348 | 1.217672e-52 | -8.615850e-47 |
Msa0610690 | Msa0851850 | 0.884269 | 2.214260e-71 | -8.615850e-47 |
Msa0617940 | Msa0851850 | 0.815933 | 7.170013e-52 | -8.615850e-47 |
Msa0619780 | Msa0851850 | 0.811716 | 6.090690e-51 | -8.615850e-47 |
Msa0630440 | Msa0851850 | 0.830898 | 2.266175e-55 | -8.615850e-47 |
Msa0651550 | Msa0851850 | 0.832903 | 7.246254e-56 | -8.615850e-47 |
Msa0652770 | Msa0851850 | 0.873885 | 1.039396e-67 | -8.615850e-47 |
Msa0657110 | Msa0851850 | -0.802040 | 6.775824e-49 | -8.615850e-47 |
Msa0660370 | Msa0851850 | 0.835549 | 1.572762e-56 | -8.615850e-47 |
Msa0662830 | Msa0851850 | 0.811706 | 6.120727e-51 | -8.615850e-47 |
Msa0674480 | Msa0851850 | 0.845010 | 5.301791e-59 | -8.615850e-47 |
Msa0692790 | Msa0851850 | 0.837527 | 4.930764e-57 | -8.615850e-47 |
Msa0693330 | Msa0851850 | 0.836831 | 7.430381e-57 | -8.615850e-47 |
Msa0702800 | Msa0851850 | 0.800009 | 1.761916e-48 | -8.615850e-47 |
Msa0703950 | Msa0851850 | 0.881924 | 1.601427e-70 | -8.615850e-47 |
Msa0706760 | Msa0851850 | 0.801549 | 8.544329e-49 | -8.615850e-47 |
Msa0709440 | Msa0851850 | 0.813119 | 3.006946e-51 | -8.615850e-47 |
Msa0711400 | Msa0851850 | 0.817351 | 3.448862e-52 | -8.615850e-47 |
Msa0716890 | Msa0851850 | 0.813555 | 2.412819e-51 | -8.615850e-47 |
Msa0719270 | Msa0851850 | 0.812346 | 4.441067e-51 | -8.615850e-47 |
Msa0723090 | Msa0851850 | 0.800333 | 1.514071e-48 | -8.615850e-47 |
Msa0726170 | Msa0851850 | -0.838558 | 2.678230e-57 | -8.615850e-47 |
Msa0733080 | Msa0851850 | 0.866289 | 3.178148e-65 | -8.615850e-47 |
Msa0751870 | Msa0851850 | 0.806716 | 7.187975e-50 | -8.615850e-47 |
Msa0754430 | Msa0851850 | 0.805886 | 1.075123e-49 | -8.615850e-47 |
Msa0765960 | Msa0851850 | -0.826009 | 3.432325e-54 | -8.615850e-47 |
Msa0774060 | Msa0851850 | 0.884337 | 2.089862e-71 | -8.615850e-47 |
Msa0780910 | Msa0851850 | 0.808150 | 3.567364e-50 | -8.615850e-47 |
Msa0792370 | Msa0851850 | 0.820291 | 7.414572e-53 | -8.615850e-47 |
Msa0795750 | Msa0851850 | 0.873456 | 1.449996e-67 | -8.615850e-47 |
Msa0811690 | Msa0851850 | 0.940486 | 2.151138e-100 | -8.615850e-47 |
Msa0813160 | Msa0851850 | 0.800635 | 1.313715e-48 | -8.615850e-47 |
Msa0821160 | Msa0851850 | 0.805023 | 1.630599e-49 | -8.615850e-47 |
Msa0828960 | Msa0851850 | 0.804306 | 2.301574e-49 | -8.615850e-47 |
Msa0833530 | Msa0851850 | 0.818502 | 1.896165e-52 | -8.615850e-47 |
Msa0838620 | Msa0851850 | -0.803583 | 3.252484e-49 | -8.615850e-47 |
Msa0123070 | Msa0851850 | 0.809017 | 2.329718e-50 | -8.615850e-47 |
Msa0123340 | Msa0851850 | 0.810886 | 9.221445e-51 | -8.615850e-47 |
Msa0124910 | Msa0851850 | 0.830297 | 3.178576e-55 | -8.615850e-47 |
Msa0125360 | Msa0851850 | 0.848926 | 4.487955e-60 | -8.615850e-47 |
Msa0127770 | Msa0851850 | 0.806680 | 7.313501e-50 | -8.615850e-47 |
Msa0142430 | Msa0851850 | 0.850383 | 1.759201e-60 | -8.615850e-47 |
Msa0146650 | Msa0851850 | 0.814915 | 1.207715e-51 | -8.615850e-47 |
Msa0161480 | Msa0851850 | 0.811970 | 5.362793e-51 | -8.615850e-47 |
Msa0165640 | Msa0851850 | 0.846658 | 1.891912e-59 | -8.615850e-47 |
Msa0169410 | Msa0851850 | 0.834065 | 3.717813e-56 | -8.615850e-47 |
Msa0173290 | Msa0851850 | 0.802976 | 4.344338e-49 | -8.615850e-47 |
Msa0176060 | Msa0851850 | 0.800631 | 1.316533e-48 | -8.615850e-47 |
Msa0183710 | Msa0851850 | 0.831626 | 1.500095e-55 | -8.615850e-47 |
Msa0184500 | Msa0851850 | 0.836884 | 7.202991e-57 | -8.615850e-47 |
Msa0189270 | Msa0851850 | 0.831039 | 2.091806e-55 | -8.615850e-47 |
Msa0195230 | Msa0851850 | 0.806558 | 7.759315e-50 | -8.615850e-47 |
Msa0195260 | Msa0851850 | 0.804828 | 1.790709e-49 | -8.615850e-47 |
Msa0203080 | Msa0851850 | 0.844969 | 5.438437e-59 | -8.615850e-47 |
Msa0204950 | Msa0851850 | 0.828423 | 9.064228e-55 | -8.615850e-47 |
Msa0209140 | Msa0851850 | 0.840224 | 9.890191e-58 | -8.615850e-47 |
Msa0230840 | Msa0851850 | 0.814434 | 1.543985e-51 | -8.615850e-47 |
Msa0231630 | Msa0851850 | 0.807808 | 4.217188e-50 | -8.615850e-47 |
Msa0365210 | Msa0851850 | 0.814160 | 1.774399e-51 | -8.615850e-47 |
Msa0369790 | Msa0851850 | 0.806365 | 8.522859e-50 | -8.615850e-47 |
Msa0375640 | Msa0851850 | 0.846447 | 2.160135e-59 | -8.615850e-47 |
Msa0380490 | Msa0851850 | 0.802915 | 4.472005e-49 | -8.615850e-47 |
Msa0402070 | Msa0851850 | -0.818936 | 1.510893e-52 | -8.615850e-47 |
Msa0412790 | Msa0851850 | 0.841959 | 3.461893e-58 | -8.615850e-47 |
Msa0424160 | Msa0851850 | 0.850766 | 1.373063e-60 | -8.615850e-47 |
Msa0426530 | Msa0851850 | 0.800754 | 1.242728e-48 | -8.615850e-47 |
Msa0430000 | Msa0851850 | 0.800129 | 1.665888e-48 | -8.615850e-47 |
Msa0432010 | Msa0851850 | 0.821458 | 3.994704e-53 | -8.615850e-47 |
Msa0437440 | Msa0851850 | -0.803453 | 3.460302e-49 | -8.615850e-47 |
Msa0437520 | Msa0851850 | 0.823426 | 1.393991e-53 | -8.615850e-47 |
Msa0440350 | Msa0851850 | 0.825945 | 3.554511e-54 | -8.615850e-47 |
Msa0447870 | Msa0851850 | 0.821690 | 3.531056e-53 | -8.615850e-47 |
Msa0453040 | Msa0851850 | 0.809763 | 1.610987e-50 | -8.615850e-47 |
Msa0464000 | Msa0851850 | 0.805010 | 1.641113e-49 | -8.615850e-47 |
Msa0465500 | Msa0851850 | 0.808100 | 3.655825e-50 | -8.615850e-47 |
Msa0468700 | Msa0851850 | 0.804869 | 1.755684e-49 | -8.615850e-47 |
Msa0479420 | Msa0851850 | 0.803860 | 2.849009e-49 | -8.615850e-47 |
Msa0481890 | Msa0851850 | 0.814021 | 1.904188e-51 | -8.615850e-47 |
Msa0246210 | Msa0851850 | 0.849265 | 3.614189e-60 | -8.615850e-47 |
Msa0249850 | Msa0851850 | 0.825344 | 4.935052e-54 | -8.615850e-47 |
Msa0269210 | Msa0851850 | 0.817695 | 2.885183e-52 | -8.615850e-47 |
Msa0276860 | Msa0851850 | 0.818084 | 2.357273e-52 | -8.615850e-47 |
Msa0281470 | Msa0851850 | 0.849769 | 2.613816e-60 | -8.615850e-47 |
Msa0284800 | Msa0851850 | 0.830826 | 2.359928e-55 | -8.615850e-47 |
Msa0288620 | Msa0851850 | 0.840385 | 8.976212e-58 | -8.615850e-47 |
Msa0307270 | Msa0851850 | 0.839071 | 1.973121e-57 | -8.615850e-47 |
Msa0307670 | Msa0851850 | 0.823172 | 1.598216e-53 | -8.615850e-47 |
Msa0313900 | Msa0851850 | 0.809885 | 1.516408e-50 | -8.615850e-47 |
Msa0315980 | Msa0851850 | 0.831674 | 1.460333e-55 | -8.615850e-47 |
Msa0320600 | Msa0851850 | 0.825573 | 4.353697e-54 | -8.615850e-47 |
Msa0326710 | Msa0851850 | 0.830477 | 2.873487e-55 | -8.615850e-47 |
Msa0330520 | Msa0851850 | 0.869462 | 3.041314e-66 | -8.615850e-47 |
Msa0332640 | Msa0851850 | 0.814504 | 1.489919e-51 | -8.615850e-47 |
Msa0336110 | Msa0851850 | 0.800678 | 1.287823e-48 | -8.615850e-47 |
Msa0354840 | Msa0851850 | 0.816132 | 6.475157e-52 | -8.615850e-47 |
Msa0354970 | Msa0851850 | -0.802839 | 4.636116e-49 | -8.615850e-47 |
Msa0355080 | Msa0851850 | -0.812412 | 4.295432e-51 | -8.615850e-47 |
Msa0484210 | Msa0851850 | -0.803608 | 3.214551e-49 | -8.615850e-47 |
Msa0500570 | Msa0851850 | 0.802422 | 5.652651e-49 | -8.615850e-47 |
Msa0509550 | Msa0851850 | 0.806336 | 8.642987e-50 | -8.615850e-47 |
Msa0513640 | Msa0851850 | 0.803317 | 3.692376e-49 | -8.615850e-47 |
Msa0514580 | Msa0851850 | 0.803337 | 3.657849e-49 | -8.615850e-47 |
Msa0515800 | Msa0851850 | 0.836960 | 6.886223e-57 | -8.615850e-47 |
Msa0517250 | Msa0851850 | 0.823450 | 1.375858e-53 | -8.615850e-47 |
Msa0519760 | Msa0851850 | 0.856362 | 3.387276e-62 | -8.615850e-47 |
Msa0519810 | Msa0851850 | 0.863817 | 1.899310e-64 | -8.615850e-47 |
Msa0519840 | Msa0851850 | 0.863603 | 2.212644e-64 | -8.615850e-47 |
Msa0529030 | Msa0851850 | 0.844710 | 6.388824e-59 | -8.615850e-47 |
Msa0566340 | Msa0851850 | 0.809904 | 1.502616e-50 | -8.615850e-47 |
Msa0567610 | Msa0851850 | 0.827967 | 1.167336e-54 | -8.615850e-47 |
Msa0574900 | Msa0851850 | 0.800084 | 1.701135e-48 | -8.615850e-47 |
Msa0576790 | Msa0851850 | 0.807679 | 4.493563e-50 | -8.615850e-47 |
Msa0579080 | Msa0851850 | 0.891694 | 3.143737e-74 | -8.615850e-47 |
Msa0579160 | Msa0851850 | 0.904857 | 7.913261e-80 | -8.615850e-47 |
Msa0579220 | Msa0851850 | 0.905687 | 3.297964e-80 | -8.615850e-47 |
Msa0591170 | Msa0851850 | 0.822190 | 2.704215e-53 | -8.615850e-47 |
Msa0851850 | Msa0865420 | 0.823145 | 1.621819e-53 | -8.615850e-47 |
Msa0851850 | Msa0878280 | 0.826950 | 2.047939e-54 | -8.615850e-47 |
Msa0851850 | Msa0880270 | 0.831532 | 1.582771e-55 | -8.615850e-47 |
Msa0851850 | Msa0894790 | 0.824133 | 9.519139e-54 | -8.615850e-47 |
Msa0851850 | Msa0921590 | 0.804649 | 1.951816e-49 | -8.615850e-47 |
Msa0851850 | Msa0930770 | 0.802154 | 6.419776e-49 | -8.615850e-47 |
Msa0851850 | Msa0944010 | 0.806544 | 7.812090e-50 | -8.615850e-47 |
Msa0851850 | Msa0945190 | 0.865844 | 4.395711e-65 | -8.615850e-47 |
Msa0851850 | Msa0956350 | 0.809430 | 1.899649e-50 | -8.615850e-47 |
Msa0851850 | Msa0960260 | 0.819124 | 1.369172e-52 | -8.615850e-47 |
Msa0851850 | Msa0982650 | 0.828588 | 8.269618e-55 | -8.615850e-47 |
Msa0851850 | Msa0994720 | 0.818486 | 1.912068e-52 | -8.615850e-47 |
Msa0851850 | Msa1021590 | 0.842510 | 2.474382e-58 | -8.615850e-47 |
Msa0851850 | Msa1022420 | 0.830663 | 2.586766e-55 | -8.615850e-47 |
Msa0851850 | Msa1025560 | 0.808795 | 2.598141e-50 | -8.615850e-47 |
Msa0851850 | Msa1032470 | 0.804750 | 1.859600e-49 | -8.615850e-47 |
Msa0851850 | Msa1041710 | 0.816140 | 6.446413e-52 | -8.615850e-47 |
Msa0851850 | Msa1042160 | 0.832840 | 7.514326e-56 | -8.615850e-47 |
Msa0851850 | Msa1042190 | 0.831349 | 1.755448e-55 | -8.615850e-47 |
Msa0851850 | Msa1044250 | 0.840886 | 6.637753e-58 | -8.615850e-47 |
Msa0851850 | Msa1072940 | 0.830991 | 2.149432e-55 | -8.615850e-47 |
Msa0851850 | Msa1074220 | 0.819512 | 1.116922e-52 | -8.615850e-47 |
Msa0851850 | Msa1074900 | 0.837985 | 3.762559e-57 | -8.615850e-47 |
Msa0851850 | Msa1077990 | 0.812358 | 4.412803e-51 | -8.615850e-47 |
Msa0851850 | Msa1080000 | 0.832397 | 9.679028e-56 | -8.615850e-47 |
Msa0851850 | Msa1082410 | 0.812718 | 3.682718e-51 | -8.615850e-47 |
Msa0851850 | Msa1084530 | 0.806121 | 9.592872e-50 | -8.615850e-47 |
Msa0851850 | Msa1102060 | -0.824434 | 8.091119e-54 | -8.615850e-47 |
Msa0851850 | Msa1104110 | 0.804543 | 2.053946e-49 | -8.615850e-47 |
Msa0851850 | Msa1105640 | 0.804500 | 2.096489e-49 | -8.615850e-47 |
Msa0851850 | Msa1106590 | 0.834098 | 3.646796e-56 | -8.615850e-47 |
Msa0851850 | Msa1109390 | 0.809131 | 2.201749e-50 | -8.615850e-47 |
Msa0851850 | Msa1114690 | 0.817080 | 3.970214e-52 | -8.615850e-47 |
Msa0851850 | Msa1125820 | 0.809707 | 1.656724e-50 | -8.615850e-47 |
Msa0851850 | Msa1125990 | 0.813374 | 2.643997e-51 | -8.615850e-47 |
Msa0851850 | Msa1133680 | 0.819093 | 1.391843e-52 | -8.615850e-47 |
Msa0851850 | Msa1145300 | 0.828419 | 9.084780e-55 | -8.615850e-47 |
Msa0851850 | Msa1145580 | 0.812737 | 3.646639e-51 | -8.615850e-47 |
Msa0851850 | Msa1147700 | 0.821514 | 3.876664e-53 | -8.615850e-47 |
Msa0851850 | Msa1148960 | 0.803601 | 3.224524e-49 | -8.615850e-47 |
Msa0851850 | Msa1160920 | 0.823389 | 1.422052e-53 | -8.615850e-47 |
Msa0851850 | Msa1162230 | 0.806687 | 7.289168e-50 | -8.615850e-47 |
Msa0851850 | Msa1167470 | 0.834006 | 3.846067e-56 | -8.615850e-47 |
Msa0851850 | Msa1171290 | 0.817508 | 3.180472e-52 | -8.615850e-47 |
Msa0851850 | Msa1194240 | 0.834556 | 2.798714e-56 | -8.615850e-47 |
Msa0851850 | Msa1207190 | 0.809954 | 1.465597e-50 | -8.615850e-47 |
Msa0851850 | Msa1210040 | 0.824753 | 6.804194e-54 | -8.615850e-47 |
Msa0851850 | Msa1213040 | 0.818409 | 1.990018e-52 | -8.615850e-47 |
Msa0851850 | Msa1216340 | 0.821057 | 4.942136e-53 | -8.615850e-47 |
Msa0851850 | Msa1219930 | 0.840267 | 9.637951e-58 | -8.615850e-47 |
Msa0851850 | Msa1236010 | 0.810044 | 1.401414e-50 | -8.615850e-47 |
Msa0851850 | Msa1251410 | 0.800664 | 1.296051e-48 | -8.615850e-47 |
Msa0851850 | Msa1254100 | 0.810208 | 1.292128e-50 | -8.615850e-47 |
Msa0851850 | Msa1257440 | 0.825441 | 4.679353e-54 | -8.615850e-47 |
Msa0851850 | Msa1259160 | 0.814804 | 1.278684e-51 | -8.615850e-47 |
Msa0851850 | Msa1260220 | 0.821862 | 3.221621e-53 | -8.615850e-47 |
Msa0851850 | Msa1262590 | 0.804749 | 1.860122e-49 | -8.615850e-47 |
Msa0851850 | Msa1263010 | 0.811769 | 5.933034e-51 | -8.615850e-47 |
Msa0851850 | Msa1268240 | 0.826526 | 2.584412e-54 | -8.615850e-47 |
Msa0851850 | Msa1283930 | 0.801567 | 8.471543e-49 | -8.615850e-47 |
Msa0851850 | Msa1290440 | 0.800028 | 1.746066e-48 | -8.615850e-47 |
Msa0851850 | Msa1299650 | 0.820830 | 5.574558e-53 | -8.615850e-47 |
Msa0851850 | Msa1305250 | 0.816789 | 4.613468e-52 | -8.615850e-47 |
Msa0851850 | Msa1306640 | 0.823007 | 1.746181e-53 | -8.615850e-47 |
Msa0851850 | Msa1316330 | 0.806504 | 7.965757e-50 | -8.615850e-47 |
Msa0851850 | Msa1323070 | 0.811431 | 7.026946e-51 | -8.615850e-47 |
Msa0851850 | Msa1327800 | 0.809124 | 2.209685e-50 | -8.615850e-47 |
Msa0851850 | Msa1349690 | 0.834606 | 2.718944e-56 | -8.615850e-47 |
Msa0851850 | Msa1358290 | 0.813529 | 2.443799e-51 | -8.615850e-47 |
Msa0851850 | Msa1359690 | 0.801020 | 1.096185e-48 | -8.615850e-47 |
Msa0851850 | Msa1365820 | 0.800957 | 1.129375e-48 | -8.615850e-47 |
Msa0851850 | Msa1366150 | 0.805652 | 1.203554e-49 | -8.615850e-47 |
Msa0851850 | Msa1368390 | 0.821074 | 4.897767e-53 | -8.615850e-47 |
Msa0851850 | Msa1368750 | 0.821999 | 2.994257e-53 | -8.615850e-47 |
Msa0851850 | Msa1371910 | 0.810659 | 1.032821e-50 | -8.615850e-47 |
Msa0851850 | Msa1374790 | 0.820211 | 7.731420e-53 | -8.615850e-47 |
Msa0851850 | Msa1375280 | 0.833509 | 5.120640e-56 | -8.615850e-47 |
Msa0851850 | Msa1389900 | 0.833445 | 5.311527e-56 | -8.615850e-47 |
Msa0851850 | Msa1391500 | 0.854960 | 8.688333e-62 | -8.615850e-47 |
Msa0851850 | Msa1392740 | 0.827465 | 1.541024e-54 | -8.615850e-47 |
Msa0851850 | Msa1393780 | 0.810876 | 9.267877e-51 | -8.615850e-47 |
Msa0851850 | Msa1396200 | -0.834178 | 3.482542e-56 | -8.615850e-47 |
Msa0851850 | Msa1398810 | 0.820784 | 5.710628e-53 | -8.615850e-47 |
Msa0851850 | Msa1405460 | 0.848932 | 4.471970e-60 | -8.615850e-47 |
Msa0851850 | Msa1406090 | 0.802084 | 6.635870e-49 | -8.615850e-47 |
Msa0851850 | Msa1407840 | 0.867233 | 1.591410e-65 | -8.615850e-47 |
Msa0851850 | Msa1409410 | 0.828483 | 8.766692e-55 | -8.615850e-47 |
Msa0851850 | Msa1410160 | 0.817863 | 2.644629e-52 | -8.615850e-47 |
Msa0851850 | Msa1412000 | 0.869129 | 3.902400e-66 | -8.615850e-47 |
Msa0851850 | Msa1414170 | 0.824201 | 9.176805e-54 | -8.615850e-47 |
Msa0851850 | Msa1418080 | 0.800485 | 1.409984e-48 | -8.615850e-47 |
Msa0851850 | Msa1422730 | 0.812774 | 3.579660e-51 | -8.615850e-47 |
Msa0851850 | Msa1422860 | 0.828813 | 7.296064e-55 | -8.615850e-47 |
Msa0851850 | Msa1427110 | 0.847835 | 8.992212e-60 | -8.615850e-47 |
Msa0851850 | Msa1437810 | 0.871034 | 9.288500e-67 | -8.615850e-47 |
Msa0851850 | Msa1440630 | 0.802009 | 6.875578e-49 | -8.615850e-47 |
Msa0851850 | Msa1447100 | 0.822545 | 2.237250e-53 | -8.615850e-47 |
Msa0851850 | Msa1449900 | 0.817782 | 2.757824e-52 | -8.615850e-47 |
Msa0851850 | Msa1451820 | 0.823680 | 1.216016e-53 | -8.615850e-47 |
Msa0851850 | Msa1454500 | 0.854741 | 1.005605e-61 | -8.615850e-47 |
Msa0851850 | Msa1457770 | 0.810667 | 1.028518e-50 | -8.615850e-47 |
Msa0851850 | Msa1457890 | 0.858361 | 8.683181e-63 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0851850 | MtrunA17_Chr5g0428141 | 88.608 | 316 | 13 | 2 | 1 | 293 | 1 | 316 | 0.0 | 535 |
Msa0851850 | MtrunA17_Chr8g0366881 | 57.801 | 282 | 91 | 9 | 32 | 290 | 38 | 314 | 1.37e-92 | 278 |
Msa0851850 | MtrunA17_Chr5g0411501 | 53.793 | 290 | 99 | 8 | 33 | 293 | 21 | 304 | 6.47e-87 | 263 |
Msa0851850 | MtrunA17_Chr2g0331411 | 42.997 | 307 | 114 | 11 | 29 | 290 | 2 | 292 | 1.74e-60 | 195 |
Msa0851850 | MtrunA17_Chr6g0486121 | 47.881 | 236 | 89 | 8 | 62 | 293 | 18 | 223 | 7.87e-57 | 184 |
Msa0851850 | MtrunA17_Chr8g0390281 | 44.177 | 249 | 109 | 8 | 62 | 293 | 27 | 262 | 3.43e-54 | 178 |
Msa0851850 | MtrunA17_Chr7g0260641 | 63.780 | 127 | 44 | 2 | 168 | 293 | 94 | 219 | 9.20e-48 | 160 |
Msa0851850 | MtrunA17_Chr1g0190711 | 61.194 | 134 | 47 | 3 | 165 | 293 | 89 | 222 | 1.13e-47 | 160 |
Msa0851850 | MtrunA17_Chr1g0184791 | 59.542 | 131 | 48 | 4 | 168 | 293 | 84 | 214 | 1.31e-44 | 152 |
Msa0851850 | MtrunA17_Chr1g0187921 | 57.812 | 128 | 52 | 2 | 168 | 293 | 78 | 205 | 3.89e-44 | 150 |
Msa0851850 | MtrunA17_Chr1g0184801 | 41.102 | 236 | 67 | 9 | 62 | 293 | 15 | 182 | 7.85e-37 | 130 |
Msa0851850 | MtrunA17_Chr1g0166011 | 37.607 | 234 | 74 | 7 | 60 | 293 | 2 | 163 | 2.62e-34 | 123 |
Msa0851850 | MtrunA17_Chr7g0260621 | 47.222 | 144 | 55 | 3 | 150 | 293 | 60 | 182 | 1.59e-33 | 122 |
Msa0851850 | MtrunA17_Chr1g0187961 | 49.275 | 138 | 43 | 5 | 157 | 293 | 48 | 159 | 2.21e-33 | 120 |
Msa0851850 | MtrunA17_Chr2g0332141 | 52.273 | 88 | 33 | 3 | 209 | 293 | 8 | 89 | 3.08e-22 | 89.7 |
Msa0851850 | MtrunA17_Chr2g0330951 | 38.125 | 160 | 69 | 5 | 159 | 293 | 85 | 239 | 1.28e-21 | 92.0 |
Msa0851850 | MtrunA17_Chr1g0183251 | 39.610 | 154 | 58 | 5 | 172 | 290 | 81 | 234 | 4.83e-21 | 90.5 |
Msa0851850 | MtrunA17_Chr4g0004181 | 43.902 | 123 | 42 | 3 | 171 | 293 | 52 | 147 | 5.40e-21 | 88.2 |
Msa0851850 | MtrunA17_Chr8g0340731 | 37.580 | 157 | 80 | 4 | 155 | 293 | 89 | 245 | 5.64e-21 | 90.5 |
Msa0851850 | MtrunA17_Chr4g0069561 | 32.117 | 137 | 63 | 6 | 163 | 293 | 56 | 168 | 1.29e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0851850 | AT2G22670.5 | 53.767 | 292 | 101 | 12 | 20 | 293 | 13 | 288 | 6.34e-81 | 248 |
Msa0851850 | AT2G22670.2 | 53.767 | 292 | 101 | 12 | 20 | 293 | 13 | 288 | 6.34e-81 | 248 |
Msa0851850 | AT2G22670.3 | 53.767 | 292 | 101 | 12 | 20 | 293 | 13 | 288 | 7.52e-81 | 248 |
Msa0851850 | AT2G22670.1 | 53.767 | 292 | 101 | 12 | 20 | 293 | 13 | 288 | 7.52e-81 | 248 |
Msa0851850 | AT2G22670.4 | 53.767 | 292 | 101 | 12 | 20 | 293 | 30 | 305 | 1.12e-80 | 248 |
Msa0851850 | AT5G65670.2 | 50.534 | 281 | 113 | 8 | 32 | 293 | 32 | 305 | 2.29e-74 | 232 |
Msa0851850 | AT5G65670.1 | 50.534 | 281 | 113 | 8 | 32 | 293 | 32 | 305 | 2.48e-74 | 231 |
Msa0851850 | AT4G29080.1 | 47.325 | 243 | 108 | 7 | 62 | 293 | 41 | 274 | 8.20e-57 | 186 |
Msa0851850 | AT4G14550.3 | 58.871 | 124 | 50 | 1 | 168 | 290 | 71 | 194 | 1.35e-44 | 150 |
Msa0851850 | AT4G14550.1 | 58.871 | 124 | 50 | 1 | 168 | 290 | 71 | 194 | 2.82e-44 | 151 |
Msa0851850 | AT4G14550.2 | 58.871 | 124 | 50 | 1 | 168 | 290 | 71 | 194 | 5.77e-44 | 150 |
Msa0851850 | AT3G04730.1 | 53.901 | 141 | 50 | 3 | 168 | 293 | 65 | 205 | 1.17e-40 | 142 |
Msa0851850 | AT1G04250.1 | 51.825 | 137 | 52 | 3 | 159 | 290 | 68 | 195 | 3.53e-40 | 140 |
Msa0851850 | AT3G23050.2 | 40.756 | 238 | 94 | 6 | 62 | 290 | 9 | 208 | 3.49e-39 | 137 |
Msa0851850 | AT3G23050.1 | 40.249 | 241 | 97 | 6 | 62 | 293 | 9 | 211 | 6.00e-39 | 137 |
Msa0851850 | AT1G04240.1 | 48.148 | 135 | 52 | 4 | 159 | 293 | 50 | 166 | 9.15e-35 | 125 |
Msa0851850 | AT1G04240.2 | 48.148 | 135 | 52 | 4 | 159 | 293 | 150 | 266 | 1.00e-33 | 125 |
Msa0851850 | AT5G43700.1 | 47.761 | 134 | 50 | 3 | 160 | 293 | 49 | 162 | 3.92e-32 | 118 |
Msa0851850 | AT3G23030.1 | 45.600 | 125 | 39 | 2 | 166 | 290 | 53 | 148 | 2.02e-28 | 108 |
Msa0851850 | AT3G23030.2 | 45.600 | 125 | 39 | 2 | 166 | 290 | 140 | 235 | 1.26e-27 | 108 |
Msa0851850 | AT1G52830.1 | 42.424 | 132 | 51 | 4 | 164 | 295 | 61 | 167 | 3.60e-27 | 105 |
Msa0851850 | AT4G14550.4 | 59.259 | 81 | 33 | 0 | 168 | 248 | 71 | 151 | 4.75e-26 | 102 |
Msa0851850 | AT3G15540.1 | 46.400 | 125 | 44 | 4 | 167 | 290 | 64 | 166 | 2.21e-25 | 100 |
Msa0851850 | AT2G33310.2 | 40.994 | 161 | 59 | 6 | 159 | 293 | 62 | 212 | 9.49e-25 | 100 |
Msa0851850 | AT1G15580.1 | 35.152 | 165 | 71 | 4 | 135 | 293 | 11 | 145 | 1.96e-24 | 97.4 |
Msa0851850 | AT4G28640.1 | 43.165 | 139 | 59 | 4 | 169 | 290 | 84 | 219 | 3.10e-24 | 99.0 |
Msa0851850 | AT4G28640.3 | 43.165 | 139 | 59 | 4 | 169 | 290 | 84 | 219 | 3.37e-24 | 99.0 |
Msa0851850 | AT4G28640.2 | 43.165 | 139 | 59 | 4 | 169 | 290 | 84 | 219 | 1.43e-23 | 98.6 |
Msa0851850 | AT4G14560.1 | 47.619 | 126 | 39 | 3 | 165 | 290 | 47 | 145 | 2.58e-23 | 94.4 |
Msa0851850 | AT2G33310.3 | 40.994 | 161 | 58 | 7 | 159 | 293 | 62 | 211 | 3.43e-23 | 96.3 |
Msa0851850 | AT2G33310.1 | 40.994 | 161 | 58 | 7 | 159 | 293 | 62 | 211 | 3.43e-23 | 96.3 |
Msa0851850 | AT1G04100.1 | 37.662 | 154 | 63 | 5 | 170 | 293 | 90 | 240 | 5.04e-22 | 93.2 |
Msa0851850 | AT3G23050.3 | 36.923 | 195 | 77 | 5 | 62 | 248 | 9 | 165 | 2.26e-21 | 89.4 |
Msa0851850 | AT1G04550.2 | 38.415 | 164 | 70 | 5 | 152 | 293 | 50 | 204 | 2.46e-21 | 90.9 |
Msa0851850 | AT3G16500.1 | 37.267 | 161 | 71 | 5 | 162 | 293 | 78 | 237 | 2.50e-21 | 91.7 |
Msa0851850 | AT3G16500.2 | 37.267 | 161 | 71 | 5 | 162 | 293 | 78 | 237 | 3.03e-21 | 91.3 |
Msa0851850 | AT1G51950.1 | 37.013 | 154 | 73 | 5 | 160 | 293 | 86 | 235 | 2.76e-20 | 88.6 |
Msa0851850 | AT3G17600.1 | 37.162 | 148 | 64 | 8 | 152 | 293 | 18 | 142 | 1.31e-15 | 73.6 |
Msa0851850 | AT5G25890.1 | 32.653 | 147 | 79 | 3 | 147 | 293 | 22 | 148 | 1.73e-14 | 70.9 |
Msa0851850 | AT3G62100.1 | 35.227 | 88 | 45 | 1 | 206 | 293 | 81 | 156 | 1.76e-11 | 62.4 |
Msa0851850 | AT2G46990.1 | 32.075 | 106 | 55 | 2 | 204 | 304 | 81 | 174 | 2.26e-11 | 62.0 |
Msa0851850 | AT3G62100.2 | 35.632 | 87 | 44 | 1 | 206 | 292 | 81 | 155 | 2.43e-11 | 61.6 |
Msa0851850 | AT2G46990.2 | 35.632 | 87 | 44 | 1 | 206 | 292 | 83 | 157 | 3.50e-11 | 60.8 |
Find 60 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTCACACTAAAATGTCTT+AGG | 0.148340 | 5_4:-42431380 | None:intergenic |
TGAAGAGGTTGATGGAAAAT+TGG | 0.178401 | 5_4:+42429574 | Msa0851850:CDS |
GGCAACATTCTCAAGCATTT+TGG | 0.180467 | 5_4:-42428965 | None:intergenic |
AAATCTGATGAATCTCTTTC+AGG | 0.213261 | 5_4:-42428568 | None:intergenic |
CCCATGTAGTTGAACTCTTT+TGG | 0.273911 | 5_4:-42428415 | None:intergenic |
GAAAGCAAACCAAGTCTTAA+TGG | 0.296319 | 5_4:+42429057 | Msa0851850:CDS |
TCTATCTATCTAACTGTCTA+TGG | 0.343074 | 5_4:+42431304 | Msa0851850:three_prime_UTR |
TAAAGCTACTGAACTTAGAT+TGG | 0.345821 | 5_4:+42428525 | Msa0851850:intron |
GAACTTAGATTGGGACTTCC+AGG | 0.346391 | 5_4:+42428535 | Msa0851850:CDS |
CTTAATGGTTCTGCAACTAA+TGG | 0.371208 | 5_4:+42429072 | Msa0851850:CDS |
ATCCACTGATGAACAATTAG+AGG | 0.372614 | 5_4:-42428446 | None:intergenic |
CTTTCAGGAGAAAGTGATCC+TGG | 0.402526 | 5_4:-42428553 | None:intergenic |
TTTCACACTAAAATGTCTTA+GGG | 0.405511 | 5_4:-42431379 | None:intergenic |
GAAGAGGTTGATGGAAAATT+GGG | 0.409009 | 5_4:+42429575 | Msa0851850:CDS |
TATTGCATTATATATGTTTG+TGG | 0.411150 | 5_4:+42431450 | Msa0851850:three_prime_UTR |
TGTGGCAGGGCACAGGTTGT+TGG | 0.411315 | 5_4:+42429494 | Msa0851850:intron |
AGAATATGTTATTACTTATG+AGG | 0.411394 | 5_4:+42429907 | Msa0851850:CDS |
TTCATTGTTCTTTGAAGCAG+TGG | 0.422775 | 5_4:-42429555 | None:intergenic |
AAAATGCTTGAGAATGTTGC+CGG | 0.428584 | 5_4:+42428967 | Msa0851850:CDS |
AAGCTGAGGGATCTGCTTCA+TGG | 0.432732 | 5_4:+42429881 | Msa0851850:CDS |
GGCCTCCAATAAGATCGTTT+AGG | 0.457342 | 5_4:+42429519 | Msa0851850:CDS |
GAACTAAGCAGTATCAATAA+TGG | 0.458186 | 5_4:+42431271 | Msa0851850:CDS |
AAGAACAATGAAGAGGTTGA+TGG | 0.459868 | 5_4:+42429566 | Msa0851850:CDS |
ATTGGTCTTGAGAGGCCTAA+TGG | 0.460399 | 5_4:+42429027 | Msa0851850:CDS |
TTGCTTTCACCAACACCATT+AGG | 0.462889 | 5_4:-42429042 | None:intergenic |
CTTAACTGTTGCTATTTCAT+CGG | 0.466939 | 5_4:-42429004 | None:intergenic |
TCATCACCTATTCCTAGCCT+TGG | 0.471158 | 5_4:-42428334 | None:intergenic |
GCAGGGCACAGGTTGTTGGT+TGG | 0.475629 | 5_4:+42429498 | Msa0851850:intron |
GAAATAGCAACAGTTAAGAT+TGG | 0.476375 | 5_4:+42429009 | Msa0851850:CDS |
TCTCTACCAAGGCTAGGAAT+AGG | 0.484039 | 5_4:+42428328 | Msa0851850:CDS |
TTCCTAAACGATCTTATTGG+AGG | 0.485580 | 5_4:-42429521 | None:intergenic |
GTTGATGGAAAATTGGGATC+AGG | 0.490761 | 5_4:+42429581 | Msa0851850:CDS |
AAAGCTACTGAACTTAGATT+GGG | 0.491159 | 5_4:+42428526 | Msa0851850:intron |
ATTACTTATGAGGATAAAGA+TGG | 0.497598 | 5_4:+42429917 | Msa0851850:CDS |
ACCAAAAGAGTTCAACTACA+TGG | 0.503124 | 5_4:+42428414 | Msa0851850:CDS |
TCTTATATGTCTTGTTGTGA+AGG | 0.508011 | 5_4:+42431405 | Msa0851850:three_prime_UTR |
ATGAGGATAAAGATGGTGAT+TGG | 0.518002 | 5_4:+42429924 | Msa0851850:CDS |
ATGTTCAGCTGTTTCACCAT+AGG | 0.526626 | 5_4:+42429710 | Msa0851850:CDS |
AATCTTGTGTGGCAGGGCAC+AGG | 0.532182 | 5_4:+42429487 | Msa0851850:intron |
CACCCTACTTACTTGCTAGC+AGG | 0.532961 | 5_4:-42429108 | None:intergenic |
GATGGTGATTGGATGCTTGT+GGG | 0.535428 | 5_4:+42429935 | Msa0851850:CDS |
TTTGTGAAGGTCAGCATGGA+TGG | 0.538161 | 5_4:+42429614 | Msa0851850:CDS |
ATCGGCTTTCACTTTCTGCC+CGG | 0.540054 | 5_4:-42428986 | None:intergenic |
TCAGGTCAATGTGAATCTCA+TGG | 0.548741 | 5_4:+42429836 | Msa0851850:intron |
CAGTTAAGATTGGTCTTGAG+AGG | 0.564900 | 5_4:+42429019 | Msa0851850:CDS |
GTTGCAGAACCATTAAGACT+TGG | 0.566322 | 5_4:-42429066 | None:intergenic |
ATGAAGCAGATCCCTCAGCT+TGG | 0.567500 | 5_4:-42429879 | None:intergenic |
AGATGGTGATTGGATGCTTG+TGG | 0.576179 | 5_4:+42429934 | Msa0851850:CDS |
ATCCTCTAATTGTTCATCAG+TGG | 0.580106 | 5_4:+42428444 | Msa0851850:CDS |
CTTGAGAGGCCTAATGGTGT+TGG | 0.583757 | 5_4:+42429033 | Msa0851850:CDS |
GTGATGTCTCTACCAAGGCT+AGG | 0.589347 | 5_4:+42428322 | None:intergenic |
AAATGCTTGAGAATGTTGCC+GGG | 0.605417 | 5_4:+42428968 | Msa0851850:CDS |
CCAAAAGAGTTCAACTACAT+GGG | 0.615578 | 5_4:+42428415 | Msa0851850:CDS |
TGCTTCAAAGAACAATGAAG+AGG | 0.621204 | 5_4:+42429559 | Msa0851850:CDS |
TGCTGAATGAAACCAAGCTG+AGG | 0.622855 | 5_4:+42429867 | Msa0851850:CDS |
GCTGAATGAAACCAAGCTGA+GGG | 0.626284 | 5_4:+42429868 | Msa0851850:CDS |
GATGGAAAATTGGGATCAGG+AGG | 0.633939 | 5_4:+42429584 | Msa0851850:CDS |
AGGAGGTGCTGTGTTTGTGA+AGG | 0.651647 | 5_4:+42429601 | Msa0851850:CDS |
TCATTGTGATGTCTCTACCA+AGG | 0.666331 | 5_4:+42428317 | None:intergenic |
TGTGTTTGTGAAGGTCAGCA+TGG | 0.667221 | 5_4:+42429610 | Msa0851850:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TCTACTTTTTTATAAAATAA+TGG | + | chr5_4:42428878-42428897 | Msa0851850:intron | 10.0% |
!!! | TTTTTATCAAAAATAGAAAT+TGG | - | chr5_4:42431147-42431166 | None:intergenic | 10.0% |
!!! | TCTTTAAAAGATTGAATTTT+TGG | - | chr5_4:42428481-42428500 | None:intergenic | 15.0% |
!!! | TTTAAGATTCAAATTACTTT+TGG | - | chr5_4:42428509-42428528 | None:intergenic | 15.0% |
!! | AAATTGTTAATTCAATCAAT+AGG | + | chr5_4:42428735-42428754 | Msa0851850:intron | 15.0% |
!! | AATTGTTAATTCAATCAATA+GGG | + | chr5_4:42428736-42428755 | Msa0851850:intron | 15.0% |
!!! | AAAAACTGTTTAACTTAATA+TGG | + | chr5_4:42431494-42431513 | Msa0851850:three_prime_UTR | 15.0% |
!!! | TAAAAACAATGTTACTTTGT+TGG | + | chr5_4:42428363-42428382 | Msa0851850:CDS | 20.0% |
!! | AAATCACAAAAATTGAAATG+CGG | - | chr5_4:42429301-42429320 | None:intergenic | 20.0% |
!! | AGAATATGTTATTACTTATG+AGG | + | chr5_4:42429907-42429926 | Msa0851850:CDS | 20.0% |
!!! | CACATTTTATTATCTTATCA+CGG | + | chr5_4:42430187-42430206 | Msa0851850:intron | 20.0% |
!!! | TTGTGATTTTAGTTTGAAAT+AGG | + | chr5_4:42430328-42430347 | Msa0851850:intron | 20.0% |
!! | TTCTATTAATATACCTTACA+TGG | - | chr5_4:42430358-42430377 | None:intergenic | 20.0% |
!! | ATGTAAGGTATATTAATAGA+AGG | + | chr5_4:42430357-42430376 | Msa0851850:intron | 20.0% |
!! | AATAAAAGCTTGAATGATAA+TGG | + | chr5_4:42430424-42430443 | Msa0851850:intron | 20.0% |
!! | AATGTGACTTCAAATTAAAA+TGG | + | chr5_4:42430505-42430524 | Msa0851850:intron | 20.0% |
!! | ACTAAATGAATATGTTACAT+GGG | + | chr5_4:42430689-42430708 | Msa0851850:intron | 20.0% |
!!! | TTTGATACGATTTTATTGAA+AGG | + | chr5_4:42430792-42430811 | Msa0851850:intron | 20.0% |
!!! | TTGATACGATTTTATTGAAA+GGG | + | chr5_4:42430793-42430812 | Msa0851850:intron | 20.0% |
!!! | AAAGTAAATTAAGTTGAAGT+AGG | - | chr5_4:42431123-42431142 | None:intergenic | 20.0% |
!! | TATTGCATTATATATGTTTG+TGG | + | chr5_4:42431450-42431469 | Msa0851850:three_prime_UTR | 20.0% |
!! | AAAGATGATCATCTTTTTGA+GGG | - | chr5_4:42428649-42428668 | None:intergenic | 25.0% |
!! | AAAAGATGATCATCTTTTTG+AGG | - | chr5_4:42428648-42428667 | None:intergenic | 25.0% |
!!! | TACTGCAAGGTTTTAAATTT+AGG | + | chr5_4:42429152-42429171 | Msa0851850:intron | 25.0% |
! | CTTAACAATGAAAATGAACT+CGG | + | chr5_4:42429450-42429469 | Msa0851850:intron | 25.0% |
!! | TTTTTCCTAAACGATCTTAT+TGG | - | chr5_4:42429527-42429546 | None:intergenic | 25.0% |
!!! | AAGTCTACTTTTCTCAAATA+CGG | - | chr5_4:42429644-42429663 | None:intergenic | 25.0% |
! | ATTACTTATGAGGATAAAGA+TGG | + | chr5_4:42429917-42429936 | Msa0851850:CDS | 25.0% |
!!! | TGATTTTAGTTTGAAATAGG+TGG | + | chr5_4:42430331-42430350 | Msa0851850:intron | 25.0% |
!! | TTTGAATTGGCTTAAATTGT+TGG | - | chr5_4:42430532-42430551 | None:intergenic | 25.0% |
! | CACTAAATGAATATGTTACA+TGG | + | chr5_4:42430688-42430707 | Msa0851850:intron | 25.0% |
! | CTAAATGAATATGTTACATG+GGG | + | chr5_4:42430690-42430709 | Msa0851850:intron | 25.0% |
! | AAATCAAAGTGAAGTAAACA+AGG | - | chr5_4:42430870-42430889 | None:intergenic | 25.0% |
! | GATTGATTGTGTTAAATGAA+TGG | - | chr5_4:42431020-42431039 | None:intergenic | 25.0% |
!! | CACATAATTTGTACTTGAAT+TGG | - | chr5_4:42431202-42431221 | None:intergenic | 25.0% |
! | TTTCACACTAAAATGTCTTA+GGG | - | chr5_4:42431382-42431401 | None:intergenic | 25.0% |
! | GAAAAAAGTGTGTGTTTGAA+TGG | + | chr5_4:42428385-42428404 | Msa0851850:CDS | 30.0% |
TAAAGCTACTGAACTTAGAT+TGG | + | chr5_4:42428525-42428544 | Msa0851850:intron | 30.0% | |
AAAGCTACTGAACTTAGATT+GGG | + | chr5_4:42428526-42428545 | Msa0851850:intron | 30.0% | |
AAATCTGATGAATCTCTTTC+AGG | - | chr5_4:42428571-42428590 | None:intergenic | 30.0% | |
!! | CTGTTTTAGGTAACAAAAGA+GGG | + | chr5_4:42428680-42428699 | Msa0851850:intron | 30.0% |
! | TACCTCTGAAAAAACATTCA+TGG | - | chr5_4:42428716-42428735 | None:intergenic | 30.0% |
ATTCAATCAATAGGGTATGA+TGG | + | chr5_4:42428744-42428763 | Msa0851850:intron | 30.0% | |
!! | CTTAACTGTTGCTATTTCAT+CGG | - | chr5_4:42429007-42429026 | None:intergenic | 30.0% |
GAAATAGCAACAGTTAAGAT+TGG | + | chr5_4:42429009-42429028 | Msa0851850:CDS | 30.0% | |
!!! | CTTTTTTTAGAAGCTTGGTT+TGG | + | chr5_4:42429427-42429446 | Msa0851850:intron | 30.0% |
AATAGTCTTTCAACGATTTG+AGG | + | chr5_4:42429768-42429787 | Msa0851850:intron | 30.0% | |
GTCTTCAATAATGCCAAAAA+TGG | - | chr5_4:42430393-42430412 | None:intergenic | 30.0% | |
ACCATTATTTCGTCTAACTA+CGG | - | chr5_4:42430577-42430596 | None:intergenic | 30.0% | |
ATGTTTGGAAATTGGAATCA+TGG | - | chr5_4:42430659-42430678 | None:intergenic | 30.0% | |
TGAAACGCAAAATTGAAAAC+AGG | - | chr5_4:42430733-42430752 | None:intergenic | 30.0% | |
AAATCGTATCAAATTCGCTA+TGG | - | chr5_4:42430785-42430804 | None:intergenic | 30.0% | |
ATGAGGAAAATTCTTAGAGA+GGG | + | chr5_4:42430816-42430835 | Msa0851850:intron | 30.0% | |
AGTTGAGATATATTAGGTGT+TGG | - | chr5_4:42430918-42430937 | None:intergenic | 30.0% | |
GCAAAGAGTTGAGATATATT+AGG | - | chr5_4:42430924-42430943 | None:intergenic | 30.0% | |
AATATATCTCAACTCTTTGC+AGG | + | chr5_4:42430924-42430943 | Msa0851850:intron | 30.0% | |
CAAGTACAAATTATGTGTTG+TGG | + | chr5_4:42431205-42431224 | Msa0851850:intron | 30.0% | |
!!! | TTACTTTTTTCAACTGCTCT+GGG | - | chr5_4:42431245-42431264 | None:intergenic | 30.0% |
!!! | TTTACTTTTTTCAACTGCTC+TGG | - | chr5_4:42431246-42431265 | None:intergenic | 30.0% |
CAGTTGAAAAAAGTAAAAGC+AGG | + | chr5_4:42431249-42431268 | Msa0851850:CDS | 30.0% | |
GAACTAAGCAGTATCAATAA+TGG | + | chr5_4:42431271-42431290 | Msa0851850:CDS | 30.0% | |
TCTATCTATCTAACTGTCTA+TGG | + | chr5_4:42431304-42431323 | Msa0851850:three_prime_UTR | 30.0% | |
CTTTCACACTAAAATGTCTT+AGG | - | chr5_4:42431383-42431402 | None:intergenic | 30.0% | |
! | TCTTATATGTCTTGTTGTGA+AGG | + | chr5_4:42431405-42431424 | Msa0851850:three_prime_UTR | 30.0% |
ACCAAAAGAGTTCAACTACA+TGG | + | chr5_4:42428414-42428433 | Msa0851850:CDS | 35.0% | |
CCAAAAGAGTTCAACTACAT+GGG | + | chr5_4:42428415-42428434 | Msa0851850:CDS | 35.0% | |
ATCCTCTAATTGTTCATCAG+TGG | + | chr5_4:42428444-42428463 | Msa0851850:CDS | 35.0% | |
ATCCACTGATGAACAATTAG+AGG | - | chr5_4:42428449-42428468 | None:intergenic | 35.0% | |
! | CTTTTGTTACCTAAAACAGC+AGG | - | chr5_4:42428679-42428698 | None:intergenic | 35.0% |
!! | GCTGTTTTAGGTAACAAAAG+AGG | + | chr5_4:42428679-42428698 | Msa0851850:intron | 35.0% |
!!! | TGCCATGAATGTTTTTTCAG+AGG | + | chr5_4:42428711-42428730 | Msa0851850:intron | 35.0% |
!!! | GGTATGATGGTTTTAAACTG+CGG | + | chr5_4:42428757-42428776 | Msa0851850:intron | 35.0% |
! | TACAGCTCACTATTAAGTTG+CGG | + | chr5_4:42428827-42428846 | Msa0851850:intron | 35.0% |
AAAATGCTTGAGAATGTTGC+CGG | + | chr5_4:42428967-42428986 | Msa0851850:CDS | 35.0% | |
GAAAGCAAACCAAGTCTTAA+TGG | + | chr5_4:42429057-42429076 | Msa0851850:CDS | 35.0% | |
! | CTTAATGGTTCTGCAACTAA+TGG | + | chr5_4:42429072-42429091 | Msa0851850:CDS | 35.0% |
TTTGTAAGTAACTGCGATTC+AGG | - | chr5_4:42429224-42429243 | None:intergenic | 35.0% | |
ATCGCAGTTACTTACAAATG+CGG | + | chr5_4:42429226-42429245 | Msa0851850:intron | 35.0% | |
CTTGAATCACGATTGTATCA+CGG | + | chr5_4:42429353-42429372 | Msa0851850:intron | 35.0% | |
!!! | GCGAACTTTTTTTAGAAGCT+TGG | + | chr5_4:42429422-42429441 | Msa0851850:intron | 35.0% |
GATGATTGATGAATCTTGTG+TGG | + | chr5_4:42429476-42429495 | Msa0851850:intron | 35.0% | |
TTCCTAAACGATCTTATTGG+AGG | - | chr5_4:42429524-42429543 | None:intergenic | 35.0% | |
!! | TTCATTGTTCTTTGAAGCAG+TGG | - | chr5_4:42429558-42429577 | None:intergenic | 35.0% |
TGCTTCAAAGAACAATGAAG+AGG | + | chr5_4:42429559-42429578 | Msa0851850:CDS | 35.0% | |
AAGAACAATGAAGAGGTTGA+TGG | + | chr5_4:42429566-42429585 | Msa0851850:CDS | 35.0% | |
!! | TGAAGAGGTTGATGGAAAAT+TGG | + | chr5_4:42429574-42429593 | Msa0851850:CDS | 35.0% |
!! | GAAGAGGTTGATGGAAAATT+GGG | + | chr5_4:42429575-42429594 | Msa0851850:CDS | 35.0% |
!! | TTTGAGGCAATTTTTGTGTC+TGG | + | chr5_4:42429784-42429803 | Msa0851850:intron | 35.0% |
GCTTATGTTGATGTGATTTC+AGG | + | chr5_4:42429818-42429837 | Msa0851850:intron | 35.0% | |
ATGAGGATAAAGATGGTGAT+TGG | + | chr5_4:42429924-42429943 | Msa0851850:CDS | 35.0% | |
AGTACATAAACTTACTCCCA+GGG | - | chr5_4:42429968-42429987 | None:intergenic | 35.0% | |
AAGTACATAAACTTACTCCC+AGG | - | chr5_4:42429969-42429988 | None:intergenic | 35.0% | |
TGGGAGTAAGTTTATGTACT+TGG | + | chr5_4:42429968-42429987 | Msa0851850:intron | 35.0% | |
!!! | AGGTAAGAAACTGCCATTTT+TGG | + | chr5_4:42430377-42430396 | Msa0851850:intron | 35.0% |
GCAGTACAAATAGTACAGTA+TGG | - | chr5_4:42430457-42430476 | None:intergenic | 35.0% | |
!!! | ACAAGCGCTAAGTTTTGAAT+TGG | - | chr5_4:42430545-42430564 | None:intergenic | 35.0% |
ATGACTGCATGTTTGGAAAT+TGG | - | chr5_4:42430667-42430686 | None:intergenic | 35.0% | |
TTAGTGTATGACTGCATGTT+TGG | - | chr5_4:42430674-42430693 | None:intergenic | 35.0% | |
! | CGATTTTATTGAAAGGGATG+AGG | + | chr5_4:42430799-42430818 | Msa0851850:intron | 35.0% |
GATGAGGAAAATTCTTAGAG+AGG | + | chr5_4:42430815-42430834 | Msa0851850:intron | 35.0% | |
GGATGTTTATTGATACATGC+AGG | + | chr5_4:42430945-42430964 | Msa0851850:intron | 35.0% | |
TGTTTATTGATACATGCAGG+AGG | + | chr5_4:42430948-42430967 | Msa0851850:intron | 35.0% | |
GGAATACTAACCTAAACCAA+TGG | - | chr5_4:42430999-42431018 | None:intergenic | 35.0% | |
!!! | TACTTTTTTCAACTGCTCTG+GGG | - | chr5_4:42431244-42431263 | None:intergenic | 35.0% |
! | CCCATGTAGTTGAACTCTTT+TGG | - | chr5_4:42428418-42428437 | None:intergenic | 40.0% |
!! | TCATCTTTTTGAGGGTGCAA+AGG | - | chr5_4:42428637-42428656 | None:intergenic | 40.0% |
!!! | GAATCAAAGCCTGCTGTTTT+AGG | + | chr5_4:42428667-42428686 | Msa0851850:intron | 40.0% |
TCCCTCTGAATTGATTATGC+AGG | + | chr5_4:42428924-42428943 | Msa0851850:intron | 40.0% | |
CCCTGCATAATCAATTCAGA+GGG | - | chr5_4:42428928-42428947 | None:intergenic | 40.0% | |
CCCTCTGAATTGATTATGCA+GGG | + | chr5_4:42428925-42428944 | Msa0851850:intron | 40.0% | |
CCTCTGAATTGATTATGCAG+GGG | + | chr5_4:42428926-42428945 | Msa0851850:intron | 40.0% | |
!!! | TTCTCAAGCATTTTGGAGCT+AGG | - | chr5_4:42428961-42428980 | None:intergenic | 40.0% |
! | GGCAACATTCTCAAGCATTT+TGG | - | chr5_4:42428968-42428987 | None:intergenic | 40.0% |
AAATGCTTGAGAATGTTGCC+GGG | + | chr5_4:42428968-42428987 | Msa0851850:CDS | 40.0% | |
!! | CAGTTAAGATTGGTCTTGAG+AGG | + | chr5_4:42429019-42429038 | Msa0851850:CDS | 40.0% |
TTGCTTTCACCAACACCATT+AGG | - | chr5_4:42429045-42429064 | None:intergenic | 40.0% | |
GTTGCAGAACCATTAAGACT+TGG | - | chr5_4:42429069-42429088 | None:intergenic | 40.0% | |
TGGCATTAGAGTTTACTGCA+AGG | + | chr5_4:42429139-42429158 | Msa0851850:intron | 40.0% | |
! | GACATCGTGGTTTTTGATGT+TGG | - | chr5_4:42429384-42429403 | None:intergenic | 40.0% |
ATTGATGAATCTTGTGTGGC+AGG | + | chr5_4:42429480-42429499 | Msa0851850:intron | 40.0% | |
TTGATGAATCTTGTGTGGCA+GGG | + | chr5_4:42429481-42429500 | Msa0851850:intron | 40.0% | |
! | GTTGATGGAAAATTGGGATC+AGG | + | chr5_4:42429581-42429600 | Msa0851850:CDS | 40.0% |
! | ATGTTCAGCTGTTTCACCAT+AGG | + | chr5_4:42429710-42429729 | Msa0851850:CDS | 40.0% |
AACCTATTCCTACCTACCTA+TGG | - | chr5_4:42429729-42429748 | None:intergenic | 40.0% | |
TCAGGTCAATGTGAATCTCA+TGG | + | chr5_4:42429836-42429855 | Msa0851850:intron | 40.0% | |
CGATTAATGAAGCACAGACA+CGG | + | chr5_4:42430003-42430022 | Msa0851850:intron | 40.0% | |
TTGAATGTAACCACGTGTGT+TGG | + | chr5_4:42430077-42430096 | Msa0851850:intron | 40.0% | |
TGAAATAGGTGGTCCATGTA+AGG | + | chr5_4:42430342-42430361 | Msa0851850:intron | 40.0% | |
CTGTACTATTTGTACTGCGT+TGG | + | chr5_4:42430459-42430478 | Msa0851850:intron | 40.0% | |
GCCGTAGTTAGACGAAATAA+TGG | + | chr5_4:42430573-42430592 | Msa0851850:intron | 40.0% | |
GAATATGTTACATGGGGCTT+AGG | + | chr5_4:42430696-42430715 | Msa0851850:intron | 40.0% | |
!! | GGTGTTGGAATTAGTTTGCA+GGG | - | chr5_4:42430903-42430922 | None:intergenic | 40.0% |
!! | AGGTGTTGGAATTAGTTTGC+AGG | - | chr5_4:42430904-42430923 | None:intergenic | 40.0% |
!!! | ACTTTTTTCAACTGCTCTGG+GGG | - | chr5_4:42431243-42431262 | None:intergenic | 40.0% |
TCTCTACCAAGGCTAGGAAT+AGG | + | chr5_4:42428328-42428347 | Msa0851850:CDS | 45.0% | |
TCATCACCTATTCCTAGCCT+TGG | - | chr5_4:42428337-42428356 | None:intergenic | 45.0% | |
GAACTTAGATTGGGACTTCC+AGG | + | chr5_4:42428535-42428554 | Msa0851850:CDS | 45.0% | |
CTTTCAGGAGAAAGTGATCC+TGG | - | chr5_4:42428556-42428575 | None:intergenic | 45.0% | |
! | TGAGGGTGCAAAGGAAAAAG+AGG | - | chr5_4:42428628-42428647 | None:intergenic | 45.0% |
CCCCTGCATAATCAATTCAG+AGG | - | chr5_4:42428929-42428948 | None:intergenic | 45.0% | |
!! | ATTGGTCTTGAGAGGCCTAA+TGG | + | chr5_4:42429027-42429046 | Msa0851850:CDS | 45.0% |
CTCCTGCTAGCAAGTAAGTA+GGG | + | chr5_4:42429106-42429125 | Msa0851850:intron | 45.0% | |
GTAAGTAGGGTGGTGTGAAT+TGG | + | chr5_4:42429119-42429138 | Msa0851850:intron | 45.0% | |
CTCAGATTGCGGTCAAATAG+TGG | + | chr5_4:42429275-42429294 | Msa0851850:intron | 45.0% | |
CATCAAAAACCACGATGTCG+CGG | + | chr5_4:42429385-42429404 | Msa0851850:intron | 45.0% | |
AAAGTTCGCAACCGAAGTCT+GGG | - | chr5_4:42429411-42429430 | None:intergenic | 45.0% | |
AAAAGTTCGCAACCGAAGTC+TGG | - | chr5_4:42429412-42429431 | None:intergenic | 45.0% | |
GGCCTCCAATAAGATCGTTT+AGG | + | chr5_4:42429519-42429538 | Msa0851850:CDS | 45.0% | |
GATGGAAAATTGGGATCAGG+AGG | + | chr5_4:42429584-42429603 | Msa0851850:CDS | 45.0% | |
TGTGTTTGTGAAGGTCAGCA+TGG | + | chr5_4:42429610-42429629 | Msa0851850:CDS | 45.0% | |
TTTGTGAAGGTCAGCATGGA+TGG | + | chr5_4:42429614-42429633 | Msa0851850:CDS | 45.0% | |
! | TCAGCTGTTTCACCATAGGT+AGG | + | chr5_4:42429714-42429733 | Msa0851850:intron | 45.0% |
CTGTTTCACCATAGGTAGGT+AGG | + | chr5_4:42429718-42429737 | Msa0851850:intron | 45.0% | |
CACCATAGGTAGGTAGGAAT+AGG | + | chr5_4:42429724-42429743 | Msa0851850:intron | 45.0% | |
TGCTGAATGAAACCAAGCTG+AGG | + | chr5_4:42429867-42429886 | Msa0851850:CDS | 45.0% | |
GCTGAATGAAACCAAGCTGA+GGG | + | chr5_4:42429868-42429887 | Msa0851850:CDS | 45.0% | |
AGATGGTGATTGGATGCTTG+TGG | + | chr5_4:42429934-42429953 | Msa0851850:CDS | 45.0% | |
GATGGTGATTGGATGCTTGT+GGG | + | chr5_4:42429935-42429954 | Msa0851850:CDS | 45.0% | |
ACTACCAATGTCGACGATGT+CGG | - | chr5_4:42430037-42430056 | None:intergenic | 45.0% | |
! | ATGAAGAGCTCTGATGCCAT+TGG | + | chr5_4:42430980-42430999 | Msa0851850:intron | 45.0% |
!! | AGCTCTGATGCCATTGGTTT+AGG | + | chr5_4:42430986-42431005 | Msa0851850:intron | 45.0% |
! | ATCGGCTTTCACTTTCTGCC+CGG | - | chr5_4:42428989-42429008 | None:intergenic | 50.0% |
CTTGAGAGGCCTAATGGTGT+TGG | + | chr5_4:42429033-42429052 | Msa0851850:CDS | 50.0% | |
GCTCCTGCTAGCAAGTAAGT+AGG | + | chr5_4:42429105-42429124 | Msa0851850:intron | 50.0% | |
! | CACCCTACTTACTTGCTAGC+AGG | - | chr5_4:42429111-42429130 | None:intergenic | 50.0% |
CTGCTAGCAAGTAAGTAGGG+TGG | + | chr5_4:42429109-42429128 | Msa0851850:intron | 50.0% | |
CAATCTGAGCTGCGACATCA+TGG | - | chr5_4:42429264-42429283 | None:intergenic | 50.0% | |
TGATGTCGCAGCTCAGATTG+CGG | + | chr5_4:42429264-42429283 | Msa0851850:intron | 50.0% | |
!! | AGGAGGTGCTGTGTTTGTGA+AGG | + | chr5_4:42429601-42429620 | Msa0851850:CDS | 50.0% |
ATGAAGCAGATCCCTCAGCT+TGG | - | chr5_4:42429882-42429901 | None:intergenic | 50.0% | |
AAGCTGAGGGATCTGCTTCA+TGG | + | chr5_4:42429881-42429900 | Msa0851850:CDS | 50.0% | |
!! | CACGTGTGTTGGTGTTGTGT+CGG | + | chr5_4:42430088-42430107 | Msa0851850:intron | 50.0% |
AATCTTGTGTGGCAGGGCAC+AGG | + | chr5_4:42429487-42429506 | Msa0851850:intron | 55.0% | |
TGCTTGTGGGTGATGTTCCC+TGG | + | chr5_4:42429948-42429967 | Msa0851850:intron | 55.0% | |
GCTTGTGGGTGATGTTCCCT+GGG | + | chr5_4:42429949-42429968 | Msa0851850:intron | 55.0% | |
GACACCGACATCGTCGACAT+TGG | + | chr5_4:42430030-42430049 | Msa0851850:intron | 55.0% | |
CGACACAACACCAACACACG+TGG | - | chr5_4:42430090-42430109 | None:intergenic | 55.0% | |
TGTGGCAGGGCACAGGTTGT+TGG | + | chr5_4:42429494-42429513 | Msa0851850:intron | 60.0% | |
GCAGGGCACAGGTTGTTGGT+TGG | + | chr5_4:42429498-42429517 | Msa0851850:intron | 60.0% | |
!! | CTGCTCTGGGGGCTGCAAAA+TGG | - | chr5_4:42431232-42431251 | None:intergenic | 60.0% |
AAGTCTGGGCCGCGACATCG+TGG | - | chr5_4:42429397-42429416 | None:intergenic | 65.0% | |
CGATGTCGCGGCCCAGACTT+CGG | + | chr5_4:42429397-42429416 | Msa0851850:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_4 | gene | 42428325 | 42431564 | 42428325 | ID=Msa0851850;Name=Msa0851850 |
chr5_4 | mRNA | 42428325 | 42431564 | 42428325 | ID=Msa0851850-mRNA-1;Parent=Msa0851850;Name=Msa0851850-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.4|0.5|1|0.6|0.33|6|274|304 |
chr5_4 | exon | 42428325 | 42428511 | 42428325 | ID=Msa0851850-mRNA-1:exon:13458;Parent=Msa0851850-mRNA-1 |
chr5_4 | exon | 42428530 | 42428681 | 42428530 | ID=Msa0851850-mRNA-1:exon:13459;Parent=Msa0851850-mRNA-1 |
chr5_4 | exon | 42428946 | 42429118 | 42428946 | ID=Msa0851850-mRNA-1:exon:13460;Parent=Msa0851850-mRNA-1 |
chr5_4 | exon | 42429502 | 42429731 | 42429502 | ID=Msa0851850-mRNA-1:exon:13461;Parent=Msa0851850-mRNA-1 |
chr5_4 | exon | 42429840 | 42429961 | 42429840 | ID=Msa0851850-mRNA-1:exon:13462;Parent=Msa0851850-mRNA-1 |
chr5_4 | exon | 42431240 | 42431564 | 42431240 | ID=Msa0851850-mRNA-1:exon:13463;Parent=Msa0851850-mRNA-1 |
chr5_4 | CDS | 42428325 | 42428511 | 42428325 | ID=Msa0851850-mRNA-1:cds;Parent=Msa0851850-mRNA-1 |
chr5_4 | CDS | 42428530 | 42428681 | 42428530 | ID=Msa0851850-mRNA-1:cds;Parent=Msa0851850-mRNA-1 |
chr5_4 | CDS | 42428946 | 42429118 | 42428946 | ID=Msa0851850-mRNA-1:cds;Parent=Msa0851850-mRNA-1 |
chr5_4 | CDS | 42429502 | 42429731 | 42429502 | ID=Msa0851850-mRNA-1:cds;Parent=Msa0851850-mRNA-1 |
chr5_4 | CDS | 42429840 | 42429961 | 42429840 | ID=Msa0851850-mRNA-1:cds;Parent=Msa0851850-mRNA-1 |
chr5_4 | CDS | 42431240 | 42431290 | 42431240 | ID=Msa0851850-mRNA-1:cds;Parent=Msa0851850-mRNA-1 |
chr5_4 | three_prime_UTR | 42431291 | 42431564 | 42431291 | ID=Msa0851850-mRNA-1:three_prime_utr;Parent=Msa0851850-mRNA-1 |
Gene Sequence |
Protein sequence |