AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1372460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1372460 MtrunA17_Chr2g0279001 99.617 261 1 0 1 261 1 261 0.0 514
Msa1372460 MtrunA17_Chr3g0133901 42.523 214 96 6 42 249 43 235 4.02e-41 142
Msa1372460 MtrunA17_Chr2g0301081 45.745 188 69 5 73 249 72 237 2.34e-40 140
Msa1372460 MtrunA17_Chr8g0345631 38.835 206 97 5 49 248 55 237 1.39e-35 127
Msa1372460 MtrunA17_Chr3g0092091 36.471 255 117 9 12 259 17 233 1.67e-32 119
Msa1372460 MtrunA17_Chr3g0113311 32.800 250 78 7 60 257 60 271 2.43e-29 112
Msa1372460 MtrunA17_Chr4g0006181 33.591 259 82 7 51 257 106 326 2.59e-29 113
Msa1372460 MtrunA17_Chr5g0448421 35.567 194 91 8 75 249 69 247 4.07e-25 100
Msa1372460 MtrunA17_Chr5g0448411 35.567 194 91 8 75 249 67 245 1.49e-24 99.0
Msa1372460 MtrunA17_Chr6g0462031 33.673 196 80 6 59 243 48 204 2.79e-21 89.7
Msa1372460 MtrunA17_Chr2g0318521 34.615 208 86 7 73 259 63 241 6.14e-21 89.0
Msa1372460 MtrunA17_Chr4g0051941 33.816 207 87 8 73 259 67 243 4.86e-18 81.3
Msa1372460 MtrunA17_Chr5g0447531 32.850 207 89 7 73 259 66 242 1.26e-17 80.1
Msa1372460 MtrunA17_Chr6g0453181 33.333 207 88 8 73 259 66 242 1.28e-17 80.1
Msa1372460 MtrunA17_Chr6g0453151 32.850 207 89 8 73 259 133 309 3.18e-17 79.7
Msa1372460 MtrunA17_Chr6g0453141 31.884 207 91 7 73 259 66 242 4.93e-17 78.6
Msa1372460 MtrunA17_Chr1g0157481 32.035 231 115 7 50 256 96 308 5.29e-17 79.3
Msa1372460 MtrunA17_Chr6g0453161 32.850 207 89 8 73 259 68 244 8.22e-17 79.7
Msa1372460 MtrunA17_Chr6g0453161 33.333 207 88 8 73 259 333 509 9.20e-17 79.3
Msa1372460 MtrunA17_Chr6g0476641 32.569 218 122 8 40 249 52 252 4.45e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1372460 AT1G15820.1 82.375 261 43 1 1 261 1 258 2.94e-152 425
Msa1372460 AT1G45474.2 40.566 212 100 6 49 254 38 229 1.28e-37 133
Msa1372460 AT1G45474.1 40.566 212 100 6 49 254 38 229 1.28e-37 133
Msa1372460 AT1G19150.1 43.716 183 80 4 73 249 75 240 2.55e-37 132
Msa1372460 AT3G61470.1 38.140 215 104 5 40 248 35 226 1.34e-35 128
Msa1372460 AT3G47470.1 34.263 251 119 9 17 259 22 234 1.32e-29 112
Msa1372460 AT5G01530.1 34.538 249 73 8 60 256 58 268 5.26e-29 111
Msa1372460 AT3G08940.2 32.721 272 90 9 38 257 36 266 2.25e-28 109
Msa1372460 AT3G54890.1 36.916 214 83 7 59 259 47 221 4.82e-26 102
Msa1372460 AT1G61520.3 33.766 231 117 9 39 248 27 242 2.53e-25 101
Msa1372460 AT1G61520.1 33.766 231 117 9 39 248 27 242 2.53e-25 101
Msa1372460 AT3G54890.4 35.979 189 71 6 59 236 47 196 1.36e-22 92.8
Msa1372460 AT5G54270.1 33.333 246 103 9 39 259 33 242 6.39e-22 92.0
Msa1372460 AT1G61520.2 34.392 189 90 8 79 248 14 187 1.13e-21 90.5
Msa1372460 AT2G34430.1 34.783 207 86 9 73 259 66 243 4.48e-18 81.6
Msa1372460 AT1G29920.1 34.300 207 87 9 73 259 67 244 4.69e-18 81.6
Msa1372460 AT1G29910.1 34.300 207 87 9 73 259 67 244 4.69e-18 81.6
Msa1372460 AT2G34420.1 34.783 207 86 9 73 259 65 242 4.69e-18 81.6
Msa1372460 AT1G29930.1 34.300 207 87 9 73 259 67 244 5.79e-18 81.3
Msa1372460 AT3G27690.1 30.385 260 123 10 26 259 16 243 6.25e-18 81.3
Msa1372460 AT3G27690.2 30.385 260 123 10 26 259 48 275 7.07e-18 81.6
Msa1372460 AT2G05100.1 32.850 207 89 8 73 259 66 242 2.90e-17 79.3
Msa1372460 AT2G05070.1 32.850 207 89 8 73 259 66 242 3.27e-17 79.3
Msa1372460 AT3G54890.3 54.667 75 28 1 59 133 47 115 7.62e-17 76.3
Msa1372460 AT2G05100.2 32.653 196 83 7 73 249 66 231 1.27e-16 78.6
Msa1372460 AT3G54890.2 54.667 75 28 1 59 133 47 115 2.02e-16 75.9
Msa1372460 AT4G10340.1 31.383 188 92 6 73 249 82 243 6.31e-15 73.2

Find 125 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATATCGTGGATAGATTT+TGG 0.159030 tig0019276:+170135 None:intergenic
TTCTCCTTTGGTACTCTTCT+AGG 0.198477 tig0019276:-169269 Msa1372460:CDS
GTTCTTTGTGACTTTGAAAA+AGG 0.201787 tig0019276:+168619 None:intergenic
TTGGGATCTTCCTTCTTATC+TGG 0.220925 tig0019276:-169898 Msa1372460:CDS
TACGATCCATCGAGCCATTC+TGG 0.222067 tig0019276:+169718 None:intergenic
AAACAAATGTAAAGATAAAT+TGG 0.228865 tig0019276:-168666 Msa1372460:three_prime_UTR
CTCTCTAGCTTCTCTGTATC+TGG 0.252195 tig0019276:+169041 None:intergenic
TTCGACCCATTGTCCCTTGC+TGG 0.300502 tig0019276:-169089 Msa1372460:CDS
CCTTCTTTGAAAACCCCTTC+AGG 0.303401 tig0019276:-170075 Msa1372460:five_prime_UTR
CATTCGATTGACTGTGAATC+CGG 0.308951 tig0019276:+169188 None:intergenic
ATTTCCATCCTAAGCTGATT+TGG 0.310470 tig0019276:+170173 None:intergenic
CCAGGGATCCATGACTTCTT+TGG 0.326294 tig0019276:+169769 None:intergenic
TGGGCAATGGCTGCAGTTCT+AGG 0.329531 tig0019276:-169365 Msa1372460:CDS
GTTAGACTTTGTATGCATAT+TGG 0.335078 tig0019276:+168711 None:intergenic
GATGGAAATCCATTTCCTAT+TGG 0.344286 tig0019276:-170159 Msa1372460:five_prime_UTR
AAGACTCCCCTTGGTGCTCT+TGG 0.346873 tig0019276:-168939 Msa1372460:CDS
TTGTTAGCTACTACTGCTAT+TGG 0.371726 tig0019276:-169856 Msa1372460:CDS
TCTAGGCATCTTTGTTGGTC+AGG 0.375207 tig0019276:-169348 Msa1372460:CDS
GCAATTGCTCCATTCTCCTT+TGG 0.375390 tig0019276:-169281 Msa1372460:CDS
GGTGCTGTGTTGAATGGTTT+GGG 0.386787 tig0019276:-169916 Msa1372460:CDS
AGAGAAGCTGAGCTTATTCA+TGG 0.388496 tig0019276:-169392 Msa1372460:CDS
TATGGATCAAACAGATATAT+AGG 0.394006 tig0019276:+168743 None:intergenic
CTGTACCATTTGAGAAATGC+TGG 0.410852 tig0019276:+169413 None:intergenic
TGGTGCTGTGTTGAATGGTT+TGG 0.411606 tig0019276:-169917 Msa1372460:CDS
TGGATCCCTGGTGTTAGATT+TGG 0.414159 tig0019276:-169757 Msa1372460:CDS
CCCTGGGTAGCCTTGTTCTC+CGG 0.423395 tig0019276:+169121 None:intergenic
TTTAATTCATGTTCTAATGT+TGG 0.424794 tig0019276:-168822 Msa1372460:three_prime_UTR
GAGAATGGAGCAATTGCATT+GGG 0.424903 tig0019276:+169287 None:intergenic
CCTTCTTATCTGGAGGTAAG+AGG 0.427547 tig0019276:-169888 Msa1372460:CDS
ACCAGCTGCAACACCACCTT+TGG 0.430059 tig0019276:+169831 None:intergenic
ACGATCCATCGAGCCATTCT+GGG 0.431920 tig0019276:+169719 None:intergenic
AGGCACTCAGTTGATTCTCA+TGG 0.436916 tig0019276:-169249 Msa1372460:CDS
AATCTAAACAAGAAATCTTA+AGG 0.438847 tig0019276:+170114 None:intergenic
GAAGCTAGAGAGATTGAAAC+TGG 0.439049 tig0019276:-169030 Msa1372460:CDS
TGTAGATTACCAGGTGACTT+TGG 0.442105 tig0019276:-169464 Msa1372460:intron
CTCAGTTGATTCTCATGGGG+TGG 0.444041 tig0019276:-169244 Msa1372460:CDS
CAAATGGCAGCTGCAACATC+TGG 0.450920 tig0019276:-169937 Msa1372460:CDS
GCAGTTCTAGGCATCTTTGT+TGG 0.454175 tig0019276:-169353 Msa1372460:CDS
GCATGCTAGGCTTGCTATGT+TGG 0.454270 tig0019276:-168997 Msa1372460:CDS
GGCACTCAGTTGATTCTCAT+GGG 0.454921 tig0019276:-169248 Msa1372460:CDS
GCATATTGGCTACACATGTA+TGG 0.459520 tig0019276:+168725 None:intergenic
GGAGTTCCATGGTTTGAGGC+TGG 0.459578 tig0019276:-169317 Msa1372460:CDS
CAGTAGTAGCTAACAAGGTT+TGG 0.464458 tig0019276:+169863 None:intergenic
GCATCTTTGTTGGTCAGGCA+TGG 0.465448 tig0019276:-169343 Msa1372460:CDS
ACATCTGGTGCTGTGTTGAA+TGG 0.470993 tig0019276:-169922 Msa1372460:CDS
ATCCCTGGTGTTAGATTTGG+TGG 0.473436 tig0019276:-169754 Msa1372460:CDS
TTAGATTTCATTGTCCTACA+TGG 0.477009 tig0019276:-170098 Msa1372460:five_prime_UTR
GAGAACTTTGCTAATGCAAC+CGG 0.479444 tig0019276:-169140 Msa1372460:CDS
GGTTGCATTAGCAAAGTTCT+CGG 0.480106 tig0019276:+169142 None:intergenic
GGTCCTTGCCAAGGCCTAGT+GGG 0.484093 tig0019276:+169435 None:intergenic
AGTGTAAAAGATAAGACAAA+TGG 0.491353 tig0019276:-169953 Msa1372460:exon
GGGTCCTTGCCAAGGCCTAG+TGG 0.496533 tig0019276:+169434 None:intergenic
AACATGAATTAAATTTGTCA+TGG 0.501644 tig0019276:+168832 None:intergenic
CCGGAGAACAAGGCTACCCA+GGG 0.503852 tig0019276:-169121 Msa1372460:CDS
AGGACCCAGCATTTCTCAAA+TGG 0.509475 tig0019276:-169418 Msa1372460:CDS
CTTGCTGGTACCATCGAAAA+CGG 0.510039 tig0019276:-169074 Msa1372460:CDS
AGAAGAGTACCAAAGGAGAA+TGG 0.511148 tig0019276:+169272 None:intergenic
CCTCTTACCTCCAGATAAGA+AGG 0.513918 tig0019276:+169888 None:intergenic
AGGCATGGAGTGGAGTTCCA+TGG 0.514110 tig0019276:-169328 Msa1372460:CDS
TTCTACTTTGAAGCTGGACA+AGG 0.520216 tig0019276:-168963 Msa1372460:CDS
ACCGGAGAACAAGGCTACCC+AGG 0.521424 tig0019276:-169122 Msa1372460:CDS
GTTGGAAGCCAAATCAGCTT+AGG 0.521590 tig0019276:-170181 Msa1372460:five_prime_UTR
TTTGTTGGTCAGGCATGGAG+TGG 0.524108 tig0019276:-169338 Msa1372460:CDS
CCAAAGAAGTCATGGATCCC+TGG 0.525917 tig0019276:-169769 Msa1372460:CDS
TGGCTGAGATTAAGCATGCT+AGG 0.527131 tig0019276:-169010 Msa1372460:CDS
ATTCGATTGACTGTGAATCC+GGG 0.527520 tig0019276:+169189 None:intergenic
TGGTACCAGCAAGGGACAAT+GGG 0.528256 tig0019276:+169084 None:intergenic
TGTCATGGAGTAGCACACTT+AGG 0.529326 tig0019276:+168847 None:intergenic
GCCAAAGGTGGTGTTGCAGC+TGG 0.535237 tig0019276:-169832 Msa1372460:CDS
GGATTCACAGTCAATCGAAT+GGG 0.537483 tig0019276:-169186 Msa1372460:CDS
GGATCTTCCTTCTTATCTGG+AGG 0.538000 tig0019276:-169895 Msa1372460:CDS
CTTCTGCACCAAAGAAGTCA+TGG 0.541838 tig0019276:-169777 Msa1372460:CDS
TACCTTCTTGCTTATGACAA+AGG 0.544227 tig0019276:+168689 None:intergenic
GGAGAATGGAGCAATTGCAT+TGG 0.544242 tig0019276:+169286 None:intergenic
CTGAGCTTATTCATGGAAGG+TGG 0.544781 tig0019276:-169385 Msa1372460:CDS
TCAGTTGATTCTCATGGGGT+GGG 0.544833 tig0019276:-169243 Msa1372460:CDS
AGTAATAGTCTAATAGAGAC+TGG 0.547120 tig0019276:+169992 None:intergenic
GAAACCTCGTCGACCCAGAA+TGG 0.547423 tig0019276:-169732 Msa1372460:CDS
GAGTGGAGTTCCATGGTTTG+AGG 0.550527 tig0019276:-169321 Msa1372460:CDS
TCAGCTCCAGCCTCAAACCA+TGG 0.554373 tig0019276:+169311 None:intergenic
ATGGTACCAGCAAGGGACAA+TGG 0.556874 tig0019276:+169083 None:intergenic
AACCTTTGTCATAAGCAAGA+AGG 0.557195 tig0019276:-168691 Msa1372460:three_prime_UTR
GGACAAGGGAAGACTCCCCT+TGG 0.557324 tig0019276:-168948 Msa1372460:CDS
GTGGGTAGAGAGCAAGAGAT+GGG 0.560152 tig0019276:-169225 Msa1372460:CDS
CGGATTCACAGTCAATCGAA+TGG 0.566881 tig0019276:-169187 Msa1372460:CDS
GCTAATGCAACCGGAGAACA+AGG 0.571637 tig0019276:-169131 Msa1372460:CDS
GAACATGGTGTCCACGTGGT+TGG 0.584310 tig0019276:-170199 Msa1372460:five_prime_UTR
TTACAAGCCAAGAGCACCAA+GGG 0.584331 tig0019276:+168932 None:intergenic
TATTCATGGAAGGTGGGCAA+TGG 0.584518 tig0019276:-169378 Msa1372460:CDS
CAATCGAATGGGCCACTCCA+TGG 0.585992 tig0019276:-169175 Msa1372460:CDS
GGTGGGTAGAGAGCAAGAGA+TGG 0.588337 tig0019276:-169226 Msa1372460:CDS
TTTCCACCAAATCTAACACC+AGG 0.597681 tig0019276:+169751 None:intergenic
AATAGCAGTAGTAGCTAACA+AGG 0.598050 tig0019276:+169858 None:intergenic
GAAGCCAAATCAGCTTAGGA+TGG 0.598596 tig0019276:-170177 Msa1372460:five_prime_UTR
AGAAATCTTAAGGTATATCG+TGG 0.599963 tig0019276:+170124 None:intergenic
TGACCCACTAGGCCTTGGCA+AGG 0.602653 tig0019276:-169438 Msa1372460:CDS
GAAATGCTGGGTCCTTGCCA+AGG 0.604301 tig0019276:+169426 None:intergenic
TGAGCTTATTCATGGAAGGT+GGG 0.606190 tig0019276:-169384 Msa1372460:CDS
ATAGAAAGAGCACAGTGGAG+TGG 0.606414 tig0019276:-170221 Msa1372460:five_prime_UTR
AAGCTGAGCTTATTCATGGA+AGG 0.607522 tig0019276:-169388 Msa1372460:CDS
AGTGCCTAGAAGAGTACCAA+AGG 0.608047 tig0019276:+169265 None:intergenic
TGTACCATTTGAGAAATGCT+GGG 0.608952 tig0019276:+169414 None:intergenic
GAGCACAGTGGAGTGGAACA+TGG 0.610835 tig0019276:-170214 Msa1372460:five_prime_UTR
ATGGGTCGATTTCTTCAACC+CGG 0.612388 tig0019276:-169207 Msa1372460:CDS
CAGATATATAGGTAAATGCA+AGG 0.612552 tig0019276:+168754 None:intergenic
GTCGACCCAGAATGGCTCGA+TGG 0.628418 tig0019276:-169724 Msa1372460:CDS
ACTACTGCTATTGGAGCCAA+AGG 0.636609 tig0019276:-169847 Msa1372460:CDS
CGAGCCATTCTGGGTCGACG+AGG 0.636930 tig0019276:+169728 None:intergenic
GCACTCAGTTGATTCTCATG+GGG 0.642271 tig0019276:-169247 Msa1372460:CDS
GGGTCAAAACCAAAGTCACC+TGG 0.643002 tig0019276:+169455 None:intergenic
ACTGCTATTGGAGCCAAAGG+TGG 0.648832 tig0019276:-169844 Msa1372460:CDS
TTTACAAGCCAAGAGCACCA+AGG 0.650086 tig0019276:+168931 None:intergenic
TCTACTTTGAAGCTGGACAA+GGG 0.657323 tig0019276:-168962 Msa1372460:CDS
TGTGTGAGAGAGAACCTGAA+GGG 0.667684 tig0019276:+170061 None:intergenic
AGAATGGAGCAATTGCATTG+GGG 0.695433 tig0019276:+169288 None:intergenic
TGCATTAGCAAAGTTCTCGG+CGG 0.703055 tig0019276:+169145 None:intergenic
TGATTTGGCTTCCAACCACG+TGG 0.709465 tig0019276:+170188 None:intergenic
TTCCACCAAATCTAACACCA+GGG 0.730328 tig0019276:+169752 None:intergenic
GGAGAACAAGGCTACCCAGG+GGG 0.731673 tig0019276:-169119 Msa1372460:CDS
GTGTGTGAGAGAGAACCTGA+AGG 0.733454 tig0019276:+170060 None:intergenic
AGTGGAACATGGTGTCCACG+TGG 0.737131 tig0019276:-170203 Msa1372460:five_prime_UTR
CGGAGAACAAGGCTACCCAG+GGG 0.738163 tig0019276:-169120 Msa1372460:CDS
TACAAGCCAAGAGCACCAAG+GGG 0.741553 tig0019276:+168933 None:intergenic
AAAAGATAGAAAGAGCACAG+TGG 0.743548 tig0019276:-170226 Msa1372460:five_prime_UTR
GTGTGAGAGAGAACCTGAAG+GGG 0.761994 tig0019276:+170062 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAATAATCAATTCTAA+AGG + tig0019276:169198-169217 None:intergenic 15.0%
!! AAACAAATGTAAAGATAAAT+TGG - tig0019276:170198-170217 Msa1372460:five_prime_UTR 15.0%
!! GAAAAAATAATCAATTCTAA+AGG + tig0019276:169198-169217 None:intergenic 15.0%
!! AAACAAATGTAAAGATAAAT+TGG - tig0019276:170198-170217 Msa1372460:five_prime_UTR 15.0%
!! AATCTAAACAAGAAATCTTA+AGG + tig0019276:168753-168772 None:intergenic 20.0%
!!! TAAAATCGATTTAAGTTAAG+TGG + tig0019276:169175-169194 None:intergenic 20.0%
!! AATAAATTTAAGTAAACGTG+TGG + tig0019276:169261-169280 None:intergenic 20.0%
!! AACATGAATTAAATTTGTCA+TGG + tig0019276:170035-170054 None:intergenic 20.0%
!! TTTAATTCATGTTCTAATGT+TGG - tig0019276:170042-170061 Msa1372460:five_prime_UTR 20.0%
!! AATCTAAACAAGAAATCTTA+AGG + tig0019276:168753-168772 None:intergenic 20.0%
!!! TAAAATCGATTTAAGTTAAG+TGG + tig0019276:169175-169194 None:intergenic 20.0%
!! AATAAATTTAAGTAAACGTG+TGG + tig0019276:169261-169280 None:intergenic 20.0%
!! AACATGAATTAAATTTGTCA+TGG + tig0019276:170035-170054 None:intergenic 20.0%
!! TTTAATTCATGTTCTAATGT+TGG - tig0019276:170042-170061 Msa1372460:five_prime_UTR 20.0%
! AGTGTAAAAGATAAGACAAA+TGG - tig0019276:168911-168930 Msa1372460:three_prime_UTR 25.0%
!!! TTTTTCAATTGTAGATTACC+AGG - tig0019276:169391-169410 Msa1372460:CDS 25.0%
! TATGGATCAAACAGATATAT+AGG + tig0019276:170124-170143 None:intergenic 25.0%
! AGTGTAAAAGATAAGACAAA+TGG - tig0019276:168911-168930 Msa1372460:three_prime_UTR 25.0%
!!! TTTTTCAATTGTAGATTACC+AGG - tig0019276:169391-169410 Msa1372460:CDS 25.0%
! TATGGATCAAACAGATATAT+AGG + tig0019276:170124-170143 None:intergenic 25.0%
AGAAATCTTAAGGTATATCG+TGG + tig0019276:168743-168762 None:intergenic 30.0%
TTAGATTTCATTGTCCTACA+TGG - tig0019276:168766-168785 Msa1372460:three_prime_UTR 30.0%
AGTAATAGTCTAATAGAGAC+TGG + tig0019276:168875-168894 None:intergenic 30.0%
AATTTAAGTAAACGTGTGGA+AGG + tig0019276:169257-169276 None:intergenic 30.0%
CAGATATATAGGTAAATGCA+AGG + tig0019276:170113-170132 None:intergenic 30.0%
GTTAGACTTTGTATGCATAT+TGG + tig0019276:170156-170175 None:intergenic 30.0%
AGAAATCTTAAGGTATATCG+TGG + tig0019276:168743-168762 None:intergenic 30.0%
TTAGATTTCATTGTCCTACA+TGG - tig0019276:168766-168785 Msa1372460:three_prime_UTR 30.0%
AGTAATAGTCTAATAGAGAC+TGG + tig0019276:168875-168894 None:intergenic 30.0%
AATTTAAGTAAACGTGTGGA+AGG + tig0019276:169257-169276 None:intergenic 30.0%
CAGATATATAGGTAAATGCA+AGG + tig0019276:170113-170132 None:intergenic 30.0%
GTTAGACTTTGTATGCATAT+TGG + tig0019276:170156-170175 None:intergenic 30.0%
! AAAAGATAGAAAGAGCACAG+TGG - tig0019276:168638-168657 Msa1372460:three_prime_UTR 35.0%
ATTTCCATCCTAAGCTGATT+TGG + tig0019276:168694-168713 None:intergenic 35.0%
GATGGAAATCCATTTCCTAT+TGG - tig0019276:168705-168724 Msa1372460:three_prime_UTR 35.0%
! GATTTTGGACCAATAGGAAA+TGG + tig0019276:168717-168736 None:intergenic 35.0%
! TGGATAGATTTTGGACCAAT+AGG + tig0019276:168723-168742 None:intergenic 35.0%
! GGTATATCGTGGATAGATTT+TGG + tig0019276:168732-168751 None:intergenic 35.0%
AATAGCAGTAGTAGCTAACA+AGG + tig0019276:169009-169028 None:intergenic 35.0%
TTGTTAGCTACTACTGCTAT+TGG - tig0019276:169008-169027 Msa1372460:CDS 35.0%
! GCAGCAACAATAAGTCTTTT+AGG + tig0019276:169062-169081 None:intergenic 35.0%
TGTACCATTTGAGAAATGCT+GGG + tig0019276:169453-169472 None:intergenic 35.0%
! AATGTAAACTCCGTTTTCGA+TGG + tig0019276:169803-169822 None:intergenic 35.0%
!!! CTGATTTTCTACTTTGAAGC+TGG - tig0019276:169895-169914 Msa1372460:CDS 35.0%
AACCTTTGTCATAAGCAAGA+AGG - tig0019276:170173-170192 Msa1372460:five_prime_UTR 35.0%
TACCTTCTTGCTTATGACAA+AGG + tig0019276:170178-170197 None:intergenic 35.0%
! AAAAGATAGAAAGAGCACAG+TGG - tig0019276:168638-168657 Msa1372460:three_prime_UTR 35.0%
ATTTCCATCCTAAGCTGATT+TGG + tig0019276:168694-168713 None:intergenic 35.0%
GATGGAAATCCATTTCCTAT+TGG - tig0019276:168705-168724 Msa1372460:three_prime_UTR 35.0%
! GATTTTGGACCAATAGGAAA+TGG + tig0019276:168717-168736 None:intergenic 35.0%
! TGGATAGATTTTGGACCAAT+AGG + tig0019276:168723-168742 None:intergenic 35.0%
! GGTATATCGTGGATAGATTT+TGG + tig0019276:168732-168751 None:intergenic 35.0%
AATAGCAGTAGTAGCTAACA+AGG + tig0019276:169009-169028 None:intergenic 35.0%
TTGTTAGCTACTACTGCTAT+TGG - tig0019276:169008-169027 Msa1372460:CDS 35.0%
! GCAGCAACAATAAGTCTTTT+AGG + tig0019276:169062-169081 None:intergenic 35.0%
TGTACCATTTGAGAAATGCT+GGG + tig0019276:169453-169472 None:intergenic 35.0%
! AATGTAAACTCCGTTTTCGA+TGG + tig0019276:169803-169822 None:intergenic 35.0%
!!! CTGATTTTCTACTTTGAAGC+TGG - tig0019276:169895-169914 Msa1372460:CDS 35.0%
AACCTTTGTCATAAGCAAGA+AGG - tig0019276:170173-170192 Msa1372460:five_prime_UTR 35.0%
TACCTTCTTGCTTATGACAA+AGG + tig0019276:170178-170197 None:intergenic 35.0%
! GTTTTCAAAGAAGGCCATGT+AGG + tig0019276:168783-168802 None:intergenic 40.0%
!!! GACTGGTTTTGTAGTTCACT+TGG + tig0019276:168858-168877 None:intergenic 40.0%
TTGGGATCTTCCTTCTTATC+TGG - tig0019276:168966-168985 Msa1372460:CDS 40.0%
CAGTAGTAGCTAACAAGGTT+TGG + tig0019276:169004-169023 None:intergenic 40.0%
TTCCACCAAATCTAACACCA+GGG + tig0019276:169115-169134 None:intergenic 40.0%
TTTCCACCAAATCTAACACC+AGG + tig0019276:169116-169135 None:intergenic 40.0%
TGTAGATTACCAGGTGACTT+TGG - tig0019276:169400-169419 Msa1372460:CDS 40.0%
CTGTACCATTTGAGAAATGC+TGG + tig0019276:169454-169473 None:intergenic 40.0%
AGAGAAGCTGAGCTTATTCA+TGG - tig0019276:169472-169491 Msa1372460:intron 40.0%
AAGCTGAGCTTATTCATGGA+AGG - tig0019276:169476-169495 Msa1372460:intron 40.0%
TGAGCTTATTCATGGAAGGT+GGG - tig0019276:169480-169499 Msa1372460:intron 40.0%
AGAATGGAGCAATTGCATTG+GGG + tig0019276:169579-169598 None:intergenic 40.0%
GAGAATGGAGCAATTGCATT+GGG + tig0019276:169580-169599 None:intergenic 40.0%
!! AGAAGAGTACCAAAGGAGAA+TGG + tig0019276:169595-169614 None:intergenic 40.0%
TTCTCCTTTGGTACTCTTCT+AGG - tig0019276:169595-169614 Msa1372460:intron 40.0%
ATTCGATTGACTGTGAATCC+GGG + tig0019276:169678-169697 None:intergenic 40.0%
CATTCGATTGACTGTGAATC+CGG + tig0019276:169679-169698 None:intergenic 40.0%
GGATTCACAGTCAATCGAAT+GGG - tig0019276:169678-169697 Msa1372460:intron 40.0%
GGTTGCATTAGCAAAGTTCT+CGG + tig0019276:169725-169744 None:intergenic 40.0%
GAGAACTTTGCTAATGCAAC+CGG - tig0019276:169724-169743 Msa1372460:CDS 40.0%
GAAGCTAGAGAGATTGAAAC+TGG - tig0019276:169834-169853 Msa1372460:CDS 40.0%
!! TTCTACTTTGAAGCTGGACA+AGG - tig0019276:169901-169920 Msa1372460:CDS 40.0%
!! TCTACTTTGAAGCTGGACAA+GGG - tig0019276:169902-169921 Msa1372460:CDS 40.0%
! GCATATTGGCTACACATGTA+TGG + tig0019276:170142-170161 None:intergenic 40.0%
! GTTTTCAAAGAAGGCCATGT+AGG + tig0019276:168783-168802 None:intergenic 40.0%
!!! GACTGGTTTTGTAGTTCACT+TGG + tig0019276:168858-168877 None:intergenic 40.0%
TTGGGATCTTCCTTCTTATC+TGG - tig0019276:168966-168985 Msa1372460:CDS 40.0%
CAGTAGTAGCTAACAAGGTT+TGG + tig0019276:169004-169023 None:intergenic 40.0%
TTCCACCAAATCTAACACCA+GGG + tig0019276:169115-169134 None:intergenic 40.0%
TTTCCACCAAATCTAACACC+AGG + tig0019276:169116-169135 None:intergenic 40.0%
TGTAGATTACCAGGTGACTT+TGG - tig0019276:169400-169419 Msa1372460:CDS 40.0%
CTGTACCATTTGAGAAATGC+TGG + tig0019276:169454-169473 None:intergenic 40.0%
AGAGAAGCTGAGCTTATTCA+TGG - tig0019276:169472-169491 Msa1372460:intron 40.0%
AAGCTGAGCTTATTCATGGA+AGG - tig0019276:169476-169495 Msa1372460:intron 40.0%
TGAGCTTATTCATGGAAGGT+GGG - tig0019276:169480-169499 Msa1372460:intron 40.0%
AGAATGGAGCAATTGCATTG+GGG + tig0019276:169579-169598 None:intergenic 40.0%
GAGAATGGAGCAATTGCATT+GGG + tig0019276:169580-169599 None:intergenic 40.0%
!! AGAAGAGTACCAAAGGAGAA+TGG + tig0019276:169595-169614 None:intergenic 40.0%
TTCTCCTTTGGTACTCTTCT+AGG - tig0019276:169595-169614 Msa1372460:intron 40.0%
ATTCGATTGACTGTGAATCC+GGG + tig0019276:169678-169697 None:intergenic 40.0%
CATTCGATTGACTGTGAATC+CGG + tig0019276:169679-169698 None:intergenic 40.0%
GGATTCACAGTCAATCGAAT+GGG - tig0019276:169678-169697 Msa1372460:intron 40.0%
GGTTGCATTAGCAAAGTTCT+CGG + tig0019276:169725-169744 None:intergenic 40.0%
GAGAACTTTGCTAATGCAAC+CGG - tig0019276:169724-169743 Msa1372460:CDS 40.0%
GAAGCTAGAGAGATTGAAAC+TGG - tig0019276:169834-169853 Msa1372460:CDS 40.0%
!! TTCTACTTTGAAGCTGGACA+AGG - tig0019276:169901-169920 Msa1372460:CDS 40.0%
!! TCTACTTTGAAGCTGGACAA+GGG - tig0019276:169902-169921 Msa1372460:CDS 40.0%
! GCATATTGGCTACACATGTA+TGG + tig0019276:170142-170161 None:intergenic 40.0%
! ATAGAAAGAGCACAGTGGAG+TGG - tig0019276:168643-168662 Msa1372460:three_prime_UTR 45.0%
GTTGGAAGCCAAATCAGCTT+AGG - tig0019276:168683-168702 Msa1372460:three_prime_UTR 45.0%
GAAGCCAAATCAGCTTAGGA+TGG - tig0019276:168687-168706 Msa1372460:three_prime_UTR 45.0%
! CCTGAAGGGGTTTTCAAAGA+AGG + tig0019276:168792-168811 None:intergenic 45.0%
! CCTTCTTTGAAAACCCCTTC+AGG - tig0019276:168789-168808 Msa1372460:three_prime_UTR 45.0%
TGTGTGAGAGAGAACCTGAA+GGG + tig0019276:168806-168825 None:intergenic 45.0%
!! ACATCTGGTGCTGTGTTGAA+TGG - tig0019276:168942-168961 Msa1372460:CDS 45.0%
!! TGGTGCTGTGTTGAATGGTT+TGG - tig0019276:168947-168966 Msa1372460:CDS 45.0%
! GGTGCTGTGTTGAATGGTTT+GGG - tig0019276:168948-168967 Msa1372460:CDS 45.0%
GGATCTTCCTTCTTATCTGG+AGG - tig0019276:168969-168988 Msa1372460:CDS 45.0%
CCTCTTACCTCCAGATAAGA+AGG + tig0019276:168979-168998 None:intergenic 45.0%
CCTTCTTATCTGGAGGTAAG+AGG - tig0019276:168976-168995 Msa1372460:CDS 45.0%
ACTACTGCTATTGGAGCCAA+AGG - tig0019276:169017-169036 Msa1372460:CDS 45.0%
CTTCTGCACCAAAGAAGTCA+TGG - tig0019276:169087-169106 Msa1372460:CDS 45.0%
! TGGATCCCTGGTGTTAGATT+TGG - tig0019276:169107-169126 Msa1372460:CDS 45.0%
! ATCCCTGGTGTTAGATTTGG+TGG - tig0019276:169110-169129 Msa1372460:CDS 45.0%
!!! GACTTTGGTTTTGACCCACT+AGG - tig0019276:169415-169434 Msa1372460:CDS 45.0%
AGGACCCAGCATTTCTCAAA+TGG - tig0019276:169446-169465 Msa1372460:CDS 45.0%
CTGAGCTTATTCATGGAAGG+TGG - tig0019276:169479-169498 Msa1372460:intron 45.0%
TATTCATGGAAGGTGGGCAA+TGG - tig0019276:169486-169505 Msa1372460:intron 45.0%
!! GCAGTTCTAGGCATCTTTGT+TGG - tig0019276:169511-169530 Msa1372460:intron 45.0%
TCTAGGCATCTTTGTTGGTC+AGG - tig0019276:169516-169535 Msa1372460:intron 45.0%
GGAGAATGGAGCAATTGCAT+TGG + tig0019276:169581-169600 None:intergenic 45.0%
GCAATTGCTCCATTCTCCTT+TGG - tig0019276:169583-169602 Msa1372460:intron 45.0%
!! AGTGCCTAGAAGAGTACCAA+AGG + tig0019276:169602-169621 None:intergenic 45.0%
! AGGCACTCAGTTGATTCTCA+TGG - tig0019276:169615-169634 Msa1372460:intron 45.0%
! GGCACTCAGTTGATTCTCAT+GGG - tig0019276:169616-169635 Msa1372460:intron 45.0%
! GCACTCAGTTGATTCTCATG+GGG - tig0019276:169617-169636 Msa1372460:intron 45.0%
! TCAGTTGATTCTCATGGGGT+GGG - tig0019276:169621-169640 Msa1372460:intron 45.0%
! ATGGGTCGATTTCTTCAACC+CGG - tig0019276:169657-169676 Msa1372460:intron 45.0%
CGGATTCACAGTCAATCGAA+TGG - tig0019276:169677-169696 Msa1372460:intron 45.0%
TGCATTAGCAAAGTTCTCGG+CGG + tig0019276:169722-169741 None:intergenic 45.0%
! GTTTTCGATGGTACCAGCAA+GGG + tig0019276:169791-169810 None:intergenic 45.0%
CTTGCTGGTACCATCGAAAA+CGG - tig0019276:169790-169809 Msa1372460:CDS 45.0%
! CTCTCTAGCTTCTCTGTATC+TGG + tig0019276:169826-169845 None:intergenic 45.0%
TGGCTGAGATTAAGCATGCT+AGG - tig0019276:169854-169873 Msa1372460:CDS 45.0%
!! TTACAAGCCAAGAGCACCAA+GGG + tig0019276:169935-169954 None:intergenic 45.0%
!! TTTACAAGCCAAGAGCACCA+AGG + tig0019276:169936-169955 None:intergenic 45.0%
TGTCATGGAGTAGCACACTT+AGG + tig0019276:170020-170039 None:intergenic 45.0%
! ATAGAAAGAGCACAGTGGAG+TGG - tig0019276:168643-168662 Msa1372460:three_prime_UTR 45.0%
GTTGGAAGCCAAATCAGCTT+AGG - tig0019276:168683-168702 Msa1372460:three_prime_UTR 45.0%
GAAGCCAAATCAGCTTAGGA+TGG - tig0019276:168687-168706 Msa1372460:three_prime_UTR 45.0%
! CCTGAAGGGGTTTTCAAAGA+AGG + tig0019276:168792-168811 None:intergenic 45.0%
! CCTTCTTTGAAAACCCCTTC+AGG - tig0019276:168789-168808 Msa1372460:three_prime_UTR 45.0%
TGTGTGAGAGAGAACCTGAA+GGG + tig0019276:168806-168825 None:intergenic 45.0%
!! ACATCTGGTGCTGTGTTGAA+TGG - tig0019276:168942-168961 Msa1372460:CDS 45.0%
!! TGGTGCTGTGTTGAATGGTT+TGG - tig0019276:168947-168966 Msa1372460:CDS 45.0%
! GGTGCTGTGTTGAATGGTTT+GGG - tig0019276:168948-168967 Msa1372460:CDS 45.0%
GGATCTTCCTTCTTATCTGG+AGG - tig0019276:168969-168988 Msa1372460:CDS 45.0%
CCTCTTACCTCCAGATAAGA+AGG + tig0019276:168979-168998 None:intergenic 45.0%
CCTTCTTATCTGGAGGTAAG+AGG - tig0019276:168976-168995 Msa1372460:CDS 45.0%
ACTACTGCTATTGGAGCCAA+AGG - tig0019276:169017-169036 Msa1372460:CDS 45.0%
CTTCTGCACCAAAGAAGTCA+TGG - tig0019276:169087-169106 Msa1372460:CDS 45.0%
! TGGATCCCTGGTGTTAGATT+TGG - tig0019276:169107-169126 Msa1372460:CDS 45.0%
! ATCCCTGGTGTTAGATTTGG+TGG - tig0019276:169110-169129 Msa1372460:CDS 45.0%
!!! GACTTTGGTTTTGACCCACT+AGG - tig0019276:169415-169434 Msa1372460:CDS 45.0%
AGGACCCAGCATTTCTCAAA+TGG - tig0019276:169446-169465 Msa1372460:CDS 45.0%
CTGAGCTTATTCATGGAAGG+TGG - tig0019276:169479-169498 Msa1372460:intron 45.0%
TATTCATGGAAGGTGGGCAA+TGG - tig0019276:169486-169505 Msa1372460:intron 45.0%
!! GCAGTTCTAGGCATCTTTGT+TGG - tig0019276:169511-169530 Msa1372460:intron 45.0%
TCTAGGCATCTTTGTTGGTC+AGG - tig0019276:169516-169535 Msa1372460:intron 45.0%
GGAGAATGGAGCAATTGCAT+TGG + tig0019276:169581-169600 None:intergenic 45.0%
GCAATTGCTCCATTCTCCTT+TGG - tig0019276:169583-169602 Msa1372460:intron 45.0%
!! AGTGCCTAGAAGAGTACCAA+AGG + tig0019276:169602-169621 None:intergenic 45.0%
! AGGCACTCAGTTGATTCTCA+TGG - tig0019276:169615-169634 Msa1372460:intron 45.0%
! GGCACTCAGTTGATTCTCAT+GGG - tig0019276:169616-169635 Msa1372460:intron 45.0%
! GCACTCAGTTGATTCTCATG+GGG - tig0019276:169617-169636 Msa1372460:intron 45.0%
! TCAGTTGATTCTCATGGGGT+GGG - tig0019276:169621-169640 Msa1372460:intron 45.0%
! ATGGGTCGATTTCTTCAACC+CGG - tig0019276:169657-169676 Msa1372460:intron 45.0%
CGGATTCACAGTCAATCGAA+TGG - tig0019276:169677-169696 Msa1372460:intron 45.0%
TGCATTAGCAAAGTTCTCGG+CGG + tig0019276:169722-169741 None:intergenic 45.0%
! GTTTTCGATGGTACCAGCAA+GGG + tig0019276:169791-169810 None:intergenic 45.0%
CTTGCTGGTACCATCGAAAA+CGG - tig0019276:169790-169809 Msa1372460:CDS 45.0%
! CTCTCTAGCTTCTCTGTATC+TGG + tig0019276:169826-169845 None:intergenic 45.0%
TGGCTGAGATTAAGCATGCT+AGG - tig0019276:169854-169873 Msa1372460:CDS 45.0%
!! TTACAAGCCAAGAGCACCAA+GGG + tig0019276:169935-169954 None:intergenic 45.0%
!! TTTACAAGCCAAGAGCACCA+AGG + tig0019276:169936-169955 None:intergenic 45.0%
TGTCATGGAGTAGCACACTT+AGG + tig0019276:170020-170039 None:intergenic 45.0%
! TGATTTGGCTTCCAACCACG+TGG + tig0019276:168679-168698 None:intergenic 50.0%
GTGTGAGAGAGAACCTGAAG+GGG + tig0019276:168805-168824 None:intergenic 50.0%
GTGTGTGAGAGAGAACCTGA+AGG + tig0019276:168807-168826 None:intergenic 50.0%
CAAATGGCAGCTGCAACATC+TGG - tig0019276:168927-168946 Msa1372460:exon 50.0%
ACTGCTATTGGAGCCAAAGG+TGG - tig0019276:169020-169039 Msa1372460:CDS 50.0%
CCAGGGATCCATGACTTCTT+TGG + tig0019276:169098-169117 None:intergenic 50.0%
CCAAAGAAGTCATGGATCCC+TGG - tig0019276:169095-169114 Msa1372460:CDS 50.0%
ACGATCCATCGAGCCATTCT+GGG + tig0019276:169148-169167 None:intergenic 50.0%
TACGATCCATCGAGCCATTC+TGG + tig0019276:169149-169168 None:intergenic 50.0%
GGGTCAAAACCAAAGTCACC+TGG + tig0019276:169412-169431 None:intergenic 50.0%
GCATCTTTGTTGGTCAGGCA+TGG - tig0019276:169521-169540 Msa1372460:intron 50.0%
TTTGTTGGTCAGGCATGGAG+TGG - tig0019276:169526-169545 Msa1372460:intron 50.0%
GAGTGGAGTTCCATGGTTTG+AGG - tig0019276:169543-169562 Msa1372460:intron 50.0%
! CTCAGTTGATTCTCATGGGG+TGG - tig0019276:169620-169639 Msa1372460:intron 50.0%
GTGGGTAGAGAGCAAGAGAT+GGG - tig0019276:169639-169658 Msa1372460:intron 50.0%
! TTCTCGGCGGTTTTTGACCA+TGG + tig0019276:169709-169728 None:intergenic 50.0%
GCTAATGCAACCGGAGAACA+AGG - tig0019276:169733-169752 Msa1372460:CDS 50.0%
! GGTCGAAGAATTTTCCCCCT+GGG + tig0019276:169762-169781 None:intergenic 50.0%
TGGTACCAGCAAGGGACAAT+GGG + tig0019276:169783-169802 None:intergenic 50.0%
ATGGTACCAGCAAGGGACAA+TGG + tig0019276:169784-169803 None:intergenic 50.0%
! CGTTTTCGATGGTACCAGCA+AGG + tig0019276:169792-169811 None:intergenic 50.0%
!! GCATGCTAGGCTTGCTATGT+TGG - tig0019276:169867-169886 Msa1372460:CDS 50.0%
!! TACAAGCCAAGAGCACCAAG+GGG + tig0019276:169934-169953 None:intergenic 50.0%
! TGATTTGGCTTCCAACCACG+TGG + tig0019276:168679-168698 None:intergenic 50.0%
GTGTGAGAGAGAACCTGAAG+GGG + tig0019276:168805-168824 None:intergenic 50.0%
GTGTGTGAGAGAGAACCTGA+AGG + tig0019276:168807-168826 None:intergenic 50.0%
CAAATGGCAGCTGCAACATC+TGG - tig0019276:168927-168946 Msa1372460:exon 50.0%
ACTGCTATTGGAGCCAAAGG+TGG - tig0019276:169020-169039 Msa1372460:CDS 50.0%
CCAGGGATCCATGACTTCTT+TGG + tig0019276:169098-169117 None:intergenic 50.0%
CCAAAGAAGTCATGGATCCC+TGG - tig0019276:169095-169114 Msa1372460:CDS 50.0%
ACGATCCATCGAGCCATTCT+GGG + tig0019276:169148-169167 None:intergenic 50.0%
TACGATCCATCGAGCCATTC+TGG + tig0019276:169149-169168 None:intergenic 50.0%
GGGTCAAAACCAAAGTCACC+TGG + tig0019276:169412-169431 None:intergenic 50.0%
GCATCTTTGTTGGTCAGGCA+TGG - tig0019276:169521-169540 Msa1372460:intron 50.0%
TTTGTTGGTCAGGCATGGAG+TGG - tig0019276:169526-169545 Msa1372460:intron 50.0%
GAGTGGAGTTCCATGGTTTG+AGG - tig0019276:169543-169562 Msa1372460:intron 50.0%
! CTCAGTTGATTCTCATGGGG+TGG - tig0019276:169620-169639 Msa1372460:intron 50.0%
GTGGGTAGAGAGCAAGAGAT+GGG - tig0019276:169639-169658 Msa1372460:intron 50.0%
! TTCTCGGCGGTTTTTGACCA+TGG + tig0019276:169709-169728 None:intergenic 50.0%
GCTAATGCAACCGGAGAACA+AGG - tig0019276:169733-169752 Msa1372460:CDS 50.0%
! GGTCGAAGAATTTTCCCCCT+GGG + tig0019276:169762-169781 None:intergenic 50.0%
TGGTACCAGCAAGGGACAAT+GGG + tig0019276:169783-169802 None:intergenic 50.0%
ATGGTACCAGCAAGGGACAA+TGG + tig0019276:169784-169803 None:intergenic 50.0%
! CGTTTTCGATGGTACCAGCA+AGG + tig0019276:169792-169811 None:intergenic 50.0%
!! GCATGCTAGGCTTGCTATGT+TGG - tig0019276:169867-169886 Msa1372460:CDS 50.0%
!! TACAAGCCAAGAGCACCAAG+GGG + tig0019276:169934-169953 None:intergenic 50.0%
GAGCACAGTGGAGTGGAACA+TGG - tig0019276:168650-168669 Msa1372460:three_prime_UTR 55.0%
AGTGGAACATGGTGTCCACG+TGG - tig0019276:168661-168680 Msa1372460:three_prime_UTR 55.0%
GAACATGGTGTCCACGTGGT+TGG - tig0019276:168665-168684 Msa1372460:three_prime_UTR 55.0%
ACCAGCTGCAACACCACCTT+TGG + tig0019276:169036-169055 None:intergenic 55.0%
GAAACCTCGTCGACCCAGAA+TGG - tig0019276:169132-169151 Msa1372460:CDS 55.0%
!! GGTTTTGACCCACTAGGCCT+TGG - tig0019276:169421-169440 Msa1372460:CDS 55.0%
GAAATGCTGGGTCCTTGCCA+AGG + tig0019276:169441-169460 None:intergenic 55.0%
TGGGCAATGGCTGCAGTTCT+AGG - tig0019276:169499-169518 Msa1372460:intron 55.0%
AGGCATGGAGTGGAGTTCCA+TGG - tig0019276:169536-169555 Msa1372460:intron 55.0%
! GGAGTTCCATGGTTTGAGGC+TGG - tig0019276:169547-169566 Msa1372460:intron 55.0%
TCAGCTCCAGCCTCAAACCA+TGG + tig0019276:169556-169575 None:intergenic 55.0%
GGTGGGTAGAGAGCAAGAGA+TGG - tig0019276:169638-169657 Msa1372460:intron 55.0%
CAATCGAATGGGCCACTCCA+TGG - tig0019276:169689-169708 Msa1372460:intron 55.0%
! GGCGGTTTTTGACCATGGAG+TGG + tig0019276:169704-169723 None:intergenic 55.0%
! GGGTCGAAGAATTTTCCCCC+TGG + tig0019276:169763-169782 None:intergenic 55.0%
TTCGACCCATTGTCCCTTGC+TGG - tig0019276:169775-169794 Msa1372460:CDS 55.0%
!! AAGACTCCCCTTGGTGCTCT+TGG - tig0019276:169925-169944 Msa1372460:CDS 55.0%
GAGCACAGTGGAGTGGAACA+TGG - tig0019276:168650-168669 Msa1372460:three_prime_UTR 55.0%
AGTGGAACATGGTGTCCACG+TGG - tig0019276:168661-168680 Msa1372460:three_prime_UTR 55.0%
GAACATGGTGTCCACGTGGT+TGG - tig0019276:168665-168684 Msa1372460:three_prime_UTR 55.0%
ACCAGCTGCAACACCACCTT+TGG + tig0019276:169036-169055 None:intergenic 55.0%
GAAACCTCGTCGACCCAGAA+TGG - tig0019276:169132-169151 Msa1372460:CDS 55.0%
!! GGTTTTGACCCACTAGGCCT+TGG - tig0019276:169421-169440 Msa1372460:CDS 55.0%
GAAATGCTGGGTCCTTGCCA+AGG + tig0019276:169441-169460 None:intergenic 55.0%
TGGGCAATGGCTGCAGTTCT+AGG - tig0019276:169499-169518 Msa1372460:intron 55.0%
AGGCATGGAGTGGAGTTCCA+TGG - tig0019276:169536-169555 Msa1372460:intron 55.0%
! GGAGTTCCATGGTTTGAGGC+TGG - tig0019276:169547-169566 Msa1372460:intron 55.0%
TCAGCTCCAGCCTCAAACCA+TGG + tig0019276:169556-169575 None:intergenic 55.0%
GGTGGGTAGAGAGCAAGAGA+TGG - tig0019276:169638-169657 Msa1372460:intron 55.0%
CAATCGAATGGGCCACTCCA+TGG - tig0019276:169689-169708 Msa1372460:intron 55.0%
! GGCGGTTTTTGACCATGGAG+TGG + tig0019276:169704-169723 None:intergenic 55.0%
! GGGTCGAAGAATTTTCCCCC+TGG + tig0019276:169763-169782 None:intergenic 55.0%
TTCGACCCATTGTCCCTTGC+TGG - tig0019276:169775-169794 Msa1372460:CDS 55.0%
!! AAGACTCCCCTTGGTGCTCT+TGG - tig0019276:169925-169944 Msa1372460:CDS 55.0%
!! GCCAAAGGTGGTGTTGCAGC+TGG - tig0019276:169032-169051 Msa1372460:CDS 60.0%
GTCGACCCAGAATGGCTCGA+TGG - tig0019276:169140-169159 Msa1372460:CDS 60.0%
TGACCCACTAGGCCTTGGCA+AGG - tig0019276:169426-169445 Msa1372460:CDS 60.0%
GGTCCTTGCCAAGGCCTAGT+GGG + tig0019276:169432-169451 None:intergenic 60.0%
ACCGGAGAACAAGGCTACCC+AGG - tig0019276:169742-169761 Msa1372460:CDS 60.0%
!! CCCTGGGTAGCCTTGTTCTC+CGG + tig0019276:169746-169765 None:intergenic 60.0%
CCGGAGAACAAGGCTACCCA+GGG - tig0019276:169743-169762 Msa1372460:CDS 60.0%
CGGAGAACAAGGCTACCCAG+GGG - tig0019276:169744-169763 Msa1372460:CDS 60.0%
GGAGAACAAGGCTACCCAGG+GGG - tig0019276:169745-169764 Msa1372460:CDS 60.0%
GGACAAGGGAAGACTCCCCT+TGG - tig0019276:169916-169935 Msa1372460:CDS 60.0%
!! GCCAAAGGTGGTGTTGCAGC+TGG - tig0019276:169032-169051 Msa1372460:CDS 60.0%
GTCGACCCAGAATGGCTCGA+TGG - tig0019276:169140-169159 Msa1372460:CDS 60.0%
TGACCCACTAGGCCTTGGCA+AGG - tig0019276:169426-169445 Msa1372460:CDS 60.0%
GGTCCTTGCCAAGGCCTAGT+GGG + tig0019276:169432-169451 None:intergenic 60.0%
ACCGGAGAACAAGGCTACCC+AGG - tig0019276:169742-169761 Msa1372460:CDS 60.0%
!! CCCTGGGTAGCCTTGTTCTC+CGG + tig0019276:169746-169765 None:intergenic 60.0%
CCGGAGAACAAGGCTACCCA+GGG - tig0019276:169743-169762 Msa1372460:CDS 60.0%
CGGAGAACAAGGCTACCCAG+GGG - tig0019276:169744-169763 Msa1372460:CDS 60.0%
GGAGAACAAGGCTACCCAGG+GGG - tig0019276:169745-169764 Msa1372460:CDS 60.0%
GGACAAGGGAAGACTCCCCT+TGG - tig0019276:169916-169935 Msa1372460:CDS 60.0%
CGAGCCATTCTGGGTCGACG+AGG + tig0019276:169139-169158 None:intergenic 65.0%
GGGTCCTTGCCAAGGCCTAG+TGG + tig0019276:169433-169452 None:intergenic 65.0%
CGAGCCATTCTGGGTCGACG+AGG + tig0019276:169139-169158 None:intergenic 65.0%
GGGTCCTTGCCAAGGCCTAG+TGG + tig0019276:169433-169452 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0019276 gene 168626 170260 168626 ID=Msa1372460;Name=Msa1372460
tig0019276 mRNA 168626 170260 168626 ID=Msa1372460-mRNA-1;Parent=Msa1372460;Name=Msa1372460-mRNA-1;_AED=0.00;_eAED=0.00;_QI=304|1|1|1|1|1|2|306|261
tig0019276 exon 168626 169481 168626 ID=Msa1372460-mRNA-1:exon:2719;Parent=Msa1372460-mRNA-1
tig0019276 exon 169721 170260 169721 ID=Msa1372460-mRNA-1:exon:2718;Parent=Msa1372460-mRNA-1
tig0019276 five_prime_UTR 169957 170260 169957 ID=Msa1372460-mRNA-1:five_prime_utr;Parent=Msa1372460-mRNA-1
tig0019276 CDS 169721 169956 169721 ID=Msa1372460-mRNA-1:cds;Parent=Msa1372460-mRNA-1
tig0019276 CDS 168932 169481 168932 ID=Msa1372460-mRNA-1:cds;Parent=Msa1372460-mRNA-1
tig0019276 three_prime_UTR 168626 168931 168626 ID=Msa1372460-mRNA-1:three_prime_utr;Parent=Msa1372460-mRNA-1
Gene Sequence

>Msa1372460

ATGGCAGCTGCAACATCTGGTGCTGTGTTGAATGGTTTGGGATCTTCCTTCTTATCTGGAGGTAAGAGGAGCCAAACCTTGTTAGCTACTACTGCTATTGGAGCCAAAGGTGGTGTTGCAGCTGGTAGTCCTAAAAGACTTATTGTTGCTGCTGCTGCTTCTGCACCAAAGAAGTCATGGATCCCTGGTGTTAGATTTGGTGGAAACCTCGTCGACCCAGAATGGCTCGATGGATCATTACCAGGTGACTTTGGTTTTGACCCACTAGGCCTTGGCAAGGACCCAGCATTTCTCAAATGGTACAGAGAAGCTGAGCTTATTCATGGAAGGTGGGCAATGGCTGCAGTTCTAGGCATCTTTGTTGGTCAGGCATGGAGTGGAGTTCCATGGTTTGAGGCTGGAGCTGACCCCAATGCAATTGCTCCATTCTCCTTTGGTACTCTTCTAGGCACTCAGTTGATTCTCATGGGGTGGGTAGAGAGCAAGAGATGGGTCGATTTCTTCAACCCGGATTCACAGTCAATCGAATGGGCCACTCCATGGTCAAAAACCGCCGAGAACTTTGCTAATGCAACCGGAGAACAAGGCTACCCAGGGGGAAAATTCTTCGACCCATTGTCCCTTGCTGGTACCATCGAAAACGGAGTTTACATTCCAGATACAGAGAAGCTAGAGAGATTGAAACTGGCTGAGATTAAGCATGCTAGGCTTGCTATGTTGGCTATGCTGATTTTCTACTTTGAAGCTGGACAAGGGAAGACTCCCCTTGGTGCTCTTGGCTTGTAA

Protein sequence

>Msa1372460

MAAATSGAVLNGLGSSFLSGGKRSQTLLATTAIGAKGGVAAGSPKRLIVAAAASAPKKSWIPGVRFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSIEWATPWSKTAENFANATGEQGYPGGKFFDPLSLAGTIENGVYIPDTEKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL*