AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0439090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0439090 MtrunA17_Chr7g0215351 94.152 171 10 0 11 181 11 181 4.71e-124 347
Msa0439090 MtrunA17_Chr7g0215381 93.567 171 11 0 11 181 11 181 9.09e-124 346
Msa0439090 MtrunA17_Chr7g0215421 94.152 171 10 0 11 181 11 181 9.19e-124 346
Msa0439090 MtrunA17_Chr7g0215361 94.118 170 10 0 12 181 12 181 2.07e-123 345
Msa0439090 MtrunA17_Chr7g0215431 93.529 170 11 0 12 181 12 181 3.44e-122 342
Msa0439090 MtrunA17_Chr6g0457471 84.358 179 27 1 4 181 2 180 7.05e-114 321
Msa0439090 MtrunA17_Chr6g0457461 83.799 179 25 2 4 181 2 177 2.80e-111 314
Msa0439090 MtrunA17_Chr4g0072241 48.810 168 81 4 17 180 3 169 7.15e-58 179
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0439090 AT1G67090.1 70.879 182 48 2 1 181 1 178 5.19e-93 268
Msa0439090 AT5G38430.1 70.330 182 49 2 1 181 1 178 4.50e-92 266
Msa0439090 AT5G38430.2 70.330 182 49 2 1 181 1 178 4.50e-92 266
Msa0439090 AT5G38410.1 69.780 182 50 2 1 181 1 178 9.80e-92 265
Msa0439090 AT5G38420.1 69.780 182 50 2 1 181 1 178 2.81e-91 264
Msa0439090 AT5G38410.3 67.914 187 50 3 1 181 1 183 1.79e-89 260
Msa0439090 AT5G38410.2 67.033 182 48 3 1 181 1 171 6.76e-85 248
Msa0439090 AT1G67090.2 64.348 115 36 2 1 114 1 111 8.01e-45 145

Find 63 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCTTAATATTGTGGTAAT+TGG 0.181671 3_3:-4631513 None:intergenic
AAGAAGTTGATTACCTTATA+AGG 0.244592 3_3:+4632062 Msa0439090:CDS
AAATCTAACAAGTTGGTATT+AGG 0.269347 3_3:+4631484 None:intergenic
CAACCCATCCCTTCCTTATA+AGG 0.273690 3_3:-4632075 None:intergenic
CTAAAACTTGCTATATATAA+TGG 0.294582 3_3:-4631571 None:intergenic
GGTAAAGATGAGAATGAATT+AGG 0.306324 3_3:-4632751 None:intergenic
TCTTTGTTGATCTTTGTAAC+TGG 0.311725 3_3:-4631760 None:intergenic
TTTCTTTAATATCATACTAT+TGG 0.318252 3_3:-4632711 None:intergenic
CAATATTAAGACCATAATAT+TGG 0.334349 3_3:+4631523 Msa0439090:five_prime_UTR
GAAGGGATGGGTTGCTTGCT+TGG 0.368783 3_3:+4632084 Msa0439090:CDS
GATACTATGATGGACGTTAC+TGG 0.371866 3_3:+4632285 Msa0439090:CDS
CGATTCTTCTCAAGTGTTGA+AGG 0.396980 3_3:+4632340 Msa0439090:CDS
ACCATTGACCAGAGAACAAT+TGG 0.397843 3_3:+4632036 Msa0439090:CDS
ATGTGGAAGTTGCCTTTGTT+TGG 0.411503 3_3:+4632311 Msa0439090:CDS
GCCAATTGTTCTCTGGTCAA+TGG 0.416317 3_3:-4632037 None:intergenic
GATTTCGAAATGCAAATGTA+TGG 0.417795 3_3:+4632583 Msa0439090:three_prime_UTR
TCTTCCACCATTGCTTGTAA+TGG 0.422658 3_3:-4631791 None:intergenic
TACAGTTAACCGTGCCTCTT+CGG 0.432912 3_3:+4631684 Msa0439090:CDS
TCAAACTTCTTCTTGCCAAT+AGG 0.435806 3_3:-4631995 None:intergenic
ATGATACGGACAAAGGCATC+AGG 0.443523 3_3:-4632389 None:intergenic
TTCAAGTTCAAGCCATTACA+AGG 0.460492 3_3:-4632669 None:intergenic
CTTCAACACTTGAGAAGAAT+CGG 0.461194 3_3:-4632339 None:intergenic
GGCGCGGCGGCTCCATTCGT+TGG 0.461846 3_3:+4631715 Msa0439090:CDS
TAATCACTCTCTGCTGCCAT+TGG 0.470602 3_3:+4632491 Msa0439090:three_prime_UTR
GATGCCTTTGTCCGTATCAT+CGG 0.484184 3_3:+4632392 Msa0439090:CDS
CTTTGTTGATCTTTGTAACT+GGG 0.495423 3_3:-4631759 None:intergenic
CTCAAAATTTAGTAGACTGC+AGG 0.495678 3_3:-4632464 None:intergenic
ATTACCTTATAAGGAAGGGA+TGG 0.507588 3_3:+4632071 Msa0439090:CDS
AACTTCTTCTTGCCAATAGG+AGG 0.515017 3_3:-4631992 None:intergenic
AGTTGATTACCTTATAAGGA+AGG 0.522099 3_3:+4632066 Msa0439090:CDS
CGTGCCTCTTCGGTACAATC+CGG 0.524408 3_3:+4631694 Msa0439090:CDS
AACGAATGGAGCCGCCGCGC+CGG 0.525589 3_3:-4631713 None:intergenic
ATATTATGGTCTTAATATTG+TGG 0.527737 3_3:-4631520 None:intergenic
ATTACTTCCATTACAAGCAA+TGG 0.539617 3_3:+4631784 Msa0439090:CDS
CATAGTATCCTGGTGACTTG+TGG 0.542155 3_3:-4632271 None:intergenic
CGTGAGAACCACAAGTCACC+AGG 0.544938 3_3:+4632263 Msa0439090:CDS
GTTGGACTAAAGTCCATGGC+TGG 0.555609 3_3:+4631733 Msa0439090:CDS
TTACCTTATAAGGAAGGGAT+GGG 0.559428 3_3:+4632072 Msa0439090:CDS
AGCTGAAGAGGACATGATAG+AGG 0.561007 3_3:-4631656 None:intergenic
CTTGAAACTTTAAATAACAA+AGG 0.567264 3_3:+4632686 Msa0439090:three_prime_UTR
GTTGATTACCTTATAAGGAA+GGG 0.567383 3_3:+4632067 Msa0439090:CDS
TAACGTCCATCATAGTATCC+TGG 0.569613 3_3:-4632281 None:intergenic
AAGTCACCAGGATACTATGA+TGG 0.574009 3_3:+4632275 Msa0439090:CDS
CGTTGTCGAATCCGATGATA+CGG 0.579522 3_3:-4632403 None:intergenic
CTGGTGACTTGTGGTTCTCA+CGG 0.595328 3_3:-4632262 None:intergenic
AACTGTAGTCACAGCTGAAG+AGG 0.597051 3_3:-4631668 None:intergenic
GAATCGGTTGCTCCAAACAA+AGG 0.598394 3_3:-4632323 None:intergenic
AAAGATGAGAATGAATTAGG+TGG 0.603747 3_3:-4632748 None:intergenic
ATTCGTTGGACTAAAGTCCA+TGG 0.609669 3_3:+4631729 Msa0439090:CDS
ACTTCCATTACAAGCAATGG+TGG 0.610706 3_3:+4631787 Msa0439090:CDS
TTGCTTGGAATTTGAGACCG+AGG 0.613015 3_3:+4632099 Msa0439090:CDS
TGTAACTGGGAAGCCAGCCA+TGG 0.615947 3_3:-4631746 None:intergenic
GTTCTCTGGTCAATGGTGGA+AGG 0.618328 3_3:-4632030 None:intergenic
ATGGACTTTAGTCCAACGAA+TGG 0.623442 3_3:-4631727 None:intergenic
AATTGTTCTCTGGTCAATGG+TGG 0.637841 3_3:-4632034 None:intergenic
CGGATTGTACCGAAGAGGCA+CGG 0.641462 3_3:-4631693 None:intergenic
TGGAAGAGTAAACTGCATGC+AGG 0.652563 3_3:+4631807 Msa0439090:CDS
CGCGCCGGATTGTACCGAAG+AGG 0.655843 3_3:-4631698 None:intergenic
TGATACGGACAAAGGCATCA+GGG 0.656050 3_3:-4632388 None:intergenic
TTCGGTACAATCCGGCGCGG+CGG 0.679004 3_3:+4631702 Msa0439090:CDS
GAATCCGATGATACGGACAA+AGG 0.687909 3_3:-4632396 None:intergenic
CTCTTCGGTACAATCCGGCG+CGG 0.688447 3_3:+4631699 Msa0439090:CDS
ATGGACGTTACTGGACAATG+TGG 0.742197 3_3:+4632294 Msa0439090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTATTTCCAATATTA+TGG - chr3_3:4631537-4631556 None:intergenic 15.0%
!! TTTCTTTAATATCATACTAT+TGG - chr3_3:4632714-4632733 None:intergenic 15.0%
!!! TTTTTCTATTTCCAATATTA+TGG - chr3_3:4631537-4631556 None:intergenic 15.0%
!! TTTCTTTAATATCATACTAT+TGG - chr3_3:4632714-4632733 None:intergenic 15.0%
!!! ATATTATGGTCTTAATATTG+TGG - chr3_3:4631523-4631542 None:intergenic 20.0%
!! CAATATTAAGACCATAATAT+TGG + chr3_3:4631523-4631542 Msa0439090:five_prime_UTR 20.0%
!!! CTAAAACTTGCTATATATAA+TGG - chr3_3:4631574-4631593 None:intergenic 20.0%
!! CTTGAAACTTTAAATAACAA+AGG + chr3_3:4632686-4632705 Msa0439090:three_prime_UTR 20.0%
!!! ATATTATGGTCTTAATATTG+TGG - chr3_3:4631523-4631542 None:intergenic 20.0%
!! CAATATTAAGACCATAATAT+TGG + chr3_3:4631523-4631542 Msa0439090:five_prime_UTR 20.0%
!!! CTAAAACTTGCTATATATAA+TGG - chr3_3:4631574-4631593 None:intergenic 20.0%
!! CTTGAAACTTTAAATAACAA+AGG + chr3_3:4632686-4632705 Msa0439090:three_prime_UTR 20.0%
! CTTGTGAACTAAGAAAAAAA+TGG + chr3_3:4631630-4631649 Msa0439090:exon 25.0%
!! TATATTTTCATAAGCTCTTC+AGG + chr3_3:4631871-4631890 Msa0439090:intron 25.0%
! ATAAGCACTTATAGATTCAT+TGG + chr3_3:4631922-4631941 Msa0439090:intron 25.0%
!! AAGAAGTTGATTACCTTATA+AGG + chr3_3:4632062-4632081 Msa0439090:CDS 25.0%
! AGTAAAGTAATATTAGACCT+CGG - chr3_3:4632119-4632138 None:intergenic 25.0%
!!! TGTTTGTTTTGATTTGTACT+TGG + chr3_3:4632215-4632234 Msa0439090:intron 25.0%
! AGAAAAAAATGTTCTTCCAA+TGG - chr3_3:4632510-4632529 None:intergenic 25.0%
!!! TTATGTCTTCCTTTGTTTTT+TGG + chr3_3:4632548-4632567 Msa0439090:three_prime_UTR 25.0%
! CTTGTGAACTAAGAAAAAAA+TGG + chr3_3:4631630-4631649 Msa0439090:exon 25.0%
!! TATATTTTCATAAGCTCTTC+AGG + chr3_3:4631871-4631890 Msa0439090:intron 25.0%
! ATAAGCACTTATAGATTCAT+TGG + chr3_3:4631922-4631941 Msa0439090:intron 25.0%
!! AAGAAGTTGATTACCTTATA+AGG + chr3_3:4632062-4632081 Msa0439090:CDS 25.0%
! AGTAAAGTAATATTAGACCT+CGG - chr3_3:4632119-4632138 None:intergenic 25.0%
!!! TGTTTGTTTTGATTTGTACT+TGG + chr3_3:4632215-4632234 Msa0439090:intron 25.0%
! AGAAAAAAATGTTCTTCCAA+TGG - chr3_3:4632510-4632529 None:intergenic 25.0%
!!! TTATGTCTTCCTTTGTTTTT+TGG + chr3_3:4632548-4632567 Msa0439090:three_prime_UTR 25.0%
GGTCTTAATATTGTGGTAAT+TGG - chr3_3:4631516-4631535 None:intergenic 30.0%
CTTTGTTGATCTTTGTAACT+GGG - chr3_3:4631762-4631781 None:intergenic 30.0%
TCTTTGTTGATCTTTGTAAC+TGG - chr3_3:4631763-4631782 None:intergenic 30.0%
ATTACTTCCATTACAAGCAA+TGG + chr3_3:4631784-4631803 Msa0439090:CDS 30.0%
!!! ACAAGTTTGTTAACCCTTTT+GGG + chr3_3:4631954-4631973 Msa0439090:intron 30.0%
AGTTGATTACCTTATAAGGA+AGG + chr3_3:4632066-4632085 Msa0439090:CDS 30.0%
GTTGATTACCTTATAAGGAA+GGG + chr3_3:4632067-4632086 Msa0439090:CDS 30.0%
AAGCGAAAACCAAAAAACAA+AGG - chr3_3:4632560-4632579 None:intergenic 30.0%
!!! TGTTTTTTGGTTTTCGCTTT+CGG + chr3_3:4632561-4632580 Msa0439090:three_prime_UTR 30.0%
GATTTCGAAATGCAAATGTA+TGG + chr3_3:4632583-4632602 Msa0439090:three_prime_UTR 30.0%
!!! ATATGCTGTTTTCCTTGTAA+TGG + chr3_3:4632657-4632676 Msa0439090:three_prime_UTR 30.0%
AAAGATGAGAATGAATTAGG+TGG - chr3_3:4632751-4632770 None:intergenic 30.0%
GGTAAAGATGAGAATGAATT+AGG - chr3_3:4632754-4632773 None:intergenic 30.0%
GGTCTTAATATTGTGGTAAT+TGG - chr3_3:4631516-4631535 None:intergenic 30.0%
CTTTGTTGATCTTTGTAACT+GGG - chr3_3:4631762-4631781 None:intergenic 30.0%
TCTTTGTTGATCTTTGTAAC+TGG - chr3_3:4631763-4631782 None:intergenic 30.0%
ATTACTTCCATTACAAGCAA+TGG + chr3_3:4631784-4631803 Msa0439090:CDS 30.0%
!!! ACAAGTTTGTTAACCCTTTT+GGG + chr3_3:4631954-4631973 Msa0439090:intron 30.0%
AGTTGATTACCTTATAAGGA+AGG + chr3_3:4632066-4632085 Msa0439090:CDS 30.0%
GTTGATTACCTTATAAGGAA+GGG + chr3_3:4632067-4632086 Msa0439090:CDS 30.0%
AAGCGAAAACCAAAAAACAA+AGG - chr3_3:4632560-4632579 None:intergenic 30.0%
!!! TGTTTTTTGGTTTTCGCTTT+CGG + chr3_3:4632561-4632580 Msa0439090:three_prime_UTR 30.0%
GATTTCGAAATGCAAATGTA+TGG + chr3_3:4632583-4632602 Msa0439090:three_prime_UTR 30.0%
!!! ATATGCTGTTTTCCTTGTAA+TGG + chr3_3:4632657-4632676 Msa0439090:three_prime_UTR 30.0%
AAAGATGAGAATGAATTAGG+TGG - chr3_3:4632751-4632770 None:intergenic 30.0%
GGTAAAGATGAGAATGAATT+AGG - chr3_3:4632754-4632773 None:intergenic 30.0%
!!! CACAAGTTTGTTAACCCTTT+TGG + chr3_3:4631953-4631972 Msa0439090:intron 35.0%
! TAACCCTTTTGGGCAATTTT+AGG + chr3_3:4631964-4631983 Msa0439090:intron 35.0%
ACACCTAAAATTGCCCAAAA+GGG - chr3_3:4631970-4631989 None:intergenic 35.0%
TCAAACTTCTTCTTGCCAAT+AGG - chr3_3:4631998-4632017 None:intergenic 35.0%
! TTCTTTTGCCAATTGTTCTC+TGG - chr3_3:4632047-4632066 None:intergenic 35.0%
ATTACCTTATAAGGAAGGGA+TGG + chr3_3:4632071-4632090 Msa0439090:CDS 35.0%
TTACCTTATAAGGAAGGGAT+GGG + chr3_3:4632072-4632091 Msa0439090:CDS 35.0%
CTTCAACACTTGAGAAGAAT+CGG - chr3_3:4632342-4632361 None:intergenic 35.0%
CTCAAAATTTAGTAGACTGC+AGG - chr3_3:4632467-4632486 None:intergenic 35.0%
! TTCAAGTTCAAGCCATTACA+AGG - chr3_3:4632672-4632691 None:intergenic 35.0%
!!! CACAAGTTTGTTAACCCTTT+TGG + chr3_3:4631953-4631972 Msa0439090:intron 35.0%
! TAACCCTTTTGGGCAATTTT+AGG + chr3_3:4631964-4631983 Msa0439090:intron 35.0%
ACACCTAAAATTGCCCAAAA+GGG - chr3_3:4631970-4631989 None:intergenic 35.0%
TCAAACTTCTTCTTGCCAAT+AGG - chr3_3:4631998-4632017 None:intergenic 35.0%
! TTCTTTTGCCAATTGTTCTC+TGG - chr3_3:4632047-4632066 None:intergenic 35.0%
ATTACCTTATAAGGAAGGGA+TGG + chr3_3:4632071-4632090 Msa0439090:CDS 35.0%
TTACCTTATAAGGAAGGGAT+GGG + chr3_3:4632072-4632091 Msa0439090:CDS 35.0%
CTTCAACACTTGAGAAGAAT+CGG - chr3_3:4632342-4632361 None:intergenic 35.0%
CTCAAAATTTAGTAGACTGC+AGG - chr3_3:4632467-4632486 None:intergenic 35.0%
! TTCAAGTTCAAGCCATTACA+AGG - chr3_3:4632672-4632691 None:intergenic 35.0%
ATGGACTTTAGTCCAACGAA+TGG - chr3_3:4631730-4631749 None:intergenic 40.0%
ATTCGTTGGACTAAAGTCCA+TGG + chr3_3:4631729-4631748 Msa0439090:CDS 40.0%
ACTTCCATTACAAGCAATGG+TGG + chr3_3:4631787-4631806 Msa0439090:CDS 40.0%
TCTTCCACCATTGCTTGTAA+TGG - chr3_3:4631794-4631813 None:intergenic 40.0%
CACACCTAAAATTGCCCAAA+AGG - chr3_3:4631971-4631990 None:intergenic 40.0%
!! CTTTTGGGCAATTTTAGGTG+TGG + chr3_3:4631969-4631988 Msa0439090:intron 40.0%
AACTTCTTCTTGCCAATAGG+AGG - chr3_3:4631995-4632014 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG - chr3_3:4632037-4632056 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG + chr3_3:4632036-4632055 Msa0439090:CDS 40.0%
CAAATTTGTGACTGTGACCT+TGG - chr3_3:4632184-4632203 None:intergenic 40.0%
GTACTTGGTTACTTGCAGAA+AGG + chr3_3:4632230-4632249 Msa0439090:intron 40.0%
AAGTCACCAGGATACTATGA+TGG + chr3_3:4632275-4632294 Msa0439090:CDS 40.0%
TAACGTCCATCATAGTATCC+TGG - chr3_3:4632284-4632303 None:intergenic 40.0%
!! GATACTATGATGGACGTTAC+TGG + chr3_3:4632285-4632304 Msa0439090:CDS 40.0%
ATGTGGAAGTTGCCTTTGTT+TGG + chr3_3:4632311-4632330 Msa0439090:CDS 40.0%
!! CGATTCTTCTCAAGTGTTGA+AGG + chr3_3:4632340-4632359 Msa0439090:CDS 40.0%
ATGGACTTTAGTCCAACGAA+TGG - chr3_3:4631730-4631749 None:intergenic 40.0%
ATTCGTTGGACTAAAGTCCA+TGG + chr3_3:4631729-4631748 Msa0439090:CDS 40.0%
ACTTCCATTACAAGCAATGG+TGG + chr3_3:4631787-4631806 Msa0439090:CDS 40.0%
TCTTCCACCATTGCTTGTAA+TGG - chr3_3:4631794-4631813 None:intergenic 40.0%
CACACCTAAAATTGCCCAAA+AGG - chr3_3:4631971-4631990 None:intergenic 40.0%
!! CTTTTGGGCAATTTTAGGTG+TGG + chr3_3:4631969-4631988 Msa0439090:intron 40.0%
AACTTCTTCTTGCCAATAGG+AGG - chr3_3:4631995-4632014 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG - chr3_3:4632037-4632056 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG + chr3_3:4632036-4632055 Msa0439090:CDS 40.0%
CAAATTTGTGACTGTGACCT+TGG - chr3_3:4632184-4632203 None:intergenic 40.0%
GTACTTGGTTACTTGCAGAA+AGG + chr3_3:4632230-4632249 Msa0439090:intron 40.0%
AAGTCACCAGGATACTATGA+TGG + chr3_3:4632275-4632294 Msa0439090:CDS 40.0%
TAACGTCCATCATAGTATCC+TGG - chr3_3:4632284-4632303 None:intergenic 40.0%
!! GATACTATGATGGACGTTAC+TGG + chr3_3:4632285-4632304 Msa0439090:CDS 40.0%
ATGTGGAAGTTGCCTTTGTT+TGG + chr3_3:4632311-4632330 Msa0439090:CDS 40.0%
!! CGATTCTTCTCAAGTGTTGA+AGG + chr3_3:4632340-4632359 Msa0439090:CDS 40.0%
AGCTGAAGAGGACATGATAG+AGG - chr3_3:4631659-4631678 None:intergenic 45.0%
AACTGTAGTCACAGCTGAAG+AGG - chr3_3:4631671-4631690 None:intergenic 45.0%
TACAGTTAACCGTGCCTCTT+CGG + chr3_3:4631684-4631703 Msa0439090:CDS 45.0%
TGGAAGAGTAAACTGCATGC+AGG + chr3_3:4631807-4631826 Msa0439090:CDS 45.0%
!! TTTTAGGTGTGGCCTCCTAT+TGG + chr3_3:4631980-4631999 Msa0439090:intron 45.0%
GCCAATTGTTCTCTGGTCAA+TGG - chr3_3:4632040-4632059 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG - chr3_3:4632078-4632097 None:intergenic 45.0%
! TTGCTTGGAATTTGAGACCG+AGG + chr3_3:4632099-4632118 Msa0439090:CDS 45.0%
CATAGTATCCTGGTGACTTG+TGG - chr3_3:4632274-4632293 None:intergenic 45.0%
ATGGACGTTACTGGACAATG+TGG + chr3_3:4632294-4632313 Msa0439090:CDS 45.0%
GAATCGGTTGCTCCAAACAA+AGG - chr3_3:4632326-4632345 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG - chr3_3:4632391-4632410 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG - chr3_3:4632392-4632411 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG + chr3_3:4632392-4632411 Msa0439090:CDS 45.0%
GAATCCGATGATACGGACAA+AGG - chr3_3:4632399-4632418 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG - chr3_3:4632406-4632425 None:intergenic 45.0%
TAATCACTCTCTGCTGCCAT+TGG + chr3_3:4632491-4632510 Msa0439090:three_prime_UTR 45.0%
AGCTGAAGAGGACATGATAG+AGG - chr3_3:4631659-4631678 None:intergenic 45.0%
AACTGTAGTCACAGCTGAAG+AGG - chr3_3:4631671-4631690 None:intergenic 45.0%
TACAGTTAACCGTGCCTCTT+CGG + chr3_3:4631684-4631703 Msa0439090:CDS 45.0%
TGGAAGAGTAAACTGCATGC+AGG + chr3_3:4631807-4631826 Msa0439090:CDS 45.0%
!! TTTTAGGTGTGGCCTCCTAT+TGG + chr3_3:4631980-4631999 Msa0439090:intron 45.0%
GCCAATTGTTCTCTGGTCAA+TGG - chr3_3:4632040-4632059 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG - chr3_3:4632078-4632097 None:intergenic 45.0%
! TTGCTTGGAATTTGAGACCG+AGG + chr3_3:4632099-4632118 Msa0439090:CDS 45.0%
CATAGTATCCTGGTGACTTG+TGG - chr3_3:4632274-4632293 None:intergenic 45.0%
ATGGACGTTACTGGACAATG+TGG + chr3_3:4632294-4632313 Msa0439090:CDS 45.0%
GAATCGGTTGCTCCAAACAA+AGG - chr3_3:4632326-4632345 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG - chr3_3:4632391-4632410 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG - chr3_3:4632392-4632411 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG + chr3_3:4632392-4632411 Msa0439090:CDS 45.0%
GAATCCGATGATACGGACAA+AGG - chr3_3:4632399-4632418 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG - chr3_3:4632406-4632425 None:intergenic 45.0%
TAATCACTCTCTGCTGCCAT+TGG + chr3_3:4632491-4632510 Msa0439090:three_prime_UTR 45.0%
GTTGGACTAAAGTCCATGGC+TGG + chr3_3:4631733-4631752 Msa0439090:CDS 50.0%
! GTTCTCTGGTCAATGGTGGA+AGG - chr3_3:4632033-4632052 None:intergenic 50.0%
!! TCGTTGTTTTGTCGCGACCA+AGG + chr3_3:4632164-4632183 Msa0439090:intron 50.0%
! CTGGTGACTTGTGGTTCTCA+CGG - chr3_3:4632265-4632284 None:intergenic 50.0%
GTTGGACTAAAGTCCATGGC+TGG + chr3_3:4631733-4631752 Msa0439090:CDS 50.0%
! GTTCTCTGGTCAATGGTGGA+AGG - chr3_3:4632033-4632052 None:intergenic 50.0%
!! TCGTTGTTTTGTCGCGACCA+AGG + chr3_3:4632164-4632183 Msa0439090:intron 50.0%
! CTGGTGACTTGTGGTTCTCA+CGG - chr3_3:4632265-4632284 None:intergenic 50.0%
CGGATTGTACCGAAGAGGCA+CGG - chr3_3:4631696-4631715 None:intergenic 55.0%
CGTGCCTCTTCGGTACAATC+CGG + chr3_3:4631694-4631713 Msa0439090:CDS 55.0%
TGTAACTGGGAAGCCAGCCA+TGG - chr3_3:4631749-4631768 None:intergenic 55.0%
!! GAAGGGATGGGTTGCTTGCT+TGG + chr3_3:4632084-4632103 Msa0439090:CDS 55.0%
CGTGAGAACCACAAGTCACC+AGG + chr3_3:4632263-4632282 Msa0439090:CDS 55.0%
CGGATTGTACCGAAGAGGCA+CGG - chr3_3:4631696-4631715 None:intergenic 55.0%
CGTGCCTCTTCGGTACAATC+CGG + chr3_3:4631694-4631713 Msa0439090:CDS 55.0%
TGTAACTGGGAAGCCAGCCA+TGG - chr3_3:4631749-4631768 None:intergenic 55.0%
!! GAAGGGATGGGTTGCTTGCT+TGG + chr3_3:4632084-4632103 Msa0439090:CDS 55.0%
CGTGAGAACCACAAGTCACC+AGG + chr3_3:4632263-4632282 Msa0439090:CDS 55.0%
CTCTTCGGTACAATCCGGCG+CGG + chr3_3:4631699-4631718 Msa0439090:CDS 60.0%
CTCTTCGGTACAATCCGGCG+CGG + chr3_3:4631699-4631718 Msa0439090:CDS 60.0%
CGCGCCGGATTGTACCGAAG+AGG - chr3_3:4631701-4631720 None:intergenic 65.0%
TTCGGTACAATCCGGCGCGG+CGG + chr3_3:4631702-4631721 Msa0439090:CDS 65.0%
CGCGCCGGATTGTACCGAAG+AGG - chr3_3:4631701-4631720 None:intergenic 65.0%
TTCGGTACAATCCGGCGCGG+CGG + chr3_3:4631702-4631721 Msa0439090:CDS 65.0%
AACGAATGGAGCCGCCGCGC+CGG - chr3_3:4631716-4631735 None:intergenic 70.0%
AACGAATGGAGCCGCCGCGC+CGG - chr3_3:4631716-4631735 None:intergenic 70.0%
GGCGCGGCGGCTCCATTCGT+TGG + chr3_3:4631715-4631734 Msa0439090:CDS 75.0%
GGCGCGGCGGCTCCATTCGT+TGG + chr3_3:4631715-4631734 Msa0439090:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 4631486 4632775 4631486 ID=Msa0439090;Name=Msa0439090
chr3_3 mRNA 4631486 4632775 4631486 ID=Msa0439090-mRNA-1;Parent=Msa0439090;Name=Msa0439090-mRNA-1;_AED=0.39;_eAED=0.39;_QI=163|1|1|1|1|1|3|297|181
chr3_3 exon 4631486 4631828 4631486 ID=Msa0439090-mRNA-1:exon:994;Parent=Msa0439090-mRNA-1
chr3_3 exon 4631986 4632120 4631986 ID=Msa0439090-mRNA-1:exon:995;Parent=Msa0439090-mRNA-1
chr3_3 exon 4632248 4632775 4632248 ID=Msa0439090-mRNA-1:exon:996;Parent=Msa0439090-mRNA-1
chr3_3 five_prime_UTR 4631486 4631648 4631486 ID=Msa0439090-mRNA-1:five_prime_utr;Parent=Msa0439090-mRNA-1
chr3_3 CDS 4631649 4631828 4631649 ID=Msa0439090-mRNA-1:cds;Parent=Msa0439090-mRNA-1
chr3_3 CDS 4631986 4632120 4631986 ID=Msa0439090-mRNA-1:cds;Parent=Msa0439090-mRNA-1
chr3_3 CDS 4632248 4632478 4632248 ID=Msa0439090-mRNA-1:cds;Parent=Msa0439090-mRNA-1
chr3_3 three_prime_UTR 4632479 4632775 4632479 ID=Msa0439090-mRNA-1:three_prime_utr;Parent=Msa0439090-mRNA-1
Gene Sequence

>Msa0439090

ATGGCTTCCTCTATCATGTCCTCTTCAGCTGTGACTACAGTTAACCGTGCCTCTTCGGTACAATCCGGCGCGGCGGCTCCATTCGTTGGACTAAAGTCCATGGCTGGCTTCCCAGTTACAAAGATCAACAAAGACATTACTTCCATTACAAGCAATGGTGGAAGAGTAAACTGCATGCAGGTGTGGCCTCCTATTGGCAAGAAGAAGTTTGAGACTCTTTCATACCTTCCACCATTGACCAGAGAACAATTGGCAAAAGAAGTTGATTACCTTATAAGGAAGGGATGGGTTGCTTGCTTGGAATTTGAGACCGAGAAAGGATTTGTGTACCGTGAGAACCACAAGTCACCAGGATACTATGATGGACGTTACTGGACAATGTGGAAGTTGCCTTTGTTTGGAGCAACCGATTCTTCTCAAGTGTTGAAGGAGCTTGATGAAGCTATTGCTGCTTACCCTGATGCCTTTGTCCGTATCATCGGATTCGACAACGTTCGTCAAGTTCAATGCATCAGTTTCATTGCACACACACCTGCAGTCTACTAA

Protein sequence

>Msa0439090

MASSIMSSSAVTTVNRASSVQSGAAAPFVGLKSMAGFPVTKINKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQLAKEVDYLIRKGWVACLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPLFGATDSSQVLKELDEAIAAYPDAFVRIIGFDNVRQVQCISFIAHTPAVY*