AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1045750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1045750 MtrunA17_Chr7g0215351 94.737 171 9 0 11 181 11 181 1.57e-124 348
Msa1045750 MtrunA17_Chr7g0215381 94.152 171 10 0 11 181 11 181 2.60e-124 347
Msa1045750 MtrunA17_Chr7g0215421 94.737 171 9 0 11 181 11 181 3.00e-124 347
Msa1045750 MtrunA17_Chr7g0215361 94.706 170 9 0 12 181 12 181 6.69e-124 346
Msa1045750 MtrunA17_Chr7g0215431 94.118 170 10 0 12 181 12 181 1.11e-122 343
Msa1045750 MtrunA17_Chr6g0457471 84.916 179 26 1 4 181 2 180 1.36e-114 323
Msa1045750 MtrunA17_Chr6g0457461 84.358 179 24 2 4 181 2 177 7.50e-112 316
Msa1045750 MtrunA17_Chr4g0072241 50.641 156 73 3 28 180 15 169 8.80e-58 179
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1045750 AT1G67090.1 71.429 182 47 2 1 181 1 178 1.12e-93 270
Msa1045750 AT5G38430.1 70.879 182 48 2 1 181 1 178 1.11e-92 268
Msa1045750 AT5G38430.2 70.879 182 48 2 1 181 1 178 1.11e-92 268
Msa1045750 AT5G38410.1 70.330 182 49 2 1 181 1 178 2.16e-92 267
Msa1045750 AT5G38420.1 70.330 182 49 2 1 181 1 178 7.13e-92 266
Msa1045750 AT5G38410.3 68.449 187 49 3 1 181 1 183 3.83e-90 261
Msa1045750 AT5G38410.2 67.582 182 47 3 1 181 1 171 1.34e-85 249
Msa1045750 AT1G67090.2 65.217 115 35 2 1 114 1 111 1.78e-45 146

Find 64 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCTTAATATTGTGGTAAT+TGG 0.181671 7_2:+5900571 None:intergenic
AAGAAGTTGATTACCTTATA+AGG 0.244592 7_2:-5900032 Msa1045750:CDS
AAATCTAACAAGTTGGTATT+AGG 0.269347 7_2:-5900600 Msa1045750:five_prime_UTR
CAACCCATCCCTTCCTTATA+AGG 0.273690 7_2:+5900019 None:intergenic
CTAAAACTTGCTATATATAA+TGG 0.294582 7_2:+5900521 None:intergenic
GGTAAAGATGAGAATGAATT+AGG 0.306324 7_2:+5899343 None:intergenic
TCTTTGTTGATCTTTGTAAC+TGG 0.311725 7_2:+5900334 None:intergenic
TTTCTTTAATATCATACTAT+TGG 0.318252 7_2:+5899383 None:intergenic
CAATATTAAGACCATAATAT+TGG 0.334349 7_2:-5900561 Msa1045750:five_prime_UTR
GAAGGGATGGGTTGCTTGCT+TGG 0.368783 7_2:-5900010 Msa1045750:CDS
GATACTATGATGGACGTTAC+TGG 0.371866 7_2:-5899809 Msa1045750:CDS
CGATTCTTCTCAAGTGTTGA+AGG 0.396980 7_2:-5899754 Msa1045750:CDS
ACCATTGACCAGAGAACAAT+TGG 0.397843 7_2:-5900058 Msa1045750:CDS
GATTTCAAAATGCAAATGTA+TGG 0.398278 7_2:-5899511 Msa1045750:three_prime_UTR
ATGTGGAAGTTGCCTTTGTT+TGG 0.411503 7_2:-5899783 Msa1045750:CDS
GCCAATTGTTCTCTGGTCAA+TGG 0.416317 7_2:+5900057 None:intergenic
TCTTCCACCATTGCTTGTAA+TGG 0.422658 7_2:+5900303 None:intergenic
TACAGTTAACCGTGCCTCTT+CGG 0.432912 7_2:-5900410 Msa1045750:CDS
TCAAACTTCTTCTTGCCAAT+AGG 0.435806 7_2:+5900099 None:intergenic
ATAAGAGTTAATAAATGAAA+TGG 0.440450 7_2:-5899488 Msa1045750:three_prime_UTR
ATGATACGGACAAAGGCATC+AGG 0.443523 7_2:+5899705 None:intergenic
TTCAAGTTCAAGCCATTACA+AGG 0.460492 7_2:+5899425 None:intergenic
CTTCAACACTTGAGAAGAAT+CGG 0.461194 7_2:+5899755 None:intergenic
TAATCACTCTCTGCTGCCAT+TGG 0.470602 7_2:-5899603 Msa1045750:three_prime_UTR
GATGCCTTTGTCCGTATCAT+CGG 0.484184 7_2:-5899702 Msa1045750:CDS
GGTGCGGTGGCTCCATTCGT+TGG 0.494503 7_2:-5900379 Msa1045750:CDS
CTTTGTTGATCTTTGTAACT+GGG 0.495423 7_2:+5900335 None:intergenic
CTCAAAATTTAGTAGACTGC+AGG 0.495678 7_2:+5899630 None:intergenic
ATTACCTTATAAGGAAGGGA+TGG 0.507588 7_2:-5900023 Msa1045750:CDS
AACTTCTTCTTGCCAATAGG+AGG 0.515017 7_2:+5900102 None:intergenic
AGTTGATTACCTTATAAGGA+AGG 0.522099 7_2:-5900028 Msa1045750:CDS
ATATTATGGTCTTAATATTG+TGG 0.527737 7_2:+5900564 None:intergenic
ATTACTTCCATTACAAGCAA+TGG 0.539617 7_2:-5900310 Msa1045750:CDS
CATAGTATCCTGGTGACTTG+TGG 0.542155 7_2:+5899823 None:intergenic
CGTGCCTCTTCGGTACAATC+CGG 0.544084 7_2:-5900400 Msa1045750:CDS
CGTGAGAACCACAAGTCACC+AGG 0.544938 7_2:-5899831 Msa1045750:CDS
GTTGGACTAAAGTCCATGGC+TGG 0.555609 7_2:-5900361 Msa1045750:CDS
AACGAATGGAGCCACCGCAC+CGG 0.556419 7_2:+5900381 None:intergenic
TTACCTTATAAGGAAGGGAT+GGG 0.559428 7_2:-5900022 Msa1045750:CDS
AGCTGAAGAGGACATGATAG+AGG 0.561007 7_2:+5900438 None:intergenic
TTCGGTACAATCCGGTGCGG+TGG 0.565195 7_2:-5900392 Msa1045750:CDS
CTTGAAACTTTAAATAACAA+AGG 0.567264 7_2:-5899408 Msa1045750:three_prime_UTR
GTTGATTACCTTATAAGGAA+GGG 0.567383 7_2:-5900027 Msa1045750:CDS
TAACGTCCATCATAGTATCC+TGG 0.569613 7_2:+5899813 None:intergenic
AAGTCACCAGGATACTATGA+TGG 0.574009 7_2:-5899819 Msa1045750:CDS
CGTTGTCGAATCCGATGATA+CGG 0.579522 7_2:+5899691 None:intergenic
CTGGTGACTTGTGGTTCTCA+CGG 0.595328 7_2:+5899832 None:intergenic
AACTGTAGTCACAGCTGAAG+AGG 0.597051 7_2:+5900426 None:intergenic
GAATCGGTTGCTCCAAACAA+AGG 0.598394 7_2:+5899771 None:intergenic
AAAGATGAGAATGAATTAGG+TGG 0.603747 7_2:+5899346 None:intergenic
ATTCGTTGGACTAAAGTCCA+TGG 0.609669 7_2:-5900365 Msa1045750:CDS
ACTTCCATTACAAGCAATGG+TGG 0.610706 7_2:-5900307 Msa1045750:CDS
TTGCTTGGAATTTGAGACCG+AGG 0.613015 7_2:-5899995 Msa1045750:intron
TGTAACTGGGAAGCCAGCCA+TGG 0.615947 7_2:+5900348 None:intergenic
GTTCTCTGGTCAATGGTGGA+AGG 0.618328 7_2:+5900064 None:intergenic
ATGGACTTTAGTCCAACGAA+TGG 0.623442 7_2:+5900367 None:intergenic
AATTGTTCTCTGGTCAATGG+TGG 0.637841 7_2:+5900060 None:intergenic
TGGAAGAGTAAACTGCATGC+AGG 0.652563 7_2:-5900287 Msa1045750:intron
TGATACGGACAAAGGCATCA+GGG 0.656050 7_2:+5899706 None:intergenic
CGGATTGTACCGAAGAGGCA+CGG 0.664722 7_2:+5900401 None:intergenic
CGCACCGGATTGTACCGAAG+AGG 0.667423 7_2:+5900396 None:intergenic
CTCTTCGGTACAATCCGGTG+CGG 0.678435 7_2:-5900395 Msa1045750:CDS
GAATCCGATGATACGGACAA+AGG 0.687909 7_2:+5899698 None:intergenic
ATGGACGTTACTGGACAATG+TGG 0.742197 7_2:-5899800 Msa1045750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTATTTCCAATATTA+TGG + chr7_2:5899392-5899411 None:intergenic 15.0%
!! ATAAGAGTTAATAAATGAAA+TGG - chr7_2:5900451-5900470 Msa1045750:exon 15.0%
!! TTTCTTTAATATCATACTAT+TGG + chr7_2:5900559-5900578 None:intergenic 15.0%
!!! TTTTTCTATTTCCAATATTA+TGG + chr7_2:5899392-5899411 None:intergenic 15.0%
!! ATAAGAGTTAATAAATGAAA+TGG - chr7_2:5900451-5900470 Msa1045750:exon 15.0%
!! TTTCTTTAATATCATACTAT+TGG + chr7_2:5900559-5900578 None:intergenic 15.0%
!!! ATATTATGGTCTTAATATTG+TGG + chr7_2:5899378-5899397 None:intergenic 20.0%
!! CAATATTAAGACCATAATAT+TGG - chr7_2:5899378-5899397 Msa1045750:three_prime_UTR 20.0%
!!! CTAAAACTTGCTATATATAA+TGG + chr7_2:5899421-5899440 None:intergenic 20.0%
!! CTTGAAACTTTAAATAACAA+AGG - chr7_2:5900531-5900550 Msa1045750:five_prime_UTR 20.0%
!!! ATATTATGGTCTTAATATTG+TGG + chr7_2:5899378-5899397 None:intergenic 20.0%
!! CAATATTAAGACCATAATAT+TGG - chr7_2:5899378-5899397 Msa1045750:three_prime_UTR 20.0%
!!! CTAAAACTTGCTATATATAA+TGG + chr7_2:5899421-5899440 None:intergenic 20.0%
!! CTTGAAACTTTAAATAACAA+AGG - chr7_2:5900531-5900550 Msa1045750:five_prime_UTR 20.0%
! ACTTGTGAACTAAGAAAAAA+TGG - chr7_2:5899475-5899494 Msa1045750:three_prime_UTR 25.0%
!! TATATTTTCATAAGCTCTTC+AGG - chr7_2:5899716-5899735 Msa1045750:CDS 25.0%
! ATAAGCACTTATAGATTCAT+TGG - chr7_2:5899767-5899786 Msa1045750:CDS 25.0%
!! AAGAAGTTGATTACCTTATA+AGG - chr7_2:5899907-5899926 Msa1045750:intron 25.0%
! AGTAAAGTAATATTAGACCT+CGG + chr7_2:5899964-5899983 None:intergenic 25.0%
!!! TGTTTGTTTTGATTTGTACT+TGG - chr7_2:5900060-5900079 Msa1045750:CDS 25.0%
! AGAAAAAAATGTTCTTCCAA+TGG + chr7_2:5900355-5900374 None:intergenic 25.0%
!!! TTATGTCTTCCTTTGTTTTT+TGG - chr7_2:5900393-5900412 Msa1045750:CDS 25.0%
! GATTTCAAAATGCAAATGTA+TGG - chr7_2:5900428-5900447 Msa1045750:CDS 25.0%
! ACTTGTGAACTAAGAAAAAA+TGG - chr7_2:5899475-5899494 Msa1045750:three_prime_UTR 25.0%
!! TATATTTTCATAAGCTCTTC+AGG - chr7_2:5899716-5899735 Msa1045750:CDS 25.0%
! ATAAGCACTTATAGATTCAT+TGG - chr7_2:5899767-5899786 Msa1045750:CDS 25.0%
!! AAGAAGTTGATTACCTTATA+AGG - chr7_2:5899907-5899926 Msa1045750:intron 25.0%
! AGTAAAGTAATATTAGACCT+CGG + chr7_2:5899964-5899983 None:intergenic 25.0%
!!! TGTTTGTTTTGATTTGTACT+TGG - chr7_2:5900060-5900079 Msa1045750:CDS 25.0%
! AGAAAAAAATGTTCTTCCAA+TGG + chr7_2:5900355-5900374 None:intergenic 25.0%
!!! TTATGTCTTCCTTTGTTTTT+TGG - chr7_2:5900393-5900412 Msa1045750:CDS 25.0%
! GATTTCAAAATGCAAATGTA+TGG - chr7_2:5900428-5900447 Msa1045750:CDS 25.0%
GGTCTTAATATTGTGGTAAT+TGG + chr7_2:5899371-5899390 None:intergenic 30.0%
CTTTGTTGATCTTTGTAACT+GGG + chr7_2:5899607-5899626 None:intergenic 30.0%
TCTTTGTTGATCTTTGTAAC+TGG + chr7_2:5899608-5899627 None:intergenic 30.0%
ATTACTTCCATTACAAGCAA+TGG - chr7_2:5899629-5899648 Msa1045750:exon 30.0%
!!! ACAAGTTTGTTAACCCTTTT+GGG - chr7_2:5899799-5899818 Msa1045750:CDS 30.0%
AGTTGATTACCTTATAAGGA+AGG - chr7_2:5899911-5899930 Msa1045750:intron 30.0%
GTTGATTACCTTATAAGGAA+GGG - chr7_2:5899912-5899931 Msa1045750:intron 30.0%
AAGCGAAAACCAAAAAACAA+AGG + chr7_2:5900405-5900424 None:intergenic 30.0%
!!! TGTTTTTTGGTTTTCGCTTT+CGG - chr7_2:5900406-5900425 Msa1045750:CDS 30.0%
!!! ATATGCTGTTTTCCTTGTAA+TGG - chr7_2:5900502-5900521 Msa1045750:five_prime_UTR 30.0%
AAAGATGAGAATGAATTAGG+TGG + chr7_2:5900596-5900615 None:intergenic 30.0%
GGTAAAGATGAGAATGAATT+AGG + chr7_2:5900599-5900618 None:intergenic 30.0%
GGTCTTAATATTGTGGTAAT+TGG + chr7_2:5899371-5899390 None:intergenic 30.0%
CTTTGTTGATCTTTGTAACT+GGG + chr7_2:5899607-5899626 None:intergenic 30.0%
TCTTTGTTGATCTTTGTAAC+TGG + chr7_2:5899608-5899627 None:intergenic 30.0%
ATTACTTCCATTACAAGCAA+TGG - chr7_2:5899629-5899648 Msa1045750:exon 30.0%
!!! ACAAGTTTGTTAACCCTTTT+GGG - chr7_2:5899799-5899818 Msa1045750:CDS 30.0%
AGTTGATTACCTTATAAGGA+AGG - chr7_2:5899911-5899930 Msa1045750:intron 30.0%
GTTGATTACCTTATAAGGAA+GGG - chr7_2:5899912-5899931 Msa1045750:intron 30.0%
AAGCGAAAACCAAAAAACAA+AGG + chr7_2:5900405-5900424 None:intergenic 30.0%
!!! TGTTTTTTGGTTTTCGCTTT+CGG - chr7_2:5900406-5900425 Msa1045750:CDS 30.0%
!!! ATATGCTGTTTTCCTTGTAA+TGG - chr7_2:5900502-5900521 Msa1045750:five_prime_UTR 30.0%
AAAGATGAGAATGAATTAGG+TGG + chr7_2:5900596-5900615 None:intergenic 30.0%
GGTAAAGATGAGAATGAATT+AGG + chr7_2:5900599-5900618 None:intergenic 30.0%
!!! CACAAGTTTGTTAACCCTTT+TGG - chr7_2:5899798-5899817 Msa1045750:CDS 35.0%
! TAACCCTTTTGGGCAATTTT+AGG - chr7_2:5899809-5899828 Msa1045750:CDS 35.0%
ACACCTAAAATTGCCCAAAA+GGG + chr7_2:5899815-5899834 None:intergenic 35.0%
TCAAACTTCTTCTTGCCAAT+AGG + chr7_2:5899843-5899862 None:intergenic 35.0%
! TTCTTTTGCCAATTGTTCTC+TGG + chr7_2:5899892-5899911 None:intergenic 35.0%
ATTACCTTATAAGGAAGGGA+TGG - chr7_2:5899916-5899935 Msa1045750:intron 35.0%
TTACCTTATAAGGAAGGGAT+GGG - chr7_2:5899917-5899936 Msa1045750:intron 35.0%
CTTCAACACTTGAGAAGAAT+CGG + chr7_2:5900187-5900206 None:intergenic 35.0%
CTCAAAATTTAGTAGACTGC+AGG + chr7_2:5900312-5900331 None:intergenic 35.0%
! TTCAAGTTCAAGCCATTACA+AGG + chr7_2:5900517-5900536 None:intergenic 35.0%
!!! CACAAGTTTGTTAACCCTTT+TGG - chr7_2:5899798-5899817 Msa1045750:CDS 35.0%
! TAACCCTTTTGGGCAATTTT+AGG - chr7_2:5899809-5899828 Msa1045750:CDS 35.0%
ACACCTAAAATTGCCCAAAA+GGG + chr7_2:5899815-5899834 None:intergenic 35.0%
TCAAACTTCTTCTTGCCAAT+AGG + chr7_2:5899843-5899862 None:intergenic 35.0%
! TTCTTTTGCCAATTGTTCTC+TGG + chr7_2:5899892-5899911 None:intergenic 35.0%
ATTACCTTATAAGGAAGGGA+TGG - chr7_2:5899916-5899935 Msa1045750:intron 35.0%
TTACCTTATAAGGAAGGGAT+GGG - chr7_2:5899917-5899936 Msa1045750:intron 35.0%
CTTCAACACTTGAGAAGAAT+CGG + chr7_2:5900187-5900206 None:intergenic 35.0%
CTCAAAATTTAGTAGACTGC+AGG + chr7_2:5900312-5900331 None:intergenic 35.0%
! TTCAAGTTCAAGCCATTACA+AGG + chr7_2:5900517-5900536 None:intergenic 35.0%
ATGGACTTTAGTCCAACGAA+TGG + chr7_2:5899575-5899594 None:intergenic 40.0%
ATTCGTTGGACTAAAGTCCA+TGG - chr7_2:5899574-5899593 Msa1045750:three_prime_UTR 40.0%
ACTTCCATTACAAGCAATGG+TGG - chr7_2:5899632-5899651 Msa1045750:exon 40.0%
TCTTCCACCATTGCTTGTAA+TGG + chr7_2:5899639-5899658 None:intergenic 40.0%
CACACCTAAAATTGCCCAAA+AGG + chr7_2:5899816-5899835 None:intergenic 40.0%
!! CTTTTGGGCAATTTTAGGTG+TGG - chr7_2:5899814-5899833 Msa1045750:CDS 40.0%
AACTTCTTCTTGCCAATAGG+AGG + chr7_2:5899840-5899859 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG + chr7_2:5899882-5899901 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG - chr7_2:5899881-5899900 Msa1045750:intron 40.0%
CAAATTTGTGACTGTGACCT+TGG + chr7_2:5900029-5900048 None:intergenic 40.0%
GTACTTGGTTACTTGCAGAA+AGG - chr7_2:5900075-5900094 Msa1045750:CDS 40.0%
AAGTCACCAGGATACTATGA+TGG - chr7_2:5900120-5900139 Msa1045750:intron 40.0%
TAACGTCCATCATAGTATCC+TGG + chr7_2:5900129-5900148 None:intergenic 40.0%
!! GATACTATGATGGACGTTAC+TGG - chr7_2:5900130-5900149 Msa1045750:intron 40.0%
ATGTGGAAGTTGCCTTTGTT+TGG - chr7_2:5900156-5900175 Msa1045750:intron 40.0%
!! CGATTCTTCTCAAGTGTTGA+AGG - chr7_2:5900185-5900204 Msa1045750:intron 40.0%
ATGGACTTTAGTCCAACGAA+TGG + chr7_2:5899575-5899594 None:intergenic 40.0%
ATTCGTTGGACTAAAGTCCA+TGG - chr7_2:5899574-5899593 Msa1045750:three_prime_UTR 40.0%
ACTTCCATTACAAGCAATGG+TGG - chr7_2:5899632-5899651 Msa1045750:exon 40.0%
TCTTCCACCATTGCTTGTAA+TGG + chr7_2:5899639-5899658 None:intergenic 40.0%
CACACCTAAAATTGCCCAAA+AGG + chr7_2:5899816-5899835 None:intergenic 40.0%
!! CTTTTGGGCAATTTTAGGTG+TGG - chr7_2:5899814-5899833 Msa1045750:CDS 40.0%
AACTTCTTCTTGCCAATAGG+AGG + chr7_2:5899840-5899859 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG + chr7_2:5899882-5899901 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG - chr7_2:5899881-5899900 Msa1045750:intron 40.0%
CAAATTTGTGACTGTGACCT+TGG + chr7_2:5900029-5900048 None:intergenic 40.0%
GTACTTGGTTACTTGCAGAA+AGG - chr7_2:5900075-5900094 Msa1045750:CDS 40.0%
AAGTCACCAGGATACTATGA+TGG - chr7_2:5900120-5900139 Msa1045750:intron 40.0%
TAACGTCCATCATAGTATCC+TGG + chr7_2:5900129-5900148 None:intergenic 40.0%
!! GATACTATGATGGACGTTAC+TGG - chr7_2:5900130-5900149 Msa1045750:intron 40.0%
ATGTGGAAGTTGCCTTTGTT+TGG - chr7_2:5900156-5900175 Msa1045750:intron 40.0%
!! CGATTCTTCTCAAGTGTTGA+AGG - chr7_2:5900185-5900204 Msa1045750:intron 40.0%
AGCTGAAGAGGACATGATAG+AGG + chr7_2:5899504-5899523 None:intergenic 45.0%
AACTGTAGTCACAGCTGAAG+AGG + chr7_2:5899516-5899535 None:intergenic 45.0%
TACAGTTAACCGTGCCTCTT+CGG - chr7_2:5899529-5899548 Msa1045750:three_prime_UTR 45.0%
TGGAAGAGTAAACTGCATGC+AGG - chr7_2:5899652-5899671 Msa1045750:CDS 45.0%
!! TTTTAGGTGTGGCCTCCTAT+TGG - chr7_2:5899825-5899844 Msa1045750:CDS 45.0%
GCCAATTGTTCTCTGGTCAA+TGG + chr7_2:5899885-5899904 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG + chr7_2:5899923-5899942 None:intergenic 45.0%
! TTGCTTGGAATTTGAGACCG+AGG - chr7_2:5899944-5899963 Msa1045750:intron 45.0%
CATAGTATCCTGGTGACTTG+TGG + chr7_2:5900119-5900138 None:intergenic 45.0%
ATGGACGTTACTGGACAATG+TGG - chr7_2:5900139-5900158 Msa1045750:intron 45.0%
GAATCGGTTGCTCCAAACAA+AGG + chr7_2:5900171-5900190 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG + chr7_2:5900236-5900255 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG + chr7_2:5900237-5900256 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG - chr7_2:5900237-5900256 Msa1045750:intron 45.0%
GAATCCGATGATACGGACAA+AGG + chr7_2:5900244-5900263 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG + chr7_2:5900251-5900270 None:intergenic 45.0%
TAATCACTCTCTGCTGCCAT+TGG - chr7_2:5900336-5900355 Msa1045750:CDS 45.0%
AGCTGAAGAGGACATGATAG+AGG + chr7_2:5899504-5899523 None:intergenic 45.0%
AACTGTAGTCACAGCTGAAG+AGG + chr7_2:5899516-5899535 None:intergenic 45.0%
TACAGTTAACCGTGCCTCTT+CGG - chr7_2:5899529-5899548 Msa1045750:three_prime_UTR 45.0%
TGGAAGAGTAAACTGCATGC+AGG - chr7_2:5899652-5899671 Msa1045750:CDS 45.0%
!! TTTTAGGTGTGGCCTCCTAT+TGG - chr7_2:5899825-5899844 Msa1045750:CDS 45.0%
GCCAATTGTTCTCTGGTCAA+TGG + chr7_2:5899885-5899904 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG + chr7_2:5899923-5899942 None:intergenic 45.0%
! TTGCTTGGAATTTGAGACCG+AGG - chr7_2:5899944-5899963 Msa1045750:intron 45.0%
CATAGTATCCTGGTGACTTG+TGG + chr7_2:5900119-5900138 None:intergenic 45.0%
ATGGACGTTACTGGACAATG+TGG - chr7_2:5900139-5900158 Msa1045750:intron 45.0%
GAATCGGTTGCTCCAAACAA+AGG + chr7_2:5900171-5900190 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG + chr7_2:5900236-5900255 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG + chr7_2:5900237-5900256 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG - chr7_2:5900237-5900256 Msa1045750:intron 45.0%
GAATCCGATGATACGGACAA+AGG + chr7_2:5900244-5900263 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG + chr7_2:5900251-5900270 None:intergenic 45.0%
TAATCACTCTCTGCTGCCAT+TGG - chr7_2:5900336-5900355 Msa1045750:CDS 45.0%
GTTGGACTAAAGTCCATGGC+TGG - chr7_2:5899578-5899597 Msa1045750:three_prime_UTR 50.0%
! GTTCTCTGGTCAATGGTGGA+AGG + chr7_2:5899878-5899897 None:intergenic 50.0%
!! TCGTTGTTTTGTCGCGACCA+AGG - chr7_2:5900009-5900028 Msa1045750:CDS 50.0%
! CTGGTGACTTGTGGTTCTCA+CGG + chr7_2:5900110-5900129 None:intergenic 50.0%
GTTGGACTAAAGTCCATGGC+TGG - chr7_2:5899578-5899597 Msa1045750:three_prime_UTR 50.0%
! GTTCTCTGGTCAATGGTGGA+AGG + chr7_2:5899878-5899897 None:intergenic 50.0%
!! TCGTTGTTTTGTCGCGACCA+AGG - chr7_2:5900009-5900028 Msa1045750:CDS 50.0%
! CTGGTGACTTGTGGTTCTCA+CGG + chr7_2:5900110-5900129 None:intergenic 50.0%
CGGATTGTACCGAAGAGGCA+CGG + chr7_2:5899541-5899560 None:intergenic 55.0%
CGTGCCTCTTCGGTACAATC+CGG - chr7_2:5899539-5899558 Msa1045750:three_prime_UTR 55.0%
CTCTTCGGTACAATCCGGTG+CGG - chr7_2:5899544-5899563 Msa1045750:three_prime_UTR 55.0%
TGTAACTGGGAAGCCAGCCA+TGG + chr7_2:5899594-5899613 None:intergenic 55.0%
!! GAAGGGATGGGTTGCTTGCT+TGG - chr7_2:5899929-5899948 Msa1045750:intron 55.0%
CGTGAGAACCACAAGTCACC+AGG - chr7_2:5900108-5900127 Msa1045750:CDS 55.0%
CGGATTGTACCGAAGAGGCA+CGG + chr7_2:5899541-5899560 None:intergenic 55.0%
CGTGCCTCTTCGGTACAATC+CGG - chr7_2:5899539-5899558 Msa1045750:three_prime_UTR 55.0%
CTCTTCGGTACAATCCGGTG+CGG - chr7_2:5899544-5899563 Msa1045750:three_prime_UTR 55.0%
TGTAACTGGGAAGCCAGCCA+TGG + chr7_2:5899594-5899613 None:intergenic 55.0%
!! GAAGGGATGGGTTGCTTGCT+TGG - chr7_2:5899929-5899948 Msa1045750:intron 55.0%
CGTGAGAACCACAAGTCACC+AGG - chr7_2:5900108-5900127 Msa1045750:CDS 55.0%
CGCACCGGATTGTACCGAAG+AGG + chr7_2:5899546-5899565 None:intergenic 60.0%
TTCGGTACAATCCGGTGCGG+TGG - chr7_2:5899547-5899566 Msa1045750:three_prime_UTR 60.0%
AACGAATGGAGCCACCGCAC+CGG + chr7_2:5899561-5899580 None:intergenic 60.0%
CGCACCGGATTGTACCGAAG+AGG + chr7_2:5899546-5899565 None:intergenic 60.0%
TTCGGTACAATCCGGTGCGG+TGG - chr7_2:5899547-5899566 Msa1045750:three_prime_UTR 60.0%
AACGAATGGAGCCACCGCAC+CGG + chr7_2:5899561-5899580 None:intergenic 60.0%
GGTGCGGTGGCTCCATTCGT+TGG - chr7_2:5899560-5899579 Msa1045750:three_prime_UTR 65.0%
GGTGCGGTGGCTCCATTCGT+TGG - chr7_2:5899560-5899579 Msa1045750:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 5899341 5900620 5899341 ID=Msa1045750;Name=Msa1045750
chr7_2 mRNA 5899341 5900620 5899341 ID=Msa1045750-mRNA-1;Parent=Msa1045750;Name=Msa1045750-mRNA-1;_AED=0.15;_eAED=0.15;_QI=153|1|1|1|1|1|3|297|181
chr7_2 exon 5899341 5899868 5899341 ID=Msa1045750-mRNA-1:exon:1306;Parent=Msa1045750-mRNA-1
chr7_2 exon 5899996 5900130 5899996 ID=Msa1045750-mRNA-1:exon:1305;Parent=Msa1045750-mRNA-1
chr7_2 exon 5900288 5900620 5900288 ID=Msa1045750-mRNA-1:exon:1304;Parent=Msa1045750-mRNA-1
chr7_2 five_prime_UTR 5900468 5900620 5900468 ID=Msa1045750-mRNA-1:five_prime_utr;Parent=Msa1045750-mRNA-1
chr7_2 CDS 5900288 5900467 5900288 ID=Msa1045750-mRNA-1:cds;Parent=Msa1045750-mRNA-1
chr7_2 CDS 5899996 5900130 5899996 ID=Msa1045750-mRNA-1:cds;Parent=Msa1045750-mRNA-1
chr7_2 CDS 5899638 5899868 5899638 ID=Msa1045750-mRNA-1:cds;Parent=Msa1045750-mRNA-1
chr7_2 three_prime_UTR 5899341 5899637 5899341 ID=Msa1045750-mRNA-1:three_prime_utr;Parent=Msa1045750-mRNA-1
Gene Sequence

>Msa1045750

ATGGCTTCCTCTATCATGTCCTCTTCAGCTGTGACTACAGTTAACCGTGCCTCTTCGGTACAATCCGGTGCGGTGGCTCCATTCGTTGGACTAAAGTCCATGGCTGGCTTCCCAGTTACAAAGATCAACAAAGACATTACTTCCATTACAAGCAATGGTGGAAGAGTAAACTGCATGCAGGTGTGGCCTCCTATTGGCAAGAAGAAGTTTGAGACTCTTTCATACCTTCCACCATTGACCAGAGAACAATTGGCAAAAGAAGTTGATTACCTTATAAGGAAGGGATGGGTTGCTTGCTTGGAATTTGAGACCGAGAAAGGATTTGTGTACCGTGAGAACCACAAGTCACCAGGATACTATGATGGACGTTACTGGACAATGTGGAAGTTGCCTTTGTTTGGAGCAACCGATTCTTCTCAAGTGTTGAAGGAGCTTGATGAAGCTATTGCTGCTTACCCTGATGCCTTTGTCCGTATCATCGGATTCGACAACGTTCGTCAAGTTCAATGCATCAGTTTCATTGCACACACACCTGCAGTCTACTAA

Protein sequence

>Msa1045750

MASSIMSSSAVTTVNRASSVQSGAVAPFVGLKSMAGFPVTKINKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQLAKEVDYLIRKGWVACLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPLFGATDSSQVLKELDEAIAAYPDAFVRIIGFDNVRQVQCISFIAHTPAVY*