AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0608720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608720 MtrunA17_Chr4g0041041 97.838 370 8 0 1 370 17 386 0.0 754
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 110 sgRNAs with CRISPR-Local

Find 501 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGTTTGTCTTACGTTAA+AGG 0.153196 4_2:-55932370 Msa0608720:three_prime_UTR
GGAAATGACAAAAGAGATTT+TGG 0.179922 4_2:-55940743 Msa0608720:CDS
TTTGGAGTCAGAAGTTTATA+AGG 0.209201 4_2:-55940725 Msa0608720:CDS
CTGAGCCACAGCTAGAAAAT+AGG 0.255514 4_2:+55933966 None:intergenic
GTGCTAGACAAGTTCTTATA+AGG 0.269712 4_2:-55940896 Msa0608720:intron
ACTTGTTAGGAAGCTTTATT+TGG 0.269913 4_2:-55932553 Msa0608720:three_prime_UTR
TTGTTCTTTGGTTACTTGAA+TGG 0.305201 4_2:-55932518 Msa0608720:three_prime_UTR
ATAATCAAGAATAGGAAATT+AGG 0.319713 4_2:-55932492 Msa0608720:three_prime_UTR
CTGTGAACATTATCCAATCT+TGG 0.335914 4_2:-55932319 Msa0608720:three_prime_UTR
CGCAGATAATGCGTGACAAT+TGG 0.343858 4_2:-55934239 Msa0608720:CDS
GGAGTCTCTCCAGTCCATTT+TGG 0.347401 4_2:+55940981 None:intergenic
TTCCTTTACTACATTCACTA+TGG 0.352084 4_2:+55933398 None:intergenic
CCTTCATCATATGCATGAAA+TGG 0.356221 4_2:+55940555 None:intergenic
AACCAGCTTCCTTCAGTGTT+TGG 0.362900 4_2:+55932716 None:intergenic
CTTGTATTGACAACCAAGAT+TGG 0.378228 4_2:+55932306 None:intergenic
CGAGTACTACTTGACTGATA+TGG 0.380852 4_2:-55932740 Msa0608720:CDS
ACATTCACTATGGCTCTTGC+AGG 0.387189 4_2:+55933408 None:intergenic
GTTTGCTATGACAGATAATT+CGG 0.399971 4_2:-55933346 Msa0608720:intron
ACCTGTAGGACCTTTGACTT+TGG 0.401436 4_2:+55933240 None:intergenic
TCTAGCTGTGGCTCAGCATA+AGG 0.402145 4_2:-55933959 Msa0608720:CDS
GAAAGCTGGTAAGACCAAAA+TGG 0.406231 4_2:-55940995 Msa0608720:CDS
TGCTCTTCATCAATGTAAAC+AGG 0.408653 4_2:+55932779 None:intergenic
ACAAGATCAAATGATTTAGA+AGG 0.410624 4_2:+55933868 None:intergenic
TAAAATGGATACATGCAAAT+GGG 0.418740 4_2:-55933906 Msa0608720:CDS
CTTCATAGCTACTAGCTTGA+AGG 0.422456 4_2:+55941021 None:intergenic
TAGAATGGATGAGCAGCTTA+AGG 0.425310 4_2:-55932408 Msa0608720:three_prime_UTR
GTCAGAAGTTTATAAGGAGT+TGG 0.427742 4_2:-55940719 Msa0608720:CDS
TCTTGTGTCTATTTCTTATG+TGG 0.429692 4_2:-55933851 Msa0608720:intron
CCCTAGGCACGTGACTTTAA+CGG 0.438446 4_2:-55932665 Msa0608720:CDS
TAGTGGTGGTGATGCCATGC+GGG 0.449233 4_2:+55941108 None:intergenic
ATAAAATGGATACATGCAAA+TGG 0.451046 4_2:-55933907 Msa0608720:CDS
CCATTTCATGCATATGATGA+AGG 0.452780 4_2:-55940555 Msa0608720:CDS
ATTAGGAATGACGTTTAAGA+AGG 0.453555 4_2:-55932475 Msa0608720:three_prime_UTR
TGTGCCTCAATGAAACATCT+TGG 0.462950 4_2:-55932638 Msa0608720:exon
CAAGTAGTACTCGTCAAGAA+AGG 0.463853 4_2:+55932750 None:intergenic
TGTTGGTGCCTTTGTGGTAG+TGG 0.466508 4_2:+55941091 None:intergenic
AATGGTGTATAATCAAGAAT+AGG 0.474995 4_2:-55932500 Msa0608720:three_prime_UTR
AGGAAGCATTCCGTCTCCTT+CGG 0.475832 4_2:-55933380 Msa0608720:CDS
GCATTCCGTCTCCTTCGGCC+TGG 0.478773 4_2:-55933375 Msa0608720:CDS
TGTACTTTCGAATGTTAGAA+TGG 0.481450 4_2:-55932423 Msa0608720:three_prime_UTR
TGAGCCACAGCTAGAAAATA+GGG 0.482232 4_2:+55933967 None:intergenic
GTGCCTCAATGAAACATCTT+GGG 0.496553 4_2:-55932637 Msa0608720:exon
CAATCTTGGTTGTCAATACA+AGG 0.498360 4_2:-55932305 None:intergenic
GCCGTTAAAGTCACGTGCCT+AGG 0.504069 4_2:+55932664 None:intergenic
CTAGACATTGGATGTTCTGT+GGG 0.504597 4_2:-55934156 Msa0608720:CDS
CATTCACAAACATCTATGAT+TGG 0.507503 4_2:-55934186 Msa0608720:CDS
GCCAAAGTCAAAGGTCCTAC+AGG 0.510737 4_2:-55933241 Msa0608720:intron
ACGCCGTGTTGGTGCCTTTG+TGG 0.510870 4_2:+55941085 None:intergenic
TTATACTCTATCCTCAAGCT+TGG 0.513522 4_2:-55940918 Msa0608720:CDS
AGAATGGATGAGCAGCTTAA+GGG 0.514731 4_2:-55932407 Msa0608720:three_prime_UTR
AGCCATAGTGAATGTAGTAA+AGG 0.515798 4_2:-55933400 Msa0608720:CDS
GTCATAGCAAACGTGCCTCC+AGG 0.518839 4_2:+55933357 None:intergenic
CTTTAAAGCTATCTACTTCA+CGG 0.520876 4_2:-55932347 Msa0608720:three_prime_UTR
TAGCTATGAAGAAGGAAAGC+TGG 0.521816 4_2:-55941009 Msa0608720:CDS
TTCATCAATGTAAACAGGAC+AGG 0.523632 4_2:+55932784 None:intergenic
TGCCTCCAGGCCGAAGGAGA+CGG 0.527581 4_2:+55933370 None:intergenic
CATTGACTTAGTAGCAGCCT+CGG 0.529201 4_2:+55934305 None:intergenic
CGAGGCTGCTACTAAGTCAA+TGG 0.529702 4_2:-55934304 Msa0608720:CDS
CGCTTCTTCTACTGATGAAG+CGG 0.534196 4_2:+55934263 None:intergenic
TGAAGGGAATCTTACATGGC+TGG 0.540223 4_2:-55940538 Msa0608720:intron
AAGTAGTACTCGTCAAGAAA+GGG 0.541395 4_2:+55932751 None:intergenic
CCGTTAAAGTCACGTGCCTA+GGG 0.548980 4_2:+55932665 None:intergenic
TTCATAGCTACTAGCTTGAA+GGG 0.550261 4_2:+55941022 None:intergenic
AGCTTGAGGATAGAGTATAA+AGG 0.550336 4_2:+55940921 None:intergenic
TAAAGATGAAATTACAATCA+GGG 0.551499 4_2:+55940668 None:intergenic
CTGGTAAGACCAAAATGGAC+TGG 0.551537 4_2:-55940990 Msa0608720:CDS
TCACAATGACATTGGCCGTA+GGG 0.555452 4_2:+55934103 None:intergenic
TCTAGACATTGGATGTTCTG+TGG 0.556538 4_2:-55934157 Msa0608720:CDS
GCTCGAACCATGCGAGAGAG+AGG 0.558206 4_2:+55940960 None:intergenic
TTGAAGGGAGGTTGTTGTGT+CGG 0.560578 4_2:+55941037 None:intergenic
AATCAGGGTATACTAAAGAC+TGG 0.564057 4_2:+55940683 None:intergenic
GACCAAACACTGAAGGAAGC+TGG 0.567832 4_2:-55932718 Msa0608720:CDS
ACATGCAAATGGGGAAGACA+CGG 0.570127 4_2:-55933896 Msa0608720:CDS
CAACATTTGAGTTTAATGAA+AGG 0.570241 4_2:-55932580 Msa0608720:three_prime_UTR
CAAGCTAGTAGCTATGAAGA+AGG 0.571992 4_2:-55941017 Msa0608720:CDS
CCTTCTGCAGCCAAAGTCAA+AGG 0.572810 4_2:-55933250 Msa0608720:intron
CATTTCATGCATATGATGAA+GGG 0.577373 4_2:-55940554 Msa0608720:CDS
TTCCGTCTCCTTCGGCCTGG+AGG 0.580123 4_2:-55933372 Msa0608720:CDS
ATTGGTGACATTCTAGACAT+TGG 0.582465 4_2:-55934168 Msa0608720:CDS
AGAGACTCCTCTCTCTCGCA+TGG 0.582497 4_2:-55940967 Msa0608720:CDS
GTTAAAACTCACAATGACAT+TGG 0.583152 4_2:+55934095 None:intergenic
GAATGGATGAGCAGCTTAAG+GGG 0.587364 4_2:-55932406 Msa0608720:three_prime_UTR
ATGATGAAGGGAATCTTACA+TGG 0.591019 4_2:-55940542 Msa0608720:CDS
ATAGGCAGCAGCAGAAGCCG+AGG 0.591142 4_2:-55934322 Msa0608720:intron
TAAAGTCACGTGCCTAGGGT+TGG 0.598671 4_2:+55932669 None:intergenic
ACCACCACGTGACGCCGTGT+TGG 0.604335 4_2:+55941074 None:intergenic
TCTTGCGGACAAGTTCCCTA+CGG 0.605513 4_2:-55934118 Msa0608720:CDS
TGGTGCCTTTGTGGTAGTGG+TGG 0.612166 4_2:+55941094 None:intergenic
AGTAAGCTCAAGATTTCTTG+CGG 0.617617 4_2:-55934133 Msa0608720:CDS
AAAATGGATACATGCAAATG+GGG 0.624426 4_2:-55933905 Msa0608720:CDS
AATCAATTCTTACCAACCCT+AGG 0.624884 4_2:-55932681 Msa0608720:CDS
AGTGGTGGTGATGCCATGCG+GGG 0.626878 4_2:+55941109 None:intergenic
TCTTCTACTGATGAAGCGGT+AGG 0.627521 4_2:+55934267 None:intergenic
CATGCAAATGGGGAAGACAC+GGG 0.629318 4_2:-55933895 Msa0608720:CDS
TGATATGGACCAAACACTGA+AGG 0.631121 4_2:-55932725 Msa0608720:CDS
GGCACCAACACGGCGTCACG+TGG 0.633755 4_2:-55941078 Msa0608720:CDS
CAAACGTGCCTCCAGGCCGA+AGG 0.635743 4_2:+55933364 None:intergenic
TCACGTGGTGGTTCACGCTG+CGG 0.638308 4_2:-55941063 Msa0608720:CDS
AATCCCAAGATGTTTCATTG+AGG 0.639944 4_2:+55932634 None:intergenic
GCGGGGAGATTAATGATGAG+AGG 0.645229 4_2:+55941126 None:intergenic
CTTGTCTAGCACCAAGCTTG+AGG 0.645836 4_2:+55940907 None:intergenic
GTAGTGGTGGTGATGCCATG+CGG 0.652417 4_2:+55941107 None:intergenic
TCATCATTAATCTCCCCGCA+TGG 0.655400 4_2:-55941122 Msa0608720:CDS
ACCAACACGGCGTCACGTGG+TGG 0.659578 4_2:-55941075 Msa0608720:CDS
CTCACAATGACATTGGCCGT+AGG 0.667491 4_2:+55934102 None:intergenic
CATCACCACCACTACCACAA+AGG 0.675272 4_2:-55941099 Msa0608720:CDS
CTACCACAAAGGCACCAACA+CGG 0.688875 4_2:-55941088 Msa0608720:CDS
GCTCAGCATAAGGAAAAGAG+CGG 0.692800 4_2:-55933949 Msa0608720:CDS
ATAGCTACTAGCTTGAAGGG+AGG 0.713336 4_2:+55941025 None:intergenic
GAAACTGGAAGTGCAAATTG+TGG 0.722800 4_2:+55941210 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAGTTAATTAGTTTAAAAA+TGG + chr4_2:55933582-55933601 None:intergenic 10.0%
!! ATTAAATTAATTAGTTGTTT+AGG + chr4_2:55933611-55933630 None:intergenic 10.0%
!! TTTAATAGAAGAAATTATTA+GGG + chr4_2:55933736-55933755 None:intergenic 10.0%
!! ATCATGATATTAAAATAATT+TGG - chr4_2:55936962-55936981 Msa0608720:intron 10.0%
!! TCATGATATTAAAATAATTT+GGG - chr4_2:55936963-55936982 Msa0608720:intron 10.0%
!! GTTTAATAGAAGAAATTATT+AGG + chr4_2:55933737-55933756 None:intergenic 15.0%
!! AATTTCTTCTATTAAACATT+TGG - chr4_2:55933740-55933759 Msa0608720:intron 15.0%
!! AACTCTTATAATACAAATAT+TGG + chr4_2:55933877-55933896 None:intergenic 15.0%
!! TGAGATAATACAAAATATTA+TGG - chr4_2:55934363-55934382 Msa0608720:intron 15.0%
!!! TTGTGAAATTTTTGTATTTT+AGG - chr4_2:55935252-55935271 Msa0608720:intron 15.0%
!! ATATATGTTATGGAAATTTA+TGG - chr4_2:55936470-55936489 Msa0608720:intron 15.0%
!! ATTACCTATTATGAAATATT+TGG - chr4_2:55936639-55936658 Msa0608720:intron 15.0%
!! AATATGTTAGATTTAACATA+TGG - chr4_2:55936700-55936719 Msa0608720:intron 15.0%
!!! GTGTTATATTTAATTTTATG+TGG - chr4_2:55937187-55937206 Msa0608720:intron 15.0%
!! TAAAGATGAAATTACAATCA+GGG + chr4_2:55932851-55932870 None:intergenic 20.0%
!!! TTTTTCTCAATGTTAATGAA+TGG - chr4_2:55933028-55933047 Msa0608720:intron 20.0%
!!! ACACTCTAAAAGTAATAAAT+TGG + chr4_2:55933362-55933381 None:intergenic 20.0%
!!! CAATGAATTTTGAAAATGAA+AGG + chr4_2:55933455-55933474 None:intergenic 20.0%
!!! CATTTTCAAAATTCATTGTT+TGG - chr4_2:55933457-55933476 Msa0608720:intron 20.0%
!!! ACAATGAATTTTGAAAATGA+AGG + chr4_2:55933456-55933475 None:intergenic 20.0%
!!! CATTTTCAAAATTCATTGTT+TGG - chr4_2:55933457-55933476 Msa0608720:intron 20.0%
!! ATTTGTATTATAAGAGTTGT+AGG - chr4_2:55933879-55933898 Msa0608720:CDS 20.0%
!!! TTTAAATGTCATTTTCGAAA+TGG + chr4_2:55933938-55933957 None:intergenic 20.0%
!! AAAATAACATCTAGATACAT+TGG + chr4_2:55933968-55933987 None:intergenic 20.0%
!!! TGATTTTTAATTTTGTTGGT+TGG + chr4_2:55934413-55934432 None:intergenic 20.0%
!!! GACATGATTTTTAATTTTGT+TGG + chr4_2:55934417-55934436 None:intergenic 20.0%
!! CAAAATTAAAAATCATGTCA+TGG - chr4_2:55934418-55934437 Msa0608720:intron 20.0%
!! TATTCAGTTAAATTGTGTAT+AGG + chr4_2:55934570-55934589 None:intergenic 20.0%
!!! TGATTTTAGTGTTTTAGTAA+AGG + chr4_2:55934731-55934750 None:intergenic 20.0%
!!! TGGATAAAGTATTTTAATGA+GGG + chr4_2:55935414-55935433 None:intergenic 20.0%
!!! TTGGATAAAGTATTTTAATG+AGG + chr4_2:55935415-55935434 None:intergenic 20.0%
!!! TTAAAGTGATTCCATTATTT+TGG + chr4_2:55935612-55935631 None:intergenic 20.0%
!!! TTTGATTTGAAACAATGTTA+TGG + chr4_2:55935825-55935844 None:intergenic 20.0%
!! ATAACATTGTTTCAAATCAA+AGG - chr4_2:55935824-55935843 Msa0608720:intron 20.0%
!! TAACATTGTTTCAAATCAAA+GGG - chr4_2:55935825-55935844 Msa0608720:intron 20.0%
!!! AACAGTATTTTACAGATTTA+TGG + chr4_2:55936009-55936028 None:intergenic 20.0%
!! TAAATCTGTAAAATACTGTT+AGG - chr4_2:55936009-55936028 Msa0608720:intron 20.0%
!!! CATAACTATTAATCTTTTTC+AGG - chr4_2:55936193-55936212 Msa0608720:intron 20.0%
!! CAAGATATACAACAAATATT+TGG - chr4_2:55936246-55936265 Msa0608720:intron 20.0%
!! TATGATTTACTTGTGATTAA+TGG - chr4_2:55936370-55936389 Msa0608720:intron 20.0%
!! CCATAACATATATTCATAAA+TGG + chr4_2:55936463-55936482 None:intergenic 20.0%
!! CCATTTATGAATATATGTTA+TGG - chr4_2:55936460-55936479 Msa0608720:intron 20.0%
!! AACACCAAATATTTCATAAT+AGG + chr4_2:55936646-55936665 None:intergenic 20.0%
!! TAAATTGTCAAAATATCAAG+TGG - chr4_2:55936832-55936851 Msa0608720:intron 20.0%
!! CATGATAATATGAAAAGTAA+TGG - chr4_2:55936925-55936944 Msa0608720:intron 20.0%
!!! CATAGAAAATATTGTGATTT+TGG - chr4_2:55937032-55937051 Msa0608720:intron 20.0%
!! ATTCAATGTATGATATATCT+TGG - chr4_2:55937303-55937322 Msa0608720:intron 20.0%
!! AATACATTGAAGACATTATT+AGG - chr4_2:55937630-55937649 Msa0608720:intron 20.0%
!! ATACATTGAAGACATTATTA+GGG - chr4_2:55937631-55937650 Msa0608720:intron 20.0%
!!! ATTGGTAATCAATTAGATTT+GGG + chr4_2:55937669-55937688 None:intergenic 20.0%
!! AAACTTAACTTACTAAGTAA+TGG - chr4_2:55938125-55938144 Msa0608720:intron 20.0%
!! AATACTAAATCACATAAATC+CGG + chr4_2:55938191-55938210 None:intergenic 20.0%
!!! GTGATTTAGTATTTTGAAAA+TGG - chr4_2:55938198-55938217 Msa0608720:intron 20.0%
!!! ATTTAGTATTTTGAAAATGG+TGG - chr4_2:55938201-55938220 Msa0608720:intron 20.0%
!!! TTTAGTATTTTGAAAATGGT+GGG - chr4_2:55938202-55938221 Msa0608720:intron 20.0%
!!! TTAAAGTGATTCCATTATTT+TGG + chr4_2:55935612-55935631 None:intergenic 20.0%
!!! TTTGATTTGAAACAATGTTA+TGG + chr4_2:55935825-55935844 None:intergenic 20.0%
!! ATAACATTGTTTCAAATCAA+AGG - chr4_2:55935824-55935843 Msa0608720:intron 20.0%
!! TAACATTGTTTCAAATCAAA+GGG - chr4_2:55935825-55935844 Msa0608720:intron 20.0%
!!! AACAGTATTTTACAGATTTA+TGG + chr4_2:55936009-55936028 None:intergenic 20.0%
!! TAAATCTGTAAAATACTGTT+AGG - chr4_2:55936009-55936028 Msa0608720:intron 20.0%
!!! CATAACTATTAATCTTTTTC+AGG - chr4_2:55936193-55936212 Msa0608720:intron 20.0%
!! CAAGATATACAACAAATATT+TGG - chr4_2:55936246-55936265 Msa0608720:intron 20.0%
!!! TTTTTGTTTCTTTTGTTCTT+TGG - chr4_2:55939034-55939053 Msa0608720:intron 20.0%
!!! AGATCTTATGATATTTTCTA+TGG + chr4_2:55939161-55939180 None:intergenic 20.0%
!!! CATTTTATAGGATTTTTTCT+AGG + chr4_2:55939597-55939616 None:intergenic 20.0%
!! CTAGAAAAAATCCTATAAAA+TGG - chr4_2:55939595-55939614 Msa0608720:intron 20.0%
!! TATGTATCAATTAATTCACA+TGG + chr4_2:55940001-55940020 None:intergenic 20.0%
!! GGATATATGATTTAATGTAT+TGG + chr4_2:55940484-55940503 None:intergenic 20.0%
!!! CATAATGAATTGAGATTTTA+TGG - chr4_2:55940598-55940617 Msa0608720:intron 20.0%
!!! TTGTTTCTTTTGAATCTTTT+TGG - chr4_2:55940905-55940924 Msa0608720:CDS 20.0%
!! ATAATCAAGAATAGGAAATT+AGG - chr4_2:55941024-55941043 Msa0608720:CDS 20.0%
! GTAAAGATGAAATTACAATC+AGG + chr4_2:55932852-55932871 None:intergenic 25.0%
! AACAAAACCAAAAATGTGTT+GGG + chr4_2:55933295-55933314 None:intergenic 25.0%
! AAACAAAACCAAAAATGTGT+TGG + chr4_2:55933296-55933315 None:intergenic 25.0%
!!! TATTACTTTTAGAGTGTGTT+TGG - chr4_2:55933365-55933384 Msa0608720:CDS 25.0%
! TAGAGGATTTGAAAATTCAA+AGG - chr4_2:55933389-55933408 Msa0608720:CDS 25.0%
!! CAAAGGAATTTGAAATTCTA+AGG - chr4_2:55933406-55933425 Msa0608720:CDS 25.0%
! TTTAGTAAAGGTTTAGTTGT+TGG + chr4_2:55934719-55934738 None:intergenic 25.0%
! TTCTCTTTAGCAAAATTTGA+AGG + chr4_2:55935291-55935310 None:intergenic 25.0%
!! TTAAATATTTTCCCAAACAG+TGG - chr4_2:55935346-55935365 Msa0608720:intron 25.0%
!!! AATGAGGGAATGTAATTTTT+TGG + chr4_2:55935399-55935418 None:intergenic 25.0%
! TAAAGATTTGTGTTTGTCAA+AGG - chr4_2:55935444-55935463 Msa0608720:intron 25.0%
! TGATTAAACCCAAACATAAA+AGG + chr4_2:55935555-55935574 None:intergenic 25.0%
! ACATTACTATCTGTTTATGT+TGG - chr4_2:55935580-55935599 Msa0608720:intron 25.0%
! TGATTATAACCTTTGACAAA+AGG - chr4_2:55935728-55935747 Msa0608720:intron 25.0%
! GATTATAACCTTTGACAAAA+GGG - chr4_2:55935729-55935748 Msa0608720:intron 25.0%
! ATGATTATAACCTTTGACAA+AGG - chr4_2:55935727-55935746 Msa0608720:intron 25.0%
! TGATTATAACCTTTGACAAA+GGG - chr4_2:55935728-55935747 Msa0608720:intron 25.0%
! AACATTGTTTCAAATCAAAG+GGG - chr4_2:55935826-55935845 Msa0608720:intron 25.0%
! TATAATGCACTATAAATGCT+TGG - chr4_2:55935873-55935892 Msa0608720:intron 25.0%
! TGTTGTATATCTTGATTGTT+GGG + chr4_2:55936240-55936259 None:intergenic 25.0%
! TTGTTGTATATCTTGATTGT+TGG + chr4_2:55936241-55936260 None:intergenic 25.0%
!!! TGTAAGTTGATATATGTTCA+TGG - chr4_2:55937001-55937020 Msa0608720:intron 25.0%
!! CATTGGTAATCAATTAGATT+TGG + chr4_2:55937670-55937689 None:intergenic 25.0%
! CAAATCTAATTGATTACCAA+TGG - chr4_2:55937668-55937687 Msa0608720:intron 25.0%
! ACTCTTAAATTCTCATGAAA+AGG - chr4_2:55937957-55937976 Msa0608720:intron 25.0%
! CTCTTAAATTCTCATGAAAA+GGG - chr4_2:55937958-55937977 Msa0608720:intron 25.0%
! ATAACTTACACATAGAATCT+CGG + chr4_2:55938041-55938060 None:intergenic 25.0%
!!! TTAGTATTTTGAAAATGGTG+GGG - chr4_2:55938203-55938222 Msa0608720:intron 25.0%
! TGATTATAACCTTTGACAAA+AGG - chr4_2:55935728-55935747 Msa0608720:intron 25.0%
! GATTATAACCTTTGACAAAA+GGG - chr4_2:55935729-55935748 Msa0608720:intron 25.0%
! ATGATTATAACCTTTGACAA+AGG - chr4_2:55935727-55935746 Msa0608720:intron 25.0%
! TGATTATAACCTTTGACAAA+GGG - chr4_2:55935728-55935747 Msa0608720:intron 25.0%
! AACATTGTTTCAAATCAAAG+GGG - chr4_2:55935826-55935845 Msa0608720:intron 25.0%
! TATAATGCACTATAAATGCT+TGG - chr4_2:55935873-55935892 Msa0608720:intron 25.0%
! TGTTGTATATCTTGATTGTT+GGG + chr4_2:55936240-55936259 None:intergenic 25.0%
! TTGTTGTATATCTTGATTGT+TGG + chr4_2:55936241-55936260 None:intergenic 25.0%
!! AGATTTTCCAATGTAATATG+TGG - chr4_2:55939010-55939029 Msa0608720:intron 25.0%
! CAAAAAACCACATATTACAT+TGG + chr4_2:55939020-55939039 None:intergenic 25.0%
! TCGTTAAACAAACTATTATG+TGG - chr4_2:55939095-55939114 Msa0608720:intron 25.0%
! TAAACAAACTATTATGTGGA+TGG - chr4_2:55939099-55939118 Msa0608720:intron 25.0%
! GATCTGTATTATATGATGAT+AGG - chr4_2:55939176-55939195 Msa0608720:intron 25.0%
!! TTTGCATGTATCCATTTTAT+AGG + chr4_2:55939609-55939628 None:intergenic 25.0%
! ATAAAATGGATACATGCAAA+TGG - chr4_2:55939609-55939628 Msa0608720:intron 25.0%
! TAAAATGGATACATGCAAAT+GGG - chr4_2:55939610-55939629 Msa0608720:intron 25.0%
! ACAAGATCAAATGATTTAGA+AGG + chr4_2:55939651-55939670 None:intergenic 25.0%
!! AAATATTAGTCTCTAAACAG+TGG + chr4_2:55939765-55939784 None:intergenic 25.0%
!! AAATGTGTATTTTACTTCCT+AGG - chr4_2:55939876-55939895 Msa0608720:intron 25.0%
! ATATGATCAAGAAGAAAAGA+TGG + chr4_2:55940308-55940327 None:intergenic 25.0%
! TTACTGTTAACCACAATATA+GGG + chr4_2:55940370-55940389 None:intergenic 25.0%
! TTTACTGTTAACCACAATAT+AGG + chr4_2:55940371-55940390 None:intergenic 25.0%
! AGTATTAAGAGTTATGTTAC+AGG + chr4_2:55940552-55940571 None:intergenic 25.0%
!! GAAAGATCTTTAATCAGTTT+TGG + chr4_2:55940626-55940645 None:intergenic 25.0%
! AAGATCTTTCATGTAGTTTA+TGG - chr4_2:55940636-55940655 Msa0608720:intron 25.0%
!!! TTGTTTTTTTCATGTCTTGT+AGG - chr4_2:55940701-55940720 Msa0608720:CDS 25.0%
!! CAACATTTGAGTTTAATGAA+AGG - chr4_2:55940936-55940955 Msa0608720:CDS 25.0%
!! AATGAAAGGTTTTACTTGTT+AGG - chr4_2:55940950-55940969 Msa0608720:CDS 25.0%
!!! TTGTTTTTTGCTTTGTTCTT+TGG - chr4_2:55940986-55941005 Msa0608720:CDS 25.0%
! AATGGTGTATAATCAAGAAT+AGG - chr4_2:55941016-55941035 Msa0608720:CDS 25.0%
TAGACAAGTTCTTATAAGGT+TGG - chr4_2:55932624-55932643 Msa0608720:three_prime_UTR 30.0%
TTGCACAACAAGTTTCAATA+TGG - chr4_2:55932681-55932700 Msa0608720:CDS 30.0%
! GGAAATGACAAAAGAGATTT+TGG - chr4_2:55932773-55932792 Msa0608720:CDS 30.0%
! TTTGGAGTCAGAAGTTTATA+AGG - chr4_2:55932791-55932810 Msa0608720:CDS 30.0%
!! CATCTTTACCTTTCACTTTT+TGG - chr4_2:55932863-55932882 Msa0608720:intron 30.0%
AGAAAAGACCAAAAAGTGAA+AGG + chr4_2:55932874-55932893 None:intergenic 30.0%
CATTTCATGCATATGATGAA+GGG - chr4_2:55932962-55932981 Msa0608720:intron 30.0%
TGGTAACTCATTATCAAGAA+AGG + chr4_2:55933069-55933088 None:intergenic 30.0%
AACATATTCAACTACCAAAG+AGG + chr4_2:55933102-55933121 None:intergenic 30.0%
! CACGACATTGGTAATTATTT+AGG - chr4_2:55933156-55933175 Msa0608720:intron 30.0%
! TGTTATTTAACCACATGTGT+CGG - chr4_2:55933196-55933215 Msa0608720:intron 30.0%
ATTAGCAAAATCACGTGAAA+TGG - chr4_2:55933780-55933799 Msa0608720:intron 30.0%
TTATCTTTGGTCTGTACTAT+TGG + chr4_2:55934256-55934275 None:intergenic 30.0%
TACAGACCAAAGATAATTTC+TGG - chr4_2:55934260-55934279 Msa0608720:CDS 30.0%
TTCCAACTATAGCATAAATC+TGG - chr4_2:55934501-55934520 Msa0608720:intron 30.0%
TGATTAGATTAGTGAAGAAG+AGG + chr4_2:55934691-55934710 None:intergenic 30.0%
! TAATTTTCATGTTGTTCCGT+TGG + chr4_2:55934771-55934790 None:intergenic 30.0%
! TAATTTTCCAGTTCGATTCA+AGG + chr4_2:55934815-55934834 None:intergenic 30.0%
! CAAATCTTTAAGAGTGTGTT+TGG + chr4_2:55935434-55935453 None:intergenic 30.0%
ATAGTTGTAAAAATGTGCCT+TGG - chr4_2:55935476-55935495 Msa0608720:intron 30.0%
GTTATCATTCATATCTTGGA+TGG + chr4_2:55935505-55935524 None:intergenic 30.0%
GTCTGTTATCATTCATATCT+TGG + chr4_2:55935509-55935528 None:intergenic 30.0%
!! GTTGGTGATTTCCAAAATAA+TGG - chr4_2:55935598-55935617 Msa0608720:intron 30.0%
TCAAAAGTTGTAACTCTTCA+TGG - chr4_2:55935633-55935652 Msa0608720:intron 30.0%
CAAAAGTTGTAACTCTTCAT+GGG - chr4_2:55935634-55935653 Msa0608720:intron 30.0%
TGGGAATCATTCATATACAT+TGG - chr4_2:55935653-55935672 Msa0608720:intron 30.0%
ATACACTTGAATCAATGCAA+AGG + chr4_2:55935766-55935785 None:intergenic 30.0%
ATTAAACATCCCTTTGTCAA+AGG + chr4_2:55935799-55935818 None:intergenic 30.0%
ACTATAAATGCTTGGCATTT+GGG - chr4_2:55935881-55935900 Msa0608720:intron 30.0%
! GATTTAGAGTAAGAGAATGA+TGG + chr4_2:55935948-55935967 None:intergenic 30.0%
ACTGTATATTGGATGCAATA+AGG + chr4_2:55936108-55936127 None:intergenic 30.0%
TGCATCCAATATACAGTTAT+TGG - chr4_2:55936111-55936130 Msa0608720:intron 30.0%
ATCCAATATACAGTTATTGG+TGG - chr4_2:55936114-55936133 Msa0608720:intron 30.0%
TCCAATATACAGTTATTGGT+GGG - chr4_2:55936115-55936134 Msa0608720:intron 30.0%
AAATCGAACCTAAAGATTGT+TGG + chr4_2:55936351-55936370 None:intergenic 30.0%
! TGATTAATGGCTGCAATTTT+TGG - chr4_2:55936383-55936402 Msa0608720:intron 30.0%
! GATTAATGGCTGCAATTTTT+GGG - chr4_2:55936384-55936403 Msa0608720:intron 30.0%
TACATATTCATCCATGACTA+CGG - chr4_2:55936420-55936439 Msa0608720:intron 30.0%
TAATCCCATCTTATGAAGTT+TGG - chr4_2:55937229-55937248 Msa0608720:intron 30.0%
ATAGCCAAACTTCATAAGAT+GGG + chr4_2:55937236-55937255 None:intergenic 30.0%
AATTCTCATAGCTATGTCTA+TGG + chr4_2:55937499-55937518 None:intergenic 30.0%
ATTTGACGAAATGATTGACA+AGG - chr4_2:55937582-55937601 Msa0608720:intron 30.0%
ATCTAATTGATTACCAATGG+TGG - chr4_2:55937671-55937690 Msa0608720:intron 30.0%
TATGCTATATGTCCATTAAG+AGG + chr4_2:55937845-55937864 None:intergenic 30.0%
GACATATAGCATATATTTGC+TGG - chr4_2:55937852-55937871 Msa0608720:intron 30.0%
TGTAAGATGACACATTAAGA+AGG + chr4_2:55937999-55938018 None:intergenic 30.0%
CTTACAAGTCTCTTTATCAA+TGG - chr4_2:55938013-55938032 Msa0608720:intron 30.0%
CACTTGTTCTAATGAATAGT+TGG - chr4_2:55938064-55938083 Msa0608720:intron 30.0%
!! TAGTATTTTGAAAATGGTGG+GGG - chr4_2:55938204-55938223 Msa0608720:intron 30.0%
!! GTTGGTGATTTCCAAAATAA+TGG - chr4_2:55935598-55935617 Msa0608720:intron 30.0%
TCAAAAGTTGTAACTCTTCA+TGG - chr4_2:55935633-55935652 Msa0608720:intron 30.0%
CAAAAGTTGTAACTCTTCAT+GGG - chr4_2:55935634-55935653 Msa0608720:intron 30.0%
TGGGAATCATTCATATACAT+TGG - chr4_2:55935653-55935672 Msa0608720:intron 30.0%
ATACACTTGAATCAATGCAA+AGG + chr4_2:55935766-55935785 None:intergenic 30.0%
ATTAAACATCCCTTTGTCAA+AGG + chr4_2:55935799-55935818 None:intergenic 30.0%
ACTATAAATGCTTGGCATTT+GGG - chr4_2:55935881-55935900 Msa0608720:intron 30.0%
! GATTTAGAGTAAGAGAATGA+TGG + chr4_2:55935948-55935967 None:intergenic 30.0%
ACTGTATATTGGATGCAATA+AGG + chr4_2:55936108-55936127 None:intergenic 30.0%
TGCATCCAATATACAGTTAT+TGG - chr4_2:55936111-55936130 Msa0608720:intron 30.0%
ATCCAATATACAGTTATTGG+TGG - chr4_2:55936114-55936133 Msa0608720:intron 30.0%
TCCAATATACAGTTATTGGT+GGG - chr4_2:55936115-55936134 Msa0608720:intron 30.0%
TGTAAATGTGCATAAACTGT+TGG + chr4_2:55938983-55939002 None:intergenic 30.0%
AAATGCACCTATGATTCAAA+TGG + chr4_2:55939063-55939082 None:intergenic 30.0%
! TTTTCTATGGAATTTCAGCA+AGG + chr4_2:55939148-55939167 None:intergenic 30.0%
CATTCACAAACATCTATGAT+TGG - chr4_2:55939330-55939349 Msa0608720:intron 30.0%
GTTAAAACTCACAATGACAT+TGG + chr4_2:55939424-55939443 None:intergenic 30.0%
TTGATTGATATGTTTGTTCC+AGG - chr4_2:55939512-55939531 Msa0608720:intron 30.0%
TGATTGATATGTTTGTTCCA+GGG - chr4_2:55939513-55939532 Msa0608720:intron 30.0%
AAAATGGATACATGCAAATG+GGG - chr4_2:55939611-55939630 Msa0608720:intron 30.0%
! TCTTGTGTCTATTTCTTATG+TGG - chr4_2:55939665-55939684 Msa0608720:intron 30.0%
GAATCTTGCAATTGAAATCT+AGG - chr4_2:55939903-55939922 Msa0608720:intron 30.0%
TCATGAAACTGCATAAATTG+AGG + chr4_2:55940084-55940103 None:intergenic 30.0%
TTCCTTTACTACATTCACTA+TGG + chr4_2:55940121-55940140 None:intergenic 30.0%
!! GTTTGCTATGACAGATAATT+CGG - chr4_2:55940170-55940189 Msa0608720:intron 30.0%
ATGACATTAGTGTTTGTGAT+AGG + chr4_2:55940238-55940257 None:intergenic 30.0%
AAAGATGGAAAAATACCTGT+AGG + chr4_2:55940293-55940312 None:intergenic 30.0%
GGTATAAATTGTTGTCTAGT+AGG - chr4_2:55940657-55940676 Msa0608720:intron 30.0%
!! ACTTGTTAGGAAGCTTTATT+TGG - chr4_2:55940963-55940982 Msa0608720:CDS 30.0%
TTGTTCTTTGGTTACTTGAA+TGG - chr4_2:55940998-55941017 Msa0608720:CDS 30.0%
ATTAGGAATGACGTTTAAGA+AGG - chr4_2:55941041-55941060 Msa0608720:CDS 30.0%
TGTACTTTCGAATGTTAGAA+TGG - chr4_2:55941093-55941112 Msa0608720:CDS 30.0%
! CTTTGTTTGTCTTACGTTAA+AGG - chr4_2:55941146-55941165 Msa0608720:CDS 30.0%
!! CTTTAAAGCTATCTACTTCA+CGG - chr4_2:55941169-55941188 Msa0608720:intron 30.0%
! TTCATAGCTACTAGCTTGAA+GGG + chr4_2:55932497-55932516 None:intergenic 35.0%
AGCTTGAGGATAGAGTATAA+AGG + chr4_2:55932598-55932617 None:intergenic 35.0%
TTATACTCTATCCTCAAGCT+TGG - chr4_2:55932598-55932617 Msa0608720:three_prime_UTR 35.0%
GTGCTAGACAAGTTCTTATA+AGG - chr4_2:55932620-55932639 Msa0608720:three_prime_UTR 35.0%
!!! GGTTGATCAGTGTGTTTTTT+TGG - chr4_2:55932702-55932721 Msa0608720:CDS 35.0%
CTGAGAAAAACAACATACCT+TGG - chr4_2:55932748-55932767 Msa0608720:CDS 35.0%
AGAAAAACAACATACCTTGG+AGG - chr4_2:55932751-55932770 Msa0608720:CDS 35.0%
GAAAAACAACATACCTTGGA+GGG - chr4_2:55932752-55932771 Msa0608720:CDS 35.0%
GTCAGAAGTTTATAAGGAGT+TGG - chr4_2:55932797-55932816 Msa0608720:intron 35.0%
AATCAGGGTATACTAAAGAC+TGG + chr4_2:55932836-55932855 None:intergenic 35.0%
GCATGTTTCAACTGTATTGA+TGG - chr4_2:55932902-55932921 Msa0608720:intron 35.0%
! GTTTCAACTGTATTGATGGA+AGG - chr4_2:55932906-55932925 Msa0608720:intron 35.0%
CCTTCATCATATGCATGAAA+TGG + chr4_2:55932964-55932983 None:intergenic 35.0%
CCATTTCATGCATATGATGA+AGG - chr4_2:55932961-55932980 Msa0608720:intron 35.0%
ATGATGAAGGGAATCTTACA+TGG - chr4_2:55932974-55932993 Msa0608720:intron 35.0%
ACCATAGATATGTTCCTCTT+TGG - chr4_2:55933085-55933104 Msa0608720:intron 35.0%
ACCAAAGAGGAACATATCTA+TGG + chr4_2:55933089-55933108 None:intergenic 35.0%
ATAATTACCAATGTCGTGTC+CGG + chr4_2:55933154-55933173 None:intergenic 35.0%
! ACACCATCAATCTAAAGTGT+CGG - chr4_2:55933248-55933267 Msa0608720:intron 35.0%
AAATGTGTTGGGAAGAACAA+CGG + chr4_2:55933284-55933303 None:intergenic 35.0%
! TGTTCTTCCCAACACATTTT+TGG - chr4_2:55933285-55933304 Msa0608720:intron 35.0%
! TTTAGAGTGTGTTTGGATAG+AGG - chr4_2:55933372-55933391 Msa0608720:CDS 35.0%
GGTGAAAAATATTAGACACG+TGG + chr4_2:55933917-55933936 None:intergenic 35.0%
AATAATCCCCACAACAAATG+CGG - chr4_2:55934044-55934063 Msa0608720:intron 35.0%
AATGGAAGAATGACGACTAT+AGG + chr4_2:55934167-55934186 None:intergenic 35.0%
!! TTTGTGCAGTTGATGATTGA+AGG + chr4_2:55934216-55934235 None:intergenic 35.0%
CTTGCTCCAGAAATTATCTT+TGG + chr4_2:55934269-55934288 None:intergenic 35.0%
AGAGTCACTTGACTTAGTTA+GGG + chr4_2:55934303-55934322 None:intergenic 35.0%
AAGAGTCACTTGACTTAGTT+AGG + chr4_2:55934304-55934323 None:intergenic 35.0%
TAACTAAGTCAAGTGACTCT+TGG - chr4_2:55934303-55934322 Msa0608720:CDS 35.0%
TGCCAGATTTATGCTATAGT+TGG + chr4_2:55934506-55934525 None:intergenic 35.0%
ATTCAGCAGAGAAATTACCT+TGG - chr4_2:55934639-55934658 Msa0608720:intron 35.0%
TTGTGAGAGAAAACTGAGAA+AGG - chr4_2:55935180-55935199 Msa0608720:intron 35.0%
! TTTTCCCAAACAGTGGAATT+TGG - chr4_2:55935353-55935372 Msa0608720:intron 35.0%
TTTCCCAAACAGTGGAATTT+GGG - chr4_2:55935354-55935373 Msa0608720:intron 35.0%
!!! GAGGGAATGTAATTTTTTGG+AGG + chr4_2:55935396-55935415 None:intergenic 35.0%
! TTTGCTGGACCTTTTATGTT+TGG - chr4_2:55935543-55935562 Msa0608720:intron 35.0%
! TTGCTGGACCTTTTATGTTT+GGG - chr4_2:55935544-55935563 Msa0608720:intron 35.0%
! ATTAAGCACCCTTTTGTCAA+AGG + chr4_2:55935740-55935759 None:intergenic 35.0%
! GGTGTTTTCTCTCATATGAA+GGG - chr4_2:55935847-55935866 Msa0608720:intron 35.0%
CACTATAAATGCTTGGCATT+TGG - chr4_2:55935880-55935899 Msa0608720:intron 35.0%
CTCATGCATTAGAGAATTGA+TGG + chr4_2:55935973-55935992 None:intergenic 35.0%
ATACTGTTAGGAGATACGTT+TGG - chr4_2:55936021-55936040 Msa0608720:intron 35.0%
CCAATATACAGTTATTGGTG+GGG - chr4_2:55936116-55936135 Msa0608720:intron 35.0%
CAATATACAGTTATTGGTGG+GGG - chr4_2:55936117-55936136 Msa0608720:intron 35.0%
ATGTAATCTCAAAGCGTATG+GGG + chr4_2:55936172-55936191 None:intergenic 35.0%
CATGTAATCTCAAAGCGTAT+GGG + chr4_2:55936173-55936192 None:intergenic 35.0%
AGTCATCTTCATCATCTTCT+TGG - chr4_2:55936292-55936311 Msa0608720:intron 35.0%
AGATTGTTGGAACTTGTGTT+GGG + chr4_2:55936338-55936357 None:intergenic 35.0%
AAGATTGTTGGAACTTGTGT+TGG + chr4_2:55936339-55936358 None:intergenic 35.0%
CACAAGTTCCAACAATCTTT+AGG - chr4_2:55936340-55936359 Msa0608720:intron 35.0%
GCTTGTGTTAAGTTTACATG+TGG - chr4_2:55936515-55936534 Msa0608720:intron 35.0%
CATAGCCAAACTTCATAAGA+TGG + chr4_2:55937237-55937256 None:intergenic 35.0%
! CAATTGACAAAAGTGTGTCA+TGG - chr4_2:55937429-55937448 Msa0608720:intron 35.0%
! TGTCATGGTTTGATGATAGT+TGG - chr4_2:55937444-55937463 Msa0608720:intron 35.0%
TTGACAAGGAATGATGTCTT+TGG - chr4_2:55937596-55937615 Msa0608720:intron 35.0%
TGAAGACATTATTAGGGATG+TGG - chr4_2:55937637-55937656 Msa0608720:intron 35.0%
TGACAATAGATAACATCCCA+AGG - chr4_2:55937771-55937790 Msa0608720:intron 35.0%
GACAATAGATAACATCCCAA+GGG - chr4_2:55937772-55937791 Msa0608720:intron 35.0%
ACAATAGATAACATCCCAAG+GGG - chr4_2:55937773-55937792 Msa0608720:intron 35.0%
ACCATAAGAAGAAAAACGGT+AGG - chr4_2:55937809-55937828 Msa0608720:intron 35.0%
!! TCCTACCGTTTTTCTTCTTA+TGG + chr4_2:55937813-55937832 None:intergenic 35.0%
TTTGCTGGAATGCATACTTA+TGG - chr4_2:55937867-55937886 Msa0608720:intron 35.0%
TTGCTGGAATGCATACTTAT+GGG - chr4_2:55937868-55937887 Msa0608720:intron 35.0%
CTCACATAGGTAGACTATAT+CGG + chr4_2:55937900-55937919 None:intergenic 35.0%
ACCTATGTGAGAATGAAGTT+TGG - chr4_2:55937909-55937928 Msa0608720:intron 35.0%
GAAAAGGGATATATGACACA+AGG - chr4_2:55937973-55937992 Msa0608720:intron 35.0%
TCATTCCCAAATAGTATGGT+AGG + chr4_2:55938101-55938120 None:intergenic 35.0%
AATTCCATGCCTTCAGATAA+TGG + chr4_2:55938167-55938186 None:intergenic 35.0%
! ATTAAGCACCCTTTTGTCAA+AGG + chr4_2:55935740-55935759 None:intergenic 35.0%
! GGTGTTTTCTCTCATATGAA+GGG - chr4_2:55935847-55935866 Msa0608720:intron 35.0%
CACTATAAATGCTTGGCATT+TGG - chr4_2:55935880-55935899 Msa0608720:intron 35.0%
CTCATGCATTAGAGAATTGA+TGG + chr4_2:55935973-55935992 None:intergenic 35.0%
ATACTGTTAGGAGATACGTT+TGG - chr4_2:55936021-55936040 Msa0608720:intron 35.0%
CCAATATACAGTTATTGGTG+GGG - chr4_2:55936116-55936135 Msa0608720:intron 35.0%
CAATATACAGTTATTGGTGG+GGG - chr4_2:55936117-55936136 Msa0608720:intron 35.0%
ATCGAACCTAAAGGTTAGTA+TGG - chr4_2:55936143-55936162 Msa0608720:intron 35.0%
ATGTAATCTCAAAGCGTATG+GGG + chr4_2:55936172-55936191 None:intergenic 35.0%
CATGTAATCTCAAAGCGTAT+GGG + chr4_2:55936173-55936192 None:intergenic 35.0%
AGTCATCTTCATCATCTTCT+TGG - chr4_2:55936292-55936311 Msa0608720:intron 35.0%
AAACTGTTGGAACTTGTGTT+GGG + chr4_2:55938970-55938989 None:intergenic 35.0%
TAAACTGTTGGAACTTGTGT+TGG + chr4_2:55938971-55938990 None:intergenic 35.0%
TTGGCAACCATTTGAATCAT+AGG - chr4_2:55939053-55939072 Msa0608720:intron 35.0%
! ATTGGTGACATTCTAGACAT+TGG - chr4_2:55939348-55939367 Msa0608720:intron 35.0%
AGTAAGCTCAAGATTTCTTG+CGG - chr4_2:55939383-55939402 Msa0608720:intron 35.0%
! TGTAAAAGAAGCCTTGTGTA+TGG - chr4_2:55939475-55939494 Msa0608720:intron 35.0%
TCATGTACATACCATACACA+AGG + chr4_2:55939489-55939508 None:intergenic 35.0%
GATTGATATGTTTGTTCCAG+GGG - chr4_2:55939514-55939533 Msa0608720:intron 35.0%
GCAGCATTCTACGAATTTAA+CGG + chr4_2:55939716-55939735 None:intergenic 35.0%
AATTGCAAGATTCGTTTCCT+AGG + chr4_2:55939896-55939915 None:intergenic 35.0%
AGCCATAGTGAATGTAGTAA+AGG - chr4_2:55940116-55940135 Msa0608720:intron 35.0%
! GATAGCTTTTCCCTATATTG+TGG - chr4_2:55940357-55940376 Msa0608720:intron 35.0%
TTCATCAATGTAAACAGGAC+AGG + chr4_2:55940735-55940754 None:intergenic 35.0%
TGCTCTTCATCAATGTAAAC+AGG + chr4_2:55940740-55940759 None:intergenic 35.0%
AAGTAGTACTCGTCAAGAAA+GGG + chr4_2:55940768-55940787 None:intergenic 35.0%
AATCAATTCTTACCAACCCT+AGG - chr4_2:55940835-55940854 Msa0608720:intron 35.0%
AATCCCAAGATGTTTCATTG+AGG + chr4_2:55940885-55940904 None:intergenic 35.0%
CTGTGAACATTATCCAATCT+TGG - chr4_2:55941197-55941216 Msa0608720:intron 35.0%
! CTTGTATTGACAACCAAGAT+TGG + chr4_2:55941213-55941232 None:intergenic 35.0%
! GAAACTGGAAGTGCAAATTG+TGG + chr4_2:55932309-55932328 None:intergenic 40.0%
! CTTCATAGCTACTAGCTTGA+AGG + chr4_2:55932498-55932517 None:intergenic 40.0%
CAAGCTAGTAGCTATGAAGA+AGG - chr4_2:55932499-55932518 Msa0608720:three_prime_UTR 40.0%
TAGCTATGAAGAAGGAAAGC+TGG - chr4_2:55932507-55932526 Msa0608720:three_prime_UTR 40.0%
GAAAGCTGGTAAGACCAAAA+TGG - chr4_2:55932521-55932540 Msa0608720:three_prime_UTR 40.0%
AGCAAAGTGAGTAGAAGCAA+TGG + chr4_2:55932654-55932673 None:intergenic 40.0%
!! TCTTTTGTCATTTCCCTCCA+AGG + chr4_2:55932768-55932787 None:intergenic 40.0%
!! TGAAGCATTGACACAAACAC+CGG - chr4_2:55933132-55933151 Msa0608720:intron 40.0%
!! TGTATACCGCATTTGTTGTG+GGG + chr4_2:55934053-55934072 None:intergenic 40.0%
!! GTGTATACCGCATTTGTTGT+GGG + chr4_2:55934054-55934073 None:intergenic 40.0%
! TGTGTATACCGCATTTGTTG+TGG + chr4_2:55934055-55934074 None:intergenic 40.0%
GGAAGGATGACAACTACAAT+TGG + chr4_2:55934094-55934113 None:intergenic 40.0%
! TATAGGTGGACTTGTGACAA+TGG + chr4_2:55934115-55934134 None:intergenic 40.0%
AATGGAAGGATGACGACTAT+AGG + chr4_2:55934132-55934151 None:intergenic 40.0%
! TATAGGTGGACTTGCGAAAA+TGG + chr4_2:55934150-55934169 None:intergenic 40.0%
GATTGAAGGATGACGACTAT+AGG + chr4_2:55934202-55934221 None:intergenic 40.0%
GAGTCACTTGACTTAGTTAG+GGG + chr4_2:55934302-55934321 None:intergenic 40.0%
! TGACTCTTGGAAAGTTGATC+AGG - chr4_2:55934316-55934335 Msa0608720:CDS 40.0%
TCTTCTATGTCTTGAGACCA+AGG + chr4_2:55934659-55934678 None:intergenic 40.0%
CTCAACCTTCACAAAACCAA+CGG - chr4_2:55934752-55934771 Msa0608720:intron 40.0%
!!! TTGTTCCGTTGGTTTTGTGA+AGG + chr4_2:55934760-55934779 None:intergenic 40.0%
AAACGAACCTTGAATCGAAC+TGG - chr4_2:55934805-55934824 Msa0608720:intron 40.0%
TGACCCAAATTCCACTGTTT+GGG + chr4_2:55935360-55935379 None:intergenic 40.0%
TTGACCCAAATTCCACTGTT+TGG + chr4_2:55935361-55935380 None:intergenic 40.0%
! CAGTCAAAAGACGTTTTTGC+TGG - chr4_2:55935528-55935547 Msa0608720:intron 40.0%
! GGGTGTTTTCTCTCATATGA+AGG - chr4_2:55935846-55935865 Msa0608720:intron 40.0%
CTAATGCATGAGTGAATTGC+TGG - chr4_2:55935981-55936000 Msa0608720:intron 40.0%
AGGAACTCATAGTATCCTGA+AGG - chr4_2:55936066-55936085 Msa0608720:intron 40.0%
GGAACTCATAGTATCCTGAA+GGG - chr4_2:55936067-55936086 Msa0608720:intron 40.0%
GAACTCATAGTATCCTGAAG+GGG - chr4_2:55936068-55936087 Msa0608720:intron 40.0%
TGGATGCAATAAGGAATGAC+CGG + chr4_2:55936099-55936118 None:intergenic 40.0%
CCCCACCAATAACTGTATAT+TGG + chr4_2:55936119-55936138 None:intergenic 40.0%
GGGTTGTCATACTAACCTTT+AGG + chr4_2:55936152-55936171 None:intergenic 40.0%
GCATGTAATCTCAAAGCGTA+TGG + chr4_2:55936174-55936193 None:intergenic 40.0%
ATTGTTGGAACTTGTGTTGG+GGG + chr4_2:55936336-55936355 None:intergenic 40.0%
GATTGTTGGAACTTGTGTTG+GGG + chr4_2:55936337-55936356 None:intergenic 40.0%
ACTTGATGCTACTCAAGTGT+GGG + chr4_2:55937705-55937724 None:intergenic 40.0%
ACTTGAGTAGCATCAAGTCT+TGG - chr4_2:55937707-55937726 Msa0608720:intron 40.0%
CTTGAGTAGCATCAAGTCTT+GGG - chr4_2:55937708-55937727 Msa0608720:intron 40.0%
AGAAGAAAAACGGTAGGATG+AGG - chr4_2:55937815-55937834 Msa0608720:intron 40.0%
! GGATGAGGTTTTCCTCTTAA+TGG - chr4_2:55937830-55937849 Msa0608720:intron 40.0%
TGCTGGAATGCATACTTATG+GGG - chr4_2:55937869-55937888 Msa0608720:intron 40.0%
GCCAAACTTCATTCTCACAT+AGG + chr4_2:55937913-55937932 None:intergenic 40.0%
AGCTTGCCTACCATACTATT+TGG - chr4_2:55938092-55938111 Msa0608720:intron 40.0%
GCTTGCCTACCATACTATTT+GGG - chr4_2:55938093-55938112 Msa0608720:intron 40.0%
TCGCTCATTCCCAAATAGTA+TGG + chr4_2:55938105-55938124 None:intergenic 40.0%
GATACCATTATCTGAAGGCA+TGG - chr4_2:55938160-55938179 Msa0608720:intron 40.0%
! ATCTGAAGGCATGGAATTTC+CGG - chr4_2:55938169-55938188 Msa0608720:intron 40.0%
! GGGTGTTTTCTCTCATATGA+AGG - chr4_2:55935846-55935865 Msa0608720:intron 40.0%
CTAATGCATGAGTGAATTGC+TGG - chr4_2:55935981-55936000 Msa0608720:intron 40.0%
AGGAACTCATAGTATCCTGA+AGG - chr4_2:55936066-55936085 Msa0608720:intron 40.0%
GGAACTCATAGTATCCTGAA+GGG - chr4_2:55936067-55936086 Msa0608720:intron 40.0%
GAACTCATAGTATCCTGAAG+GGG - chr4_2:55936068-55936087 Msa0608720:intron 40.0%
TGGATGCAATAAGGAATGAC+CGG + chr4_2:55936099-55936118 None:intergenic 40.0%
CCCCACCAATAACTGTATAT+TGG + chr4_2:55936119-55936138 None:intergenic 40.0%
GCATGTAATCTCAAAGCGTA+TGG + chr4_2:55936174-55936193 None:intergenic 40.0%
AACTGTTGGAACTTGTGTTG+GGG + chr4_2:55938969-55938988 None:intergenic 40.0%
TCTAGACATTGGATGTTCTG+TGG - chr4_2:55939359-55939378 Msa0608720:intron 40.0%
CTAGACATTGGATGTTCTGT+GGG - chr4_2:55939360-55939379 Msa0608720:intron 40.0%
TGAGCCACAGCTAGAAAATA+GGG + chr4_2:55939552-55939571 None:intergenic 40.0%
GAATTTAACGGAGGACTAAG+GGG + chr4_2:55939704-55939723 None:intergenic 40.0%
CGAATTTAACGGAGGACTAA+GGG + chr4_2:55939705-55939724 None:intergenic 40.0%
ACGAATTTAACGGAGGACTA+AGG + chr4_2:55939706-55939725 None:intergenic 40.0%
GCATTCTACGAATTTAACGG+AGG + chr4_2:55939713-55939732 None:intergenic 40.0%
! CGTTCAGCTGTATGTTGTTT+AGG + chr4_2:55939955-55939974 None:intergenic 40.0%
AACAACATACAGCTGAACGA+TGG - chr4_2:55939956-55939975 Msa0608720:intron 40.0%
TACTAGAATCTGCGTCTAGT+AGG + chr4_2:55940505-55940524 None:intergenic 40.0%
CAAGTAGTACTCGTCAAGAA+AGG + chr4_2:55940769-55940788 None:intergenic 40.0%
CGAGTACTACTTGACTGATA+TGG - chr4_2:55940776-55940795 Msa0608720:CDS 40.0%
TGATATGGACCAAACACTGA+AGG - chr4_2:55940791-55940810 Msa0608720:intron 40.0%
TGTGCCTCAATGAAACATCT+TGG - chr4_2:55940878-55940897 Msa0608720:intron 40.0%
GTGCCTCAATGAAACATCTT+GGG - chr4_2:55940879-55940898 Msa0608720:intron 40.0%
TAGAATGGATGAGCAGCTTA+AGG - chr4_2:55941108-55941127 Msa0608720:CDS 40.0%
AGAATGGATGAGCAGCTTAA+GGG - chr4_2:55941109-55941128 Msa0608720:CDS 40.0%
TGTGTGTGTGTGTGTGAAAC+TGG + chr4_2:55932324-55932343 None:intergenic 45.0%
ACACACACACACACACACAA+TGG - chr4_2:55932345-55932364 Msa0608720:three_prime_UTR 45.0%
TCATCATTAATCTCCCCGCA+TGG - chr4_2:55932394-55932413 Msa0608720:three_prime_UTR 45.0%
TTGAAGGGAGGTTGTTGTGT+CGG + chr4_2:55932482-55932501 None:intergenic 45.0%
! ATAGCTACTAGCTTGAAGGG+AGG + chr4_2:55932494-55932513 None:intergenic 45.0%
CTGGTAAGACCAAAATGGAC+TGG - chr4_2:55932526-55932545 Msa0608720:three_prime_UTR 45.0%
TGAAGGGAATCTTACATGGC+TGG - chr4_2:55932978-55932997 Msa0608720:intron 45.0%
! GCACCGACACTTTAGATTGA+TGG + chr4_2:55933254-55933273 None:intergenic 45.0%
GGAAGAATGACGACTATAGG+TGG + chr4_2:55934164-55934183 None:intergenic 45.0%
! TATAGGTGGACTTGCGACAA+TGG + chr4_2:55934185-55934204 None:intergenic 45.0%
TGAAGGATGACGACTATAGG+TGG + chr4_2:55934199-55934218 None:intergenic 45.0%
!!! CGTTGGTTTTGTGAAGGTTG+AGG + chr4_2:55934754-55934773 None:intergenic 45.0%
AGAGTCGCGTGTGATGAAAA+CGG - chr4_2:55935035-55935054 Msa0608720:intron 45.0%
CATATCTTGGATGGAAGCCA+AGG + chr4_2:55935496-55935515 None:intergenic 45.0%
CTTGGCATTTGGGCATTAGT+TGG - chr4_2:55935891-55935910 Msa0608720:intron 45.0%
! GTTAGGAGATACGTTTGGTG+TGG - chr4_2:55936026-55936045 Msa0608720:intron 45.0%
TGGTTGTGCAATACACGTCA+AGG - chr4_2:55936046-55936065 Msa0608720:intron 45.0%
TCATCCATGACTACGGTGAA+CGG - chr4_2:55936427-55936446 Msa0608720:intron 45.0%
TTTACCGTTCACCGTAGTCA+TGG + chr4_2:55936434-55936453 None:intergenic 45.0%
GACTTGATGCTACTCAAGTG+TGG + chr4_2:55937706-55937725 None:intergenic 45.0%
GCATCAAGTCTTGGGTTCAA+TGG - chr4_2:55937716-55937735 Msa0608720:intron 45.0%
AATGAAGTTTGGCCGCTTCA+CGG - chr4_2:55937920-55937939 Msa0608720:intron 45.0%
CGCGAGATACCATTATCTGA+AGG - chr4_2:55938155-55938174 Msa0608720:intron 45.0%
! TGAAAATGGTGGGGGATTGT+TGG - chr4_2:55938212-55938231 Msa0608720:intron 45.0%
CTTGGCATTTGGGCATTAGT+TGG - chr4_2:55935891-55935910 Msa0608720:intron 45.0%
! GTTAGGAGATACGTTTGGTG+TGG - chr4_2:55936026-55936045 Msa0608720:intron 45.0%
TGGTTGTGCAATACACGTCA+AGG - chr4_2:55936046-55936065 Msa0608720:intron 45.0%
GGGTTGCCATACTAACCTTT+AGG + chr4_2:55938784-55938803 None:intergenic 45.0%
ACTGTTGGAACTTGTGTTGG+GGG + chr4_2:55938968-55938987 None:intergenic 45.0%
!! CATTGACTTAGTAGCAGCCT+CGG + chr4_2:55939214-55939233 None:intergenic 45.0%
TCTTCTACTGATGAAGCGGT+AGG + chr4_2:55939252-55939271 None:intergenic 45.0%
CGCTTCTTCTACTGATGAAG+CGG + chr4_2:55939256-55939275 None:intergenic 45.0%
CGCAGATAATGCGTGACAAT+TGG - chr4_2:55939277-55939296 Msa0608720:intron 45.0%
TCACAATGACATTGGCCGTA+GGG + chr4_2:55939416-55939435 None:intergenic 45.0%
!!! GTCACCCTATTTTCTAGCTG+TGG - chr4_2:55939545-55939564 Msa0608720:intron 45.0%
CTGAGCCACAGCTAGAAAAT+AGG + chr4_2:55939553-55939572 None:intergenic 45.0%
GCTCAGCATAAGGAAAAGAG+CGG - chr4_2:55939567-55939586 Msa0608720:intron 45.0%
ACATGCAAATGGGGAAGACA+CGG - chr4_2:55939620-55939639 Msa0608720:intron 45.0%
! GTTTAGGACTTGTGACTTGC+AGG + chr4_2:55939939-55939958 None:intergenic 45.0%
ACATTCACTATGGCTCTTGC+AGG + chr4_2:55940111-55940130 None:intergenic 45.0%
! ACCTGTAGGACCTTTGACTT+TGG + chr4_2:55940279-55940298 None:intergenic 45.0%
AACCAGCTTCCTTCAGTGTT+TGG + chr4_2:55940803-55940822 None:intergenic 45.0%
GAATGGATGAGCAGCTTAAG+GGG - chr4_2:55941110-55941129 Msa0608720:CDS 45.0%
!! AATAAAATTTAATTAAAGAA+AGG + chr4_2:55933545-55933564 None:intergenic 5.0%
GCGGGGAGATTAATGATGAG+AGG + chr4_2:55932393-55932412 None:intergenic 50.0%
CATCACCACCACTACCACAA+AGG - chr4_2:55932417-55932436 Msa0608720:three_prime_UTR 50.0%
! TGTTGGTGCCTTTGTGGTAG+TGG + chr4_2:55932428-55932447 None:intergenic 50.0%
!! CTACCACAAAGGCACCAACA+CGG - chr4_2:55932428-55932447 Msa0608720:three_prime_UTR 50.0%
! GGAGTCTCTCCAGTCCATTT+TGG + chr4_2:55932538-55932557 None:intergenic 50.0%
CTTGTCTAGCACCAAGCTTG+AGG + chr4_2:55932612-55932631 None:intergenic 50.0%
ACAAACACCGGACACGACAT+TGG - chr4_2:55933144-55933163 Msa0608720:intron 50.0%
GTGTGGACACTGACACATGT+TGG - chr4_2:55933223-55933242 Msa0608720:intron 50.0%
! GGTGGACTTGTGACAATGGA+AGG + chr4_2:55934111-55934130 None:intergenic 50.0%
GGAAGGATGACGACTATAGG+TGG + chr4_2:55934129-55934148 None:intergenic 50.0%
! GGTGGACTTGCGAAAATGGA+AGG + chr4_2:55934146-55934165 None:intergenic 50.0%
GAGGAGAGAGAAAACTGTCG+CGG - chr4_2:55935062-55935081 Msa0608720:intron 50.0%
AGAAGGAGAGAGGAGAGACA+CGG - chr4_2:55935140-55935159 Msa0608720:intron 50.0%
! GTGGGTTGAGTTTCCACCAT+TGG + chr4_2:55937687-55937706 None:intergenic 50.0%
AACCCTTGAACTCCGTGAAG+CGG + chr4_2:55937935-55937954 None:intergenic 50.0%
CGAGGCTGCTACTAAGTCAA+TGG - chr4_2:55939212-55939231 Msa0608720:intron 50.0%
TCTTGCGGACAAGTTCCCTA+CGG - chr4_2:55939398-55939417 Msa0608720:intron 50.0%
CTCACAATGACATTGGCCGT+AGG + chr4_2:55939417-55939436 None:intergenic 50.0%
TCTAGCTGTGGCTCAGCATA+AGG - chr4_2:55939557-55939576 Msa0608720:intron 50.0%
CATGCAAATGGGGAAGACAC+GGG - chr4_2:55939621-55939640 Msa0608720:intron 50.0%
!! AGGAAGCATTCCGTCTCCTT+CGG - chr4_2:55940136-55940155 Msa0608720:intron 50.0%
! CCTTTGACTTTGGCTGCAGA+AGG + chr4_2:55940269-55940288 None:intergenic 50.0%
CCTTCTGCAGCCAAAGTCAA+AGG - chr4_2:55940266-55940285 Msa0608720:intron 50.0%
GCCAAAGTCAAAGGTCCTAC+AGG - chr4_2:55940275-55940294 Msa0608720:intron 50.0%
GACCAAACACTGAAGGAAGC+TGG - chr4_2:55940798-55940817 Msa0608720:intron 50.0%
TAAAGTCACGTGCCTAGGGT+TGG + chr4_2:55940850-55940869 None:intergenic 50.0%
CCGTTAAAGTCACGTGCCTA+GGG + chr4_2:55940854-55940873 None:intergenic 50.0%
CCCTAGGCACGTGACTTTAA+CGG - chr4_2:55940851-55940870 Msa0608720:intron 50.0%
! TAGTGGTGGTGATGCCATGC+GGG + chr4_2:55932411-55932430 None:intergenic 55.0%
! GTAGTGGTGGTGATGCCATG+CGG + chr4_2:55932412-55932431 None:intergenic 55.0%
!! TGGTGCCTTTGTGGTAGTGG+TGG + chr4_2:55932425-55932444 None:intergenic 55.0%
AGAGACTCCTCTCTCTCGCA+TGG - chr4_2:55932549-55932568 Msa0608720:three_prime_UTR 55.0%
ATCACACGCGACTCTCACTC+AGG + chr4_2:55935030-55935049 None:intergenic 55.0%
GTCGCGTGTGATGAAAACGG+CGG - chr4_2:55935038-55935057 Msa0608720:intron 55.0%
GAGAGAAAACTGTCGCGGAG+AGG - chr4_2:55935067-55935086 Msa0608720:intron 55.0%
CGGAGAGGAGAGACAGCAAA+CGG - chr4_2:55935082-55935101 Msa0608720:intron 55.0%
AGAGGAGAGACAGCAAACGG+CGG - chr4_2:55935085-55935104 Msa0608720:intron 55.0%
GTCTCTCCTCTCTCCTTCTG+CGG + chr4_2:55935139-55935158 None:intergenic 55.0%
AGAGAGGAGAGACACGGTGA+AGG - chr4_2:55935146-55935165 Msa0608720:intron 55.0%
GTATCCTGAAGGGGATTCGC+CGG - chr4_2:55936077-55936096 Msa0608720:intron 55.0%
TGGGGGCGAATCGAACCTAA+AGG - chr4_2:55936134-55936153 Msa0608720:intron 55.0%
GTATCCTGAAGGGGATTCGC+CGG - chr4_2:55936077-55936096 Msa0608720:intron 55.0%
TGGGGGCGAATCGAACCTAA+AGG - chr4_2:55936134-55936153 Msa0608720:intron 55.0%
AGGGTGACATATCTAGCCCC+TGG + chr4_2:55939533-55939552 None:intergenic 55.0%
GTCATAGCAAACGTGCCTCC+AGG + chr4_2:55940162-55940181 None:intergenic 55.0%
GCCGTTAAAGTCACGTGCCT+AGG + chr4_2:55940855-55940874 None:intergenic 55.0%
! AGTGGTGGTGATGCCATGCG+GGG + chr4_2:55932410-55932429 None:intergenic 60.0%
! ACGCCGTGTTGGTGCCTTTG+TGG + chr4_2:55932434-55932453 None:intergenic 60.0%
TCACGTGGTGGTTCACGCTG+CGG - chr4_2:55932453-55932472 Msa0608720:three_prime_UTR 60.0%
GCTCGAACCATGCGAGAGAG+AGG + chr4_2:55932559-55932578 None:intergenic 60.0%
CCACACGACACCGACACATG+TGG + chr4_2:55933209-55933228 None:intergenic 60.0%
!! CCACATGTGTCGGTGTCGTG+TGG - chr4_2:55933206-55933225 Msa0608720:intron 60.0%
GTGTGATGAAAACGGCGGCG+AGG - chr4_2:55935043-55935062 Msa0608720:intron 60.0%
TCTCCTCTCTCCTTCTGCGG+CGG + chr4_2:55935136-55935155 None:intergenic 60.0%
ATGACCGGCGAATCCCCTTC+AGG + chr4_2:55936084-55936103 None:intergenic 60.0%
TGGCCGCTTCACGGAGTTCA+AGG - chr4_2:55937929-55937948 Msa0608720:intron 60.0%
GGCCGCTTCACGGAGTTCAA+GGG - chr4_2:55937930-55937949 Msa0608720:intron 60.0%
ATGACCGGCGAATCCCCTTC+AGG + chr4_2:55936084-55936103 None:intergenic 60.0%
ATAGGCAGCAGCAGAAGCCG+AGG - chr4_2:55939194-55939213 Msa0608720:intron 60.0%
ACCAACACGGCGTCACGTGG+TGG - chr4_2:55932441-55932460 Msa0608720:three_prime_UTR 65.0%
ACCACCACGTGACGCCGTGT+TGG + chr4_2:55932445-55932464 None:intergenic 65.0%
GGAGAGACAGCAAACGGCGG+CGG - chr4_2:55935088-55935107 Msa0608720:intron 65.0%
!! GAGAGAAGCACCGCCGCAGA+AGG - chr4_2:55935123-55935142 Msa0608720:intron 65.0%
GCATTCCGTCTCCTTCGGCC+TGG - chr4_2:55940141-55940160 Msa0608720:intron 65.0%
TTCCGTCTCCTTCGGCCTGG+AGG - chr4_2:55940144-55940163 Msa0608720:intron 65.0%
TGCCTCCAGGCCGAAGGAGA+CGG + chr4_2:55940149-55940168 None:intergenic 65.0%
CAAACGTGCCTCCAGGCCGA+AGG + chr4_2:55940155-55940174 None:intergenic 65.0%
GGCACCAACACGGCGTCACG+TGG - chr4_2:55932438-55932457 Msa0608720:three_prime_UTR 70.0%
ACAGCAAACGGCGGCGGCGA+CGG - chr4_2:55935094-55935113 Msa0608720:intron 70.0%
GCACCGCCGCAGAAGGAGAG+AGG - chr4_2:55935130-55935149 Msa0608720:intron 70.0%
! AAACGGCGGCGGCGACGGCG+AGG - chr4_2:55935099-55935118 Msa0608720:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 55932306 55941232 55932306 ID=Msa0608720;Name=Msa0608720
chr4_2 mRNA 55932306 55941232 55932306 ID=Msa0608720-mRNA-1;Parent=Msa0608720;Name=Msa0608720-mRNA-1;_AED=0.28;_eAED=0.28;_QI=38|1|1|1|0.87|0.77|9|342|370
chr4_2 exon 55932306 55932815 55932306 ID=Msa0608720-mRNA-1:exon:14358;Parent=Msa0608720-mRNA-1
chr4_2 exon 55933242 55933262 55933242 ID=Msa0608720-mRNA-1:exon:14357;Parent=Msa0608720-mRNA-1
chr4_2 exon 55933347 55933442 55933347 ID=Msa0608720-mRNA-1:exon:14356;Parent=Msa0608720-mRNA-1
chr4_2 exon 55933852 55934004 55933852 ID=Msa0608720-mRNA-1:exon:14355;Parent=Msa0608720-mRNA-1
chr4_2 exon 55934107 55934340 55934107 ID=Msa0608720-mRNA-1:exon:14354;Parent=Msa0608720-mRNA-1
chr4_2 exon 55940539 55940588 55940539 ID=Msa0608720-mRNA-1:exon:14353;Parent=Msa0608720-mRNA-1
chr4_2 exon 55940683 55940795 55940683 ID=Msa0608720-mRNA-1:exon:14352;Parent=Msa0608720-mRNA-1
chr4_2 exon 55940897 55941187 55940897 ID=Msa0608720-mRNA-1:exon:14351;Parent=Msa0608720-mRNA-1
chr4_2 exon 55941208 55941232 55941208 ID=Msa0608720-mRNA-1:exon:14350;Parent=Msa0608720-mRNA-1
chr4_2 five_prime_UTR 55941208 55941232 55941208 ID=Msa0608720-mRNA-1:five_prime_utr;Parent=Msa0608720-mRNA-1
chr4_2 five_prime_UTR 55941175 55941187 55941175 ID=Msa0608720-mRNA-1:five_prime_utr;Parent=Msa0608720-mRNA-1
chr4_2 CDS 55940897 55941174 55940897 ID=Msa0608720-mRNA-1:cds;Parent=Msa0608720-mRNA-1
chr4_2 CDS 55940683 55940795 55940683 ID=Msa0608720-mRNA-1:cds;Parent=Msa0608720-mRNA-1
chr4_2 CDS 55940539 55940588 55940539 ID=Msa0608720-mRNA-1:cds;Parent=Msa0608720-mRNA-1
chr4_2 CDS 55934107 55934340 55934107 ID=Msa0608720-mRNA-1:cds;Parent=Msa0608720-mRNA-1
chr4_2 CDS 55933852 55934004 55933852 ID=Msa0608720-mRNA-1:cds;Parent=Msa0608720-mRNA-1
chr4_2 CDS 55933347 55933442 55933347 ID=Msa0608720-mRNA-1:cds;Parent=Msa0608720-mRNA-1
chr4_2 CDS 55933242 55933262 55933242 ID=Msa0608720-mRNA-1:cds;Parent=Msa0608720-mRNA-1
chr4_2 CDS 55932648 55932815 55932648 ID=Msa0608720-mRNA-1:cds;Parent=Msa0608720-mRNA-1
chr4_2 three_prime_UTR 55932306 55932647 55932306 ID=Msa0608720-mRNA-1:three_prime_utr;Parent=Msa0608720-mRNA-1
Gene Sequence

>Msa0608720

ATGGCTCTGTCTTCACAACTTCAGAACCTCTCATCATTAATCTCCCCGCATGGCATCACCACCACTACCACAAAGGCACCAACACGGCGTCACGTGGTGGTTCACGCTGCGGCTTCCGACACAACAACCTCCCTTCAAGCTAGTAGCTATGAAGAAGGAAAGCTGGTAAGACCAAAATGGACTGGAGAGACTCCTCTCTCTCGCATGGTTCGAGCTCTCATATCTTTCAAGCCTTTATACTCTATCCTCAAGCTTGGTGCTAGACAAGTTCTTATAAGTACAGCTGAGAAAAACAACATACCTTGGAGGGAAATGACAAAAGAGATTTTGGAGTCAGAAGTTTATAAGGAGTTGGATAGCATTCAAAACCAGTCTTTAGTATACCCTGATTATTATTTGAATCCATTTCATGCATATGATGAAGGGAATCTTACATGGCTGGCAGCAGCAGAAGCCGAGGCTGCTACTAAGTCAATGGCAAGACGAGCGATTCCTACCGCTTCATCAGTAGAAGAAGCGACGCAGATAATGCGTGACAATTGGCTTAATGCAATTGAACAACATCATCTACAGCATTCACAAACATCTATGATTGGTGACATTCTAGACATTGGATGTTCTGTGGGAGTAAGCTCAAGATTTCTTGCGGACAAGTTCCCTACGGCCAATGTCATTGGGCTAGATATGTCACCCTATTTTCTAGCTGTGGCTCAGCATAAGGAAAAGAGCGGAACGCCTAGAAAAAATCCTATAAAATGGATACATGCAAATGGGGAAGACACGGGCTTGCCTTCTAAATCATTTGATCTTGTGTCTATTTCTTATGTGTTTCATGAATGTCCTGCAAGAGCCATAGTGAATGTAGTAAAGGAAGCATTCCGTCTCCTTCGGCCTGGAGGCACGTTTGCTATGACAGATAATTCGCCAAAGTCAAAGGTCCTACAGGAGTTGTCTCCTGTCCTGTTTACATTGATGAAGAGCACAGAACCCTTTCTTGACGAGTACTACTTGACTGATATGGACCAAACACTGAAGGAAGCTGGTTTCGTGAACATAAAATCAATTCTTACCAACCCTAGGCACGTGACTTTAACGGCTACTGTGCCTCAATGA

Protein sequence

>Msa0608720

MALSSQLQNLSSLISPHGITTTTTKAPTRRHVVVHAAASDTTTSLQASSYEEGKLVRPKWTGETPLSRMVRALISFKPLYSILKLGARQVLISTAEKNNIPWREMTKEILESEVYKELDSIQNQSLVYPDYYLNPFHAYDEGNLTWLAAAEAEAATKSMARRAIPTASSVEEATQIMRDNWLNAIEQHHLQHSQTSMIGDILDIGCSVGVSSRFLADKFPTANVIGLDMSPYFLAVAQHKEKSGTPRKNPIKWIHANGEDTGLPSKSFDLVSISYVFHECPARAIVNVVKEAFRLLRPGGTFAMTDNSPKSKVLQELSPVLFTLMKSTEPFLDEYYLTDMDQTLKEAGFVNIKSILTNPRHVTLTATVPQ*