AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1228610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1228610 MtrunA17_Chr4g0001461 82.143 392 20 1 35 376 1 392 0.0 634
Msa1228610 MtrunA17_Chr2g0333881 72.832 346 94 0 31 376 51 396 0.0 528
Msa1228610 MtrunA17_Chr5g0396921 65.700 207 52 1 170 376 22 209 2.49e-91 273
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1228610 AT1G62640.2 65.722 388 113 4 6 375 18 403 0.0 520
Msa1228610 AT1G62640.1 65.722 388 113 4 6 375 18 403 0.0 520

Find 78 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTAAACGTCGAGTTCTTTC+AGG 0.225004 8_2:+4055817 Msa1228610:CDS
CATGAATATGAATACTTCTT+TGG 0.249673 8_2:-4057788 None:intergenic
CCACTACATCAATAATTCTT+TGG 0.266849 8_2:-4058099 None:intergenic
ATTATTGCTGCTTCTGGCTT+TGG 0.274041 8_2:+4058250 Msa1228610:CDS
TAATGCATCAGACTCAATTA+AGG 0.282247 8_2:+4057748 Msa1228610:CDS
AGTTAGAAGTGGAAAGATTA+AGG 0.293816 8_2:+4058219 Msa1228610:CDS
GGACAAATTATTGCTGCTTC+TGG 0.294045 8_2:+4058244 Msa1228610:CDS
GCTTTGGTGCTGGTCTTACT+TGG 0.297418 8_2:+4058266 Msa1228610:CDS
TTTCAAAATGTTCTTGTAAT+CGG 0.300523 8_2:+4057134 Msa1228610:CDS
GCATGTAGTGGATTTATCTT+TGG 0.313034 8_2:+4056991 Msa1228610:CDS
TATCAGCTGCTAGTCACATT+AGG 0.325626 8_2:+4057019 Msa1228610:CDS
TGTTGGACTAATTAACAAAA+AGG 0.327242 8_2:-4054556 None:intergenic
ATCAGCTGCTAGTCACATTA+GGG 0.332459 8_2:+4057020 Msa1228610:CDS
ATATCAAATGTGGCTGATTA+TGG 0.349357 8_2:+4058154 Msa1228610:CDS
AGGAAATGGAAGGTGATAAG+AGG 0.375453 8_2:-4054625 None:intergenic
GCTGCTTCTGGCTTTGGTGC+TGG 0.385323 8_2:+4058256 Msa1228610:CDS
GGAAGATGAAGGAGTGAAGT+TGG 0.386428 8_2:-4054602 None:intergenic
CTTTGGTGCTGGTCTTACTT+GGG 0.392366 8_2:+4058267 Msa1228610:CDS
GCAAAGGAGGTTGGGAATCA+TGG 0.411841 8_2:-4054676 None:intergenic
GGGGATAAGGTCTTACTTTG+AGG 0.412976 8_2:+4058308 Msa1228610:exon
CTCTTTCGAGATATATCGAT+TGG 0.434773 8_2:+4057165 Msa1228610:CDS
GGGATAAGGTCTTACTTTGA+GGG 0.460615 8_2:+4058309 Msa1228610:exon
ATACCTTGGCAAAGGAGGTT+GGG 0.472067 8_2:-4054684 None:intergenic
GAATATGAATACTTCTTTGG+AGG 0.473078 8_2:-4057785 None:intergenic
TAGTTGATACTTCTGATGAA+TGG 0.482232 8_2:+4055773 Msa1228610:CDS
GTATATCACTTGAAAACATA+AGG 0.488538 8_2:-4058358 None:intergenic
TGCTGCCTCTACTGATAAAG+TGG 0.490848 8_2:-4056573 None:intergenic
AATGCATCAGACTCAATTAA+GGG 0.492850 8_2:+4057749 Msa1228610:CDS
GTGATAAGAGGGGAAGATGA+AGG 0.493811 8_2:-4054613 None:intergenic
GCTGTAATGTTATAAGCTGC+TGG 0.494699 8_2:-4056967 None:intergenic
TAGATGAACACACCAAGATT+AGG 0.495759 8_2:-4056640 None:intergenic
CATAGTTTAGCATAACACTT+TGG 0.499298 8_2:+4054495 Msa1228610:five_prime_UTR
TGACTGGTTACTTCTCCATC+AGG 0.499458 8_2:+4057913 Msa1228610:CDS
AGTGCTGACTCAATTGACTT+TGG 0.500820 8_2:-4057860 None:intergenic
AGAAGTGGAAAGATTAAGGA+AGG 0.501824 8_2:+4058223 Msa1228610:CDS
AAGATTAGGTCAACATCAGC+TGG 0.502133 8_2:-4056626 None:intergenic
CCAAAGAATTATTGATGTAG+TGG 0.502244 8_2:+4058099 Msa1228610:CDS
TACCTGCATCCAGCATTGAC+TGG 0.503751 8_2:+4057897 Msa1228610:CDS
TTTCAGATTTCAAAACAGCT+TGG 0.504851 8_2:+4056931 Msa1228610:intron
AATTGAGTCAGCACTTCAAA+AGG 0.505835 8_2:+4057868 Msa1228610:CDS
CATACCTTGGCAAAGGAGGT+TGG 0.506757 8_2:-4054685 None:intergenic
AATGCAGCATATAAAGAAGA+AGG 0.507598 8_2:+4057719 Msa1228610:CDS
GAGAAGTAACCAGTCAATGC+TGG 0.509382 8_2:-4057906 None:intergenic
TTTGGTGCTGGTCTTACTTG+GGG 0.514017 8_2:+4058268 Msa1228610:CDS
GGAAATGGAAGGTGATAAGA+GGG 0.514373 8_2:-4054624 None:intergenic
AGCTGATGTTGACCTAATCT+TGG 0.514969 8_2:+4056628 Msa1228610:CDS
AACCAGTCAATGCTGGATGC+AGG 0.515256 8_2:-4057899 None:intergenic
TATTCATGCATACATATGAA+TGG 0.524043 8_2:+4057803 Msa1228610:CDS
AAGTGCAGCTTCCATTCCAT+TGG 0.525636 8_2:+4058183 Msa1228610:CDS
GGCTGCAAGCTGGTAGGATG+TGG 0.526765 8_2:+4055703 Msa1228610:CDS
CTTTGCAGACTTGTTAGTCA+AGG 0.528713 8_2:+4055682 Msa1228610:intron
AACTCGACGTTTACGAATCC+CGG 0.530634 8_2:-4055809 None:intergenic
AACATTACAGCTGCATGTAG+TGG 0.532984 8_2:+4056979 Msa1228610:CDS
TGCTGGTGCTGTTCTAGTAC+AGG 0.539004 8_2:+4057223 Msa1228610:CDS
TCATTAGTAATCTCAAGAGT+TGG 0.547090 8_2:-4055736 None:intergenic
GAGTCAGCACTTCAAAAGGC+TGG 0.548884 8_2:+4057872 Msa1228610:CDS
TTAGATGAATCAGTTAGAAG+TGG 0.549460 8_2:+4058208 Msa1228610:CDS
ACTGATTCATCTAAAGCCAA+TGG 0.554412 8_2:-4058199 None:intergenic
TTCATCTAAAGCCAATGGAA+TGG 0.563272 8_2:-4058194 None:intergenic
CTTGACCACTTTATCAGTAG+AGG 0.564880 8_2:+4056568 Msa1228610:CDS
AATGGATAAGTGTTCGCACC+GGG 0.577062 8_2:+4055791 Msa1228610:CDS
GAATGGATAAGTGTTCGCAC+CGG 0.581811 8_2:+4055790 Msa1228610:CDS
AAGACATACCTTGGCAAAGG+AGG 0.582045 8_2:-4054689 None:intergenic
ATGCAGCATATAAAGAAGAA+GGG 0.586575 8_2:+4057720 Msa1228610:CDS
CAAAATACATGAACTTCTGT+CGG 0.589681 8_2:-4057189 None:intergenic
CTTTATCAGTAGAGGCAGCA+AGG 0.593587 8_2:+4056576 Msa1228610:CDS
TGTTAGTCAAGGCTGCAAGC+TGG 0.594953 8_2:+4055693 Msa1228610:CDS
TCTAAGACATACCTTGGCAA+AGG 0.596664 8_2:-4054692 None:intergenic
AGTCAAGGCTGCAAGCTGGT+AGG 0.597236 8_2:+4055697 Msa1228610:CDS
TGCAGCATATAAAGAAGAAG+GGG 0.606045 8_2:+4057721 Msa1228610:CDS
ATTCCCAACCTCCTTTGCCA+AGG 0.606866 8_2:+4054681 Msa1228610:CDS
AGCAAGGAAAGCTCTTGAGA+TGG 0.614431 8_2:+4056592 Msa1228610:CDS
GATTTGAATAGTGATGGTGA+TGG 0.616422 8_2:+4057464 Msa1228610:CDS
TCAGCTGCTAGTCACATTAG+GGG 0.630404 8_2:+4057021 Msa1228610:CDS
GAAAGCTCTTGAGATGGCAA+AGG 0.633878 8_2:+4056598 Msa1228610:CDS
GTTGGTAGATACATTGACCA+TGG 0.637541 8_2:-4054584 None:intergenic
GAAATGGAAGGTGATAAGAG+GGG 0.692819 8_2:-4054623 None:intergenic
ATTGCAGGCGTGCAACTACG+AGG 0.723991 8_2:+4057421 Msa1228610:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTACTTATATAAAAAT+TGG - chr8_2:4056749-4056768 None:intergenic 10.0%
!! AAAAATTATTTACAACATTT+AGG - chr8_2:4057089-4057108 None:intergenic 10.0%
!!! TTAATCATAAAAAAAAGTTT+TGG - chr8_2:4057975-4057994 None:intergenic 10.0%
!! TAATCAAATATATTACTATA+TGG - chr8_2:4058015-4058034 None:intergenic 10.0%
!! ATATAGTAATATATTTGATT+AGG + chr8_2:4058014-4058033 Msa1228610:intron 10.0%
!! TATAGTAATATATTTGATTA+GGG + chr8_2:4058015-4058034 Msa1228610:intron 10.0%
!!! ATTATTTGTTATAAGATGTA+AGG - chr8_2:4054899-4054918 None:intergenic 15.0%
!!! AATATTAATAGGAAGTATAA+TGG + chr8_2:4055153-4055172 Msa1228610:intron 15.0%
!! AAATTAAAATCAAATCATGA+TGG + chr8_2:4055555-4055574 Msa1228610:intron 15.0%
!!! AATTTAGGGAAATTTATTTT+TGG - chr8_2:4057945-4057964 None:intergenic 15.0%
!!! TTCATTTTATATCATACACT+AGG + chr8_2:4054744-4054763 Msa1228610:intron 20.0%
!! CTATTCATTATAAACAAATG+TGG + chr8_2:4055282-4055301 Msa1228610:intron 20.0%
!!! CTATAACAAACTCTAAAATA+TGG - chr8_2:4055652-4055671 None:intergenic 20.0%
!! CATAAACATCATAAATAGAA+TGG + chr8_2:4055862-4055881 Msa1228610:intron 20.0%
!!! AAATTGTTTTGAGATATTGT+TGG + chr8_2:4055965-4055984 Msa1228610:intron 20.0%
!!! GTTTTCTCTAAATATAGTTT+TGG - chr8_2:4056131-4056150 None:intergenic 20.0%
!! GAAGAAAAAAAAATGTAGTT+TGG - chr8_2:4056153-4056172 None:intergenic 20.0%
!!! ATCAGTTGATAATATAAGTT+TGG - chr8_2:4056209-4056228 None:intergenic 20.0%
!!! TAATAGTTCAGTTTAGTTTT+CGG + chr8_2:4056294-4056313 Msa1228610:intron 20.0%
!! TATATATCCAATGTCTTATA+AGG + chr8_2:4056414-4056433 Msa1228610:intron 20.0%
!!! AAGTAAAAAGTACATATATC+TGG + chr8_2:4056759-4056778 Msa1228610:intron 20.0%
!!! GGTTTTTTATATAAGCAAAA+AGG - chr8_2:4056794-4056813 None:intergenic 20.0%
!!! TTTTGCTTATATAAAAAACC+AGG + chr8_2:4056794-4056813 Msa1228610:intron 20.0%
!!! AGTTACTTTTTGTTGAATTA+AGG + chr8_2:4057052-4057071 Msa1228610:intron 20.0%
!!! TTTTTTCATTTTATGAATGC+AGG + chr8_2:4057104-4057123 Msa1228610:intron 20.0%
!! TTTCAAAATGTTCTTGTAAT+CGG + chr8_2:4057134-4057153 Msa1228610:CDS 20.0%
!! ATATATTTGATTAGGGAAAA+AGG + chr8_2:4058022-4058041 Msa1228610:intron 20.0%
!! TAAATACTGAATTATTAGCA+TGG - chr8_2:4058057-4058076 None:intergenic 20.0%
!!! ATTTACTTGTTGATAAATGT+AGG + chr8_2:4058072-4058091 Msa1228610:intron 20.0%
! TGTTGGACTAATTAACAAAA+AGG - chr8_2:4054559-4054578 None:intergenic 25.0%
!!! CACTAGGTTTTAATAAGTTA+TGG + chr8_2:4054760-4054779 Msa1228610:intron 25.0%
!! TTGATAACTGTTACAAATCA+TGG + chr8_2:4055024-4055043 Msa1228610:intron 25.0%
! TAATGGTGAGAGTTATTTAT+AGG + chr8_2:4055170-4055189 Msa1228610:intron 25.0%
! ATAACTAAACTATGGTTAGT+TGG - chr8_2:4055234-4055253 None:intergenic 25.0%
!!! GTTAGTTGATAACTAAACTA+TGG - chr8_2:4055242-4055261 None:intergenic 25.0%
! GTTTAGTTATCAACTAACTA+TGG + chr8_2:4055244-4055263 Msa1228610:intron 25.0%
! GATGCATGTAAATAAAATTG+TGG + chr8_2:4055307-4055326 Msa1228610:intron 25.0%
! CATGTAAATAAAATTGTGGT+TGG + chr8_2:4055311-4055330 Msa1228610:intron 25.0%
! TAAAATATGGTTCCAAGTTA+TGG - chr8_2:4055639-4055658 None:intergenic 25.0%
!!! TGAATTGAATTTGGCTTTTA+TGG + chr8_2:4055892-4055911 Msa1228610:intron 25.0%
! CAATTTCTTCTACATACTTA+TGG - chr8_2:4055951-4055970 None:intergenic 25.0%
!! ATTCTGTTTTCAATTGTTGA+TGG + chr8_2:4055995-4056014 Msa1228610:intron 25.0%
!! TTCTGTTTTCAATTGTTGAT+GGG + chr8_2:4055996-4056015 Msa1228610:intron 25.0%
! ATCCTCATTATTACACTAAT+AGG - chr8_2:4056022-4056041 None:intergenic 25.0%
! AAATTGAACCAAATCGTTAA+TGG + chr8_2:4056094-4056113 Msa1228610:intron 25.0%
!!! CTAAATATAGTTTTGGTTCA+GGG - chr8_2:4056124-4056143 None:intergenic 25.0%
!!! TCTAAATATAGTTTTGGTTC+AGG - chr8_2:4056125-4056144 None:intergenic 25.0%
!!! AATAGTTCAGTTTAGTTTTC+GGG + chr8_2:4056295-4056314 Msa1228610:intron 25.0%
! TCTTACTCACATTTATTACT+AGG - chr8_2:4056333-4056352 None:intergenic 25.0%
!! CTCACATTTTCATCTAATAT+GGG - chr8_2:4056359-4056378 None:intergenic 25.0%
!! ACTCACATTTTCATCTAATA+TGG - chr8_2:4056360-4056379 None:intergenic 25.0%
!! TTGATTTTGCTTGATGTTTA+TGG + chr8_2:4056529-4056548 Msa1228610:intron 25.0%
!! AGAAGTTCATGTATTTTGTT+TGG + chr8_2:4057194-4057213 Msa1228610:CDS 25.0%
! TATGATGAAAACCATAAACA+TGG - chr8_2:4057297-4057316 None:intergenic 25.0%
!! TGGTTTTCATCATAGTAAAT+AGG + chr8_2:4057303-4057322 Msa1228610:intron 25.0%
!! GGTTTTCATCATAGTAAATA+GGG + chr8_2:4057304-4057323 Msa1228610:intron 25.0%
!!! TAGTAAATAGGGTTTTAACA+TGG + chr8_2:4057315-4057334 Msa1228610:intron 25.0%
! GTTATATATGTTTACATTGC+AGG + chr8_2:4057406-4057425 Msa1228610:intron 25.0%
!!! AGTTTTGATTTGAATAGTGA+TGG + chr8_2:4057458-4057477 Msa1228610:CDS 25.0%
! AATGTAATCACATATATCAC+CGG - chr8_2:4057546-4057565 None:intergenic 25.0%
! CATGAATATGAATACTTCTT+TGG - chr8_2:4057791-4057810 None:intergenic 25.0%
! TATTCATGCATACATATGAA+TGG + chr8_2:4057803-4057822 Msa1228610:CDS 25.0%
!!! GTTTTGGTCACTTAAATTTA+GGG - chr8_2:4057959-4057978 None:intergenic 25.0%
!!! AGTTTTGGTCACTTAAATTT+AGG - chr8_2:4057960-4057979 None:intergenic 25.0%
!!! CTATATGGTATATCACTTTT+AGG - chr8_2:4058000-4058019 None:intergenic 25.0%
!!! ACATTTGATATCACTTTTTC+TGG - chr8_2:4058145-4058164 None:intergenic 25.0%
! AGAAAAAGTGATATCAAATG+TGG + chr8_2:4058144-4058163 Msa1228610:CDS 25.0%
! GTATATCACTTGAAAACATA+AGG - chr8_2:4058361-4058380 None:intergenic 25.0%
CATAGTTTAGCATAACACTT+TGG + chr8_2:4054495-4054514 Msa1228610:five_prime_UTR 30.0%
! ATTAGTCCAACATTTTTCCA+TGG + chr8_2:4054567-4054586 Msa1228610:five_prime_UTR 30.0%
! ACTAAAGCAAACAAGTTTTG+AGG - chr8_2:4054648-4054667 None:intergenic 30.0%
!! AGAAATTCTAAGACATACCT+TGG - chr8_2:4054701-4054720 None:intergenic 30.0%
TGTTATAAGATGTAAGGTGT+GGG - chr8_2:4054893-4054912 None:intergenic 30.0%
TTGTTATAAGATGTAAGGTG+TGG - chr8_2:4054894-4054913 None:intergenic 30.0%
ACTTTACTATGAGTCTCTAT+GGG - chr8_2:4055117-4055136 None:intergenic 30.0%
! CCTCAATATTAAGGTTTTTG+AGG - chr8_2:4055353-4055372 None:intergenic 30.0%
CCTCAAAAACCTTAATATTG+AGG + chr8_2:4055350-4055369 Msa1228610:intron 30.0%
ATTTAACATAATAGTCGCCT+TGG - chr8_2:4055409-4055428 None:intergenic 30.0%
TAATAAAAAAACTGCACAGG+AGG - chr8_2:4055476-4055495 None:intergenic 30.0%
GTGTAATAAAAAAACTGCAC+AGG - chr8_2:4055479-4055498 None:intergenic 30.0%
TCATTAGTAATCTCAAGAGT+TGG - chr8_2:4055739-4055758 None:intergenic 30.0%
! TAGTTGATACTTCTGATGAA+TGG + chr8_2:4055773-4055792 Msa1228610:CDS 30.0%
TCTACATACTTATGGAAACA+TGG - chr8_2:4055943-4055962 None:intergenic 30.0%
AATGAGGATTGTTCATGATT+CGG + chr8_2:4056033-4056052 Msa1228610:intron 30.0%
! TAAGGTTTCAGGTAAAAATG+TGG + chr8_2:4056432-4056451 Msa1228610:intron 30.0%
AATCAAGTCAAACCTTGTTA+GGG - chr8_2:4056515-4056534 None:intergenic 30.0%
AAATCAAGTCAAACCTTGTT+AGG - chr8_2:4056516-4056535 None:intergenic 30.0%
! TCTACTTCAGATGATCTTTT+TGG + chr8_2:4056659-4056678 Msa1228610:CDS 30.0%
! ATATAAGCAAAAAGGTGCAT+TGG - chr8_2:4056786-4056805 None:intergenic 30.0%
TTTCAGATTTCAAAACAGCT+TGG + chr8_2:4056931-4056950 Msa1228610:intron 30.0%
CAAAATACATGAACTTCTGT+CGG - chr8_2:4057192-4057211 None:intergenic 30.0%
AATGCAGCATATAAAGAAGA+AGG + chr8_2:4057719-4057738 Msa1228610:CDS 30.0%
ATGCAGCATATAAAGAAGAA+GGG + chr8_2:4057720-4057739 Msa1228610:CDS 30.0%
TAATGCATCAGACTCAATTA+AGG + chr8_2:4057748-4057767 Msa1228610:CDS 30.0%
AATGCATCAGACTCAATTAA+GGG + chr8_2:4057749-4057768 Msa1228610:CDS 30.0%
GAATATGAATACTTCTTTGG+AGG - chr8_2:4057788-4057807 None:intergenic 30.0%
ATTTGATTAGGGAAAAAGGT+TGG + chr8_2:4058026-4058045 Msa1228610:intron 30.0%
CCACTACATCAATAATTCTT+TGG - chr8_2:4058102-4058121 None:intergenic 30.0%
CCAAAGAATTATTGATGTAG+TGG + chr8_2:4058099-4058118 Msa1228610:CDS 30.0%
!!! TTGATATCACTTTTTCTGGA+GGG - chr8_2:4058141-4058160 None:intergenic 30.0%
!!! TTTGATATCACTTTTTCTGG+AGG - chr8_2:4058142-4058161 None:intergenic 30.0%
ATATCAAATGTGGCTGATTA+TGG + chr8_2:4058154-4058173 Msa1228610:CDS 30.0%
TTAGATGAATCAGTTAGAAG+TGG + chr8_2:4058208-4058227 Msa1228610:CDS 30.0%
AGTTAGAAGTGGAAAGATTA+AGG + chr8_2:4058219-4058238 Msa1228610:CDS 30.0%
CATTGACCATGGAAAAATGT+TGG - chr8_2:4054576-4054595 None:intergenic 35.0%
!!! ACAAGTTTTGAGGAAATGGA+AGG - chr8_2:4054638-4054657 None:intergenic 35.0%
!!! GCAAACAAGTTTTGAGGAAA+TGG - chr8_2:4054642-4054661 None:intergenic 35.0%
!! GTGTGGGTTGATTACATATT+AGG - chr8_2:4054877-4054896 None:intergenic 35.0%
ATAGAGAGAAAACTCATTCG+AGG - chr8_2:4054930-4054949 None:intergenic 35.0%
GAGATGAAAATTCGTCTCAT+AGG - chr8_2:4054966-4054985 None:intergenic 35.0%
TTACAAATCATGGAATCCCA+GGG + chr8_2:4055034-4055053 Msa1228610:intron 35.0%
TCATTATGACCTTTATCCCT+GGG - chr8_2:4055053-4055072 None:intergenic 35.0%
ATCATTATGACCTTTATCCC+TGG - chr8_2:4055054-4055073 None:intergenic 35.0%
!! AGTGCATAAGAGTATTCATG+TGG + chr8_2:4055085-4055104 Msa1228610:intron 35.0%
!! GTGCATAAGAGTATTCATGT+GGG + chr8_2:4055086-4055105 Msa1228610:intron 35.0%
CACTTTACTATGAGTCTCTA+TGG - chr8_2:4055118-4055137 None:intergenic 35.0%
! CTAAACTATGGTTAGTTGGT+AGG - chr8_2:4055230-4055249 None:intergenic 35.0%
CAAATGCGACCTCAATATTA+AGG - chr8_2:4055362-4055381 None:intergenic 35.0%
! TTGACGACAATTTAAAGCCA+AGG + chr8_2:4055389-4055408 Msa1228610:intron 35.0%
GTAAGAGTCCAAATTCAACA+AGG - chr8_2:4055608-4055627 None:intergenic 35.0%
GGTTACAGCTGAATTGAATT+TGG + chr8_2:4055883-4055902 Msa1228610:intron 35.0%
!!! TGAATTTGGCTTTTATGGAG+TGG + chr8_2:4055897-4055916 Msa1228610:intron 35.0%
GGCCTATTAGTGTAATAATG+AGG + chr8_2:4056017-4056036 Msa1228610:intron 35.0%
! AACAGTTCGGTTTTCTTTCT+TGG - chr8_2:4056060-4056079 None:intergenic 35.0%
AGAAAACCGAACTGTTACAA+TGG + chr8_2:4056064-4056083 Msa1228610:intron 35.0%
ACCAAACCATTGTAACAGTT+CGG - chr8_2:4056073-4056092 None:intergenic 35.0%
TTGATCAGTTCGTGAACTAT+CGG + chr8_2:4056235-4056254 Msa1228610:intron 35.0%
CCTGAAACCTTATAAGACAT+TGG - chr8_2:4056424-4056443 None:intergenic 35.0%
CCAATGTCTTATAAGGTTTC+AGG + chr8_2:4056421-4056440 Msa1228610:intron 35.0%
ACCAAAGAATCATAACTCTG+GGG - chr8_2:4056475-4056494 None:intergenic 35.0%
CACCAAAGAATCATAACTCT+GGG - chr8_2:4056476-4056495 None:intergenic 35.0%
ACACCAAAGAATCATAACTC+TGG - chr8_2:4056477-4056496 None:intergenic 35.0%
TAGATGAACACACCAAGATT+AGG - chr8_2:4056643-4056662 None:intergenic 35.0%
CTATAACCAATACTAACCTG+AGG - chr8_2:4056692-4056711 None:intergenic 35.0%
!! CTCAGGTTAGTATTGGTTAT+AGG + chr8_2:4056690-4056709 Msa1228610:intron 35.0%
!! GCATGTAGTGGATTTATCTT+TGG + chr8_2:4056991-4057010 Msa1228610:CDS 35.0%
CTCTTTCGAGATATATCGAT+TGG + chr8_2:4057165-4057184 Msa1228610:CDS 35.0%
!! ACTTTTGTTTGTCAACACTG+AGG - chr8_2:4057263-4057282 None:intergenic 35.0%
!! TCAGTGTTGACAAACAAAAG+TGG + chr8_2:4057262-4057281 Msa1228610:intron 35.0%
GGCTAACTATACCATGTTTA+TGG + chr8_2:4057283-4057302 Msa1228610:intron 35.0%
! GATTTGAATAGTGATGGTGA+TGG + chr8_2:4057464-4057483 Msa1228610:CDS 35.0%
TAGAAATGTCGATACTGCAA+AGG - chr8_2:4057510-4057529 None:intergenic 35.0%
! GTATCGACATTTCTAATCGA+AGG + chr8_2:4057515-4057534 Msa1228610:intron 35.0%
ACCATAGTTTCACTTCATGT+AGG + chr8_2:4057690-4057709 Msa1228610:intron 35.0%
TGCAGCATATAAAGAAGAAG+GGG + chr8_2:4057721-4057740 Msa1228610:CDS 35.0%
AATTGAGTCAGCACTTCAAA+AGG + chr8_2:4057868-4057887 Msa1228610:CDS 35.0%
!!! TATTTTTGGTCCTTACCTGA+TGG - chr8_2:4057931-4057950 None:intergenic 35.0%
! TTCATCTAAAGCCAATGGAA+TGG - chr8_2:4058197-4058216 None:intergenic 35.0%
! ACTGATTCATCTAAAGCCAA+TGG - chr8_2:4058202-4058221 None:intergenic 35.0%
AGAAGTGGAAAGATTAAGGA+AGG + chr8_2:4058223-4058242 Msa1228610:CDS 35.0%
!!! GGGATCAGCTATTTTTCAAT+GGG + chr8_2:4058288-4058307 Msa1228610:CDS 35.0%
!!! GGATCAGCTATTTTTCAATG+GGG + chr8_2:4058289-4058308 Msa1228610:CDS 35.0%
!!! GCTATTTTTCAATGGGGATA+AGG + chr8_2:4058295-4058314 Msa1228610:CDS 35.0%
! GTTGGTAGATACATTGACCA+TGG - chr8_2:4054587-4054606 None:intergenic 40.0%
GAAATGGAAGGTGATAAGAG+GGG - chr8_2:4054626-4054645 None:intergenic 40.0%
GGAAATGGAAGGTGATAAGA+GGG - chr8_2:4054627-4054646 None:intergenic 40.0%
AGGAAATGGAAGGTGATAAG+AGG - chr8_2:4054628-4054647 None:intergenic 40.0%
! TCTAAGACATACCTTGGCAA+AGG - chr8_2:4054695-4054714 None:intergenic 40.0%
CAATCACAATCGTCATCACT+AGG + chr8_2:4054840-4054859 Msa1228610:intron 40.0%
GTTACAAATCATGGAATCCC+AGG + chr8_2:4055033-4055052 Msa1228610:intron 40.0%
TAGGTGGTTAGGAGTTAGTT+AGG - chr8_2:4055206-4055225 None:intergenic 40.0%
!! CTATGGTTAGTTGGTAGGTT+AGG - chr8_2:4055225-4055244 None:intergenic 40.0%
AAAAAAACTGCACAGGAGGA+AGG - chr8_2:4055472-4055491 None:intergenic 40.0%
TCCTGCATCCTTGTTGAATT+TGG + chr8_2:4055597-4055616 Msa1228610:intron 40.0%
TCCAAATTCAACAAGGATGC+AGG - chr8_2:4055601-4055620 None:intergenic 40.0%
TTACTCTCAGTGCCATAACT+TGG + chr8_2:4055624-4055643 Msa1228610:intron 40.0%
!! CTTTGCAGACTTGTTAGTCA+AGG + chr8_2:4055682-4055701 Msa1228610:intron 40.0%
ACCGAACTGTTACAATGGTT+TGG + chr8_2:4056069-4056088 Msa1228610:intron 40.0%
TGAACCAAATCGTTAATGGC+CGG + chr8_2:4056098-4056117 Msa1228610:intron 40.0%
!!! ATATAGTTTTGGTTCAGGGC+CGG - chr8_2:4056120-4056139 None:intergenic 40.0%
GTGAACTATCGGTCATAGTT+CGG + chr8_2:4056246-4056265 Msa1228610:intron 40.0%
AGTTTCTCTCTTCCCTAACA+AGG + chr8_2:4056500-4056519 Msa1228610:intron 40.0%
TGCTTGATGTTTATGGTTGC+AGG + chr8_2:4056536-4056555 Msa1228610:intron 40.0%
TTGATGTTTATGGTTGCAGG+TGG + chr8_2:4056539-4056558 Msa1228610:intron 40.0%
CTTGACCACTTTATCAGTAG+AGG + chr8_2:4056568-4056587 Msa1228610:CDS 40.0%
AAGATTAGGTCAACATCAGC+TGG - chr8_2:4056629-4056648 None:intergenic 40.0%
AGCTGATGTTGACCTAATCT+TGG + chr8_2:4056628-4056647 Msa1228610:CDS 40.0%
!! TCAGATGATCTTTTTGGCAC+TGG + chr8_2:4056665-4056684 Msa1228610:CDS 40.0%
AGTTTCTGCAATGTACTTCC+TGG - chr8_2:4056815-4056834 None:intergenic 40.0%
GCTGTAATGTTATAAGCTGC+TGG - chr8_2:4056970-4056989 None:intergenic 40.0%
AACATTACAGCTGCATGTAG+TGG + chr8_2:4056979-4056998 Msa1228610:CDS 40.0%
TATCAGCTGCTAGTCACATT+AGG + chr8_2:4057019-4057038 Msa1228610:CDS 40.0%
ATCAGCTGCTAGTCACATTA+GGG + chr8_2:4057020-4057039 Msa1228610:CDS 40.0%
!! ATTTTGTTTGGAGATGCTGC+TGG + chr8_2:4057206-4057225 Msa1228610:CDS 40.0%
TTGTTTGTCAACACTGAGGA+AGG - chr8_2:4057259-4057278 None:intergenic 40.0%
ATGTCGATACTGCAAAGGTA+AGG - chr8_2:4057505-4057524 None:intergenic 40.0%
!! CAGCACTGACACATATACAT+TGG - chr8_2:4057623-4057642 None:intergenic 40.0%
GCCTACATGAAGTGAAACTA+TGG - chr8_2:4057694-4057713 None:intergenic 40.0%
!! AGTGCTGACTCAATTGACTT+TGG - chr8_2:4057863-4057882 None:intergenic 40.0%
! GGACAAATTATTGCTGCTTC+TGG + chr8_2:4058244-4058263 Msa1228610:CDS 40.0%
!! ATTATTGCTGCTTCTGGCTT+TGG + chr8_2:4058250-4058269 Msa1228610:CDS 40.0%
!!! GGGGATCAGCTATTTTTCAA+TGG + chr8_2:4058287-4058306 Msa1228610:CDS 40.0%
GGGATAAGGTCTTACTTTGA+GGG + chr8_2:4058309-4058328 Msa1228610:exon 40.0%
GGAAGATGAAGGAGTGAAGT+TGG - chr8_2:4054605-4054624 None:intergenic 45.0%
GTGATAAGAGGGGAAGATGA+AGG - chr8_2:4054616-4054635 None:intergenic 45.0%
ATACCTTGGCAAAGGAGGTT+GGG - chr8_2:4054687-4054706 None:intergenic 45.0%
AAGACATACCTTGGCAAAGG+AGG - chr8_2:4054692-4054711 None:intergenic 45.0%
TCATGGAATCCCAGGGATAA+AGG + chr8_2:4055041-4055060 Msa1228610:intron 45.0%
!! AGTTGGTAGGTTAGGTGGTT+AGG - chr8_2:4055217-4055236 None:intergenic 45.0%
!! TGGTTAGTTGGTAGGTTAGG+TGG - chr8_2:4055222-4055241 None:intergenic 45.0%
GAATGGATAAGTGTTCGCAC+CGG + chr8_2:4055790-4055809 Msa1228610:CDS 45.0%
AATGGATAAGTGTTCGCACC+GGG + chr8_2:4055791-4055810 Msa1228610:CDS 45.0%
AACTCGACGTTTACGAATCC+CGG - chr8_2:4055812-4055831 None:intergenic 45.0%
CGTAAACGTCGAGTTCTTTC+AGG + chr8_2:4055817-4055836 Msa1228610:CDS 45.0%
!! CTCTTTCGTGCGATTTGGTT+CGG + chr8_2:4056269-4056288 Msa1228610:intron 45.0%
!! AATCATAACTCTGGGGCTAC+GGG - chr8_2:4056468-4056487 None:intergenic 45.0%
!! GAATCATAACTCTGGGGCTA+CGG - chr8_2:4056469-4056488 None:intergenic 45.0%
GCCCCAGAGTTATGATTCTT+TGG + chr8_2:4056471-4056490 Msa1228610:intron 45.0%
TGCTGCCTCTACTGATAAAG+TGG - chr8_2:4056576-4056595 None:intergenic 45.0%
CTTTATCAGTAGAGGCAGCA+AGG + chr8_2:4056576-4056595 Msa1228610:CDS 45.0%
AGCAAGGAAAGCTCTTGAGA+TGG + chr8_2:4056592-4056611 Msa1228610:CDS 45.0%
GAAAGCTCTTGAGATGGCAA+AGG + chr8_2:4056598-4056617 Msa1228610:CDS 45.0%
ACTGGTCCTCAGGTTAGTAT+TGG + chr8_2:4056683-4056702 Msa1228610:intron 45.0%
TCAGCTGCTAGTCACATTAG+GGG + chr8_2:4057021-4057040 Msa1228610:CDS 45.0%
! TTTCTAATCGAAGGCGTGTC+CGG + chr8_2:4057524-4057543 Msa1228610:intron 45.0%
GAGAAGTAACCAGTCAATGC+TGG - chr8_2:4057909-4057928 None:intergenic 45.0%
! TGACTGGTTACTTCTCCATC+AGG + chr8_2:4057913-4057932 Msa1228610:CDS 45.0%
GGTTACTTCTCCATCAGGTA+AGG + chr8_2:4057918-4057937 Msa1228610:intron 45.0%
AAGTGCAGCTTCCATTCCAT+TGG + chr8_2:4058183-4058202 Msa1228610:CDS 45.0%
!! CTTTGGTGCTGGTCTTACTT+GGG + chr8_2:4058267-4058286 Msa1228610:CDS 45.0%
!! TTTGGTGCTGGTCTTACTTG+GGG + chr8_2:4058268-4058287 Msa1228610:CDS 45.0%
GGGGATAAGGTCTTACTTTG+AGG + chr8_2:4058308-4058327 Msa1228610:exon 45.0%
!! TATATTGATAAAATATTAAT+AGG + chr8_2:4055142-4055161 Msa1228610:intron 5.0%
GCAAAGGAGGTTGGGAATCA+TGG - chr8_2:4054679-4054698 None:intergenic 50.0%
ATTCCCAACCTCCTTTGCCA+AGG + chr8_2:4054681-4054700 Msa1228610:CDS 50.0%
CATACCTTGGCAAAGGAGGT+TGG - chr8_2:4054688-4054707 None:intergenic 50.0%
TGTTAGTCAAGGCTGCAAGC+TGG + chr8_2:4055693-4055712 Msa1228610:CDS 50.0%
TTCGGCTCTTTCGTGCGATT+TGG + chr8_2:4056264-4056283 Msa1228610:intron 50.0%
!!! TCTTTTTGGCACTGGTCCTC+AGG + chr8_2:4056673-4056692 Msa1228610:CDS 50.0%
!! TGCTGGTGCTGTTCTAGTAC+AGG + chr8_2:4057223-4057242 Msa1228610:CDS 50.0%
GAGTCAGCACTTCAAAAGGC+TGG + chr8_2:4057872-4057891 Msa1228610:CDS 50.0%
!! TACCTGCATCCAGCATTGAC+TGG + chr8_2:4057897-4057916 Msa1228610:CDS 50.0%
AACCAGTCAATGCTGGATGC+AGG - chr8_2:4057902-4057921 None:intergenic 50.0%
!! GCTTTGGTGCTGGTCTTACT+TGG + chr8_2:4058266-4058285 Msa1228610:CDS 50.0%
AACTGCATCTTGTTGCCCGC+TGG + chr8_2:4055446-4055465 Msa1228610:intron 55.0%
AGTCAAGGCTGCAAGCTGGT+AGG + chr8_2:4055697-4055716 Msa1228610:CDS 55.0%
AGGGCCGGCCATTAACGATT+TGG - chr8_2:4056105-4056124 None:intergenic 55.0%
ATTGCAGGCGTGCAACTACG+AGG + chr8_2:4057421-4057440 Msa1228610:intron 55.0%
GGCTGCAAGCTGGTAGGATG+TGG + chr8_2:4055703-4055722 Msa1228610:CDS 60.0%
!! GCTGCTTCTGGCTTTGGTGC+TGG + chr8_2:4058256-4058275 Msa1228610:CDS 60.0%
TGCACAGGAGGAAGGCCAGC+GGG - chr8_2:4055464-4055483 None:intergenic 65.0%
CTGCACAGGAGGAAGGCCAG+CGG - chr8_2:4055465-4055484 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 4054472 4058446 4054472 ID=Msa1228610;Name=Msa1228610
chr8_2 mRNA 4054472 4058446 4054472 ID=Msa1228610-mRNA-1;Parent=Msa1228610;Name=Msa1228610-mRNA-1;_AED=0.09;_eAED=0.09;_QI=121|1|1|1|1|1|8|131|376
chr8_2 exon 4054472 4054702 4054472 ID=Msa1228610-mRNA-1:exon:1312;Parent=Msa1228610-mRNA-1
chr8_2 exon 4055690 4055838 4055690 ID=Msa1228610-mRNA-1:exon:1313;Parent=Msa1228610-mRNA-1
chr8_2 exon 4056558 4056694 4056558 ID=Msa1228610-mRNA-1:exon:1314;Parent=Msa1228610-mRNA-1
chr8_2 exon 4056937 4057042 4056937 ID=Msa1228610-mRNA-1:exon:1315;Parent=Msa1228610-mRNA-1
chr8_2 exon 4057126 4057244 4057126 ID=Msa1228610-mRNA-1:exon:1316;Parent=Msa1228610-mRNA-1
chr8_2 exon 4057428 4057492 4057428 ID=Msa1228610-mRNA-1:exon:1317;Parent=Msa1228610-mRNA-1
chr8_2 exon 4057712 4057934 4057712 ID=Msa1228610-mRNA-1:exon:1318;Parent=Msa1228610-mRNA-1
chr8_2 exon 4058094 4058446 4058094 ID=Msa1228610-mRNA-1:exon:1319;Parent=Msa1228610-mRNA-1
chr8_2 five_prime_UTR 4054472 4054592 4054472 ID=Msa1228610-mRNA-1:five_prime_utr;Parent=Msa1228610-mRNA-1
chr8_2 CDS 4054593 4054702 4054593 ID=Msa1228610-mRNA-1:cds;Parent=Msa1228610-mRNA-1
chr8_2 CDS 4055690 4055838 4055690 ID=Msa1228610-mRNA-1:cds;Parent=Msa1228610-mRNA-1
chr8_2 CDS 4056558 4056694 4056558 ID=Msa1228610-mRNA-1:cds;Parent=Msa1228610-mRNA-1
chr8_2 CDS 4056937 4057042 4056937 ID=Msa1228610-mRNA-1:cds;Parent=Msa1228610-mRNA-1
chr8_2 CDS 4057126 4057244 4057126 ID=Msa1228610-mRNA-1:cds;Parent=Msa1228610-mRNA-1
chr8_2 CDS 4057428 4057492 4057428 ID=Msa1228610-mRNA-1:cds;Parent=Msa1228610-mRNA-1
chr8_2 CDS 4057712 4057934 4057712 ID=Msa1228610-mRNA-1:cds;Parent=Msa1228610-mRNA-1
chr8_2 CDS 4058094 4058315 4058094 ID=Msa1228610-mRNA-1:cds;Parent=Msa1228610-mRNA-1
chr8_2 three_prime_UTR 4058316 4058446 4058316 ID=Msa1228610-mRNA-1:three_prime_utr;Parent=Msa1228610-mRNA-1
Gene Sequence

>Msa1228610

ATGTATCTACCAACTTCACTCCTTCATCTTCCCCTCTTATCACCTTCCATTTCCTCAAAACTTGTTTGCTTTAGTGCTCACAACCATGATTCCCAACCTCCTTTGCCAAGACTTGTTAGTCAAGGCTGCAAGCTGGTAGGATGTGGTTCAGCTGTGCCAACTCTTGAGATTACTAATGACGAGCTTGCAAAAATAGTTGATACTTCTGATGAATGGATAAGTGTTCGCACCGGGATTCGTAAACGTCGAGTTCTTTCAGGTGGAGAAAACTTGACCACTTTATCAGTAGAGGCAGCAAGGAAAGCTCTTGAGATGGCAAAGGTTGATCCAGCTGATGTTGACCTAATCTTGGTGTGTTCATCTACTTCAGATGATCTTTTTGGCACTGGTCCTCAGATTTCAAAACAGCTTGGCTGCAAAAAAAATCCAGCAGCTTATAACATTACAGCTGCATGTAGTGGATTTATCTTTGGTTTAATATCAGCTGCTAGTCACATTAGGGGAGCAGCATTTCAAAATGTTCTTGTAATCGGAACTGATGCTCTTTCGAGATATATCGATTGGACCGACAGAAGTTCATGTATTTTGTTTGGAGATGCTGCTGGTGCTGTTCTAGTACAGGCGTGCAACTACGAGGAAGATTGTTTATTTAGTTTTGATTTGAATAGTGATGGTGATGGATATATGCATCTGAATGCAGCATATAAAGAAGAAGGGGCTAATAATGCATCAGACTCAATTAAGGGTGAGTTGAACTTTCCTCCAAAGAAGTATTCATATTCATGCATACATATGAATGGCAAAGTAGTGTTTAAATTTGCTATACAGAGTGTGCCAAAGTCAATTGAGTCAGCACTTCAAAAGGCTGGTCTACCTGCATCCAGCATTGACTGGTTACTTCTCCATCAGGCAAACCAAAGAATTATTGATGTAGTGGCAAACAAATTAGAATTCCCTCCAGAAAAAGTGATATCAAATGTGGCTGATTATGGTAATACAAGTGCAGCTTCCATTCCATTGGCTTTAGATGAATCAGTTAGAAGTGGAAAGATTAAGGAAGGACAAATTATTGCTGCTTCTGGCTTTGGTGCTGGTCTTACTTGGGGATCAGCTATTTTTCAATGGGGATAA

Protein sequence

>Msa1228610

MYLPTSLLHLPLLSPSISSKLVCFSAHNHDSQPPLPRLVSQGCKLVGCGSAVPTLEITNDELAKIVDTSDEWISVRTGIRKRRVLSGGENLTTLSVEAARKALEMAKVDPADVDLILVCSSTSDDLFGTGPQISKQLGCKKNPAAYNITAACSGFIFGLISAASHIRGAAFQNVLVIGTDALSRYIDWTDRSSCILFGDAAGAVLVQACNYEEDCLFSFDLNSDGDGYMHLNAAYKEEGANNASDSIKGELNFPPKKYSYSCIHMNGKVVFKFAIQSVPKSIESALQKAGLPASSIDWLLLHQANQRIIDVVANKLEFPPEKVISNVADYGNTSAASIPLALDESVRSGKIKEGQIIAASGFGAGLTWGSAIFQWG*