Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146740 | XP_013466170.1 | 98.357 | 426 | 6 | 1 | 1 | 425 | 1 | 426 | 0.0 | 856 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146740 | sp|Q8RWB7|PMT12_ARATH | 41.554 | 296 | 153 | 6 | 131 | 423 | 98 | 376 | 1.34e-68 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146740 | A0A072VF27 | 98.357 | 426 | 6 | 1 | 1 | 425 | 1 | 426 | 0.0 | 856 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa0146740 | 0.827454 | 1.550341e-54 | -8.615850e-47 |
| Msa0002710 | Msa0146740 | 0.835312 | 1.805465e-56 | -8.615850e-47 |
| Msa0052870 | Msa0146740 | 0.838423 | 2.900961e-57 | -8.615850e-47 |
| Msa0072900 | Msa0146740 | 0.817682 | 2.905942e-52 | -8.615850e-47 |
| Msa0102000 | Msa0146740 | 0.924561 | 5.978580e-90 | -8.615850e-47 |
| Msa0108390 | Msa0146740 | 0.808987 | 2.363904e-50 | -8.615850e-47 |
| Msa0108410 | Msa0146740 | 0.802418 | 5.664506e-49 | -8.615850e-47 |
| Msa0116790 | Msa0146740 | 0.803041 | 4.211993e-49 | -8.615850e-47 |
| Msa0146740 | Msa0181230 | 0.800707 | 1.270408e-48 | -8.615850e-47 |
| Msa0146740 | Msa0187030 | 0.847845 | 8.935795e-60 | -8.615850e-47 |
| Msa0146740 | Msa0191890 | 0.805384 | 1.370344e-49 | -8.615850e-47 |
| Msa0146740 | Msa0212990 | 0.803321 | 3.686627e-49 | -8.615850e-47 |
| Msa0146740 | Msa0225220 | 0.814127 | 1.804859e-51 | -8.615850e-47 |
| Msa0146740 | Msa0307570 | 0.839349 | 1.671423e-57 | -8.615850e-47 |
| Msa0146740 | Msa0312530 | 0.810846 | 9.410189e-51 | -8.615850e-47 |
| Msa0146740 | Msa0330340 | 0.805948 | 1.043230e-49 | -8.615850e-47 |
| Msa0146740 | Msa0342010 | 0.818920 | 1.523450e-52 | -8.615850e-47 |
| Msa0146740 | Msa0358890 | 0.813562 | 2.404268e-51 | -8.615850e-47 |
| Msa0146740 | Msa0403640 | 0.800073 | 1.709690e-48 | -8.615850e-47 |
| Msa0146740 | Msa0403660 | 0.800318 | 1.524527e-48 | -8.615850e-47 |
| Msa0146740 | Msa0422280 | 0.807971 | 3.895288e-50 | -8.615850e-47 |
| Msa0146740 | Msa0468800 | 0.814546 | 1.457991e-51 | -8.615850e-47 |
| Msa0146740 | Msa0544660 | 0.831344 | 1.760219e-55 | -8.615850e-47 |
| Msa0146740 | Msa0545850 | 0.802183 | 6.331660e-49 | -8.615850e-47 |
| Msa0146740 | Msa0573380 | 0.800791 | 1.221174e-48 | -8.615850e-47 |
| Msa0146740 | Msa0579660 | 0.841353 | 5.001783e-58 | -8.615850e-47 |
| Msa0146740 | Msa0581690 | 0.837443 | 5.182080e-57 | -8.615850e-47 |
| Msa0146740 | Msa0615420 | 0.804026 | 2.631876e-49 | -8.615850e-47 |
| Msa0146740 | Msa0626450 | 0.842303 | 2.807223e-58 | -8.615850e-47 |
| Msa0146740 | Msa0626490 | 0.841307 | 5.143883e-58 | -8.615850e-47 |
| Msa0146740 | Msa0664600 | 0.847864 | 8.829327e-60 | -8.615850e-47 |
| Msa0146740 | Msa0698640 | 0.808215 | 3.455522e-50 | -8.615850e-47 |
| Msa0146740 | Msa0703220 | 0.810832 | 9.473610e-51 | -8.615850e-47 |
| Msa0146740 | Msa0711430 | 0.813746 | 2.190277e-51 | -8.615850e-47 |
| Msa0146740 | Msa0751260 | 0.826144 | 3.186822e-54 | -8.615850e-47 |
| Msa0146740 | Msa0766360 | 0.801310 | 9.562492e-49 | -8.615850e-47 |
| Msa0146740 | Msa0795070 | 0.852361 | 4.854101e-61 | -8.615850e-47 |
| Msa0146740 | Msa0815960 | 0.812327 | 4.483808e-51 | -8.615850e-47 |
| Msa0146740 | Msa0832120 | 0.811935 | 5.458420e-51 | -8.615850e-47 |
| Msa0146740 | Msa0883070 | 0.814854 | 1.246190e-51 | -8.615850e-47 |
| Msa0146740 | Msa0910440 | 0.834719 | 2.547549e-56 | -8.615850e-47 |
| Msa0146740 | Msa0984690 | 0.842769 | 2.112028e-58 | -8.615850e-47 |
| Msa0146740 | Msa0984710 | 0.860983 | 1.411089e-63 | -8.615850e-47 |
| Msa0146740 | Msa1022820 | 0.824740 | 6.852523e-54 | -8.615850e-47 |
| Msa0146740 | Msa1024740 | 0.803381 | 3.582176e-49 | -8.615850e-47 |
| Msa0146740 | Msa1027990 | 0.811104 | 8.271725e-51 | -8.615850e-47 |
| Msa0146740 | Msa1034500 | 0.801701 | 7.952533e-49 | -8.615850e-47 |
| Msa0146740 | Msa1038080 | 0.821822 | 3.291047e-53 | -8.615850e-47 |
| Msa0146740 | Msa1066670 | 0.813772 | 2.161488e-51 | -8.615850e-47 |
| Msa0146740 | Msa1068280 | 0.806617 | 7.541623e-50 | -8.615850e-47 |
| Msa0146740 | Msa1108790 | 0.800600 | 1.335393e-48 | -8.615850e-47 |
| Msa0146740 | Msa1205790 | 0.821685 | 3.540707e-53 | -8.615850e-47 |
| Msa0146740 | Msa1205830 | 0.824315 | 8.629459e-54 | -8.615850e-47 |
| Msa0146740 | Msa1236240 | 0.807877 | 4.078570e-50 | -8.615850e-47 |
| Msa0146740 | Msa1277490 | 0.800855 | 1.184933e-48 | -8.615850e-47 |
| Msa0146740 | Msa1279420 | 0.803339 | 3.654881e-49 | -8.615850e-47 |
| Msa0146740 | Msa1330450 | 0.819547 | 1.097049e-52 | -8.615850e-47 |
| Msa0146740 | Msa1341520 | 0.804327 | 2.278336e-49 | -8.615850e-47 |
| Msa0146740 | Msa1348090 | 0.822160 | 2.748775e-53 | -8.615850e-47 |
| Msa0146740 | Msa1355450 | 0.801365 | 9.317871e-49 | -8.615850e-47 |
| Msa0146740 | Msa1365760 | 0.803473 | 3.428108e-49 | -8.615850e-47 |
| Msa0146740 | Msa1368430 | 0.808614 | 2.840327e-50 | -8.615850e-47 |
| Msa0146740 | Msa1383230 | 0.817219 | 3.693385e-52 | -8.615850e-47 |
| Msa0146740 | Msa1401270 | 0.803864 | 2.844685e-49 | -8.615850e-47 |
| Msa0146740 | Msa1440740 | 0.809866 | 1.530967e-50 | -8.615850e-47 |
| Msa0146740 | Msa1440960 | 0.846632 | 1.922467e-59 | -8.615850e-47 |
| Msa0146740 | Msa1446780 | 0.813040 | 3.130150e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146740 | MtrunA17_Chr1g0156281 | 98.357 | 426 | 6 | 1 | 1 | 425 | 1 | 426 | 0.0 | 856 |
| Msa0146740 | MtrunA17_Chr3g0142401 | 75.935 | 428 | 91 | 5 | 1 | 424 | 1 | 420 | 0.0 | 657 |
| Msa0146740 | MtrunA17_Chr3g0113761 | 70.382 | 314 | 73 | 4 | 29 | 340 | 1 | 296 | 2.63e-157 | 447 |
| Msa0146740 | MtrunA17_Chr8g0367771 | 92.760 | 221 | 7 | 1 | 205 | 425 | 40 | 251 | 6.38e-148 | 420 |
| Msa0146740 | MtrunA17_Chr2g0291531 | 37.383 | 428 | 231 | 8 | 30 | 423 | 34 | 458 | 3.74e-92 | 285 |
| Msa0146740 | MtrunA17_Chr2g0291511 | 38.118 | 425 | 226 | 8 | 33 | 423 | 42 | 463 | 4.09e-92 | 285 |
| Msa0146740 | MtrunA17_Chr5g0434311 | 44.127 | 315 | 162 | 7 | 119 | 424 | 76 | 385 | 9.05e-90 | 277 |
| Msa0146740 | MtrunA17_Chr8g0348141 | 40.483 | 331 | 176 | 7 | 108 | 424 | 164 | 487 | 2.98e-80 | 256 |
| Msa0146740 | MtrunA17_Chr0c01g0489331 | 39.198 | 324 | 180 | 7 | 108 | 425 | 147 | 459 | 1.61e-77 | 248 |
| Msa0146740 | MtrunA17_Chr3g0113501 | 76.515 | 132 | 28 | 2 | 232 | 361 | 43 | 173 | 3.32e-65 | 207 |
| Msa0146740 | MtrunA17_Chr4g0051831 | 33.333 | 414 | 225 | 8 | 19 | 423 | 4 | 375 | 5.39e-65 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146740 | AT3G27230.1 | 72.706 | 425 | 101 | 4 | 1 | 425 | 1 | 410 | 0.0 | 629 |
| Msa0146740 | AT5G40830.1 | 69.484 | 426 | 115 | 5 | 1 | 424 | 1 | 413 | 0.0 | 610 |
| Msa0146740 | AT5G40830.2 | 69.484 | 426 | 115 | 5 | 1 | 424 | 1 | 413 | 0.0 | 610 |
| Msa0146740 | AT5G40830.3 | 63.146 | 426 | 102 | 5 | 1 | 424 | 1 | 373 | 0.0 | 540 |
| Msa0146740 | AT3G05390.1 | 32.969 | 458 | 241 | 12 | 23 | 425 | 16 | 462 | 1.56e-79 | 253 |
| Msa0146740 | AT4G01240.1 | 40.000 | 330 | 178 | 7 | 108 | 424 | 334 | 656 | 1.19e-75 | 248 |
| Msa0146740 | AT1G29790.2 | 41.554 | 296 | 153 | 6 | 131 | 423 | 98 | 376 | 1.36e-69 | 225 |
| Msa0146740 | AT1G29790.1 | 41.554 | 296 | 153 | 6 | 131 | 423 | 98 | 376 | 1.36e-69 | 225 |
Find 65 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCAGAAACTGATCTTAAA+AGG | 0.213539 | 1_4:-6513494 | Msa0146740:CDS |
| TCAAACACATTGTCATAAAA+TGG | 0.248817 | 1_4:+6513020 | None:intergenic |
| TCCAAAACTGTTTCAAAATC+AGG | 0.251936 | 1_4:-6513440 | Msa0146740:CDS |
| GGTTCAGTTTCACTGAAAAT+TGG | 0.255151 | 1_4:-6513992 | Msa0146740:CDS |
| GGAGAGAAAGTTGATAGTTT+TGG | 0.265881 | 1_4:-6512798 | Msa0146740:CDS |
| TTTGATATTGGTGGTGGTTC+AGG | 0.273729 | 1_4:-6513176 | Msa0146740:CDS |
| CTAAAGGAAGTTGATGTCTT+TGG | 0.285958 | 1_4:+6513648 | None:intergenic |
| TGCGGGCCGGTGGTTTGTTT+TGG | 0.291218 | 1_4:-6512914 | Msa0146740:CDS |
| CTGGTGCTTGTCCTGATGAT+TGG | 0.308744 | 1_4:-6513523 | Msa0146740:CDS |
| CAAAGACATCAACTTCCTTT+AGG | 0.332526 | 1_4:-6513647 | Msa0146740:CDS |
| TTTACTTGAGCTTAGATCAT+AGG | 0.343285 | 1_4:-6513046 | Msa0146740:CDS |
| GCAGCAATGAATTCACTAAA+TGG | 0.344054 | 1_4:+6513086 | None:intergenic |
| GGAAATGGTGGAATTAGAAT+AGG | 0.346150 | 1_4:-6513200 | Msa0146740:CDS |
| TTCAGCTCATTTGCAATGTT+GGG | 0.356522 | 1_4:+6513680 | None:intergenic |
| CCATTCTTCAGAAACCAGTT+AGG | 0.362161 | 1_4:-6512746 | Msa0146740:CDS |
| TTCATGAGTTACAAGGCTTC+TGG | 0.364603 | 1_4:-6513542 | Msa0146740:CDS |
| GTTACTGTTGTTGGTGGTTG+TGG | 0.369532 | 1_4:+6513838 | None:intergenic |
| ATTAGAATAGGGTTTGATAT+TGG | 0.369699 | 1_4:-6513188 | Msa0146740:CDS |
| TCTAACCTTCAACCCCTAAC+TGG | 0.373706 | 1_4:+6512732 | None:intergenic |
| GAAATGGTGGAATTAGAATA+GGG | 0.380459 | 1_4:-6513199 | Msa0146740:CDS |
| TTGGATATAAGAAATTGAAA+TGG | 0.387064 | 1_4:-6512827 | Msa0146740:CDS |
| ACAAGGTTGATTGAAAGGTT+TGG | 0.388153 | 1_4:-6512846 | Msa0146740:CDS |
| TTAGGCAAGGATTCAAGAAC+TGG | 0.392044 | 1_4:-6513629 | Msa0146740:CDS |
| TTTCAGCTCATTTGCAATGT+TGG | 0.396349 | 1_4:+6513679 | None:intergenic |
| TGGATATAAGAAATTGAAAT+GGG | 0.396901 | 1_4:-6512826 | Msa0146740:CDS |
| AAGATTAAGGTTACTGTTGT+TGG | 0.413130 | 1_4:+6513829 | None:intergenic |
| AGAGGCTTCCAAAGAGAAAC+AGG | 0.426242 | 1_4:+6513404 | None:intergenic |
| GTTTCTCTTTGGAAGCCTCT+TGG | 0.431268 | 1_4:-6513401 | Msa0146740:CDS |
| CTCTAACAAGGTTGATTGAA+AGG | 0.444624 | 1_4:-6512851 | Msa0146740:CDS |
| TAAGAAATTGAAATGGGTTG+TGG | 0.451047 | 1_4:-6512820 | Msa0146740:CDS |
| CATTCTTCAGAAACCAGTTA+GGG | 0.456557 | 1_4:-6512745 | Msa0146740:CDS |
| AGAAACCAGTTAGGGGTTGA+AGG | 0.456670 | 1_4:-6512737 | None:intergenic |
| AAGAAATTGAAATGGGTTGT+GGG | 0.464176 | 1_4:-6512819 | Msa0146740:CDS |
| AGCATAGAGAGCAAAGAGAT+TGG | 0.472679 | 1_4:+6513889 | None:intergenic |
| AAGGAAGTTGATGTCTTTGG+AGG | 0.474654 | 1_4:+6513651 | None:intergenic |
| GTTCTTGAATCCTTGCCTAA+AGG | 0.475247 | 1_4:+6513632 | None:intergenic |
| TGCATCAACATTAAGAGTAT+TGG | 0.482891 | 1_4:+6513109 | None:intergenic |
| CTCAGAAACTGATCTTAAAA+GGG | 0.485828 | 1_4:-6513493 | Msa0146740:CDS |
| TGGAGGAAAAGCTGAAAAGT+TGG | 0.486068 | 1_4:-6512967 | Msa0146740:CDS |
| AGAATAGGGTTTGATATTGG+TGG | 0.487533 | 1_4:-6513185 | Msa0146740:CDS |
| TGAGCTACTCTCCAATCATC+AGG | 0.494861 | 1_4:+6513512 | None:intergenic |
| AAGAACTGGGATCACTGAAA+TGG | 0.496871 | 1_4:-6513615 | Msa0146740:CDS |
| TGATCTAAGCTCAAGTAAAG+TGG | 0.497485 | 1_4:+6513050 | None:intergenic |
| CCTAACTGGTTTCTGAAGAA+TGG | 0.500091 | 1_4:+6512746 | None:intergenic |
| AAACACCTTCTTCTAGGTAA+AGG | 0.509198 | 1_4:+6513464 | None:intergenic |
| ATAGGGTTTGATATTGGTGG+TGG | 0.514507 | 1_4:-6513182 | Msa0146740:CDS |
| GATTCATGCATCAAGTGCAT+TGG | 0.520145 | 1_4:-6512994 | Msa0146740:CDS |
| TCAAAAGAAACTAGCCCAGA+TGG | 0.525921 | 1_4:-6513744 | Msa0146740:CDS |
| GTTTCACTGAAAATTGGAGA+TGG | 0.532703 | 1_4:-6513986 | Msa0146740:CDS |
| GTCACAGTTCATGAGTTACA+AGG | 0.534645 | 1_4:-6513549 | Msa0146740:CDS |
| TTCCAAAGAGAAACAGGAAA+AGG | 0.536142 | 1_4:+6513410 | None:intergenic |
| ATTAAGGTTACTGTTGTTGG+TGG | 0.540761 | 1_4:+6513832 | None:intergenic |
| ACATCAACTTCCTTTAGGCA+AGG | 0.546386 | 1_4:-6513642 | Msa0146740:CDS |
| TGTTGTTGGTGGTTGTGGTG+TGG | 0.552926 | 1_4:+6513843 | None:intergenic |
| AGTGAATTCATTGCTGCTAG+AGG | 0.555907 | 1_4:-6513080 | Msa0146740:CDS |
| GCATCAAGTGCATTGGATGT+TGG | 0.560273 | 1_4:-6512987 | Msa0146740:CDS |
| GTGAGCCTTTACCTAGAAGA+AGG | 0.567293 | 1_4:-6513469 | Msa0146740:CDS |
| ACTGAAATGGTGTCATCAGT+TGG | 0.572185 | 1_4:-6513602 | Msa0146740:CDS |
| TTAAAAGTGTTATTACCAAG+AGG | 0.586025 | 1_4:+6513386 | None:intergenic |
| TGAGAATCAGAGATTTGTGA+AGG | 0.606302 | 1_4:-6513267 | Msa0146740:CDS |
| ATCAAGCCAAAACAAACCAC+CGG | 0.614460 | 1_4:+6512908 | None:intergenic |
| TCAAGTGCATTGGATGTTGG+AGG | 0.648963 | 1_4:-6512984 | Msa0146740:CDS |
| TAGGCAAGGATTCAAGAACT+GGG | 0.665439 | 1_4:-6513628 | Msa0146740:CDS |
| AGAAGAAACAAACTCTAACA+AGG | 0.679763 | 1_4:-6512863 | Msa0146740:CDS |
| ATTCTTCAGAAACCAGTTAG+GGG | 0.694148 | 1_4:-6512744 | Msa0146740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAGTAAAAATGATTTTT+TGG | - | chr1_4:6513492-6513511 | Msa0146740:CDS | 10.0% |
| !!! | AAAAAGTAAAAATGATTTTT+TGG | - | chr1_4:6513492-6513511 | Msa0146740:CDS | 10.0% |
| !!! | TTGGTAATAACACTTTTAAT+TGG | - | chr1_4:6513353-6513372 | Msa0146740:CDS | 20.0% |
| !!! | TTGTGTTAATTGTTTTGATT+TGG | - | chr1_4:6513432-6513451 | Msa0146740:CDS | 20.0% |
| !! | TTGGATATAAGAAATTGAAA+TGG | - | chr1_4:6513908-6513927 | Msa0146740:CDS | 20.0% |
| !! | TGGATATAAGAAATTGAAAT+GGG | - | chr1_4:6513909-6513928 | Msa0146740:CDS | 20.0% |
| !!! | TTGGTAATAACACTTTTAAT+TGG | - | chr1_4:6513353-6513372 | Msa0146740:CDS | 20.0% |
| !!! | TTGTGTTAATTGTTTTGATT+TGG | - | chr1_4:6513432-6513451 | Msa0146740:CDS | 20.0% |
| !! | TTGGATATAAGAAATTGAAA+TGG | - | chr1_4:6513908-6513927 | Msa0146740:CDS | 20.0% |
| !! | TGGATATAAGAAATTGAAAT+GGG | - | chr1_4:6513909-6513928 | Msa0146740:CDS | 20.0% |
| !!! | AGATGTTTTTGTGAAGATTA+AGG | + | chr1_4:6512922-6512941 | None:intergenic | 25.0% |
| !!! | TTAAAAGTGTTATTACCAAG+AGG | + | chr1_4:6513352-6513371 | None:intergenic | 25.0% |
| !!! | AATAACACTTTTAATTGGAG+TGG | - | chr1_4:6513358-6513377 | Msa0146740:CDS | 25.0% |
| !!! | AAGAGTTTTGAATGTTTGAA+AGG | - | chr1_4:6513391-6513410 | Msa0146740:CDS | 25.0% |
| !!! | AATTGTTTTGATTTGGTTAG+TGG | - | chr1_4:6513439-6513458 | Msa0146740:CDS | 25.0% |
| ! | ATTAGAATAGGGTTTGATAT+TGG | - | chr1_4:6513547-6513566 | Msa0146740:CDS | 25.0% |
| ! | TCAAACACATTGTCATAAAA+TGG | + | chr1_4:6513718-6513737 | None:intergenic | 25.0% |
| !!! | AGATGTTTTTGTGAAGATTA+AGG | + | chr1_4:6512922-6512941 | None:intergenic | 25.0% |
| !!! | TTAAAAGTGTTATTACCAAG+AGG | + | chr1_4:6513352-6513371 | None:intergenic | 25.0% |
| !!! | AATAACACTTTTAATTGGAG+TGG | - | chr1_4:6513358-6513377 | Msa0146740:CDS | 25.0% |
| !!! | AAGAGTTTTGAATGTTTGAA+AGG | - | chr1_4:6513391-6513410 | Msa0146740:CDS | 25.0% |
| !!! | AATTGTTTTGATTTGGTTAG+TGG | - | chr1_4:6513439-6513458 | Msa0146740:CDS | 25.0% |
| ! | ATTAGAATAGGGTTTGATAT+TGG | - | chr1_4:6513547-6513566 | Msa0146740:CDS | 25.0% |
| ! | TCAAACACATTGTCATAAAA+TGG | + | chr1_4:6513718-6513737 | None:intergenic | 25.0% |
| AAGATTAAGGTTACTGTTGT+TGG | + | chr1_4:6512909-6512928 | None:intergenic | 30.0% | |
| CTCAGAAACTGATCTTAAAA+GGG | - | chr1_4:6513242-6513261 | Msa0146740:CDS | 30.0% | |
| TCCAAAACTGTTTCAAAATC+AGG | - | chr1_4:6513295-6513314 | Msa0146740:CDS | 30.0% | |
| !!! | ACCTGATTTTGAAACAGTTT+TGG | + | chr1_4:6513299-6513318 | None:intergenic | 30.0% |
| !!! | GTTGATGATGTTTTAGCATT+AGG | - | chr1_4:6513514-6513533 | Msa0146740:CDS | 30.0% |
| !!! | GATGTTTTAGCATTAGGAAA+TGG | - | chr1_4:6513520-6513539 | Msa0146740:CDS | 30.0% |
| ! | GAAATGGTGGAATTAGAATA+GGG | - | chr1_4:6513536-6513555 | Msa0146740:CDS | 30.0% |
| ! | TGCATCAACATTAAGAGTAT+TGG | + | chr1_4:6513629-6513648 | None:intergenic | 30.0% |
| TTTACTTGAGCTTAGATCAT+AGG | - | chr1_4:6513689-6513708 | Msa0146740:CDS | 30.0% | |
| AGAAGAAACAAACTCTAACA+AGG | - | chr1_4:6513872-6513891 | Msa0146740:CDS | 30.0% | |
| !! | TAAGAAATTGAAATGGGTTG+TGG | - | chr1_4:6513915-6513934 | Msa0146740:CDS | 30.0% |
| !! | AAGAAATTGAAATGGGTTGT+GGG | - | chr1_4:6513916-6513935 | Msa0146740:CDS | 30.0% |
| !!! | AAAGTTGATAGTTTTGGATC+AGG | - | chr1_4:6513943-6513962 | Msa0146740:CDS | 30.0% |
| AAGATTAAGGTTACTGTTGT+TGG | + | chr1_4:6512909-6512928 | None:intergenic | 30.0% | |
| CTCAGAAACTGATCTTAAAA+GGG | - | chr1_4:6513242-6513261 | Msa0146740:CDS | 30.0% | |
| TCCAAAACTGTTTCAAAATC+AGG | - | chr1_4:6513295-6513314 | Msa0146740:CDS | 30.0% | |
| !!! | ACCTGATTTTGAAACAGTTT+TGG | + | chr1_4:6513299-6513318 | None:intergenic | 30.0% |
| !!! | GTTGATGATGTTTTAGCATT+AGG | - | chr1_4:6513514-6513533 | Msa0146740:CDS | 30.0% |
| !!! | GATGTTTTAGCATTAGGAAA+TGG | - | chr1_4:6513520-6513539 | Msa0146740:CDS | 30.0% |
| ! | GAAATGGTGGAATTAGAATA+GGG | - | chr1_4:6513536-6513555 | Msa0146740:CDS | 30.0% |
| ! | TGCATCAACATTAAGAGTAT+TGG | + | chr1_4:6513629-6513648 | None:intergenic | 30.0% |
| TTTACTTGAGCTTAGATCAT+AGG | - | chr1_4:6513689-6513708 | Msa0146740:CDS | 30.0% | |
| AGAAGAAACAAACTCTAACA+AGG | - | chr1_4:6513872-6513891 | Msa0146740:CDS | 30.0% | |
| !! | TAAGAAATTGAAATGGGTTG+TGG | - | chr1_4:6513915-6513934 | Msa0146740:CDS | 30.0% |
| !! | AAGAAATTGAAATGGGTTGT+GGG | - | chr1_4:6513916-6513935 | Msa0146740:CDS | 30.0% |
| !!! | AAAGTTGATAGTTTTGGATC+AGG | - | chr1_4:6513943-6513962 | Msa0146740:CDS | 30.0% |
| GGTTCAGTTTCACTGAAAAT+TGG | - | chr1_4:6512743-6512762 | Msa0146740:CDS | 35.0% | |
| GTTTCACTGAAAATTGGAGA+TGG | - | chr1_4:6512749-6512768 | Msa0146740:CDS | 35.0% | |
| ATTAAGGTTACTGTTGTTGG+TGG | + | chr1_4:6512906-6512925 | None:intergenic | 35.0% | |
| TCTTCACAAAAACATCTCTC+TGG | - | chr1_4:6512925-6512944 | Msa0146740:CDS | 35.0% | |
| !!! | AAGAAGCTGTTTTTCCATCT+GGG | + | chr1_4:6513008-6513027 | None:intergenic | 35.0% |
| TTCAGCTCATTTGCAATGTT+GGG | + | chr1_4:6513058-6513077 | None:intergenic | 35.0% | |
| TTTCAGCTCATTTGCAATGT+TGG | + | chr1_4:6513059-6513078 | None:intergenic | 35.0% | |
| !! | CTAAAGGAAGTTGATGTCTT+TGG | + | chr1_4:6513090-6513109 | None:intergenic | 35.0% |
| CAAAGACATCAACTTCCTTT+AGG | - | chr1_4:6513088-6513107 | Msa0146740:CDS | 35.0% | |
| GCTCAGAAACTGATCTTAAA+AGG | - | chr1_4:6513241-6513260 | Msa0146740:CDS | 35.0% | |
| AAACACCTTCTTCTAGGTAA+AGG | + | chr1_4:6513274-6513293 | None:intergenic | 35.0% | |
| TTGGAAAAACACCTTCTTCT+AGG | + | chr1_4:6513280-6513299 | None:intergenic | 35.0% | |
| !! | TTCCTTTTCCTGTTTCTCTT+TGG | - | chr1_4:6513323-6513342 | Msa0146740:CDS | 35.0% |
| TTCCAAAGAGAAACAGGAAA+AGG | + | chr1_4:6513328-6513347 | None:intergenic | 35.0% | |
| !!! | TGTTTTGATTTGGTTAGTGG+TGG | - | chr1_4:6513442-6513461 | Msa0146740:CDS | 35.0% |
| TGAGAATCAGAGATTTGTGA+AGG | - | chr1_4:6513468-6513487 | Msa0146740:CDS | 35.0% | |
| !! | GTTTTAGCATTAGGAAATGG+TGG | - | chr1_4:6513523-6513542 | Msa0146740:CDS | 35.0% |
| ! | GGAAATGGTGGAATTAGAAT+AGG | - | chr1_4:6513535-6513554 | Msa0146740:CDS | 35.0% |
| AGAATAGGGTTTGATATTGG+TGG | - | chr1_4:6513550-6513569 | Msa0146740:CDS | 35.0% | |
| GCAGCAATGAATTCACTAAA+TGG | + | chr1_4:6513652-6513671 | None:intergenic | 35.0% | |
| TGATCTAAGCTCAAGTAAAG+TGG | + | chr1_4:6513688-6513707 | None:intergenic | 35.0% | |
| ! | TTGATATCGATCGAGTTTTG+CGG | - | chr1_4:6513803-6513822 | Msa0146740:CDS | 35.0% |
| ! | CTCTAACAAGGTTGATTGAA+AGG | - | chr1_4:6513884-6513903 | Msa0146740:CDS | 35.0% |
| ! | ACAAGGTTGATTGAAAGGTT+TGG | - | chr1_4:6513889-6513908 | Msa0146740:CDS | 35.0% |
| !!! | GGAGAGAAAGTTGATAGTTT+TGG | - | chr1_4:6513937-6513956 | Msa0146740:CDS | 35.0% |
| CATTCTTCAGAAACCAGTTA+GGG | - | chr1_4:6513990-6514009 | Msa0146740:CDS | 35.0% | |
| ATTCTTCAGAAACCAGTTAG+GGG | - | chr1_4:6513991-6514010 | Msa0146740:CDS | 35.0% | |
| GGTTCAGTTTCACTGAAAAT+TGG | - | chr1_4:6512743-6512762 | Msa0146740:CDS | 35.0% | |
| GTTTCACTGAAAATTGGAGA+TGG | - | chr1_4:6512749-6512768 | Msa0146740:CDS | 35.0% | |
| ATTAAGGTTACTGTTGTTGG+TGG | + | chr1_4:6512906-6512925 | None:intergenic | 35.0% | |
| TCTTCACAAAAACATCTCTC+TGG | - | chr1_4:6512925-6512944 | Msa0146740:CDS | 35.0% | |
| !!! | AAGAAGCTGTTTTTCCATCT+GGG | + | chr1_4:6513008-6513027 | None:intergenic | 35.0% |
| TTCAGCTCATTTGCAATGTT+GGG | + | chr1_4:6513058-6513077 | None:intergenic | 35.0% | |
| TTTCAGCTCATTTGCAATGT+TGG | + | chr1_4:6513059-6513078 | None:intergenic | 35.0% | |
| !! | CTAAAGGAAGTTGATGTCTT+TGG | + | chr1_4:6513090-6513109 | None:intergenic | 35.0% |
| CAAAGACATCAACTTCCTTT+AGG | - | chr1_4:6513088-6513107 | Msa0146740:CDS | 35.0% | |
| GCTCAGAAACTGATCTTAAA+AGG | - | chr1_4:6513241-6513260 | Msa0146740:CDS | 35.0% | |
| AAACACCTTCTTCTAGGTAA+AGG | + | chr1_4:6513274-6513293 | None:intergenic | 35.0% | |
| TTGGAAAAACACCTTCTTCT+AGG | + | chr1_4:6513280-6513299 | None:intergenic | 35.0% | |
| !! | TTCCTTTTCCTGTTTCTCTT+TGG | - | chr1_4:6513323-6513342 | Msa0146740:CDS | 35.0% |
| TTCCAAAGAGAAACAGGAAA+AGG | + | chr1_4:6513328-6513347 | None:intergenic | 35.0% | |
| !!! | TGTTTTGATTTGGTTAGTGG+TGG | - | chr1_4:6513442-6513461 | Msa0146740:CDS | 35.0% |
| TGAGAATCAGAGATTTGTGA+AGG | - | chr1_4:6513468-6513487 | Msa0146740:CDS | 35.0% | |
| !! | GTTTTAGCATTAGGAAATGG+TGG | - | chr1_4:6513523-6513542 | Msa0146740:CDS | 35.0% |
| ! | GGAAATGGTGGAATTAGAAT+AGG | - | chr1_4:6513535-6513554 | Msa0146740:CDS | 35.0% |
| AGAATAGGGTTTGATATTGG+TGG | - | chr1_4:6513550-6513569 | Msa0146740:CDS | 35.0% | |
| GCAGCAATGAATTCACTAAA+TGG | + | chr1_4:6513652-6513671 | None:intergenic | 35.0% | |
| TGATCTAAGCTCAAGTAAAG+TGG | + | chr1_4:6513688-6513707 | None:intergenic | 35.0% | |
| ! | TTGATATCGATCGAGTTTTG+CGG | - | chr1_4:6513803-6513822 | Msa0146740:CDS | 35.0% |
| ! | CTCTAACAAGGTTGATTGAA+AGG | - | chr1_4:6513884-6513903 | Msa0146740:CDS | 35.0% |
| ! | ACAAGGTTGATTGAAAGGTT+TGG | - | chr1_4:6513889-6513908 | Msa0146740:CDS | 35.0% |
| !!! | GGAGAGAAAGTTGATAGTTT+TGG | - | chr1_4:6513937-6513956 | Msa0146740:CDS | 35.0% |
| CATTCTTCAGAAACCAGTTA+GGG | - | chr1_4:6513990-6514009 | Msa0146740:CDS | 35.0% | |
| ATTCTTCAGAAACCAGTTAG+GGG | - | chr1_4:6513991-6514010 | Msa0146740:CDS | 35.0% | |
| AGCATAGAGAGCAAAGAGAT+TGG | + | chr1_4:6512849-6512868 | None:intergenic | 40.0% | |
| TCAAAAGAAACTAGCCCAGA+TGG | - | chr1_4:6512991-6513010 | Msa0146740:CDS | 40.0% | |
| !!! | CAAGAAGCTGTTTTTCCATC+TGG | + | chr1_4:6513009-6513028 | None:intergenic | 40.0% |
| CAGATGGAAAAACAGCTTCT+TGG | - | chr1_4:6513007-6513026 | Msa0146740:CDS | 40.0% | |
| !! | AAGGAAGTTGATGTCTTTGG+AGG | + | chr1_4:6513087-6513106 | None:intergenic | 40.0% |
| ACATCAACTTCCTTTAGGCA+AGG | - | chr1_4:6513093-6513112 | Msa0146740:CDS | 40.0% | |
| GTTCTTGAATCCTTGCCTAA+AGG | + | chr1_4:6513106-6513125 | None:intergenic | 40.0% | |
| TTAGGCAAGGATTCAAGAAC+TGG | - | chr1_4:6513106-6513125 | Msa0146740:CDS | 40.0% | |
| TAGGCAAGGATTCAAGAACT+GGG | - | chr1_4:6513107-6513126 | Msa0146740:CDS | 40.0% | |
| AAGAACTGGGATCACTGAAA+TGG | - | chr1_4:6513120-6513139 | Msa0146740:CDS | 40.0% | |
| !! | ACTGAAATGGTGTCATCAGT+TGG | - | chr1_4:6513133-6513152 | Msa0146740:CDS | 40.0% |
| GTCACAGTTCATGAGTTACA+AGG | - | chr1_4:6513186-6513205 | Msa0146740:CDS | 40.0% | |
| TTCATGAGTTACAAGGCTTC+TGG | - | chr1_4:6513193-6513212 | Msa0146740:CDS | 40.0% | |
| ATAGGGTTTGATATTGGTGG+TGG | - | chr1_4:6513553-6513572 | Msa0146740:CDS | 40.0% | |
| !! | TTTGATATTGGTGGTGGTTC+AGG | - | chr1_4:6513559-6513578 | Msa0146740:CDS | 40.0% |
| AGTGAATTCATTGCTGCTAG+AGG | - | chr1_4:6513655-6513674 | Msa0146740:CDS | 40.0% | |
| GATTCATGCATCAAGTGCAT+TGG | - | chr1_4:6513741-6513760 | Msa0146740:CDS | 40.0% | |
| TGGAGGAAAAGCTGAAAAGT+TGG | - | chr1_4:6513768-6513787 | Msa0146740:CDS | 40.0% | |
| ! | TGATATCGATCGAGTTTTGC+GGG | - | chr1_4:6513804-6513823 | Msa0146740:CDS | 40.0% |
| ATCAAGCCAAAACAAACCAC+CGG | + | chr1_4:6513830-6513849 | None:intergenic | 40.0% | |
| ! | CCTAACTGGTTTCTGAAGAA+TGG | + | chr1_4:6513992-6514011 | None:intergenic | 40.0% |
| CCATTCTTCAGAAACCAGTT+AGG | - | chr1_4:6513989-6514008 | Msa0146740:CDS | 40.0% | |
| AGCATAGAGAGCAAAGAGAT+TGG | + | chr1_4:6512849-6512868 | None:intergenic | 40.0% | |
| TCAAAAGAAACTAGCCCAGA+TGG | - | chr1_4:6512991-6513010 | Msa0146740:CDS | 40.0% | |
| !!! | CAAGAAGCTGTTTTTCCATC+TGG | + | chr1_4:6513009-6513028 | None:intergenic | 40.0% |
| CAGATGGAAAAACAGCTTCT+TGG | - | chr1_4:6513007-6513026 | Msa0146740:CDS | 40.0% | |
| !! | AAGGAAGTTGATGTCTTTGG+AGG | + | chr1_4:6513087-6513106 | None:intergenic | 40.0% |
| ACATCAACTTCCTTTAGGCA+AGG | - | chr1_4:6513093-6513112 | Msa0146740:CDS | 40.0% | |
| GTTCTTGAATCCTTGCCTAA+AGG | + | chr1_4:6513106-6513125 | None:intergenic | 40.0% | |
| TTAGGCAAGGATTCAAGAAC+TGG | - | chr1_4:6513106-6513125 | Msa0146740:CDS | 40.0% | |
| TAGGCAAGGATTCAAGAACT+GGG | - | chr1_4:6513107-6513126 | Msa0146740:CDS | 40.0% | |
| AAGAACTGGGATCACTGAAA+TGG | - | chr1_4:6513120-6513139 | Msa0146740:CDS | 40.0% | |
| !! | ACTGAAATGGTGTCATCAGT+TGG | - | chr1_4:6513133-6513152 | Msa0146740:CDS | 40.0% |
| GTCACAGTTCATGAGTTACA+AGG | - | chr1_4:6513186-6513205 | Msa0146740:CDS | 40.0% | |
| TTCATGAGTTACAAGGCTTC+TGG | - | chr1_4:6513193-6513212 | Msa0146740:CDS | 40.0% | |
| ATAGGGTTTGATATTGGTGG+TGG | - | chr1_4:6513553-6513572 | Msa0146740:CDS | 40.0% | |
| !! | TTTGATATTGGTGGTGGTTC+AGG | - | chr1_4:6513559-6513578 | Msa0146740:CDS | 40.0% |
| AGTGAATTCATTGCTGCTAG+AGG | - | chr1_4:6513655-6513674 | Msa0146740:CDS | 40.0% | |
| GATTCATGCATCAAGTGCAT+TGG | - | chr1_4:6513741-6513760 | Msa0146740:CDS | 40.0% | |
| TGGAGGAAAAGCTGAAAAGT+TGG | - | chr1_4:6513768-6513787 | Msa0146740:CDS | 40.0% | |
| ! | TGATATCGATCGAGTTTTGC+GGG | - | chr1_4:6513804-6513823 | Msa0146740:CDS | 40.0% |
| ATCAAGCCAAAACAAACCAC+CGG | + | chr1_4:6513830-6513849 | None:intergenic | 40.0% | |
| ! | CCTAACTGGTTTCTGAAGAA+TGG | + | chr1_4:6513992-6514011 | None:intergenic | 40.0% |
| CCATTCTTCAGAAACCAGTT+AGG | - | chr1_4:6513989-6514008 | Msa0146740:CDS | 40.0% | |
| !!! | GGTTGTGGTGTGGTTTTTTG+AGG | + | chr1_4:6512885-6512904 | None:intergenic | 45.0% |
| !! | GTTACTGTTGTTGGTGGTTG+TGG | + | chr1_4:6512900-6512919 | None:intergenic | 45.0% |
| TGAGCTACTCTCCAATCATC+AGG | + | chr1_4:6513226-6513245 | None:intergenic | 45.0% | |
| GTGAGCCTTTACCTAGAAGA+AGG | - | chr1_4:6513266-6513285 | Msa0146740:CDS | 45.0% | |
| AGAGGCTTCCAAAGAGAAAC+AGG | + | chr1_4:6513334-6513353 | None:intergenic | 45.0% | |
| ! | GTTTCTCTTTGGAAGCCTCT+TGG | - | chr1_4:6513334-6513353 | Msa0146740:CDS | 45.0% |
| GCATCAAGTGCATTGGATGT+TGG | - | chr1_4:6513748-6513767 | Msa0146740:CDS | 45.0% | |
| TCAAGTGCATTGGATGTTGG+AGG | - | chr1_4:6513751-6513770 | Msa0146740:CDS | 45.0% | |
| !!! | GGTTGTGGTGTGGTTTTTTG+AGG | + | chr1_4:6512885-6512904 | None:intergenic | 45.0% |
| !! | GTTACTGTTGTTGGTGGTTG+TGG | + | chr1_4:6512900-6512919 | None:intergenic | 45.0% |
| TGAGCTACTCTCCAATCATC+AGG | + | chr1_4:6513226-6513245 | None:intergenic | 45.0% | |
| GTGAGCCTTTACCTAGAAGA+AGG | - | chr1_4:6513266-6513285 | Msa0146740:CDS | 45.0% | |
| AGAGGCTTCCAAAGAGAAAC+AGG | + | chr1_4:6513334-6513353 | None:intergenic | 45.0% | |
| ! | GTTTCTCTTTGGAAGCCTCT+TGG | - | chr1_4:6513334-6513353 | Msa0146740:CDS | 45.0% |
| GCATCAAGTGCATTGGATGT+TGG | - | chr1_4:6513748-6513767 | Msa0146740:CDS | 45.0% | |
| TCAAGTGCATTGGATGTTGG+AGG | - | chr1_4:6513751-6513770 | Msa0146740:CDS | 45.0% | |
| !! | TGTTGTTGGTGGTTGTGGTG+TGG | + | chr1_4:6512895-6512914 | None:intergenic | 50.0% |
| CTGGTGCTTGTCCTGATGAT+TGG | - | chr1_4:6513212-6513231 | Msa0146740:CDS | 50.0% | |
| !! | TGTTGTTGGTGGTTGTGGTG+TGG | + | chr1_4:6512895-6512914 | None:intergenic | 50.0% |
| CTGGTGCTTGTCCTGATGAT+TGG | - | chr1_4:6513212-6513231 | Msa0146740:CDS | 50.0% | |
| ! | ATCGATCGAGTTTTGCGGGC+CGG | - | chr1_4:6513808-6513827 | Msa0146740:CDS | 55.0% |
| ! | ATCGATCGAGTTTTGCGGGC+CGG | - | chr1_4:6513808-6513827 | Msa0146740:CDS | 55.0% |
| !!! | TGCGGGCCGGTGGTTTGTTT+TGG | - | chr1_4:6513821-6513840 | Msa0146740:CDS | 60.0% |
| !!! | TGCGGGCCGGTGGTTTGTTT+TGG | - | chr1_4:6513821-6513840 | Msa0146740:CDS | 60.0% |
| ! | GATCGAGTTTTGCGGGCCGG+TGG | - | chr1_4:6513811-6513830 | Msa0146740:CDS | 65.0% |
| ! | GATCGAGTTTTGCGGGCCGG+TGG | - | chr1_4:6513811-6513830 | Msa0146740:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 6512740 | 6514017 | 6512740 | ID=Msa0146740;Name=Msa0146740 |
| chr1_4 | mRNA | 6512740 | 6514017 | 6512740 | ID=Msa0146740-mRNA-1;Parent=Msa0146740;Name=Msa0146740-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|-1|0|1|-1|1|1|0|425 |
| chr1_4 | exon | 6512740 | 6514017 | 6512740 | ID=Msa0146740-mRNA-1:exon:2888;Parent=Msa0146740-mRNA-1 |
| chr1_4 | CDS | 6512740 | 6514017 | 6512740 | ID=Msa0146740-mRNA-1:cds;Parent=Msa0146740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
