Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0688500 | Msa1084110 | 0.806198 | 9.243016e-50 | -8.615850e-47 |
| Msa0778930 | Msa1084110 | 0.802523 | 5.389294e-49 | -8.615850e-47 |
| Msa0134130 | Msa1084110 | 0.803364 | 3.610963e-49 | -8.615850e-47 |
| Msa0219190 | Msa1084110 | 0.816746 | 4.716661e-52 | -8.615850e-47 |
| Msa1037900 | Msa1084110 | 0.805382 | 1.371469e-49 | -8.615850e-47 |
| Msa1041530 | Msa1084110 | 0.820860 | 5.487746e-53 | -8.615850e-47 |
| Msa1081570 | Msa1084110 | 0.808757 | 2.647929e-50 | -8.615850e-47 |
| Msa1084110 | Msa1127140 | 0.822353 | 2.478634e-53 | -8.615850e-47 |
| Msa1084110 | Msa1129960 | 0.804785 | 1.828592e-49 | -8.615850e-47 |
| Msa1084110 | Msa1166400 | 0.805913 | 1.061149e-49 | -8.615850e-47 |
| Msa1084110 | Msa1228610 | 0.800246 | 1.576937e-48 | -8.615850e-47 |
| Msa1084110 | Msa1420060 | 0.840688 | 7.478865e-58 | -8.615850e-47 |
| Msa0298240 | Msa1084110 | 0.821558 | 3.787007e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATCATTGATGGCATTTC+TGG | 0.068624 | 7_2:-84394575 | Msa1084110:CDS |
| TCAAGATTCGACGTCGTTTC+TGG | 0.133269 | 7_2:-84393591 | Msa1084110:CDS |
| CAGCTTTGGTAACTTTCTTC+TGG | 0.149765 | 7_2:+84394332 | None:intergenic |
| TTGATGGCATTTCTGGATTT+AGG | 0.162533 | 7_2:-84394568 | Msa1084110:CDS |
| CATTATGATGATCTTCATTC+TGG | 0.272912 | 7_2:-84393640 | Msa1084110:CDS |
| TCTTGACAGCATTGCGCCTT+TGG | 0.294483 | 7_2:+84393608 | None:intergenic |
| TGATGGCATTTCTGGATTTA+GGG | 0.301787 | 7_2:-84394567 | Msa1084110:CDS |
| GGTCAAGGTGCTGCTGGAGG+TGG | 0.372392 | 7_2:-84393537 | Msa1084110:CDS |
| CGTGAGAAATCTATCATTGA+TGG | 0.374107 | 7_2:-84394584 | Msa1084110:CDS |
| TATAACGACCTTACTTGAAC+AGG | 0.387253 | 7_2:+84394497 | None:intergenic |
| AGCTTTGGTAACTTTCTTCT+GGG | 0.392647 | 7_2:+84394333 | None:intergenic |
| AAGGGTGGTCAAGGTGCTGC+TGG | 0.401392 | 7_2:-84393543 | Msa1084110:CDS |
| TCGTTTCTGGATGCGTGTAT+TGG | 0.415792 | 7_2:-84393578 | Msa1084110:CDS |
| CTCCAGAGTGTCCACAGCTT+TGG | 0.436133 | 7_2:+84394318 | None:intergenic |
| TAAGAGATCCTGTTCAAGTA+AGG | 0.446136 | 7_2:-84394505 | Msa1084110:intron |
| ACTGCTGGTCAAGGTGTTTG+AGG | 0.513663 | 7_2:-84393501 | None:intergenic |
| GGTCAAGGTCAAGGTACTGC+TGG | 0.516094 | 7_2:-84393516 | Msa1084110:CDS |
| GGTGGTCAAGGTGCTGCTGG+AGG | 0.518217 | 7_2:-84393540 | Msa1084110:CDS |
| GTATTGGATGCAGCTGGTCA+AGG | 0.520374 | 7_2:-84393562 | Msa1084110:CDS |
| TACCAAAGCTGTGGACACTC+TGG | 0.526948 | 7_2:-84394320 | Msa1084110:CDS |
| GGTGCTGCTGGAGGTGGTCA+AGG | 0.528917 | 7_2:-84393531 | Msa1084110:CDS |
| CAGCTGGTCAAGGGTGGTCA+AGG | 0.533189 | 7_2:-84393552 | Msa1084110:CDS |
| GAGTCTGCAGTGGAACAAGC+TGG | 0.534339 | 7_2:-84394298 | Msa1084110:CDS |
| GAATGTGCTCACGAACAAGC+TGG | 0.537737 | 7_2:+84394534 | None:intergenic |
| CAATGAGAAGAAAATGCAGC+TGG | 0.545893 | 7_2:-84398663 | None:intergenic |
| TCATCATAATGAATATGCCT+CGG | 0.549915 | 7_2:+84393652 | None:intergenic |
| GCTGGAGGTGGTCAAGGTCA+AGG | 0.557870 | 7_2:-84393525 | Msa1084110:CDS |
| CATCATAATGAATATGCCTC+GGG | 0.575459 | 7_2:+84393653 | None:intergenic |
| GGTCAAGGTACTGCTGGTCA+AGG | 0.581410 | 7_2:-84393510 | Msa1084110:CDS |
| TATTGGATGCAGCTGGTCAA+GGG | 0.596641 | 7_2:-84393561 | Msa1084110:CDS |
| ATTCTGGAAGCGCAGTCCAA+AGG | 0.598751 | 7_2:-84393624 | Msa1084110:CDS |
| GCTCTACGTGCACGCACATG+CGG | 0.599854 | 7_2:+84394620 | None:intergenic |
| ATGCGTGTATTGGATGCAGC+TGG | 0.612687 | 7_2:-84393568 | Msa1084110:CDS |
| GAAGAAAGTTACCAAAGCTG+TGG | 0.625764 | 7_2:-84394329 | Msa1084110:CDS |
| GCAGCTGGCAATATCACCAA+AGG | 0.635534 | 7_2:-84398648 | Msa1084110:intron |
| GGACACTCTGGAGTCTGCAG+TGG | 0.655006 | 7_2:-84394308 | Msa1084110:CDS |
| TCATTCTTTACAGAGACCCG+AGG | 0.662180 | 7_2:-84393669 | Msa1084110:intron |
| TGGATGCAGCTGGTCAAGGG+TGG | 0.665274 | 7_2:-84393558 | Msa1084110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATATAAAATAATTA+AGG | - | chr7_2:84394623-84394642 | Msa1084110:CDS | 0.0% |
| !! | AAAAAATATAAAATAATTAA+GGG | - | chr7_2:84394624-84394643 | Msa1084110:CDS | 0.0% |
| !! | AAATAAATAAAAAATTATTA+AGG | - | chr7_2:84396802-84396821 | Msa1084110:intron | 0.0% |
| !! | AATAAATAAAAAATTATTAA+GGG | - | chr7_2:84396803-84396822 | Msa1084110:intron | 0.0% |
| !!! | TTGCAATTTTAATATATTTA+AGG | - | chr7_2:84393743-84393762 | Msa1084110:intron | 10.0% |
| !! | AATAAAAAATTGCAAAAAAT+TGG | - | chr7_2:84393905-84393924 | Msa1084110:intron | 10.0% |
| !!! | AATTTAAAACTTTCTTTTTT+TGG | + | chr7_2:84394689-84394708 | None:intergenic | 10.0% |
| !! | AGTGATATTTAATTATTTAT+AGG | + | chr7_2:84396576-84396595 | None:intergenic | 10.0% |
| !!! | AATATAATTTTATTTTGTGT+TGG | - | chr7_2:84396628-84396647 | Msa1084110:intron | 10.0% |
| !! | GAAAACTATATTATAAATAA+GGG | - | chr7_2:84397092-84397111 | Msa1084110:intron | 10.0% |
| !! | AATTGTTAACTTAAAAAATA+GGG | + | chr7_2:84398415-84398434 | None:intergenic | 10.0% |
| !! | AAATTGTTAACTTAAAAAAT+AGG | + | chr7_2:84398416-84398435 | None:intergenic | 10.0% |
| !!! | AATTTGCTTATAAAAAGAAA+CGG | + | chr7_2:84394062-84394081 | None:intergenic | 15.0% |
| !!! | ATAAGCAAATTTTACTTTTT+AGG | - | chr7_2:84393964-84393983 | Msa1084110:intron | 15.0% |
| !!! | AATTTGCTTATAAAAAGAAA+CGG | - | chr7_2:84394062-84394081 | Msa1084110:intron | 15.0% |
| !! | TAATTATTAGGAAATGTTAA+CGG | + | chr7_2:84394742-84394761 | None:intergenic | 15.0% |
| !! | ACATAGTATCATTAATTATT+AGG | + | chr7_2:84394754-84394773 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr7_2:84394892-84394911 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr7_2:84394893-84394912 | None:intergenic | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | + | chr7_2:84394957-84394976 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | + | chr7_2:84394958-84394977 | None:intergenic | 15.0% |
| !! | TTAATTTAATTAAAGAGAAG+TGG | - | chr7_2:84395269-84395288 | Msa1084110:intron | 15.0% |
| !! | AAAAAAAAAAAAAACTCCAA+TGG | - | chr7_2:84395346-84395365 | Msa1084110:intron | 15.0% |
| !! | GATTTATATAGAATTGATTA+TGG | + | chr7_2:84395673-84395692 | None:intergenic | 15.0% |
| !!! | AATTTGTTTATAATAATGAC+CGG | + | chr7_2:84395756-84395775 | None:intergenic | 15.0% |
| !!! | TAAACAAATTTTGACTTTTT+AGG | - | chr7_2:84395766-84395785 | Msa1084110:intron | 15.0% |
| !!! | AAGTGAAATTATTTTTCTAT+TGG | + | chr7_2:84396262-84396281 | None:intergenic | 15.0% |
| !! | GAAAATATTAATACTATCAA+TGG | - | chr7_2:84396970-84396989 | Msa1084110:intron | 15.0% |
| !! | GGAAAACTATATTATAAATA+AGG | - | chr7_2:84397091-84397110 | Msa1084110:intron | 15.0% |
| !! | GTAAAATAAAATGAATCAAA+AGG | + | chr7_2:84397160-84397179 | None:intergenic | 15.0% |
| !! | TATTAATTAATAGAGACATT+TGG | + | chr7_2:84397765-84397784 | None:intergenic | 15.0% |
| !!! | TGTAAGTAGTAATATTTTTT+AGG | - | chr7_2:84397895-84397914 | Msa1084110:intron | 15.0% |
| !!! | GTAAGTAGTAATATTTTTTA+GGG | - | chr7_2:84397896-84397915 | Msa1084110:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | + | chr7_2:84397999-84398018 | None:intergenic | 15.0% |
| !!! | CATAAATTAAGTTGAAAATA+GGG | + | chr7_2:84398030-84398049 | None:intergenic | 15.0% |
| !!! | ACATAAATTAAGTTGAAAAT+AGG | + | chr7_2:84398031-84398050 | None:intergenic | 15.0% |
| !!! | TGAAGATTGAAAATTTTATA+GGG | - | chr7_2:84398313-84398332 | Msa1084110:intron | 15.0% |
| !!! | CAATTTTTTATATTTTGAAC+TGG | - | chr7_2:84398430-84398449 | Msa1084110:intron | 15.0% |
| !! | TAAATTGATCTTCTGTTATT+TGG | - | chr7_2:84393651-84393670 | Msa1084110:CDS | 20.0% |
| !! | TTAATTTCTAATGTTTGAAG+TGG | + | chr7_2:84393781-84393800 | None:intergenic | 20.0% |
| !! | CAAAAATAAAATCAAATAGG+TGG | + | chr7_2:84394234-84394253 | None:intergenic | 20.0% |
| !! | GGACAAAAATAAAATCAAAT+AGG | + | chr7_2:84394237-84394256 | None:intergenic | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | - | chr7_2:84394362-84394381 | Msa1084110:intron | 20.0% |
| !! | AAGAAATGTGAAAAATACAA+AGG | - | chr7_2:84394444-84394463 | Msa1084110:intron | 20.0% |
| !! | AGAAATGTGAAAAATACAAA+GGG | - | chr7_2:84394445-84394464 | Msa1084110:intron | 20.0% |
| !! | AAGTGATAAAGATACAAATA+AGG | - | chr7_2:84394596-84394615 | Msa1084110:CDS | 20.0% |
| !! | AAAATACACTTTGTTAACTT+CGG | - | chr7_2:84394711-84394730 | Msa1084110:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr7_2:84394823-84394842 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr7_2:84394860-84394879 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr7_2:84394933-84394952 | None:intergenic | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | + | chr7_2:84394956-84394975 | None:intergenic | 20.0% |
| !!! | AAAGCTATTTTAGAGTAAAA+TGG | - | chr7_2:84395099-84395118 | Msa1084110:intron | 20.0% |
| !!! | TTTAATGTTTAATGGACAAA+GGG | + | chr7_2:84395328-84395347 | None:intergenic | 20.0% |
| !!! | TTTTAATGTTTAATGGACAA+AGG | + | chr7_2:84395329-84395348 | None:intergenic | 20.0% |
| !!! | ATAATTGATTCTAACATGTT+TGG | - | chr7_2:84395479-84395498 | Msa1084110:intron | 20.0% |
| !!! | TTAAGTTGAATAAATTCTAG+AGG | + | chr7_2:84395530-84395549 | None:intergenic | 20.0% |
| !! | CATTTAATAAATGATGTATG+TGG | - | chr7_2:84395791-84395810 | Msa1084110:intron | 20.0% |
| !!! | AATTTGCTTATAATAGTGAT+CGG | - | chr7_2:84395865-84395884 | Msa1084110:intron | 20.0% |
| !!! | TAAACATTTGATTTGTTCAA+CGG | - | chr7_2:84395985-84396004 | Msa1084110:intron | 20.0% |
| !!! | TTTTTGTTTTGCTTCTTTAT+GGG | + | chr7_2:84396454-84396473 | None:intergenic | 20.0% |
| !!! | TTATAATATAGTTTTCCCTT+CGG | + | chr7_2:84397088-84397107 | None:intergenic | 20.0% |
| !! | AAAATCGAAATTAACGAAAA+AGG | + | chr7_2:84397204-84397223 | None:intergenic | 20.0% |
| !! | AAATGTTTGTTTATCTAACT+TGG | - | chr7_2:84397237-84397256 | Msa1084110:intron | 20.0% |
| !! | TCAAGTAACATTAACAAAAA+TGG | + | chr7_2:84397270-84397289 | None:intergenic | 20.0% |
| !! | TAACTAAGAATAAGAAGATA+AGG | + | chr7_2:84397484-84397503 | None:intergenic | 20.0% |
| !! | TAATTATCTACTTGTTCATT+TGG | - | chr7_2:84397783-84397802 | Msa1084110:intron | 20.0% |
| !! | GAAAAACTGACATATTTATA+GGG | + | chr7_2:84397939-84397958 | None:intergenic | 20.0% |
| !!! | TAAAATTTTCCTTCAACTTT+TGG | - | chr7_2:84397972-84397991 | Msa1084110:intron | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | + | chr7_2:84398000-84398019 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | - | chr7_2:84398003-84398022 | Msa1084110:intron | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | - | chr7_2:84398281-84398300 | Msa1084110:intron | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | - | chr7_2:84398282-84398301 | Msa1084110:intron | 20.0% |
| !!! | AAATTTTCAATCTTCACTTT+TGG | + | chr7_2:84398309-84398328 | None:intergenic | 20.0% |
| !!! | GTGAAGATTGAAAATTTTAT+AGG | - | chr7_2:84398312-84398331 | Msa1084110:intron | 20.0% |
| !!! | AAGTTGAAAGAAAATTTTAG+AGG | - | chr7_2:84398341-84398360 | Msa1084110:intron | 20.0% |
| !!! | AGTTGAAAGAAAATTTTAGA+GGG | - | chr7_2:84398342-84398361 | Msa1084110:intron | 20.0% |
| ! | AGAAATTAAAAGAGTGAATG+TGG | - | chr7_2:84393538-84393557 | Msa1084110:CDS | 25.0% |
| ! | ATTTCCTGTAAAGAAAGATT+AGG | - | chr7_2:84393580-84393599 | Msa1084110:CDS | 25.0% |
| ! | TTTCCTGTAAAGAAAGATTA+GGG | - | chr7_2:84393581-84393600 | Msa1084110:CDS | 25.0% |
| ! | CATTCAATTAATGATGTATG+TGG | - | chr7_2:84393989-84394008 | Msa1084110:intron | 25.0% |
| ! | TCAATTCAACATTTATGATC+TGG | - | chr7_2:84394176-84394195 | Msa1084110:intron | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | + | chr7_2:84394272-84394291 | None:intergenic | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | + | chr7_2:84394273-84394292 | None:intergenic | 25.0% |
| ! | AAGTTAGTAGTATTAATCAG+GGG | + | chr7_2:84394319-84394338 | None:intergenic | 25.0% |
| ! | CAAGTTAGTAGTATTAATCA+GGG | + | chr7_2:84394320-84394339 | None:intergenic | 25.0% |
| ! | ACAAGTTAGTAGTATTAATC+AGG | + | chr7_2:84394321-84394340 | None:intergenic | 25.0% |
| ! | GAAATGTGAAAAATACAAAG+GGG | - | chr7_2:84394446-84394465 | Msa1084110:intron | 25.0% |
| ! | AAATGTGAAAAATACAAAGG+GGG | - | chr7_2:84394447-84394466 | Msa1084110:intron | 25.0% |
| !!! | CTGTCATAAATTAGTTTTGA+TGG | + | chr7_2:84394526-84394545 | None:intergenic | 25.0% |
| ! | TAATTAAGGGTCATATTAAC+CGG | - | chr7_2:84394637-84394656 | Msa1084110:CDS | 25.0% |
| ! | AAATACACTTTGTTAACTTC+GGG | - | chr7_2:84394712-84394731 | Msa1084110:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr7_2:84394824-84394843 | None:intergenic | 25.0% |
| !!! | TGAAATGGATCAGTTATTTT+GGG | + | chr7_2:84394845-84394864 | None:intergenic | 25.0% |
| !! | TTGAAATGGATCAGTTATTT+TGG | + | chr7_2:84394846-84394865 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr7_2:84394934-84394953 | None:intergenic | 25.0% |
| !! | TTTTTCGTTATGAATGTTCT+TGG | + | chr7_2:84395081-84395100 | None:intergenic | 25.0% |
| ! | ATTTATGTCAAGTGTTAGAT+CGG | + | chr7_2:84395194-84395213 | None:intergenic | 25.0% |
| ! | TAAGCATTTCCTTTAACAAT+GGG | + | chr7_2:84395297-84395316 | None:intergenic | 25.0% |
| ! | ATAAGCATTTCCTTTAACAA+TGG | + | chr7_2:84395298-84395317 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAACTCCAATGG+TGG | - | chr7_2:84395349-84395368 | Msa1084110:intron | 25.0% |
| ! | TTACCTAAATCCATAAACAT+AGG | + | chr7_2:84395388-84395407 | None:intergenic | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr7_2:84395830-84395849 | None:intergenic | 25.0% |
| ! | CTTCAACATAATTCAAAAAG+TGG | - | chr7_2:84396012-84396031 | Msa1084110:intron | 25.0% |
| !!! | TTTTGTTTTGCTTCTTTATG+GGG | + | chr7_2:84396453-84396472 | None:intergenic | 25.0% |
| !!! | GTTTTTGTTTTGCTTCTTTA+TGG | + | chr7_2:84396455-84396474 | None:intergenic | 25.0% |
| !!! | AGATTTTAACATACAAGTGA+AGG | - | chr7_2:84396835-84396854 | Msa1084110:intron | 25.0% |
| !!! | GATTTTAACATACAAGTGAA+GGG | - | chr7_2:84396836-84396855 | Msa1084110:intron | 25.0% |
| ! | CAAAAATCTAAAGACATACT+AGG | - | chr7_2:84397008-84397027 | Msa1084110:intron | 25.0% |
| !! | TCAATGTTTTCATATCAATG+AGG | + | chr7_2:84397045-84397064 | None:intergenic | 25.0% |
| ! | ATATGAAAACATTGAGAGAT+AGG | - | chr7_2:84397050-84397069 | Msa1084110:intron | 25.0% |
| ! | CTTATTCTTAGTTATTCTAC+AGG | - | chr7_2:84397490-84397509 | Msa1084110:intron | 25.0% |
| !! | TACTTGTTCATTTGGAATTT+GGG | - | chr7_2:84397791-84397810 | Msa1084110:intron | 25.0% |
| ! | CGAAAAACTGACATATTTAT+AGG | + | chr7_2:84397940-84397959 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr7_2:84397971-84397990 | None:intergenic | 25.0% |
| ! | GAAAAGTTGGCATATTTATA+GGG | - | chr7_2:84398373-84398392 | Msa1084110:intron | 25.0% |
| ! | ATTTCTTTTTGTCAGACCTT+TGG | + | chr7_2:84393524-84393543 | None:intergenic | 30.0% |
| TTCCTGTAAAGAAAGATTAG+GGG | - | chr7_2:84393582-84393601 | Msa1084110:CDS | 30.0% | |
| TGCTTATAAAAAGAAACGGA+GGG | + | chr7_2:84394066-84394085 | None:intergenic | 30.0% | |
| TTGCTTATAAAAAGAAACGG+AGG | + | chr7_2:84394065-84394084 | None:intergenic | 30.0% | |
| GATGTATGTGGTTCATAATA+TGG | - | chr7_2:84394001-84394020 | Msa1084110:intron | 30.0% | |
| TTGCTTATAAAAAGAAACGG+AGG | - | chr7_2:84394065-84394084 | Msa1084110:intron | 30.0% | |
| TGCTTATAAAAAGAAACGGA+GGG | - | chr7_2:84394066-84394085 | Msa1084110:intron | 30.0% | |
| CAAATAGGTGGTTACATTAA+GGG | + | chr7_2:84394222-84394241 | None:intergenic | 30.0% | |
| TCAAATAGGTGGTTACATTA+AGG | + | chr7_2:84394223-84394242 | None:intergenic | 30.0% | |
| CATCTAGTAATTTGAAAAGG+GGG | + | chr7_2:84394270-84394289 | None:intergenic | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | + | chr7_2:84394271-84394290 | None:intergenic | 30.0% | |
| ! | TATTAATCAGGGGTATGTTT+AGG | + | chr7_2:84394309-84394328 | None:intergenic | 30.0% |
| CATACAAACAAAGGACAATT+TGG | - | chr7_2:84394371-84394390 | Msa1084110:intron | 30.0% | |
| AATGTGAAAAATACAAAGGG+GGG | - | chr7_2:84394448-84394467 | Msa1084110:intron | 30.0% | |
| !!! | TAAATTAGTTTTGATGGTGC+AGG | + | chr7_2:84394520-84394539 | None:intergenic | 30.0% |
| AATACACTTTGTTAACTTCG+GGG | - | chr7_2:84394713-84394732 | Msa1084110:intron | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr7_2:84394949-84394968 | None:intergenic | 30.0% | |
| GGGGAAATTAAATGCTTATT+AGG | + | chr7_2:84395173-84395192 | None:intergenic | 30.0% | |
| TTTATGTCAAGTGTTAGATC+GGG | + | chr7_2:84395193-84395212 | None:intergenic | 30.0% | |
| !! | TGTTTTGTTCCACTTTTAGA+GGG | - | chr7_2:84395433-84395452 | Msa1084110:intron | 30.0% |
| ! | AATTATGATCCCTCTAAAAG+TGG | + | chr7_2:84395445-84395464 | None:intergenic | 30.0% |
| AGAGGGATCATAATTGATTA+TGG | - | chr7_2:84395450-84395469 | Msa1084110:intron | 30.0% | |
| AGATGTTCTTAGAGTATGTT+TGG | + | chr7_2:84395715-84395734 | None:intergenic | 30.0% | |
| TGTTTATAATAATGACCGGA+GGG | + | chr7_2:84395752-84395771 | None:intergenic | 30.0% | |
| TTGTTTATAATAATGACCGG+AGG | + | chr7_2:84395753-84395772 | None:intergenic | 30.0% | |
| ! | AAAGTGTCCTTATTAGCATA+TGG | - | chr7_2:84396086-84396105 | Msa1084110:intron | 30.0% |
| TTATCTAGCAACTGATTGAT+AGG | - | chr7_2:84396281-84396300 | Msa1084110:intron | 30.0% | |
| !! | AAAGATAGTTTGTTGGTTAG+CGG | + | chr7_2:84396544-84396563 | None:intergenic | 30.0% |
| ! | CTACTTGTTCATTTGGAATT+TGG | - | chr7_2:84397790-84397809 | Msa1084110:intron | 30.0% |
| CGAAAAGTTGGCATATTTAT+AGG | - | chr7_2:84398372-84398391 | Msa1084110:intron | 30.0% | |
| TCATCATAATGAATATGCCT+CGG | + | chr7_2:84398504-84398523 | None:intergenic | 30.0% | |
| CATTATGATGATCTTCATTC+TGG | - | chr7_2:84398513-84398532 | Msa1084110:intron | 30.0% | |
| TTCCCCTAATCTTTCTTTAC+AGG | + | chr7_2:84393587-84393606 | None:intergenic | 35.0% | |
| GTGATCAGCAAACATATTTG+AGG | + | chr7_2:84393679-84393698 | None:intergenic | 35.0% | |
| TGAAAAGGGGGTTACATTTA+GGG | + | chr7_2:84394258-84394277 | None:intergenic | 35.0% | |
| TTGAAAAGGGGGTTACATTT+AGG | + | chr7_2:84394259-84394278 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | chr7_2:84394979-84394998 | Msa1084110:intron | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | - | chr7_2:84394992-84395011 | Msa1084110:intron | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | - | chr7_2:84394993-84395012 | Msa1084110:intron | 35.0% | |
| TTATGTCAAGTGTTAGATCG+GGG | + | chr7_2:84395192-84395211 | None:intergenic | 35.0% | |
| CATAAACATAGGTGCCTATT+AGG | + | chr7_2:84395377-84395396 | None:intergenic | 35.0% | |
| CTAATAGGCACCTATGTTTA+TGG | - | chr7_2:84395375-84395394 | Msa1084110:intron | 35.0% | |
| GCACCTATGTTTATGGATTT+AGG | - | chr7_2:84395382-84395401 | Msa1084110:intron | 35.0% | |
| !! | GTGTTTTGTTCCACTTTTAG+AGG | - | chr7_2:84395432-84395451 | Msa1084110:intron | 35.0% |
| TTGCTTATAATAGTGATCGG+AGG | - | chr7_2:84395868-84395887 | Msa1084110:intron | 35.0% | |
| TGCTTATAATAGTGATCGGA+GGG | - | chr7_2:84395869-84395888 | Msa1084110:intron | 35.0% | |
| TGACACACCATATGCTAATA+AGG | + | chr7_2:84396096-84396115 | None:intergenic | 35.0% | |
| TCGATGCACAAACAAACAAT+CGG | - | chr7_2:84396179-84396198 | Msa1084110:intron | 35.0% | |
| TTCGTCATAATTTCCATACG+TGG | + | chr7_2:84396214-84396233 | None:intergenic | 35.0% | |
| ! | TGTCAGTTTGCTTACTTATC+AGG | + | chr7_2:84396412-84396431 | None:intergenic | 35.0% |
| ! | CTCGATGAAAGATAGTTTGT+TGG | + | chr7_2:84396551-84396570 | None:intergenic | 35.0% |
| ATGTAATTCAAGCTGATCTC+AGG | - | chr7_2:84396861-84396880 | Msa1084110:intron | 35.0% | |
| GAACAAAACGAACTTTGATC+AGG | + | chr7_2:84397182-84397201 | None:intergenic | 35.0% | |
| TAACACAGAATCAGAAGATC+AGG | + | chr7_2:84397413-84397432 | None:intergenic | 35.0% | |
| CGTGAGAAATCTATCATTGA+TGG | - | chr7_2:84397569-84397588 | Msa1084110:intron | 35.0% | |
| ! | TCTATCATTGATGGCATTTC+TGG | - | chr7_2:84397578-84397597 | Msa1084110:intron | 35.0% |
| ! | TTGATGGCATTTCTGGATTT+AGG | - | chr7_2:84397585-84397604 | Msa1084110:intron | 35.0% |
| ! | TGATGGCATTTCTGGATTTA+GGG | - | chr7_2:84397586-84397605 | Msa1084110:intron | 35.0% |
| TAAGAGATCCTGTTCAAGTA+AGG | - | chr7_2:84397648-84397667 | Msa1084110:intron | 35.0% | |
| TATAACGACCTTACTTGAAC+AGG | + | chr7_2:84397659-84397678 | None:intergenic | 35.0% | |
| ! | TAAGGTCGTTATAAAGCACT+TGG | - | chr7_2:84397666-84397685 | Msa1084110:intron | 35.0% |
| ! | AAGGTCGTTATAAAGCACTT+GGG | - | chr7_2:84397667-84397686 | Msa1084110:intron | 35.0% |
| AGAGACATTTGGAGACATTA+AGG | + | chr7_2:84397754-84397773 | None:intergenic | 35.0% | |
| ! | AGCTTTGGTAACTTTCTTCT+GGG | + | chr7_2:84397823-84397842 | None:intergenic | 35.0% |
| TTATAGGGACCAAAAGTTGA+AGG | + | chr7_2:84397984-84398003 | None:intergenic | 35.0% | |
| GGTCTCTGTAAAGAATGAAA+AGG | + | chr7_2:84398482-84398501 | None:intergenic | 35.0% | |
| CATCATAATGAATATGCCTC+GGG | + | chr7_2:84398503-84398522 | None:intergenic | 35.0% | |
| TAGGTGGTTACATTAAGGGA+CGG | + | chr7_2:84394218-84394237 | None:intergenic | 40.0% | |
| TACAAAGGGGGGTTACATTA+AGG | - | chr7_2:84394459-84394478 | Msa1084110:intron | 40.0% | |
| ACAAAGGGGGGTTACATTAA+GGG | - | chr7_2:84394460-84394479 | Msa1084110:intron | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | + | chr7_2:84394995-84395014 | None:intergenic | 40.0% | |
| GAAGTGGAACCCATTGTTAA+AGG | - | chr7_2:84395285-84395304 | Msa1084110:intron | 40.0% | |
| GGATTTAGGTAACACCATTG+TGG | - | chr7_2:84395396-84395415 | Msa1084110:intron | 40.0% | |
| CACACTTACACAATCCACAA+TGG | + | chr7_2:84395413-84395432 | None:intergenic | 40.0% | |
| !!! | ATCGGAGGGAGTACTTATTT+TGG | - | chr7_2:84395883-84395902 | Msa1084110:intron | 40.0% |
| TGTTGGACTGTATACTCTTG+AGG | + | chr7_2:84396126-84396145 | None:intergenic | 40.0% | |
| ! | TCAAGAGTATACAGTCCAAC+AGG | - | chr7_2:84396125-84396144 | Msa1084110:intron | 40.0% |
| CGATGCACAAACAAACAATC+GGG | - | chr7_2:84396180-84396199 | Msa1084110:intron | 40.0% | |
| GTCATAATTTCCATACGTGG+TGG | + | chr7_2:84396211-84396230 | None:intergenic | 40.0% | |
| !! | TTGGGGTTTTGTGGAATGAA+AGG | + | chr7_2:84396338-84396357 | None:intergenic | 40.0% |
| !! | AGTTTGGCTTTGCTGCATTT+GGG | + | chr7_2:84396356-84396375 | None:intergenic | 40.0% |
| !! | TAGTTTGGCTTTGCTGCATT+TGG | + | chr7_2:84396357-84396376 | None:intergenic | 40.0% |
| !!! | GGTCTTTTTTGCAGCTAGTT+TGG | + | chr7_2:84396372-84396391 | None:intergenic | 40.0% |
| !! | CTTCTTTATGGGGTCTTGTT+AGG | + | chr7_2:84396443-84396462 | None:intergenic | 40.0% |
| TTATGTTTGACTGAGTGTGG+TGG | + | chr7_2:84396499-84396518 | None:intergenic | 40.0% | |
| CAGTTATGTTTGACTGAGTG+TGG | + | chr7_2:84396502-84396521 | None:intergenic | 40.0% | |
| CTAAAGACATACTAGGTGTC+AGG | - | chr7_2:84397015-84397034 | Msa1084110:intron | 40.0% | |
| TAGGATTACTTGAACACCGA+AGG | - | chr7_2:84397069-84397088 | Msa1084110:intron | 40.0% | |
| AGGATTACTTGAACACCGAA+GGG | - | chr7_2:84397070-84397089 | Msa1084110:intron | 40.0% | |
| GTGTGACTATCTGATGTTAC+AGG | + | chr7_2:84397135-84397154 | None:intergenic | 40.0% | |
| ! | AAAGCACTTGGGAAAGCTTT+AGG | - | chr7_2:84397678-84397697 | Msa1084110:intron | 40.0% |
| ! | CAGCTTTGGTAACTTTCTTC+TGG | + | chr7_2:84397824-84397843 | None:intergenic | 40.0% |
| GAAGAAAGTTACCAAAGCTG+TGG | - | chr7_2:84397824-84397843 | Msa1084110:intron | 40.0% | |
| GAGGGACTAAAACGAAAAGT+TGG | - | chr7_2:84398360-84398379 | Msa1084110:intron | 40.0% | |
| TTGACGTACGTCTTGCTTAG+AGG | + | chr7_2:84394134-84394153 | None:intergenic | 45.0% | |
| TGGTTACATTAAGGGACGGA+GGG | + | chr7_2:84394214-84394233 | None:intergenic | 45.0% | |
| CATATTAACCGGTACCTCTG+AGG | - | chr7_2:84394648-84394667 | Msa1084110:intron | 45.0% | |
| ATTGTATACTCCCTCCGTCT+CGG | - | chr7_2:84394788-84394807 | Msa1084110:intron | 45.0% | |
| ATGGGTCAGTTATTCCGAGA+CGG | + | chr7_2:84394805-84394824 | None:intergenic | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | - | chr7_2:84394997-84395016 | Msa1084110:intron | 45.0% | |
| ATATAGTACTACCTCCGTCC+CGG | + | chr7_2:84395014-84395033 | None:intergenic | 45.0% | |
| ! | CTCCAATGGTGGAACCTAAT+AGG | - | chr7_2:84395360-84395379 | Msa1084110:intron | 45.0% |
| TGCCTATTAGGTTCCACCAT+TGG | + | chr7_2:84395365-84395384 | None:intergenic | 45.0% | |
| GAGTATGTTTGGTTGTGCAG+TGG | + | chr7_2:84395704-84395723 | None:intergenic | 45.0% | |
| TACAACGAAGTTACTCCCTC+CGG | - | chr7_2:84395734-84395753 | Msa1084110:intron | 45.0% | |
| AGTCCAACAGGTCACATTAG+AGG | - | chr7_2:84396137-84396156 | Msa1084110:intron | 45.0% | |
| TTGCCTCTAATGTGACCTGT+TGG | + | chr7_2:84396143-84396162 | None:intergenic | 45.0% | |
| !! | TTGCTGCATTTGGGGTTTTG+TGG | + | chr7_2:84396347-84396366 | None:intergenic | 45.0% |
| !! | GTTTGGCTTTGCTGCATTTG+GGG | + | chr7_2:84396355-84396374 | None:intergenic | 45.0% |
| !! | TATGGGGTCTTGTTAGGTCT+TGG | + | chr7_2:84396437-84396456 | None:intergenic | 45.0% |
| TCATTCTTTACAGAGACCCG+AGG | - | chr7_2:84398484-84398503 | Msa1084110:intron | 45.0% | |
| TCAAGATTCGACGTCGTTTC+TGG | - | chr7_2:84398562-84398581 | Msa1084110:intron | 45.0% | |
| ! | TCGTTTCTGGATGCGTGTAT+TGG | - | chr7_2:84398575-84398594 | Msa1084110:intron | 45.0% |
| TATTGGATGCAGCTGGTCAA+GGG | - | chr7_2:84398592-84398611 | Msa1084110:intron | 45.0% | |
| !!! | TTTTTTTTTTTAATGTTTAA+TGG | + | chr7_2:84395336-84395355 | None:intergenic | 5.0% |
| !!! | AAAAAAATCTAATTTTTTTA+AGG | + | chr7_2:84398104-84398123 | None:intergenic | 5.0% |
| !!! | ATGATTTTTTATATTTTTTA+CGG | + | chr7_2:84398158-84398177 | None:intergenic | 5.0% |
| GCAGCTGGCAATATCACCAA+AGG | - | chr7_2:84393505-84393524 | Msa1084110:CDS | 50.0% | |
| GTGGTTACATTAAGGGACGG+AGG | + | chr7_2:84394215-84394234 | None:intergenic | 50.0% | |
| AGGGGGGTTACATTAAGGGA+CGG | - | chr7_2:84394464-84394483 | Msa1084110:intron | 50.0% | |
| GGGTTACATTAAGGGACGGA+GGG | - | chr7_2:84394468-84394487 | Msa1084110:intron | 50.0% | |
| GTCAGTTATTCCGAGACGGA+GGG | + | chr7_2:84394801-84394820 | None:intergenic | 50.0% | |
| GAATGTGCTCACGAACAAGC+TGG | + | chr7_2:84397622-84397641 | None:intergenic | 50.0% | |
| !! | TGGGAAAGCTTTAGGACGAG+AGG | - | chr7_2:84397686-84397705 | Msa1084110:intron | 50.0% |
| TACCAAAGCTGTGGACACTC+TGG | - | chr7_2:84397833-84397852 | Msa1084110:intron | 50.0% | |
| ! | ATTCTGGAAGCGCAGTCCAA+AGG | - | chr7_2:84398529-84398548 | Msa1084110:intron | 50.0% |
| TCTTGACAGCATTGCGCCTT+TGG | + | chr7_2:84398548-84398567 | None:intergenic | 50.0% | |
| ATGCGTGTATTGGATGCAGC+TGG | - | chr7_2:84398585-84398604 | Msa1084110:intron | 50.0% | |
| GTATTGGATGCAGCTGGTCA+AGG | - | chr7_2:84398591-84398610 | Msa1084110:intron | 50.0% | |
| GGGGTTACATTAAGGGACGG+AGG | - | chr7_2:84394467-84394486 | Msa1084110:intron | 55.0% | |
| !! | TAACCGGTACCTCTGAGGCA+CGG | - | chr7_2:84394653-84394672 | Msa1084110:intron | 55.0% |
| !! | TACCTCTGAGGCACGGGTTA+AGG | - | chr7_2:84394660-84394679 | Msa1084110:intron | 55.0% |
| TTCCTTAACCCGTGCCTCAG+AGG | + | chr7_2:84394665-84394684 | None:intergenic | 55.0% | |
| GGTCAGTTATTCCGAGACGG+AGG | + | chr7_2:84394802-84394821 | None:intergenic | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | - | chr7_2:84395000-84395019 | Msa1084110:intron | 55.0% | |
| ! | CAGGCGTTTTGCGAGCAAGT+TGG | + | chr7_2:84396393-84396412 | None:intergenic | 55.0% |
| ! | CTCCAGAGTGTCCACAGCTT+TGG | + | chr7_2:84397838-84397857 | None:intergenic | 55.0% |
| GAGTCTGCAGTGGAACAAGC+TGG | - | chr7_2:84397855-84397874 | Msa1084110:intron | 55.0% | |
| !! | GGTCAAGGTCAAGGTACTGC+TGG | - | chr7_2:84398637-84398656 | Msa1084110:intron | 55.0% |
| !! | GGTCAAGGTACTGCTGGTCA+AGG | - | chr7_2:84398643-84398662 | Msa1084110:intron | 55.0% |
| !! | AACCGGTACCTCTGAGGCAC+GGG | - | chr7_2:84394654-84394673 | Msa1084110:intron | 60.0% |
| ! | AACCCGTGCCTCAGAGGTAC+CGG | + | chr7_2:84394659-84394678 | None:intergenic | 60.0% |
| TCGGGCTCAACCACCACGTA+TGG | - | chr7_2:84396198-84396217 | Msa1084110:intron | 60.0% | |
| GCTCTACGTGCACGCACATG+CGG | + | chr7_2:84397536-84397555 | None:intergenic | 60.0% | |
| !! | GGACACTCTGGAGTCTGCAG+TGG | - | chr7_2:84397845-84397864 | Msa1084110:intron | 60.0% |
| TGGATGCAGCTGGTCAAGGG+TGG | - | chr7_2:84398595-84398614 | Msa1084110:intron | 60.0% | |
| CAGCTGGTCAAGGGTGGTCA+AGG | - | chr7_2:84398601-84398620 | Msa1084110:intron | 60.0% | |
| !! | AAGGGTGGTCAAGGTGCTGC+TGG | - | chr7_2:84398610-84398629 | Msa1084110:intron | 60.0% |
| GCTGGAGGTGGTCAAGGTCA+AGG | - | chr7_2:84398628-84398647 | Msa1084110:intron | 60.0% | |
| !! | GGTGGTCAAGGTGCTGCTGG+AGG | - | chr7_2:84398613-84398632 | Msa1084110:intron | 65.0% |
| !! | GGTCAAGGTGCTGCTGGAGG+TGG | - | chr7_2:84398616-84398635 | Msa1084110:intron | 65.0% |
| !! | GGTGCTGCTGGAGGTGGTCA+AGG | - | chr7_2:84398622-84398641 | Msa1084110:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 84393503 | 84398672 | 84393503 | ID=Msa1084110;Name=Msa1084110 |
| chr7_2 | mRNA | 84393503 | 84398672 | 84393503 | ID=Msa1084110-mRNA-1;Parent=Msa1084110;Name=Msa1084110-mRNA-1;_AED=0.52;_eAED=0.86;_QI=0|0|0|0.5|1|1|4|0|139 |
| chr7_2 | exon | 84398649 | 84398672 | 84398649 | ID=Msa1084110-mRNA-1:exon:22587;Parent=Msa1084110-mRNA-1 |
| chr7_2 | exon | 84394506 | 84394663 | 84394506 | ID=Msa1084110-mRNA-1:exon:22586;Parent=Msa1084110-mRNA-1 |
| chr7_2 | exon | 84394297 | 84394358 | 84394297 | ID=Msa1084110-mRNA-1:exon:22585;Parent=Msa1084110-mRNA-1 |
| chr7_2 | exon | 84393503 | 84393678 | 84393503 | ID=Msa1084110-mRNA-1:exon:22584;Parent=Msa1084110-mRNA-1 |
| chr7_2 | CDS | 84398649 | 84398672 | 84398649 | ID=Msa1084110-mRNA-1:cds;Parent=Msa1084110-mRNA-1 |
| chr7_2 | CDS | 84394506 | 84394663 | 84394506 | ID=Msa1084110-mRNA-1:cds;Parent=Msa1084110-mRNA-1 |
| chr7_2 | CDS | 84394297 | 84394358 | 84394297 | ID=Msa1084110-mRNA-1:cds;Parent=Msa1084110-mRNA-1 |
| chr7_2 | CDS | 84393503 | 84393678 | 84393503 | ID=Msa1084110-mRNA-1:cds;Parent=Msa1084110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
