AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0851850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0851850 MtrunA17_Chr5g0428141 88.608 316 13 2 1 293 1 316 0.0 535
Msa0851850 MtrunA17_Chr8g0366881 57.801 282 91 9 32 290 38 314 1.37e-92 278
Msa0851850 MtrunA17_Chr5g0411501 53.793 290 99 8 33 293 21 304 6.47e-87 263
Msa0851850 MtrunA17_Chr2g0331411 42.997 307 114 11 29 290 2 292 1.74e-60 195
Msa0851850 MtrunA17_Chr6g0486121 47.881 236 89 8 62 293 18 223 7.87e-57 184
Msa0851850 MtrunA17_Chr8g0390281 44.177 249 109 8 62 293 27 262 3.43e-54 178
Msa0851850 MtrunA17_Chr7g0260641 63.780 127 44 2 168 293 94 219 9.20e-48 160
Msa0851850 MtrunA17_Chr1g0190711 61.194 134 47 3 165 293 89 222 1.13e-47 160
Msa0851850 MtrunA17_Chr1g0184791 59.542 131 48 4 168 293 84 214 1.31e-44 152
Msa0851850 MtrunA17_Chr1g0187921 57.812 128 52 2 168 293 78 205 3.89e-44 150
Msa0851850 MtrunA17_Chr1g0184801 41.102 236 67 9 62 293 15 182 7.85e-37 130
Msa0851850 MtrunA17_Chr1g0166011 37.607 234 74 7 60 293 2 163 2.62e-34 123
Msa0851850 MtrunA17_Chr7g0260621 47.222 144 55 3 150 293 60 182 1.59e-33 122
Msa0851850 MtrunA17_Chr1g0187961 49.275 138 43 5 157 293 48 159 2.21e-33 120
Msa0851850 MtrunA17_Chr2g0332141 52.273 88 33 3 209 293 8 89 3.08e-22 89.7
Msa0851850 MtrunA17_Chr2g0330951 38.125 160 69 5 159 293 85 239 1.28e-21 92.0
Msa0851850 MtrunA17_Chr1g0183251 39.610 154 58 5 172 290 81 234 4.83e-21 90.5
Msa0851850 MtrunA17_Chr4g0004181 43.902 123 42 3 171 293 52 147 5.40e-21 88.2
Msa0851850 MtrunA17_Chr8g0340731 37.580 157 80 4 155 293 89 245 5.64e-21 90.5
Msa0851850 MtrunA17_Chr4g0069561 32.117 137 63 6 163 293 56 168 1.29e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0851850 AT2G22670.5 53.767 292 101 12 20 293 13 288 6.34e-81 248
Msa0851850 AT2G22670.2 53.767 292 101 12 20 293 13 288 6.34e-81 248
Msa0851850 AT2G22670.3 53.767 292 101 12 20 293 13 288 7.52e-81 248
Msa0851850 AT2G22670.1 53.767 292 101 12 20 293 13 288 7.52e-81 248
Msa0851850 AT2G22670.4 53.767 292 101 12 20 293 30 305 1.12e-80 248
Msa0851850 AT5G65670.2 50.534 281 113 8 32 293 32 305 2.29e-74 232
Msa0851850 AT5G65670.1 50.534 281 113 8 32 293 32 305 2.48e-74 231
Msa0851850 AT4G29080.1 47.325 243 108 7 62 293 41 274 8.20e-57 186
Msa0851850 AT4G14550.3 58.871 124 50 1 168 290 71 194 1.35e-44 150
Msa0851850 AT4G14550.1 58.871 124 50 1 168 290 71 194 2.82e-44 151
Msa0851850 AT4G14550.2 58.871 124 50 1 168 290 71 194 5.77e-44 150
Msa0851850 AT3G04730.1 53.901 141 50 3 168 293 65 205 1.17e-40 142
Msa0851850 AT1G04250.1 51.825 137 52 3 159 290 68 195 3.53e-40 140
Msa0851850 AT3G23050.2 40.756 238 94 6 62 290 9 208 3.49e-39 137
Msa0851850 AT3G23050.1 40.249 241 97 6 62 293 9 211 6.00e-39 137
Msa0851850 AT1G04240.1 48.148 135 52 4 159 293 50 166 9.15e-35 125
Msa0851850 AT1G04240.2 48.148 135 52 4 159 293 150 266 1.00e-33 125
Msa0851850 AT5G43700.1 47.761 134 50 3 160 293 49 162 3.92e-32 118
Msa0851850 AT3G23030.1 45.600 125 39 2 166 290 53 148 2.02e-28 108
Msa0851850 AT3G23030.2 45.600 125 39 2 166 290 140 235 1.26e-27 108
Msa0851850 AT1G52830.1 42.424 132 51 4 164 295 61 167 3.60e-27 105
Msa0851850 AT4G14550.4 59.259 81 33 0 168 248 71 151 4.75e-26 102
Msa0851850 AT3G15540.1 46.400 125 44 4 167 290 64 166 2.21e-25 100
Msa0851850 AT2G33310.2 40.994 161 59 6 159 293 62 212 9.49e-25 100
Msa0851850 AT1G15580.1 35.152 165 71 4 135 293 11 145 1.96e-24 97.4
Msa0851850 AT4G28640.1 43.165 139 59 4 169 290 84 219 3.10e-24 99.0
Msa0851850 AT4G28640.3 43.165 139 59 4 169 290 84 219 3.37e-24 99.0
Msa0851850 AT4G28640.2 43.165 139 59 4 169 290 84 219 1.43e-23 98.6
Msa0851850 AT4G14560.1 47.619 126 39 3 165 290 47 145 2.58e-23 94.4
Msa0851850 AT2G33310.3 40.994 161 58 7 159 293 62 211 3.43e-23 96.3
Msa0851850 AT2G33310.1 40.994 161 58 7 159 293 62 211 3.43e-23 96.3
Msa0851850 AT1G04100.1 37.662 154 63 5 170 293 90 240 5.04e-22 93.2
Msa0851850 AT3G23050.3 36.923 195 77 5 62 248 9 165 2.26e-21 89.4
Msa0851850 AT1G04550.2 38.415 164 70 5 152 293 50 204 2.46e-21 90.9
Msa0851850 AT3G16500.1 37.267 161 71 5 162 293 78 237 2.50e-21 91.7
Msa0851850 AT3G16500.2 37.267 161 71 5 162 293 78 237 3.03e-21 91.3
Msa0851850 AT1G51950.1 37.013 154 73 5 160 293 86 235 2.76e-20 88.6
Msa0851850 AT3G17600.1 37.162 148 64 8 152 293 18 142 1.31e-15 73.6
Msa0851850 AT5G25890.1 32.653 147 79 3 147 293 22 148 1.73e-14 70.9
Msa0851850 AT3G62100.1 35.227 88 45 1 206 293 81 156 1.76e-11 62.4
Msa0851850 AT2G46990.1 32.075 106 55 2 204 304 81 174 2.26e-11 62.0
Msa0851850 AT3G62100.2 35.632 87 44 1 206 292 81 155 2.43e-11 61.6
Msa0851850 AT2G46990.2 35.632 87 44 1 206 292 83 157 3.50e-11 60.8

Find 60 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCACACTAAAATGTCTT+AGG 0.148340 5_4:-42431380 None:intergenic
TGAAGAGGTTGATGGAAAAT+TGG 0.178401 5_4:+42429574 Msa0851850:CDS
GGCAACATTCTCAAGCATTT+TGG 0.180467 5_4:-42428965 None:intergenic
AAATCTGATGAATCTCTTTC+AGG 0.213261 5_4:-42428568 None:intergenic
CCCATGTAGTTGAACTCTTT+TGG 0.273911 5_4:-42428415 None:intergenic
GAAAGCAAACCAAGTCTTAA+TGG 0.296319 5_4:+42429057 Msa0851850:CDS
TCTATCTATCTAACTGTCTA+TGG 0.343074 5_4:+42431304 Msa0851850:three_prime_UTR
TAAAGCTACTGAACTTAGAT+TGG 0.345821 5_4:+42428525 Msa0851850:intron
GAACTTAGATTGGGACTTCC+AGG 0.346391 5_4:+42428535 Msa0851850:CDS
CTTAATGGTTCTGCAACTAA+TGG 0.371208 5_4:+42429072 Msa0851850:CDS
ATCCACTGATGAACAATTAG+AGG 0.372614 5_4:-42428446 None:intergenic
CTTTCAGGAGAAAGTGATCC+TGG 0.402526 5_4:-42428553 None:intergenic
TTTCACACTAAAATGTCTTA+GGG 0.405511 5_4:-42431379 None:intergenic
GAAGAGGTTGATGGAAAATT+GGG 0.409009 5_4:+42429575 Msa0851850:CDS
TATTGCATTATATATGTTTG+TGG 0.411150 5_4:+42431450 Msa0851850:three_prime_UTR
TGTGGCAGGGCACAGGTTGT+TGG 0.411315 5_4:+42429494 Msa0851850:intron
AGAATATGTTATTACTTATG+AGG 0.411394 5_4:+42429907 Msa0851850:CDS
TTCATTGTTCTTTGAAGCAG+TGG 0.422775 5_4:-42429555 None:intergenic
AAAATGCTTGAGAATGTTGC+CGG 0.428584 5_4:+42428967 Msa0851850:CDS
AAGCTGAGGGATCTGCTTCA+TGG 0.432732 5_4:+42429881 Msa0851850:CDS
GGCCTCCAATAAGATCGTTT+AGG 0.457342 5_4:+42429519 Msa0851850:CDS
GAACTAAGCAGTATCAATAA+TGG 0.458186 5_4:+42431271 Msa0851850:CDS
AAGAACAATGAAGAGGTTGA+TGG 0.459868 5_4:+42429566 Msa0851850:CDS
ATTGGTCTTGAGAGGCCTAA+TGG 0.460399 5_4:+42429027 Msa0851850:CDS
TTGCTTTCACCAACACCATT+AGG 0.462889 5_4:-42429042 None:intergenic
CTTAACTGTTGCTATTTCAT+CGG 0.466939 5_4:-42429004 None:intergenic
TCATCACCTATTCCTAGCCT+TGG 0.471158 5_4:-42428334 None:intergenic
GCAGGGCACAGGTTGTTGGT+TGG 0.475629 5_4:+42429498 Msa0851850:intron
GAAATAGCAACAGTTAAGAT+TGG 0.476375 5_4:+42429009 Msa0851850:CDS
TCTCTACCAAGGCTAGGAAT+AGG 0.484039 5_4:+42428328 Msa0851850:CDS
TTCCTAAACGATCTTATTGG+AGG 0.485580 5_4:-42429521 None:intergenic
GTTGATGGAAAATTGGGATC+AGG 0.490761 5_4:+42429581 Msa0851850:CDS
AAAGCTACTGAACTTAGATT+GGG 0.491159 5_4:+42428526 Msa0851850:intron
ATTACTTATGAGGATAAAGA+TGG 0.497598 5_4:+42429917 Msa0851850:CDS
ACCAAAAGAGTTCAACTACA+TGG 0.503124 5_4:+42428414 Msa0851850:CDS
TCTTATATGTCTTGTTGTGA+AGG 0.508011 5_4:+42431405 Msa0851850:three_prime_UTR
ATGAGGATAAAGATGGTGAT+TGG 0.518002 5_4:+42429924 Msa0851850:CDS
ATGTTCAGCTGTTTCACCAT+AGG 0.526626 5_4:+42429710 Msa0851850:CDS
AATCTTGTGTGGCAGGGCAC+AGG 0.532182 5_4:+42429487 Msa0851850:intron
CACCCTACTTACTTGCTAGC+AGG 0.532961 5_4:-42429108 None:intergenic
GATGGTGATTGGATGCTTGT+GGG 0.535428 5_4:+42429935 Msa0851850:CDS
TTTGTGAAGGTCAGCATGGA+TGG 0.538161 5_4:+42429614 Msa0851850:CDS
ATCGGCTTTCACTTTCTGCC+CGG 0.540054 5_4:-42428986 None:intergenic
TCAGGTCAATGTGAATCTCA+TGG 0.548741 5_4:+42429836 Msa0851850:intron
CAGTTAAGATTGGTCTTGAG+AGG 0.564900 5_4:+42429019 Msa0851850:CDS
GTTGCAGAACCATTAAGACT+TGG 0.566322 5_4:-42429066 None:intergenic
ATGAAGCAGATCCCTCAGCT+TGG 0.567500 5_4:-42429879 None:intergenic
AGATGGTGATTGGATGCTTG+TGG 0.576179 5_4:+42429934 Msa0851850:CDS
ATCCTCTAATTGTTCATCAG+TGG 0.580106 5_4:+42428444 Msa0851850:CDS
CTTGAGAGGCCTAATGGTGT+TGG 0.583757 5_4:+42429033 Msa0851850:CDS
GTGATGTCTCTACCAAGGCT+AGG 0.589347 5_4:+42428322 None:intergenic
AAATGCTTGAGAATGTTGCC+GGG 0.605417 5_4:+42428968 Msa0851850:CDS
CCAAAAGAGTTCAACTACAT+GGG 0.615578 5_4:+42428415 Msa0851850:CDS
TGCTTCAAAGAACAATGAAG+AGG 0.621204 5_4:+42429559 Msa0851850:CDS
TGCTGAATGAAACCAAGCTG+AGG 0.622855 5_4:+42429867 Msa0851850:CDS
GCTGAATGAAACCAAGCTGA+GGG 0.626284 5_4:+42429868 Msa0851850:CDS
GATGGAAAATTGGGATCAGG+AGG 0.633939 5_4:+42429584 Msa0851850:CDS
AGGAGGTGCTGTGTTTGTGA+AGG 0.651647 5_4:+42429601 Msa0851850:CDS
TCATTGTGATGTCTCTACCA+AGG 0.666331 5_4:+42428317 None:intergenic
TGTGTTTGTGAAGGTCAGCA+TGG 0.667221 5_4:+42429610 Msa0851850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTACTTTTTTATAAAATAA+TGG + chr5_4:42428878-42428897 Msa0851850:intron 10.0%
!!! TTTTTATCAAAAATAGAAAT+TGG - chr5_4:42431147-42431166 None:intergenic 10.0%
!!! TCTTTAAAAGATTGAATTTT+TGG - chr5_4:42428481-42428500 None:intergenic 15.0%
!!! TTTAAGATTCAAATTACTTT+TGG - chr5_4:42428509-42428528 None:intergenic 15.0%
!! AAATTGTTAATTCAATCAAT+AGG + chr5_4:42428735-42428754 Msa0851850:intron 15.0%
!! AATTGTTAATTCAATCAATA+GGG + chr5_4:42428736-42428755 Msa0851850:intron 15.0%
!!! AAAAACTGTTTAACTTAATA+TGG + chr5_4:42431494-42431513 Msa0851850:three_prime_UTR 15.0%
!!! TAAAAACAATGTTACTTTGT+TGG + chr5_4:42428363-42428382 Msa0851850:CDS 20.0%
!! AAATCACAAAAATTGAAATG+CGG - chr5_4:42429301-42429320 None:intergenic 20.0%
!! AGAATATGTTATTACTTATG+AGG + chr5_4:42429907-42429926 Msa0851850:CDS 20.0%
!!! CACATTTTATTATCTTATCA+CGG + chr5_4:42430187-42430206 Msa0851850:intron 20.0%
!!! TTGTGATTTTAGTTTGAAAT+AGG + chr5_4:42430328-42430347 Msa0851850:intron 20.0%
!! TTCTATTAATATACCTTACA+TGG - chr5_4:42430358-42430377 None:intergenic 20.0%
!! ATGTAAGGTATATTAATAGA+AGG + chr5_4:42430357-42430376 Msa0851850:intron 20.0%
!! AATAAAAGCTTGAATGATAA+TGG + chr5_4:42430424-42430443 Msa0851850:intron 20.0%
!! AATGTGACTTCAAATTAAAA+TGG + chr5_4:42430505-42430524 Msa0851850:intron 20.0%
!! ACTAAATGAATATGTTACAT+GGG + chr5_4:42430689-42430708 Msa0851850:intron 20.0%
!!! TTTGATACGATTTTATTGAA+AGG + chr5_4:42430792-42430811 Msa0851850:intron 20.0%
!!! TTGATACGATTTTATTGAAA+GGG + chr5_4:42430793-42430812 Msa0851850:intron 20.0%
!!! AAAGTAAATTAAGTTGAAGT+AGG - chr5_4:42431123-42431142 None:intergenic 20.0%
!! TATTGCATTATATATGTTTG+TGG + chr5_4:42431450-42431469 Msa0851850:three_prime_UTR 20.0%
!! AAAGATGATCATCTTTTTGA+GGG - chr5_4:42428649-42428668 None:intergenic 25.0%
!! AAAAGATGATCATCTTTTTG+AGG - chr5_4:42428648-42428667 None:intergenic 25.0%
!!! TACTGCAAGGTTTTAAATTT+AGG + chr5_4:42429152-42429171 Msa0851850:intron 25.0%
! CTTAACAATGAAAATGAACT+CGG + chr5_4:42429450-42429469 Msa0851850:intron 25.0%
!! TTTTTCCTAAACGATCTTAT+TGG - chr5_4:42429527-42429546 None:intergenic 25.0%
!!! AAGTCTACTTTTCTCAAATA+CGG - chr5_4:42429644-42429663 None:intergenic 25.0%
! ATTACTTATGAGGATAAAGA+TGG + chr5_4:42429917-42429936 Msa0851850:CDS 25.0%
!!! TGATTTTAGTTTGAAATAGG+TGG + chr5_4:42430331-42430350 Msa0851850:intron 25.0%
!! TTTGAATTGGCTTAAATTGT+TGG - chr5_4:42430532-42430551 None:intergenic 25.0%
! CACTAAATGAATATGTTACA+TGG + chr5_4:42430688-42430707 Msa0851850:intron 25.0%
! CTAAATGAATATGTTACATG+GGG + chr5_4:42430690-42430709 Msa0851850:intron 25.0%
! AAATCAAAGTGAAGTAAACA+AGG - chr5_4:42430870-42430889 None:intergenic 25.0%
! GATTGATTGTGTTAAATGAA+TGG - chr5_4:42431020-42431039 None:intergenic 25.0%
!! CACATAATTTGTACTTGAAT+TGG - chr5_4:42431202-42431221 None:intergenic 25.0%
! TTTCACACTAAAATGTCTTA+GGG - chr5_4:42431382-42431401 None:intergenic 25.0%
! GAAAAAAGTGTGTGTTTGAA+TGG + chr5_4:42428385-42428404 Msa0851850:CDS 30.0%
TAAAGCTACTGAACTTAGAT+TGG + chr5_4:42428525-42428544 Msa0851850:intron 30.0%
AAAGCTACTGAACTTAGATT+GGG + chr5_4:42428526-42428545 Msa0851850:intron 30.0%
AAATCTGATGAATCTCTTTC+AGG - chr5_4:42428571-42428590 None:intergenic 30.0%
!! CTGTTTTAGGTAACAAAAGA+GGG + chr5_4:42428680-42428699 Msa0851850:intron 30.0%
! TACCTCTGAAAAAACATTCA+TGG - chr5_4:42428716-42428735 None:intergenic 30.0%
ATTCAATCAATAGGGTATGA+TGG + chr5_4:42428744-42428763 Msa0851850:intron 30.0%
!! CTTAACTGTTGCTATTTCAT+CGG - chr5_4:42429007-42429026 None:intergenic 30.0%
GAAATAGCAACAGTTAAGAT+TGG + chr5_4:42429009-42429028 Msa0851850:CDS 30.0%
!!! CTTTTTTTAGAAGCTTGGTT+TGG + chr5_4:42429427-42429446 Msa0851850:intron 30.0%
AATAGTCTTTCAACGATTTG+AGG + chr5_4:42429768-42429787 Msa0851850:intron 30.0%
GTCTTCAATAATGCCAAAAA+TGG - chr5_4:42430393-42430412 None:intergenic 30.0%
ACCATTATTTCGTCTAACTA+CGG - chr5_4:42430577-42430596 None:intergenic 30.0%
ATGTTTGGAAATTGGAATCA+TGG - chr5_4:42430659-42430678 None:intergenic 30.0%
TGAAACGCAAAATTGAAAAC+AGG - chr5_4:42430733-42430752 None:intergenic 30.0%
AAATCGTATCAAATTCGCTA+TGG - chr5_4:42430785-42430804 None:intergenic 30.0%
ATGAGGAAAATTCTTAGAGA+GGG + chr5_4:42430816-42430835 Msa0851850:intron 30.0%
AGTTGAGATATATTAGGTGT+TGG - chr5_4:42430918-42430937 None:intergenic 30.0%
GCAAAGAGTTGAGATATATT+AGG - chr5_4:42430924-42430943 None:intergenic 30.0%
AATATATCTCAACTCTTTGC+AGG + chr5_4:42430924-42430943 Msa0851850:intron 30.0%
CAAGTACAAATTATGTGTTG+TGG + chr5_4:42431205-42431224 Msa0851850:intron 30.0%
!!! TTACTTTTTTCAACTGCTCT+GGG - chr5_4:42431245-42431264 None:intergenic 30.0%
!!! TTTACTTTTTTCAACTGCTC+TGG - chr5_4:42431246-42431265 None:intergenic 30.0%
CAGTTGAAAAAAGTAAAAGC+AGG + chr5_4:42431249-42431268 Msa0851850:CDS 30.0%
GAACTAAGCAGTATCAATAA+TGG + chr5_4:42431271-42431290 Msa0851850:CDS 30.0%
TCTATCTATCTAACTGTCTA+TGG + chr5_4:42431304-42431323 Msa0851850:three_prime_UTR 30.0%
CTTTCACACTAAAATGTCTT+AGG - chr5_4:42431383-42431402 None:intergenic 30.0%
! TCTTATATGTCTTGTTGTGA+AGG + chr5_4:42431405-42431424 Msa0851850:three_prime_UTR 30.0%
ACCAAAAGAGTTCAACTACA+TGG + chr5_4:42428414-42428433 Msa0851850:CDS 35.0%
CCAAAAGAGTTCAACTACAT+GGG + chr5_4:42428415-42428434 Msa0851850:CDS 35.0%
ATCCTCTAATTGTTCATCAG+TGG + chr5_4:42428444-42428463 Msa0851850:CDS 35.0%
ATCCACTGATGAACAATTAG+AGG - chr5_4:42428449-42428468 None:intergenic 35.0%
! CTTTTGTTACCTAAAACAGC+AGG - chr5_4:42428679-42428698 None:intergenic 35.0%
!! GCTGTTTTAGGTAACAAAAG+AGG + chr5_4:42428679-42428698 Msa0851850:intron 35.0%
!!! TGCCATGAATGTTTTTTCAG+AGG + chr5_4:42428711-42428730 Msa0851850:intron 35.0%
!!! GGTATGATGGTTTTAAACTG+CGG + chr5_4:42428757-42428776 Msa0851850:intron 35.0%
! TACAGCTCACTATTAAGTTG+CGG + chr5_4:42428827-42428846 Msa0851850:intron 35.0%
AAAATGCTTGAGAATGTTGC+CGG + chr5_4:42428967-42428986 Msa0851850:CDS 35.0%
GAAAGCAAACCAAGTCTTAA+TGG + chr5_4:42429057-42429076 Msa0851850:CDS 35.0%
! CTTAATGGTTCTGCAACTAA+TGG + chr5_4:42429072-42429091 Msa0851850:CDS 35.0%
TTTGTAAGTAACTGCGATTC+AGG - chr5_4:42429224-42429243 None:intergenic 35.0%
ATCGCAGTTACTTACAAATG+CGG + chr5_4:42429226-42429245 Msa0851850:intron 35.0%
CTTGAATCACGATTGTATCA+CGG + chr5_4:42429353-42429372 Msa0851850:intron 35.0%
!!! GCGAACTTTTTTTAGAAGCT+TGG + chr5_4:42429422-42429441 Msa0851850:intron 35.0%
GATGATTGATGAATCTTGTG+TGG + chr5_4:42429476-42429495 Msa0851850:intron 35.0%
TTCCTAAACGATCTTATTGG+AGG - chr5_4:42429524-42429543 None:intergenic 35.0%
!! TTCATTGTTCTTTGAAGCAG+TGG - chr5_4:42429558-42429577 None:intergenic 35.0%
TGCTTCAAAGAACAATGAAG+AGG + chr5_4:42429559-42429578 Msa0851850:CDS 35.0%
AAGAACAATGAAGAGGTTGA+TGG + chr5_4:42429566-42429585 Msa0851850:CDS 35.0%
!! TGAAGAGGTTGATGGAAAAT+TGG + chr5_4:42429574-42429593 Msa0851850:CDS 35.0%
!! GAAGAGGTTGATGGAAAATT+GGG + chr5_4:42429575-42429594 Msa0851850:CDS 35.0%
!! TTTGAGGCAATTTTTGTGTC+TGG + chr5_4:42429784-42429803 Msa0851850:intron 35.0%
GCTTATGTTGATGTGATTTC+AGG + chr5_4:42429818-42429837 Msa0851850:intron 35.0%
ATGAGGATAAAGATGGTGAT+TGG + chr5_4:42429924-42429943 Msa0851850:CDS 35.0%
AGTACATAAACTTACTCCCA+GGG - chr5_4:42429968-42429987 None:intergenic 35.0%
AAGTACATAAACTTACTCCC+AGG - chr5_4:42429969-42429988 None:intergenic 35.0%
TGGGAGTAAGTTTATGTACT+TGG + chr5_4:42429968-42429987 Msa0851850:intron 35.0%
!!! AGGTAAGAAACTGCCATTTT+TGG + chr5_4:42430377-42430396 Msa0851850:intron 35.0%
GCAGTACAAATAGTACAGTA+TGG - chr5_4:42430457-42430476 None:intergenic 35.0%
!!! ACAAGCGCTAAGTTTTGAAT+TGG - chr5_4:42430545-42430564 None:intergenic 35.0%
ATGACTGCATGTTTGGAAAT+TGG - chr5_4:42430667-42430686 None:intergenic 35.0%
TTAGTGTATGACTGCATGTT+TGG - chr5_4:42430674-42430693 None:intergenic 35.0%
! CGATTTTATTGAAAGGGATG+AGG + chr5_4:42430799-42430818 Msa0851850:intron 35.0%
GATGAGGAAAATTCTTAGAG+AGG + chr5_4:42430815-42430834 Msa0851850:intron 35.0%
GGATGTTTATTGATACATGC+AGG + chr5_4:42430945-42430964 Msa0851850:intron 35.0%
TGTTTATTGATACATGCAGG+AGG + chr5_4:42430948-42430967 Msa0851850:intron 35.0%
GGAATACTAACCTAAACCAA+TGG - chr5_4:42430999-42431018 None:intergenic 35.0%
!!! TACTTTTTTCAACTGCTCTG+GGG - chr5_4:42431244-42431263 None:intergenic 35.0%
! CCCATGTAGTTGAACTCTTT+TGG - chr5_4:42428418-42428437 None:intergenic 40.0%
!! TCATCTTTTTGAGGGTGCAA+AGG - chr5_4:42428637-42428656 None:intergenic 40.0%
!!! GAATCAAAGCCTGCTGTTTT+AGG + chr5_4:42428667-42428686 Msa0851850:intron 40.0%
TCCCTCTGAATTGATTATGC+AGG + chr5_4:42428924-42428943 Msa0851850:intron 40.0%
CCCTGCATAATCAATTCAGA+GGG - chr5_4:42428928-42428947 None:intergenic 40.0%
CCCTCTGAATTGATTATGCA+GGG + chr5_4:42428925-42428944 Msa0851850:intron 40.0%
CCTCTGAATTGATTATGCAG+GGG + chr5_4:42428926-42428945 Msa0851850:intron 40.0%
!!! TTCTCAAGCATTTTGGAGCT+AGG - chr5_4:42428961-42428980 None:intergenic 40.0%
! GGCAACATTCTCAAGCATTT+TGG - chr5_4:42428968-42428987 None:intergenic 40.0%
AAATGCTTGAGAATGTTGCC+GGG + chr5_4:42428968-42428987 Msa0851850:CDS 40.0%
!! CAGTTAAGATTGGTCTTGAG+AGG + chr5_4:42429019-42429038 Msa0851850:CDS 40.0%
TTGCTTTCACCAACACCATT+AGG - chr5_4:42429045-42429064 None:intergenic 40.0%
GTTGCAGAACCATTAAGACT+TGG - chr5_4:42429069-42429088 None:intergenic 40.0%
TGGCATTAGAGTTTACTGCA+AGG + chr5_4:42429139-42429158 Msa0851850:intron 40.0%
! GACATCGTGGTTTTTGATGT+TGG - chr5_4:42429384-42429403 None:intergenic 40.0%
ATTGATGAATCTTGTGTGGC+AGG + chr5_4:42429480-42429499 Msa0851850:intron 40.0%
TTGATGAATCTTGTGTGGCA+GGG + chr5_4:42429481-42429500 Msa0851850:intron 40.0%
! GTTGATGGAAAATTGGGATC+AGG + chr5_4:42429581-42429600 Msa0851850:CDS 40.0%
! ATGTTCAGCTGTTTCACCAT+AGG + chr5_4:42429710-42429729 Msa0851850:CDS 40.0%
AACCTATTCCTACCTACCTA+TGG - chr5_4:42429729-42429748 None:intergenic 40.0%
TCAGGTCAATGTGAATCTCA+TGG + chr5_4:42429836-42429855 Msa0851850:intron 40.0%
CGATTAATGAAGCACAGACA+CGG + chr5_4:42430003-42430022 Msa0851850:intron 40.0%
TTGAATGTAACCACGTGTGT+TGG + chr5_4:42430077-42430096 Msa0851850:intron 40.0%
TGAAATAGGTGGTCCATGTA+AGG + chr5_4:42430342-42430361 Msa0851850:intron 40.0%
CTGTACTATTTGTACTGCGT+TGG + chr5_4:42430459-42430478 Msa0851850:intron 40.0%
GCCGTAGTTAGACGAAATAA+TGG + chr5_4:42430573-42430592 Msa0851850:intron 40.0%
GAATATGTTACATGGGGCTT+AGG + chr5_4:42430696-42430715 Msa0851850:intron 40.0%
!! GGTGTTGGAATTAGTTTGCA+GGG - chr5_4:42430903-42430922 None:intergenic 40.0%
!! AGGTGTTGGAATTAGTTTGC+AGG - chr5_4:42430904-42430923 None:intergenic 40.0%
!!! ACTTTTTTCAACTGCTCTGG+GGG - chr5_4:42431243-42431262 None:intergenic 40.0%
TCTCTACCAAGGCTAGGAAT+AGG + chr5_4:42428328-42428347 Msa0851850:CDS 45.0%
TCATCACCTATTCCTAGCCT+TGG - chr5_4:42428337-42428356 None:intergenic 45.0%
GAACTTAGATTGGGACTTCC+AGG + chr5_4:42428535-42428554 Msa0851850:CDS 45.0%
CTTTCAGGAGAAAGTGATCC+TGG - chr5_4:42428556-42428575 None:intergenic 45.0%
! TGAGGGTGCAAAGGAAAAAG+AGG - chr5_4:42428628-42428647 None:intergenic 45.0%
CCCCTGCATAATCAATTCAG+AGG - chr5_4:42428929-42428948 None:intergenic 45.0%
!! ATTGGTCTTGAGAGGCCTAA+TGG + chr5_4:42429027-42429046 Msa0851850:CDS 45.0%
CTCCTGCTAGCAAGTAAGTA+GGG + chr5_4:42429106-42429125 Msa0851850:intron 45.0%
GTAAGTAGGGTGGTGTGAAT+TGG + chr5_4:42429119-42429138 Msa0851850:intron 45.0%
CTCAGATTGCGGTCAAATAG+TGG + chr5_4:42429275-42429294 Msa0851850:intron 45.0%
CATCAAAAACCACGATGTCG+CGG + chr5_4:42429385-42429404 Msa0851850:intron 45.0%
AAAGTTCGCAACCGAAGTCT+GGG - chr5_4:42429411-42429430 None:intergenic 45.0%
AAAAGTTCGCAACCGAAGTC+TGG - chr5_4:42429412-42429431 None:intergenic 45.0%
GGCCTCCAATAAGATCGTTT+AGG + chr5_4:42429519-42429538 Msa0851850:CDS 45.0%
GATGGAAAATTGGGATCAGG+AGG + chr5_4:42429584-42429603 Msa0851850:CDS 45.0%
TGTGTTTGTGAAGGTCAGCA+TGG + chr5_4:42429610-42429629 Msa0851850:CDS 45.0%
TTTGTGAAGGTCAGCATGGA+TGG + chr5_4:42429614-42429633 Msa0851850:CDS 45.0%
! TCAGCTGTTTCACCATAGGT+AGG + chr5_4:42429714-42429733 Msa0851850:intron 45.0%
CTGTTTCACCATAGGTAGGT+AGG + chr5_4:42429718-42429737 Msa0851850:intron 45.0%
CACCATAGGTAGGTAGGAAT+AGG + chr5_4:42429724-42429743 Msa0851850:intron 45.0%
TGCTGAATGAAACCAAGCTG+AGG + chr5_4:42429867-42429886 Msa0851850:CDS 45.0%
GCTGAATGAAACCAAGCTGA+GGG + chr5_4:42429868-42429887 Msa0851850:CDS 45.0%
AGATGGTGATTGGATGCTTG+TGG + chr5_4:42429934-42429953 Msa0851850:CDS 45.0%
GATGGTGATTGGATGCTTGT+GGG + chr5_4:42429935-42429954 Msa0851850:CDS 45.0%
ACTACCAATGTCGACGATGT+CGG - chr5_4:42430037-42430056 None:intergenic 45.0%
! ATGAAGAGCTCTGATGCCAT+TGG + chr5_4:42430980-42430999 Msa0851850:intron 45.0%
!! AGCTCTGATGCCATTGGTTT+AGG + chr5_4:42430986-42431005 Msa0851850:intron 45.0%
! ATCGGCTTTCACTTTCTGCC+CGG - chr5_4:42428989-42429008 None:intergenic 50.0%
CTTGAGAGGCCTAATGGTGT+TGG + chr5_4:42429033-42429052 Msa0851850:CDS 50.0%
GCTCCTGCTAGCAAGTAAGT+AGG + chr5_4:42429105-42429124 Msa0851850:intron 50.0%
! CACCCTACTTACTTGCTAGC+AGG - chr5_4:42429111-42429130 None:intergenic 50.0%
CTGCTAGCAAGTAAGTAGGG+TGG + chr5_4:42429109-42429128 Msa0851850:intron 50.0%
CAATCTGAGCTGCGACATCA+TGG - chr5_4:42429264-42429283 None:intergenic 50.0%
TGATGTCGCAGCTCAGATTG+CGG + chr5_4:42429264-42429283 Msa0851850:intron 50.0%
!! AGGAGGTGCTGTGTTTGTGA+AGG + chr5_4:42429601-42429620 Msa0851850:CDS 50.0%
ATGAAGCAGATCCCTCAGCT+TGG - chr5_4:42429882-42429901 None:intergenic 50.0%
AAGCTGAGGGATCTGCTTCA+TGG + chr5_4:42429881-42429900 Msa0851850:CDS 50.0%
!! CACGTGTGTTGGTGTTGTGT+CGG + chr5_4:42430088-42430107 Msa0851850:intron 50.0%
AATCTTGTGTGGCAGGGCAC+AGG + chr5_4:42429487-42429506 Msa0851850:intron 55.0%
TGCTTGTGGGTGATGTTCCC+TGG + chr5_4:42429948-42429967 Msa0851850:intron 55.0%
GCTTGTGGGTGATGTTCCCT+GGG + chr5_4:42429949-42429968 Msa0851850:intron 55.0%
GACACCGACATCGTCGACAT+TGG + chr5_4:42430030-42430049 Msa0851850:intron 55.0%
CGACACAACACCAACACACG+TGG - chr5_4:42430090-42430109 None:intergenic 55.0%
TGTGGCAGGGCACAGGTTGT+TGG + chr5_4:42429494-42429513 Msa0851850:intron 60.0%
GCAGGGCACAGGTTGTTGGT+TGG + chr5_4:42429498-42429517 Msa0851850:intron 60.0%
!! CTGCTCTGGGGGCTGCAAAA+TGG - chr5_4:42431232-42431251 None:intergenic 60.0%
AAGTCTGGGCCGCGACATCG+TGG - chr5_4:42429397-42429416 None:intergenic 65.0%
CGATGTCGCGGCCCAGACTT+CGG + chr5_4:42429397-42429416 Msa0851850:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 42428325 42431564 42428325 ID=Msa0851850;Name=Msa0851850
chr5_4 mRNA 42428325 42431564 42428325 ID=Msa0851850-mRNA-1;Parent=Msa0851850;Name=Msa0851850-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.4|0.5|1|0.6|0.33|6|274|304
chr5_4 exon 42428325 42428511 42428325 ID=Msa0851850-mRNA-1:exon:13458;Parent=Msa0851850-mRNA-1
chr5_4 exon 42428530 42428681 42428530 ID=Msa0851850-mRNA-1:exon:13459;Parent=Msa0851850-mRNA-1
chr5_4 exon 42428946 42429118 42428946 ID=Msa0851850-mRNA-1:exon:13460;Parent=Msa0851850-mRNA-1
chr5_4 exon 42429502 42429731 42429502 ID=Msa0851850-mRNA-1:exon:13461;Parent=Msa0851850-mRNA-1
chr5_4 exon 42429840 42429961 42429840 ID=Msa0851850-mRNA-1:exon:13462;Parent=Msa0851850-mRNA-1
chr5_4 exon 42431240 42431564 42431240 ID=Msa0851850-mRNA-1:exon:13463;Parent=Msa0851850-mRNA-1
chr5_4 CDS 42428325 42428511 42428325 ID=Msa0851850-mRNA-1:cds;Parent=Msa0851850-mRNA-1
chr5_4 CDS 42428530 42428681 42428530 ID=Msa0851850-mRNA-1:cds;Parent=Msa0851850-mRNA-1
chr5_4 CDS 42428946 42429118 42428946 ID=Msa0851850-mRNA-1:cds;Parent=Msa0851850-mRNA-1
chr5_4 CDS 42429502 42429731 42429502 ID=Msa0851850-mRNA-1:cds;Parent=Msa0851850-mRNA-1
chr5_4 CDS 42429840 42429961 42429840 ID=Msa0851850-mRNA-1:cds;Parent=Msa0851850-mRNA-1
chr5_4 CDS 42431240 42431290 42431240 ID=Msa0851850-mRNA-1:cds;Parent=Msa0851850-mRNA-1
chr5_4 three_prime_UTR 42431291 42431564 42431291 ID=Msa0851850-mRNA-1:three_prime_utr;Parent=Msa0851850-mRNA-1
Gene Sequence

>Msa0851850

ATGTCTCTACCAAGGCTAGGAATAGGTGATGAAGAAAGTAAAAACAATGTTACTTTGTTGGAAAAAAGTGTGTGTTTGAATGGTTCAAAACCAAAAGAGTTCAACTACATGGGATTATCATCCTCTAATTGTTCATCAGTGGATAGTTCAGTTCCAAAAATTCAATCTTTTAAAGATGAGACCAAAACTACTGAACTTAGATTGGGACTTCCAGGATCACTTTCTCCTGAAAGAGATTCATCAGATTTTTGTTTGAGAAGTTCAAAGCAGTTTGATGAAAAGCCTCTTTTTCCTTTGCACCCTCAAAAAGATGATCATCTTTTTGAATCAAAGCCTGCTGGGAAATTGAAGCCTAGCTCCAAAATGCTTGAGAATGTTGCCGGGCAGAAAGTGAAAGCCGATGAAATAGCAACAGTTAAGATTGGTCTTGAGAGGCCTAATGGTGTTGGTGAAAGCAAACCAAGTCTTAATGGTTCTGCAACTAATGGAAATAGCACTGCTCCTGCTAGCAAGGCACAGGTTGTTGGTTGGCCTCCAATAAGATCGTTTAGGAAAAATTCATTGACCACTGCTTCAAAGAACAATGAAGAGGTTGATGGAAAATTGGGATCAGGAGGTGCTGTGTTTGTGAAGGTCAGCATGGATGGTGCTCCGTATTTGAGAAAAGTAGACTTGAAGAATTACACTGCATATTCACAACTATCTTCTTCTCTTGAGAAGATGTTCAGCTGTTTCACCATAGGTCAATGTGAATCTCATGGAAATCAGATGCTGAATGAAACCAAGCTGAGGGATCTGCTTCATGGTTCAGAATATGTTATTACTTATGAGGATAAAGATGGTGATTGGATGCTTGTGGGTGATCCCCCAGAGCAGTTGAAAAAAGTAAAAGCAGGAACTAAGCAGTATCAATAA

Protein sequence

>Msa0851850

MSLPRLGIGDEESKNNVTLLEKSVCLNGSKPKEFNYMGLSSSNCSSVDSSVPKIQSFKDETKTTELRLGLPGSLSPERDSSDFCLRSSKQFDEKPLFPLHPQKDDHLFESKPAGKLKPSSKMLENVAGQKVKADEIATVKIGLERPNGVGESKPSLNGSATNGNSTAPASKAQVVGWPPIRSFRKNSLTTASKNNEEVDGKLGSGGAVFVKVSMDGAPYLRKVDLKNYTAYSQLSSSLEKMFSCFTIGQCESHGNQMLNETKLRDLLHGSEYVITYEDKDGDWMLVGDPPEQLKKVKAGTKQYQ*