AlfalfaGEDB | Msa1372460

M. sativa cultivar zhongmu-4 / Msa1372460

KEGG: K08917
GO: GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363
PFAM: PF00504.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1372460	XP_003593177.1	99.617	261	1	0	1	261	1	261	0.0	514

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1372460	sp\|P27524\|CB4A_SOLLC	85.714	259	33	2	3	261	2	256	5.04e-155	434

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1372460	G7INT9	99.617	261	1	0	1	261	1	261	0.0	514

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1372460	0.800754	1.242432e-48	-8.615850e-47
Msa0000610	Msa1372460	0.843631	1.244403e-58	-8.615850e-47
Msa0000800	Msa1372460	-0.861843	7.716335e-64	-8.615850e-47
Msa0001040	Msa1372460	0.819478	1.137104e-52	-8.615850e-47
Msa0001510	Msa1372460	0.907587	4.311758e-81	-8.615850e-47
Msa0001540	Msa1372460	0.817529	3.146167e-52	-8.615850e-47
Msa0001550	Msa1372460	0.844276	8.358733e-59	-8.615850e-47
Msa0002110	Msa1372460	0.888373	6.253654e-73	-8.615850e-47
Msa0002690	Msa1372460	0.957495	2.366987e-115	-8.615850e-47
Msa0002700	Msa1372460	0.954750	1.460587e-112	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1372460	MtrunA17_Chr2g0279001	99.617	261	1	0	1	261	1	261	0.0	514
Msa1372460	MtrunA17_Chr3g0133901	42.523	214	96	6	42	249	43	235	4.02e-41	142
Msa1372460	MtrunA17_Chr2g0301081	45.745	188	69	5	73	249	72	237	2.34e-40	140
Msa1372460	MtrunA17_Chr8g0345631	38.835	206	97	5	49	248	55	237	1.39e-35	127
Msa1372460	MtrunA17_Chr3g0092091	36.471	255	117	9	12	259	17	233	1.67e-32	119
Msa1372460	MtrunA17_Chr3g0113311	32.800	250	78	7	60	257	60	271	2.43e-29	112
Msa1372460	MtrunA17_Chr4g0006181	33.591	259	82	7	51	257	106	326	2.59e-29	113
Msa1372460	MtrunA17_Chr5g0448421	35.567	194	91	8	75	249	69	247	4.07e-25	100
Msa1372460	MtrunA17_Chr5g0448411	35.567	194	91	8	75	249	67	245	1.49e-24	99.0
Msa1372460	MtrunA17_Chr6g0462031	33.673	196	80	6	59	243	48	204	2.79e-21	89.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1372460	AT1G15820.1	82.375	261	43	1	1	261	1	258	2.94e-152	425
Msa1372460	AT1G45474.2	40.566	212	100	6	49	254	38	229	1.28e-37	133
Msa1372460	AT1G45474.1	40.566	212	100	6	49	254	38	229	1.28e-37	133
Msa1372460	AT1G19150.1	43.716	183	80	4	73	249	75	240	2.55e-37	132
Msa1372460	AT3G61470.1	38.140	215	104	5	40	248	35	226	1.34e-35	128
Msa1372460	AT3G47470.1	34.263	251	119	9	17	259	22	234	1.32e-29	112
Msa1372460	AT5G01530.1	34.538	249	73	8	60	256	58	268	5.26e-29	111
Msa1372460	AT3G08940.2	32.721	272	90	9	38	257	36	266	2.25e-28	109
Msa1372460	AT3G54890.1	36.916	214	83	7	59	259	47	221	4.82e-26	102
Msa1372460	AT1G61520.3	33.766	231	117	9	39	248	27	242	2.53e-25	101

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Find 125 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATAGAAAGAGCACAG+TGG	0.743548	tig0019276:-170226	Msa1372460:five_prime_UTR
AAACAAATGTAAAGATAAAT+TGG	0.228865	tig0019276:-168666	Msa1372460:three_prime_UTR
AACATGAATTAAATTTGTCA+TGG	0.501644	tig0019276:+168832	None:intergenic
AACCTTTGTCATAAGCAAGA+AGG	0.557195	tig0019276:-168691	Msa1372460:three_prime_UTR
AAGACTCCCCTTGGTGCTCT+TGG	0.346873	tig0019276:-168939	Msa1372460:CDS
AAGCTGAGCTTATTCATGGA+AGG	0.607522	tig0019276:-169388	Msa1372460:CDS
AATAGCAGTAGTAGCTAACA+AGG	0.598050	tig0019276:+169858	None:intergenic
AATCTAAACAAGAAATCTTA+AGG	0.438847	tig0019276:+170114	None:intergenic
ACATCTGGTGCTGTGTTGAA+TGG	0.470993	tig0019276:-169922	Msa1372460:CDS
ACCAGCTGCAACACCACCTT+TGG	0.430059	tig0019276:+169831	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAATCTTAAGGTATATCG+TGG	+	tig0019276:168743-168762	None:intergenic	30.0%
TTAGATTTCATTGTCCTACA+TGG	-	tig0019276:168766-168785	Msa1372460:three_prime_UTR	30.0%
AGTAATAGTCTAATAGAGAC+TGG	+	tig0019276:168875-168894	None:intergenic	30.0%
AATTTAAGTAAACGTGTGGA+AGG	+	tig0019276:169257-169276	None:intergenic	30.0%
CAGATATATAGGTAAATGCA+AGG	+	tig0019276:170113-170132	None:intergenic	30.0%
GTTAGACTTTGTATGCATAT+TGG	+	tig0019276:170156-170175	None:intergenic	30.0%
AGAAATCTTAAGGTATATCG+TGG	+	tig0019276:168743-168762	None:intergenic	30.0%
TTAGATTTCATTGTCCTACA+TGG	-	tig0019276:168766-168785	Msa1372460:three_prime_UTR	30.0%
AGTAATAGTCTAATAGAGAC+TGG	+	tig0019276:168875-168894	None:intergenic	30.0%
AATTTAAGTAAACGTGTGGA+AGG	+	tig0019276:169257-169276	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0019276	gene	168626	170260	168626	ID=Msa1372460;Name=Msa1372460
tig0019276	mRNA	168626	170260	168626	ID=Msa1372460-mRNA-1;Parent=Msa1372460;Name=Msa1372460-mRNA-1;_AED=0.00;_eAED=0.00;_QI=304\|1\|1\|1\|1\|1\|2\|306\|261
tig0019276	exon	168626	169481	168626	ID=Msa1372460-mRNA-1:exon:2719;Parent=Msa1372460-mRNA-1
tig0019276	exon	169721	170260	169721	ID=Msa1372460-mRNA-1:exon:2718;Parent=Msa1372460-mRNA-1
tig0019276	five_prime_UTR	169957	170260	169957	ID=Msa1372460-mRNA-1:five_prime_utr;Parent=Msa1372460-mRNA-1
tig0019276	CDS	169721	169956	169721	ID=Msa1372460-mRNA-1:cds;Parent=Msa1372460-mRNA-1
tig0019276	CDS	168932	169481	168932	ID=Msa1372460-mRNA-1:cds;Parent=Msa1372460-mRNA-1
tig0019276	three_prime_UTR	168626	168931	168626	ID=Msa1372460-mRNA-1:three_prime_utr;Parent=Msa1372460-mRNA-1

Gene Sequence

>Msa1372460

ATGGCAGCTGCAACATCTGGTGCTGTGTTGAATGGTTTGGGATCTTCCTTCTTATCTGGAGGTAAGAGGAGCCAAACCTTGTTAGCTACTACTGCTATTGGAGCCAAAGGTGGTGTTGCAGCTGGTAGTCCTAAAAGACTTATTGTTGCTGCTGCTGCTTCTGCACCAAAGAAGTCATGGATCCCTGGTGTTAGATTTGGTGGAAACCTCGTCGACCCAGAATGGCTCGATGGATCATTACCAGGTGACTTTGGTTTTGACCCACTAGGCCTTGGCAAGGACCCAGCATTTCTCAAATGGTACAGAGAAGCTGAGCTTATTCATGGAAGGTGGGCAATGGCTGCAGTTCTAGGCATCTTTGTTGGTCAGGCATGGAGTGGAGTTCCATGGTTTGAGGCTGGAGCTGACCCCAATGCAATTGCTCCATTCTCCTTTGGTACTCTTCTAGGCACTCAGTTGATTCTCATGGGGTGGGTAGAGAGCAAGAGATGGGTCGATTTCTTCAACCCGGATTCACAGTCAATCGAATGGGCCACTCCATGGTCAAAAACCGCCGAGAACTTTGCTAATGCAACCGGAGAACAAGGCTACCCAGGGGGAAAATTCTTCGACCCATTGTCCCTTGCTGGTACCATCGAAAACGGAGTTTACATTCCAGATACAGAGAAGCTAGAGAGATTGAAACTGGCTGAGATTAAGCATGCTAGGCTTGCTATGTTGGCTATGCTGATTTTCTACTTTGAAGCTGGACAAGGGAAGACTCCCCTTGGTGCTCTTGGCTTGTAA

Protein sequence

>Msa1372460

MAAATSGAVLNGLGSSFLSGGKRSQTLLATTAIGAKGGVAAGSPKRLIVAAAASAPKKSWIPGVRFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSIEWATPWSKTAENFANATGEQGYPGGKFFDPLSLAGTIENGVYIPDTEKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL*