Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688500 | XP_003612006.1 | 97.799 | 318 | 7 | 0 | 1 | 318 | 1 | 318 | 0.0 | 641 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688500 | G7KDL3 | 97.799 | 318 | 7 | 0 | 1 | 318 | 1 | 318 | 0.0 | 641 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004390 | Msa0688500 | 0.818761 | 1.655963e-52 | -8.615850e-47 |
| Msa0005050 | Msa0688500 | 0.850392 | 1.749466e-60 | -8.615850e-47 |
| Msa0010560 | Msa0688500 | 0.814490 | 1.500657e-51 | -8.615850e-47 |
| Msa0016120 | Msa0688500 | 0.807098 | 5.965796e-50 | -8.615850e-47 |
| Msa0019600 | Msa0688500 | 0.829194 | 5.899778e-55 | -8.615850e-47 |
| Msa0032370 | Msa0688500 | 0.810812 | 9.567499e-51 | -8.615850e-47 |
| Msa0035810 | Msa0688500 | 0.807878 | 4.076673e-50 | -8.615850e-47 |
| Msa0036430 | Msa0688500 | 0.800476 | 1.415669e-48 | -8.615850e-47 |
| Msa0043210 | Msa0688500 | 0.839182 | 1.846647e-57 | -8.615850e-47 |
| Msa0050040 | Msa0688500 | 0.855942 | 4.494627e-62 | -8.615850e-47 |
| Msa0050990 | Msa0688500 | 0.821386 | 4.151031e-53 | -8.615850e-47 |
| Msa0053110 | Msa0688500 | 0.860282 | 2.303432e-63 | -8.615850e-47 |
| Msa0072810 | Msa0688500 | 0.800243 | 1.579421e-48 | -8.615850e-47 |
| Msa0081010 | Msa0688500 | 0.825376 | 4.847822e-54 | -8.615850e-47 |
| Msa0083920 | Msa0688500 | 0.834898 | 2.295868e-56 | -8.615850e-47 |
| Msa0084000 | Msa0688500 | 0.810151 | 1.329415e-50 | -8.615850e-47 |
| Msa0084500 | Msa0688500 | 0.806947 | 6.422121e-50 | -8.615850e-47 |
| Msa0098440 | Msa0688500 | 0.864155 | 1.490036e-64 | -8.615850e-47 |
| Msa0101300 | Msa0688500 | 0.823044 | 1.711823e-53 | -8.615850e-47 |
| Msa0102990 | Msa0688500 | 0.856616 | 2.852068e-62 | -8.615850e-47 |
| Msa0106790 | Msa0688500 | 0.803854 | 2.857404e-49 | -8.615850e-47 |
| Msa0111750 | Msa0688500 | 0.833762 | 4.426873e-56 | -8.615850e-47 |
| Msa0114540 | Msa0688500 | -0.824552 | 7.588554e-54 | -8.615850e-47 |
| Msa0618170 | Msa0688500 | 0.814337 | 1.621678e-51 | -8.615850e-47 |
| Msa0620260 | Msa0688500 | 0.802612 | 5.166451e-49 | -8.615850e-47 |
| Msa0625890 | Msa0688500 | 0.821035 | 5.000634e-53 | -8.615850e-47 |
| Msa0641250 | Msa0688500 | 0.881430 | 2.416013e-70 | -8.615850e-47 |
| Msa0663680 | Msa0688500 | 0.831744 | 1.403180e-55 | -8.615850e-47 |
| Msa0669840 | Msa0688500 | 0.850427 | 1.709644e-60 | -8.615850e-47 |
| Msa0672110 | Msa0688500 | 0.800052 | 1.726713e-48 | -8.615850e-47 |
| Msa0678890 | Msa0688500 | 0.827003 | 1.988946e-54 | -8.615850e-47 |
| Msa0680150 | Msa0688500 | 0.863943 | 1.734510e-64 | -8.615850e-47 |
| Msa0685330 | Msa0688500 | 0.804408 | 2.191374e-49 | -8.615850e-47 |
| Msa0688500 | Msa0701960 | 0.804672 | 1.930952e-49 | -8.615850e-47 |
| Msa0688500 | Msa0707220 | 0.846662 | 1.886903e-59 | -8.615850e-47 |
| Msa0688500 | Msa0716800 | 0.932219 | 1.182822e-94 | -8.615850e-47 |
| Msa0688500 | Msa0720040 | 0.800722 | 1.261488e-48 | -8.615850e-47 |
| Msa0688500 | Msa0741900 | 0.805959 | 1.037445e-49 | -8.615850e-47 |
| Msa0688500 | Msa0747780 | 0.863390 | 2.575655e-64 | -8.615850e-47 |
| Msa0688500 | Msa0754030 | 0.812723 | 3.672165e-51 | -8.615850e-47 |
| Msa0688500 | Msa0757870 | 0.972290 | 1.589882e-134 | -8.615850e-47 |
| Msa0688500 | Msa0761580 | 0.846207 | 2.510868e-59 | -8.615850e-47 |
| Msa0688500 | Msa0764820 | 0.833722 | 4.528738e-56 | -8.615850e-47 |
| Msa0688500 | Msa0770290 | 0.811079 | 8.377334e-51 | -8.615850e-47 |
| Msa0688500 | Msa0778930 | 0.804757 | 1.852815e-49 | -8.615850e-47 |
| Msa0688500 | Msa0799240 | 0.860444 | 2.056407e-63 | -8.615850e-47 |
| Msa0688500 | Msa0807110 | 0.826576 | 2.514426e-54 | -8.615850e-47 |
| Msa0688500 | Msa0816450 | 0.805687 | 1.183384e-49 | -8.615850e-47 |
| Msa0688500 | Msa0833040 | 0.825080 | 5.696354e-54 | -8.615850e-47 |
| Msa0688500 | Msa0840500 | 0.821933 | 3.102295e-53 | -8.615850e-47 |
| Msa0688500 | Msa0849280 | 0.803045 | 4.203717e-49 | -8.615850e-47 |
| Msa0688500 | Msa0856520 | 0.801994 | 6.924887e-49 | -8.615850e-47 |
| Msa0688500 | Msa0862100 | 0.808404 | 3.149747e-50 | -8.615850e-47 |
| Msa0688500 | Msa0867350 | 0.885662 | 6.703464e-72 | -8.615850e-47 |
| Msa0688500 | Msa0872310 | 0.847117 | 1.416265e-59 | -8.615850e-47 |
| Msa0688500 | Msa0873190 | 0.823685 | 1.212544e-53 | -8.615850e-47 |
| Msa0688500 | Msa0885060 | 0.813603 | 2.354973e-51 | -8.615850e-47 |
| Msa0688500 | Msa0898730 | 0.880253 | 6.393504e-70 | -8.615850e-47 |
| Msa0688500 | Msa0905550 | 0.849212 | 3.736940e-60 | -8.615850e-47 |
| Msa0688500 | Msa0929870 | 0.847278 | 1.279599e-59 | -8.615850e-47 |
| Msa0688500 | Msa0930780 | 0.807657 | 4.541311e-50 | -8.615850e-47 |
| Msa0688500 | Msa0937550 | 0.856845 | 2.442683e-62 | -8.615850e-47 |
| Msa0688500 | Msa0938430 | 0.826486 | 2.642417e-54 | -8.615850e-47 |
| Msa0688500 | Msa0961560 | 0.801273 | 9.732325e-49 | -8.615850e-47 |
| Msa0688500 | Msa0973250 | 0.811748 | 5.994856e-51 | -8.615850e-47 |
| Msa0688500 | Msa0974750 | 0.824156 | 9.401802e-54 | -8.615850e-47 |
| Msa0688500 | Msa0975580 | 0.812571 | 3.964311e-51 | -8.615850e-47 |
| Msa0688500 | Msa0999300 | 0.816716 | 4.790340e-52 | -8.615850e-47 |
| Msa0688500 | Msa1007350 | 0.836316 | 1.005340e-56 | -8.615850e-47 |
| Msa0688500 | Msa1010840 | 0.809189 | 2.139726e-50 | -8.615850e-47 |
| Msa0688500 | Msa1032450 | 0.868409 | 6.670326e-66 | -8.615850e-47 |
| Msa0688500 | Msa1033560 | 0.823157 | 1.611449e-53 | -8.615850e-47 |
| Msa0688500 | Msa1033570 | 0.808993 | 2.356728e-50 | -8.615850e-47 |
| Msa0688500 | Msa1037890 | 0.815379 | 9.527859e-52 | -8.615850e-47 |
| Msa0688500 | Msa1037900 | 0.868042 | 8.756818e-66 | -8.615850e-47 |
| Msa0688500 | Msa1037910 | 0.837815 | 4.159604e-57 | -8.615850e-47 |
| Msa0688500 | Msa1037920 | 0.808054 | 3.738684e-50 | -8.615850e-47 |
| Msa0688500 | Msa1041530 | 0.870269 | 1.658368e-66 | -8.615850e-47 |
| Msa0688500 | Msa1042670 | 0.812554 | 3.999682e-51 | -8.615850e-47 |
| Msa0688500 | Msa1045780 | 0.846051 | 2.769074e-59 | -8.615850e-47 |
| Msa0688500 | Msa1052360 | 0.806480 | 8.060745e-50 | -8.615850e-47 |
| Msa0688500 | Msa1070420 | 0.827490 | 1.520179e-54 | -8.615850e-47 |
| Msa0688500 | Msa1073340 | 0.804696 | 1.908528e-49 | -8.615850e-47 |
| Msa0688500 | Msa1081570 | 0.871981 | 4.513983e-67 | -8.615850e-47 |
| Msa0688500 | Msa1084110 | 0.806198 | 9.243016e-50 | -8.615850e-47 |
| Msa0688500 | Msa1088130 | 0.844939 | 5.540136e-59 | -8.615850e-47 |
| Msa0688500 | Msa1096210 | 0.825364 | 4.880703e-54 | -8.615850e-47 |
| Msa0688500 | Msa1106810 | 0.808990 | 2.360945e-50 | -8.615850e-47 |
| Msa0688500 | Msa1123880 | 0.866728 | 2.306366e-65 | -8.615850e-47 |
| Msa0688500 | Msa1127140 | 0.883744 | 3.461942e-71 | -8.615850e-47 |
| Msa0688500 | Msa1129950 | 0.829279 | 5.625772e-55 | -8.615850e-47 |
| Msa0688500 | Msa1129960 | 0.879942 | 8.251609e-70 | -8.615850e-47 |
| Msa0688500 | Msa1129970 | 0.873023 | 2.026351e-67 | -8.615850e-47 |
| Msa0688500 | Msa1130010 | 0.870656 | 1.237281e-66 | -8.615850e-47 |
| Msa0688500 | Msa1130760 | 0.805955 | 1.039701e-49 | -8.615850e-47 |
| Msa0688500 | Msa1136230 | 0.836250 | 1.044851e-56 | -8.615850e-47 |
| Msa0688500 | Msa1145020 | 0.849577 | 2.956751e-60 | -8.615850e-47 |
| Msa0688500 | Msa1166400 | 0.870898 | 1.029911e-66 | -8.615850e-47 |
| Msa0688500 | Msa1169990 | 0.870284 | 1.638887e-66 | -8.615850e-47 |
| Msa0688500 | Msa1176160 | 0.828880 | 7.030558e-55 | -8.615850e-47 |
| Msa0688500 | Msa1201110 | 0.874908 | 4.675448e-68 | -8.615850e-47 |
| Msa0688500 | Msa1201160 | 0.858671 | 7.020405e-63 | -8.615850e-47 |
| Msa0688500 | Msa1228610 | 0.800358 | 1.496068e-48 | -8.615850e-47 |
| Msa0688500 | Msa1233560 | 0.816890 | 4.378425e-52 | -8.615850e-47 |
| Msa0688500 | Msa1272330 | 0.806178 | 9.333888e-50 | -8.615850e-47 |
| Msa0688500 | Msa1285900 | 0.817949 | 2.528932e-52 | -8.615850e-47 |
| Msa0688500 | Msa1294290 | 0.825482 | 4.575794e-54 | -8.615850e-47 |
| Msa0688500 | Msa1305510 | 0.840321 | 9.329802e-58 | -8.615850e-47 |
| Msa0688500 | Msa1307190 | 0.811745 | 6.003473e-51 | -8.615850e-47 |
| Msa0688500 | Msa1336780 | 0.813156 | 2.951327e-51 | -8.615850e-47 |
| Msa0688500 | Msa1355400 | 0.860893 | 1.503371e-63 | -8.615850e-47 |
| Msa0688500 | Msa1398860 | 0.818499 | 1.898549e-52 | -8.615850e-47 |
| Msa0688500 | Msa1408870 | 0.826313 | 2.905674e-54 | -8.615850e-47 |
| Msa0688500 | Msa1414930 | 0.841945 | 3.493023e-58 | -8.615850e-47 |
| Msa0688500 | Msa1420060 | 0.884897 | 1.294863e-71 | -8.615850e-47 |
| Msa0688500 | Msa1421550 | 0.850755 | 1.383228e-60 | -8.615850e-47 |
| Msa0688500 | Msa1437710 | 0.842325 | 2.770468e-58 | -8.615850e-47 |
| Msa0688500 | Msa1461060 | 0.819235 | 1.291653e-52 | -8.615850e-47 |
| Msa0130010 | Msa0688500 | 0.829727 | 4.378586e-55 | -8.615850e-47 |
| Msa0132010 | Msa0688500 | 0.827784 | 1.291914e-54 | -8.615850e-47 |
| Msa0134130 | Msa0688500 | 0.823244 | 1.537774e-53 | -8.615850e-47 |
| Msa0137150 | Msa0688500 | 0.838866 | 2.229894e-57 | -8.615850e-47 |
| Msa0141600 | Msa0688500 | 0.808661 | 2.775434e-50 | -8.615850e-47 |
| Msa0145520 | Msa0688500 | 0.814039 | 1.886937e-51 | -8.615850e-47 |
| Msa0145600 | Msa0688500 | 0.819038 | 1.432108e-52 | -8.615850e-47 |
| Msa0147560 | Msa0688500 | 0.803989 | 2.678608e-49 | -8.615850e-47 |
| Msa0147600 | Msa0688500 | 0.811124 | 8.188639e-51 | -8.615850e-47 |
| Msa0161200 | Msa0688500 | 0.811742 | 6.012421e-51 | -8.615850e-47 |
| Msa0203030 | Msa0688500 | 0.815360 | 9.619991e-52 | -8.615850e-47 |
| Msa0203160 | Msa0688500 | 0.805399 | 1.360263e-49 | -8.615850e-47 |
| Msa0212150 | Msa0688500 | 0.813854 | 2.073008e-51 | -8.615850e-47 |
| Msa0219190 | Msa0688500 | 0.875364 | 3.266597e-68 | -8.615850e-47 |
| Msa0370600 | Msa0688500 | 0.852831 | 3.566129e-61 | -8.615850e-47 |
| Msa0375680 | Msa0688500 | 0.804546 | 2.051329e-49 | -8.615850e-47 |
| Msa0406000 | Msa0688500 | 0.819959 | 8.831308e-53 | -8.615850e-47 |
| Msa0408630 | Msa0688500 | 0.823592 | 1.274746e-53 | -8.615850e-47 |
| Msa0408640 | Msa0688500 | 0.826050 | 3.354593e-54 | -8.615850e-47 |
| Msa0413930 | Msa0688500 | 0.826100 | 3.264150e-54 | -8.615850e-47 |
| Msa0418200 | Msa0688500 | 0.862614 | 4.474680e-64 | -8.615850e-47 |
| Msa0436500 | Msa0688500 | 0.844480 | 7.366177e-59 | -8.615850e-47 |
| Msa0444010 | Msa0688500 | 0.812140 | 4.925571e-51 | -8.615850e-47 |
| Msa0451400 | Msa0688500 | 0.842267 | 2.869536e-58 | -8.615850e-47 |
| Msa0453520 | Msa0688500 | 0.855225 | 7.277932e-62 | -8.615850e-47 |
| Msa0464540 | Msa0688500 | 0.862537 | 4.725399e-64 | -8.615850e-47 |
| Msa0275520 | Msa0688500 | 0.807214 | 5.638940e-50 | -8.615850e-47 |
| Msa0289920 | Msa0688500 | 0.802241 | 6.158516e-49 | -8.615850e-47 |
| Msa0298240 | Msa0688500 | 0.889371 | 2.571619e-73 | -8.615850e-47 |
| Msa0315990 | Msa0688500 | 0.812010 | 5.255400e-51 | -8.615850e-47 |
| Msa0336090 | Msa0688500 | 0.838227 | 3.259344e-57 | -8.615850e-47 |
| Msa0337850 | Msa0688500 | 0.826350 | 2.846544e-54 | -8.615850e-47 |
| Msa0351770 | Msa0688500 | 0.802145 | 6.446739e-49 | -8.615850e-47 |
| Msa0359250 | Msa0688500 | 0.838125 | 3.463047e-57 | -8.615850e-47 |
| Msa0361260 | Msa0688500 | 0.820776 | 5.737419e-53 | -8.615850e-47 |
| Msa0492190 | Msa0688500 | 0.823387 | 1.423442e-53 | -8.615850e-47 |
| Msa0506980 | Msa0688500 | 0.814563 | 1.445484e-51 | -8.615850e-47 |
| Msa0535040 | Msa0688500 | 0.820252 | 7.565101e-53 | -8.615850e-47 |
| Msa0537360 | Msa0688500 | 0.816569 | 5.168852e-52 | -8.615850e-47 |
| Msa0537920 | Msa0688500 | 0.887558 | 1.284474e-72 | -8.615850e-47 |
| Msa0538060 | Msa0688500 | 0.805459 | 1.321728e-49 | -8.615850e-47 |
| Msa0538220 | Msa0688500 | 0.910254 | 2.300737e-82 | -8.615850e-47 |
| Msa0543850 | Msa0688500 | 0.834569 | 2.779210e-56 | -8.615850e-47 |
| Msa0578320 | Msa0688500 | 0.814470 | 1.515409e-51 | -8.615850e-47 |
| Msa0585730 | Msa0688500 | 0.808568 | 2.905793e-50 | -8.615850e-47 |
| Msa0591790 | Msa0688500 | 0.820232 | 7.648307e-53 | -8.615850e-47 |
| Msa0594090 | Msa0688500 | 0.845915 | 3.014740e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688500 | MtrunA17_Chr5g0404141 | 97.799 | 318 | 7 | 0 | 1 | 318 | 1 | 318 | 0.0 | 641 |
| Msa0688500 | MtrunA17_Chr5g0404211 | 75.563 | 311 | 70 | 1 | 1 | 311 | 1 | 305 | 9.49e-177 | 491 |
| Msa0688500 | MtrunA17_Chr8g0373201 | 64.401 | 309 | 107 | 1 | 1 | 306 | 1 | 309 | 3.30e-145 | 411 |
| Msa0688500 | MtrunA17_Chr5g0404161 | 74.537 | 216 | 55 | 0 | 1 | 216 | 11 | 226 | 1.17e-114 | 330 |
| Msa0688500 | MtrunA17_Chr3g0136411 | 38.652 | 282 | 155 | 6 | 26 | 302 | 32 | 300 | 2.21e-60 | 195 |
| Msa0688500 | MtrunA17_Chr3g0123881 | 33.546 | 313 | 189 | 5 | 10 | 315 | 11 | 311 | 7.43e-53 | 176 |
| Msa0688500 | MtrunA17_Chr5g0404171 | 74.000 | 100 | 26 | 0 | 217 | 316 | 1 | 100 | 7.59e-52 | 166 |
| Msa0688500 | MtrunA17_Chr2g0279171 | 30.928 | 291 | 181 | 7 | 18 | 302 | 25 | 301 | 4.78e-46 | 158 |
| Msa0688500 | MtrunA17_Chr5g0426241 | 30.034 | 293 | 180 | 5 | 19 | 302 | 22 | 298 | 3.58e-44 | 153 |
| Msa0688500 | MtrunA17_Chr8g0382001 | 36.000 | 125 | 68 | 1 | 20 | 144 | 23 | 135 | 5.35e-21 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688500 | AT2G18360.1 | 55.663 | 309 | 133 | 1 | 1 | 305 | 1 | 309 | 1.99e-129 | 372 |
| Msa0688500 | AT4G36610.1 | 53.205 | 312 | 144 | 1 | 1 | 310 | 1 | 312 | 2.90e-118 | 343 |
| Msa0688500 | AT2G18360.2 | 53.309 | 272 | 123 | 1 | 1 | 268 | 1 | 272 | 2.95e-106 | 311 |
| Msa0688500 | AT5G21950.1 | 34.843 | 287 | 176 | 4 | 19 | 302 | 23 | 301 | 1.33e-55 | 183 |
| Msa0688500 | AT5G21950.6 | 34.843 | 287 | 176 | 4 | 19 | 302 | 75 | 353 | 9.06e-55 | 182 |
| Msa0688500 | AT1G78210.1 | 34.247 | 292 | 176 | 5 | 17 | 302 | 20 | 301 | 1.04e-50 | 171 |
| Msa0688500 | AT4G39955.1 | 34.314 | 306 | 176 | 7 | 19 | 315 | 22 | 311 | 4.58e-49 | 167 |
| Msa0688500 | AT4G33180.1 | 31.849 | 292 | 186 | 5 | 16 | 302 | 21 | 304 | 1.92e-48 | 164 |
| Msa0688500 | AT5G21950.7 | 34.783 | 253 | 154 | 4 | 19 | 268 | 23 | 267 | 1.13e-47 | 161 |
| Msa0688500 | AT5G09430.1 | 30.537 | 298 | 175 | 8 | 19 | 302 | 28 | 307 | 4.40e-41 | 145 |
| Msa0688500 | AT1G72620.1 | 30.405 | 296 | 178 | 10 | 21 | 305 | 56 | 334 | 5.68e-39 | 140 |
| Msa0688500 | AT1G17430.1 | 31.104 | 299 | 172 | 11 | 21 | 304 | 52 | 331 | 3.13e-38 | 138 |
| Msa0688500 | AT5G21950.3 | 34.328 | 201 | 123 | 2 | 19 | 218 | 23 | 215 | 1.08e-34 | 126 |
| Msa0688500 | AT5G21950.2 | 34.328 | 201 | 123 | 2 | 19 | 218 | 23 | 215 | 1.08e-34 | 126 |
| Msa0688500 | AT5G21950.5 | 34.328 | 201 | 123 | 2 | 19 | 218 | 75 | 267 | 4.69e-34 | 126 |
| Msa0688500 | AT5G21950.4 | 34.328 | 201 | 123 | 2 | 19 | 218 | 75 | 267 | 4.69e-34 | 126 |
| Msa0688500 | AT4G33180.2 | 31.373 | 204 | 129 | 3 | 16 | 216 | 21 | 216 | 2.24e-30 | 115 |
Find 97 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTACCTGCGAAAATTT+TGG | 0.091229 | 4_4:-54602812 | None:intergenic |
| TGGCTTCGTGGGTTTGGATA+TGG | 0.171944 | 4_4:-54599157 | None:intergenic |
| CTGACAAACAAGCGCTTAAT+TGG | 0.200768 | 4_4:-54603380 | None:intergenic |
| CAGGTACAGTTATGAGATTT+TGG | 0.229326 | 4_4:+54599091 | Msa0688500:CDS |
| TGAACACGGTGAACGTAATT+TGG | 0.258916 | 4_4:+54599007 | Msa0688500:CDS |
| GGCTTCGTGGGTTTGGATAT+GGG | 0.272429 | 4_4:-54599156 | None:intergenic |
| ATAGCATTTATATTAGCTTT+TGG | 0.275164 | 4_4:-54603423 | None:intergenic |
| CACCACTGGCTTCGTGGGTT+TGG | 0.304012 | 4_4:-54599163 | None:intergenic |
| AGTAGTATATTTATAATATC+TGG | 0.309196 | 4_4:+54603448 | Msa0688500:three_prime_UTR |
| CGTGGGTTTGGATATGGGTT+TGG | 0.310100 | 4_4:-54599151 | None:intergenic |
| GAATATGCCAACGGTGTCTT+TGG | 0.318807 | 4_4:+54603324 | Msa0688500:three_prime_UTR |
| AGCGACCATGTGTTTATAAT+AGG | 0.329987 | 4_4:+54603201 | Msa0688500:CDS |
| GTGGGTTTGGATATGGGTTT+GGG | 0.353524 | 4_4:-54599150 | None:intergenic |
| TCATCAAGCATAATATGAAT+TGG | 0.356245 | 4_4:-54603273 | None:intergenic |
| GCATATTCATTGATATGAAC+TGG | 0.358339 | 4_4:-54603309 | None:intergenic |
| CAATGACCGGTCCGTCTTAT+CGG | 0.366913 | 4_4:-54599304 | None:intergenic |
| GGTAGTAAGTGGTGCAGTTT+TGG | 0.371501 | 4_4:+54599461 | Msa0688500:CDS |
| TCTCATCAAGGACTTTCTTA+AGG | 0.375056 | 4_4:+54599626 | Msa0688500:CDS |
| TCAAGCCGAGTGCTTGGCGG+TGG | 0.379391 | 4_4:+54599332 | Msa0688500:CDS |
| GACTTGGAAATGGTGTTAGA+AGG | 0.380475 | 4_4:-54599117 | None:intergenic |
| TGCTGGATTCTCTTCTTGTT+CGG | 0.380760 | 4_4:+54599521 | Msa0688500:CDS |
| CCTTAAGCAATTTCTTGCTT+CGG | 0.386650 | 4_4:+54603226 | Msa0688500:CDS |
| CTCCACGGCTTCTGCGGTGA+TGG | 0.387211 | 4_4:+54599192 | Msa0688500:CDS |
| TGGAATGGTGGCGTTTAAAA+TGG | 0.401285 | 4_4:+54599407 | Msa0688500:CDS |
| GATACATATTTACAGGAAGC+TGG | 0.411250 | 4_4:+54603124 | Msa0688500:intron |
| TTAATGCCATCTTCTGTTGA+AGG | 0.421465 | 4_4:+54599549 | Msa0688500:CDS |
| CAAGCCGAGTGCTTGGCGGT+GGG | 0.422769 | 4_4:+54599333 | Msa0688500:CDS |
| TAATTTGGACACTGGTTAGT+TGG | 0.431991 | 4_4:+54599022 | Msa0688500:CDS |
| AAAATGGCTGAGATGTATAG+TGG | 0.456525 | 4_4:+54599423 | Msa0688500:CDS |
| CGATAAGACGGACCGGTCAT+TGG | 0.462509 | 4_4:+54599305 | Msa0688500:CDS |
| GCAGTACCAAATCAACCCTT+TGG | 0.464222 | 4_4:+54599227 | Msa0688500:CDS |
| TGCAGGTGATGTTCTCAAAT+CGG | 0.466616 | 4_4:+54602732 | Msa0688500:intron |
| CAAAATCTCATAACTGTACC+TGG | 0.470680 | 4_4:-54599090 | None:intergenic |
| GAGAACCACCACTGGCTTCG+TGG | 0.486575 | 4_4:-54599169 | None:intergenic |
| TGGATTCAGTTATGGTGGAA+TGG | 0.487428 | 4_4:+54599392 | Msa0688500:CDS |
| GCAGCGAATACATCTTCTGT+GGG | 0.489370 | 4_4:+54602969 | Msa0688500:intron |
| TTCACTCCTTCAACAGAAGA+TGG | 0.491079 | 4_4:-54599555 | None:intergenic |
| GTGAAGACACTTCTTTCTGT+TGG | 0.492067 | 4_4:+54599573 | Msa0688500:CDS |
| CCGAAGCAAGAAATTGCTTA+AGG | 0.494759 | 4_4:-54603226 | None:intergenic |
| AGTAAGGCAGTTGAAGATGC+TGG | 0.497607 | 4_4:+54599504 | Msa0688500:CDS |
| AGTTGGGTAGTGAAGATGGC+AGG | 0.500162 | 4_4:+54599039 | Msa0688500:CDS |
| GGTTAGTTGGGTAGTGAAGA+TGG | 0.500320 | 4_4:+54599035 | Msa0688500:CDS |
| GTGGAGAAATGTGTTGTGGT+TGG | 0.502378 | 4_4:+54599372 | Msa0688500:CDS |
| AAGTCCTTGATGAGACGGTT+GGG | 0.503284 | 4_4:-54599618 | None:intergenic |
| AAAGGAGTCTATGATTAGTA+AGG | 0.505701 | 4_4:+54599488 | Msa0688500:CDS |
| GTTGTGGTTGGATTCAGTTA+TGG | 0.507297 | 4_4:+54599384 | Msa0688500:CDS |
| TTGATGAGACGGTTGGGAAA+CGG | 0.512140 | 4_4:-54599612 | None:intergenic |
| AATTTGGACACTGGTTAGTT+GGG | 0.512586 | 4_4:+54599023 | Msa0688500:CDS |
| GATAAAGAAGGCTGGCCACT+TGG | 0.513619 | 4_4:+54603169 | Msa0688500:CDS |
| ATACATATTTACAGGAAGCT+GGG | 0.518388 | 4_4:+54603125 | Msa0688500:intron |
| AAAATACGCTGTTTATGTAC+CGG | 0.520843 | 4_4:+54599254 | Msa0688500:CDS |
| GTCCATCACCGCAGAAGCCG+TGG | 0.529252 | 4_4:-54599194 | None:intergenic |
| GTCTTTGTAGCTAATGACTA+AGG | 0.531626 | 4_4:-54602780 | None:intergenic |
| TGCAGCGAATACATCTTCTG+TGG | 0.532773 | 4_4:+54602968 | Msa0688500:intron |
| GTTTCCCAACCGTCTCATCA+AGG | 0.533356 | 4_4:+54599614 | Msa0688500:CDS |
| CGGTGGGGTTAAAGAAACTC+GGG | 0.534386 | 4_4:+54599349 | Msa0688500:CDS |
| AAAGTCCTTGATGAGACGGT+TGG | 0.534634 | 4_4:-54599619 | None:intergenic |
| GTGGTTGGATTCAGTTATGG+TGG | 0.535201 | 4_4:+54599387 | Msa0688500:CDS |
| TACACAGTAGAGATAGATCC+AGG | 0.536971 | 4_4:+54599072 | Msa0688500:CDS |
| AGAACCACCACTGGCTTCGT+GGG | 0.542820 | 4_4:-54599168 | None:intergenic |
| GCGGTGATGGACTAGCTACT+TGG | 0.547477 | 4_4:+54599205 | Msa0688500:CDS |
| GTTCTCCTCCACGGCTTCTG+CGG | 0.555958 | 4_4:+54599186 | Msa0688500:CDS |
| AAGCCGAGTGCTTGGCGGTG+GGG | 0.563288 | 4_4:+54599334 | Msa0688500:CDS |
| CGGCTTGAAAAGCCAATGAC+CGG | 0.568948 | 4_4:-54599317 | None:intergenic |
| AACATTACAAGAGATAAAGA+AGG | 0.574716 | 4_4:+54603157 | Msa0688500:CDS |
| GTTCAAGCCGTGGTAGTAAG+TGG | 0.575800 | 4_4:+54599450 | Msa0688500:CDS |
| CCACCAAAGAAAATTAAGTC+CGG | 0.578036 | 4_4:-54599273 | None:intergenic |
| TTACAAGAGATAAAGAAGGC+TGG | 0.588072 | 4_4:+54603161 | Msa0688500:CDS |
| TAAGAAAGTCCTTGATGAGA+CGG | 0.588220 | 4_4:-54599623 | None:intergenic |
| GGTGAACGTAATTTGGACAC+TGG | 0.590468 | 4_4:+54599014 | Msa0688500:CDS |
| GCGGTGGGGTTAAAGAAACT+CGG | 0.594063 | 4_4:+54599348 | Msa0688500:CDS |
| TAACCCCACCGCCAAGCACT+CGG | 0.595539 | 4_4:-54599337 | None:intergenic |
| TAGTGGGTTGGTTCAAGCCG+TGG | 0.596910 | 4_4:+54599440 | Msa0688500:CDS |
| ATAATCAAACATGGTGAACA+CGG | 0.596997 | 4_4:+54598993 | Msa0688500:exon |
| AACTGCACCACTTACTACCA+CGG | 0.603216 | 4_4:-54599457 | None:intergenic |
| CAAACAAATATAATCAAACA+TGG | 0.604116 | 4_4:+54598984 | Msa0688500:exon |
| CCGTGGAGGAGAACCACCAC+TGG | 0.606123 | 4_4:-54599177 | None:intergenic |
| GGCTGAGATGTATAGTGGGT+TGG | 0.606775 | 4_4:+54599428 | Msa0688500:CDS |
| TGGCTCAACCACCGATAAGA+CGG | 0.620981 | 4_4:+54599293 | Msa0688500:CDS |
| GGTGGGGTTAAAGAAACTCG+GGG | 0.622939 | 4_4:+54599350 | Msa0688500:CDS |
| GGTGATGTTCTCAAATCGGA+AGG | 0.625620 | 4_4:+54602736 | Msa0688500:intron |
| CCAGTGGTGGTTCTCCTCCA+CGG | 0.625931 | 4_4:+54599177 | Msa0688500:CDS |
| TGACCGGTCCGTCTTATCGG+TGG | 0.636640 | 4_4:-54599301 | None:intergenic |
| CATATCAATGAATATGCCAA+CGG | 0.636748 | 4_4:+54603315 | Msa0688500:three_prime_UTR |
| AAATGGCTGAGATGTATAGT+GGG | 0.642705 | 4_4:+54599424 | Msa0688500:CDS |
| TTGTTTGTCAGTTATTGTTG+TGG | 0.643684 | 4_4:+54603392 | Msa0688500:three_prime_UTR |
| CATCACCGCAGAAGCCGTGG+AGG | 0.648231 | 4_4:-54599191 | None:intergenic |
| GAACTTACCAAAGACACCGT+TGG | 0.648790 | 4_4:-54603331 | None:intergenic |
| CAACCACCGATAAGACGGAC+CGG | 0.649108 | 4_4:+54599298 | Msa0688500:CDS |
| CGGGGTGGAGAAATGTGTTG+TGG | 0.661435 | 4_4:+54599368 | Msa0688500:CDS |
| ATTCAGTTATGGTGGAATGG+TGG | 0.669440 | 4_4:+54599395 | Msa0688500:CDS |
| ATCCAAACCCACGAAGCCAG+TGG | 0.674903 | 4_4:+54599161 | Msa0688500:CDS |
| CAAACCCACGAAGCCAGTGG+TGG | 0.680443 | 4_4:+54599164 | Msa0688500:CDS |
| AGGCACCTATTATAAACACA+TGG | 0.694510 | 4_4:-54603206 | None:intergenic |
| GTCGCTCAATATGAGCCAAG+TGG | 0.710691 | 4_4:-54603184 | None:intergenic |
| CAGCGAATACATCTTCTGTG+GGG | 0.727762 | 4_4:+54602970 | Msa0688500:intron |
| GGGGTTAAAGAAACTCGGGG+TGG | 0.739841 | 4_4:+54599353 | Msa0688500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAGCAATAAATATAAA+AGG | + | chr4_4:54599899-54599918 | Msa0688500:intron | 10.0% |
| !! | ATTATTCATATTACTTAAAT+AGG | + | chr4_4:54600307-54600326 | Msa0688500:intron | 10.0% |
| !!! | GTTATACTAAAAAATTTTAA+GGG | - | chr4_4:54601334-54601353 | None:intergenic | 10.0% |
| !!! | TGTTATACTAAAAAATTTTA+AGG | - | chr4_4:54601335-54601354 | None:intergenic | 10.0% |
| !! | ATTATTTGTGTATTTAATAT+TGG | + | chr4_4:54601438-54601457 | Msa0688500:intron | 10.0% |
| !! | TTATTTGTGTATTTAATATT+GGG | + | chr4_4:54601439-54601458 | Msa0688500:intron | 10.0% |
| !!! | TAATTTATGTAAATTTTACA+TGG | + | chr4_4:54601843-54601862 | Msa0688500:intron | 10.0% |
| !!! | TAAATTAATTTTTTTTTGTC+AGG | - | chr4_4:54602212-54602231 | None:intergenic | 10.0% |
| !!! | CACTTTATTATTATTTTTTA+TGG | + | chr4_4:54602852-54602871 | Msa0688500:intron | 10.0% |
| !! | TAAAAGGTAAAAATATTGTA+TGG | + | chr4_4:54599915-54599934 | Msa0688500:intron | 15.0% |
| !! | AAAAGGTAAAAATATTGTAT+GGG | + | chr4_4:54599916-54599935 | Msa0688500:intron | 15.0% |
| !! | TGATTATAACAAATATTGTA+TGG | + | chr4_4:54599964-54599983 | Msa0688500:intron | 15.0% |
| !! | GATTATAACAAATATTGTAT+GGG | + | chr4_4:54599965-54599984 | Msa0688500:intron | 15.0% |
| !!! | ACTTTTTTCTTAAATAAAGA+AGG | - | chr4_4:54600414-54600433 | None:intergenic | 15.0% |
| !!! | AATTTTAATGTTTCACAAAA+TGG | - | chr4_4:54601952-54601971 | None:intergenic | 15.0% |
| !! | AGATCTCTTTAATAAAAAAA+GGG | - | chr4_4:54602489-54602508 | None:intergenic | 15.0% |
| !!! | TAAAATTAAAACATGTGTTT+TGG | - | chr4_4:54602910-54602929 | None:intergenic | 15.0% |
| !! | AGTAGTATATTTATAATATC+TGG | + | chr4_4:54603448-54603467 | Msa0688500:three_prime_UTR | 15.0% |
| !! | CAAACAAATATAATCAAACA+TGG | + | chr4_4:54598984-54599003 | Msa0688500:exon | 20.0% |
| !! | TCACTTAAAAAGTTTATTTG+TGG | + | chr4_4:54599759-54599778 | Msa0688500:intron | 20.0% |
| !! | TTATTTGTGGATTTAAATGA+AGG | + | chr4_4:54599772-54599791 | Msa0688500:intron | 20.0% |
| !!! | ATCAAAAGATAAGTTTTTGT+AGG | - | chr4_4:54599823-54599842 | None:intergenic | 20.0% |
| !! | TAAAGATGTTCATAAGATAT+AGG | - | chr4_4:54600033-54600052 | None:intergenic | 20.0% |
| !!! | CAATGTGATTTAAGTTTAAA+TGG | + | chr4_4:54600059-54600078 | Msa0688500:intron | 20.0% |
| !! | TTCATATTACTTAAATAGGT+CGG | + | chr4_4:54600311-54600330 | Msa0688500:intron | 20.0% |
| !!! | TTAAGCTTATTTAGCTTAAA+AGG | - | chr4_4:54600379-54600398 | None:intergenic | 20.0% |
| !!! | CTTTATTTAAGAAAAAAGTC+TGG | + | chr4_4:54600415-54600434 | Msa0688500:intron | 20.0% |
| !! | AATTGAAAAAAATACATGTG+CGG | + | chr4_4:54600632-54600651 | Msa0688500:intron | 20.0% |
| !!! | AAATTTTGTTAATGTTAGAG+AGG | + | chr4_4:54600758-54600777 | Msa0688500:intron | 20.0% |
| !!! | TGTTTTTTTAATCATGCATT+TGG | + | chr4_4:54601413-54601432 | Msa0688500:intron | 20.0% |
| !! | AAAAAAAAAAAGCAACTGAA+TGG | - | chr4_4:54601583-54601602 | None:intergenic | 20.0% |
| !!! | AGTTGCTTTTTTTTTTTTGA+AGG | + | chr4_4:54601586-54601605 | Msa0688500:intron | 20.0% |
| !! | CTATAGTCTCTATAAATAAA+AGG | - | chr4_4:54601715-54601734 | None:intergenic | 20.0% |
| !!! | CATTTTTTAATAATGTTGCA+CGG | - | chr4_4:54601915-54601934 | None:intergenic | 20.0% |
| !!! | CAATTAAGTTTGTTATTTAG+CGG | - | chr4_4:54602111-54602130 | None:intergenic | 20.0% |
| !! | ATCAAAAATTTCTCAAGAAA+AGG | - | chr4_4:54602141-54602160 | None:intergenic | 20.0% |
| !!! | AGAATTTTAACGAAAATTCT+TGG | + | chr4_4:54602439-54602458 | Msa0688500:intron | 20.0% |
| !!! | GAATTTTAACGAAAATTCTT+GGG | + | chr4_4:54602440-54602459 | Msa0688500:intron | 20.0% |
| !! | CAGATCTCTTTAATAAAAAA+AGG | - | chr4_4:54602490-54602509 | None:intergenic | 20.0% |
| !! | AACATATAATAATTCCTCAT+AGG | + | chr4_4:54602664-54602683 | Msa0688500:intron | 20.0% |
| !! | TTGCATATAAAATTTCAGAA+TGG | - | chr4_4:54603082-54603101 | None:intergenic | 20.0% |
| !!! | ATAGCATTTATATTAGCTTT+TGG | - | chr4_4:54603426-54603445 | None:intergenic | 20.0% |
| !!! | TACATAAACAGCGTATTTTT+TGG | - | chr4_4:54599253-54599272 | None:intergenic | 25.0% |
| !! | TAAGATATAGGCTTTTAAAC+AGG | - | chr4_4:54600021-54600040 | None:intergenic | 25.0% |
| !!! | CTCTTTTGATAATTAACACA+AGG | + | chr4_4:54600115-54600134 | Msa0688500:intron | 25.0% |
| ! | AATAAGCTTAAAAAAAGCCT+AGG | + | chr4_4:54600388-54600407 | Msa0688500:intron | 25.0% |
| ! | ATTGACGAAACTTACAATTT+CGG | + | chr4_4:54600783-54600802 | Msa0688500:intron | 25.0% |
| ! | ATTACAATACTTCTTGTCTT+TGG | + | chr4_4:54600864-54600883 | Msa0688500:intron | 25.0% |
| ! | TAAACAAATGTTCTTCGTTT+CGG | - | chr4_4:54601136-54601155 | None:intergenic | 25.0% |
| !!! | TAGTCATAGTCTCTATTTTT+TGG | - | chr4_4:54601749-54601768 | None:intergenic | 25.0% |
| !! | CAAATTTTCCTGTAGTAATT+TGG | - | chr4_4:54601782-54601801 | None:intergenic | 25.0% |
| ! | CAAATTACTACAGGAAAATT+TGG | + | chr4_4:54601780-54601799 | Msa0688500:intron | 25.0% |
| ! | TGATCACGCATATATATTTA+TGG | - | chr4_4:54601810-54601829 | None:intergenic | 25.0% |
| ! | AATGGTGTGTAATTAAGTAA+AGG | - | chr4_4:54602074-54602093 | None:intergenic | 25.0% |
| ! | CGCTAAATAACAAACTTAAT+TGG | + | chr4_4:54602109-54602128 | Msa0688500:intron | 25.0% |
| ! | GACTAATTAATTAGTGTCAA+AGG | + | chr4_4:54602281-54602300 | Msa0688500:intron | 25.0% |
| !! | CTATAAATAGATGTGCATTT+TGG | + | chr4_4:54602340-54602359 | Msa0688500:intron | 25.0% |
| ! | GTAAAATTGTTAACGAAGTT+TGG | - | chr4_4:54602541-54602560 | None:intergenic | 25.0% |
| ! | ATATGTTGCTCACAAAAATA+AGG | - | chr4_4:54602705-54602724 | None:intergenic | 25.0% |
| !! | AAATTACCTGCGAAAATTTT+GGG | - | chr4_4:54602814-54602833 | None:intergenic | 25.0% |
| !! | AAAATTACCTGCGAAAATTT+TGG | - | chr4_4:54602815-54602834 | None:intergenic | 25.0% |
| !! | TTTTATATGCAATTGATCTG+TGG | + | chr4_4:54603090-54603109 | Msa0688500:intron | 25.0% |
| ! | AGTGTTTGATACATATTTAC+AGG | + | chr4_4:54603117-54603136 | Msa0688500:intron | 25.0% |
| ! | AACATTACAAGAGATAAAGA+AGG | + | chr4_4:54603157-54603176 | Msa0688500:CDS | 25.0% |
| ! | TCATCAAGCATAATATGAAT+TGG | - | chr4_4:54603276-54603295 | None:intergenic | 25.0% |
| ATAATCAAACATGGTGAACA+CGG | + | chr4_4:54598993-54599012 | Msa0688500:exon | 30.0% | |
| ! | AGGTACAGTTATGAGATTTT+GGG | + | chr4_4:54599092-54599111 | Msa0688500:CDS | 30.0% |
| !!! | TTTTAGTTTGGACTTGGAAA+TGG | - | chr4_4:54599130-54599149 | None:intergenic | 30.0% |
| AAAATACGCTGTTTATGTAC+CGG | + | chr4_4:54599254-54599273 | Msa0688500:CDS | 30.0% | |
| AAAGGAGTCTATGATTAGTA+AGG | + | chr4_4:54599488-54599507 | Msa0688500:CDS | 30.0% | |
| TTCTTAAATAAAGAAGGCCT+AGG | - | chr4_4:54600408-54600427 | None:intergenic | 30.0% | |
| ATGAAATCTAGTCGTATGTA+GGG | - | chr4_4:54600509-54600528 | None:intergenic | 30.0% | |
| AATGAAATCTAGTCGTATGT+AGG | - | chr4_4:54600510-54600529 | None:intergenic | 30.0% | |
| ACATACGACTAGATTTCATT+CGG | + | chr4_4:54600510-54600529 | Msa0688500:intron | 30.0% | |
| AATTCATCTGTTAGTCAACA+TGG | - | chr4_4:54600689-54600708 | None:intergenic | 30.0% | |
| TGACTAACAGATGAATTTGA+CGG | + | chr4_4:54600692-54600711 | Msa0688500:intron | 30.0% | |
| GCAATTCACTTAGTGTAAAT+AGG | - | chr4_4:54600815-54600834 | None:intergenic | 30.0% | |
| GAAGCTTGAAAATAAACACA+TGG | + | chr4_4:54600976-54600995 | Msa0688500:intron | 30.0% | |
| TGAAAATAAACACATGGTAC+AGG | + | chr4_4:54600982-54601001 | Msa0688500:intron | 30.0% | |
| !! | AAATTTTGATCCATAGAGTG+AGG | + | chr4_4:54601091-54601110 | Msa0688500:intron | 30.0% |
| !! | AATTTTGATCCATAGAGTGA+GGG | + | chr4_4:54601092-54601111 | Msa0688500:intron | 30.0% |
| !!! | AAAAAATTTTAAGGGCGTCA+TGG | - | chr4_4:54601326-54601345 | None:intergenic | 30.0% |
| !!! | CTAGGTACATGTGATTTTTT+CGG | - | chr4_4:54601498-54601517 | None:intergenic | 30.0% |
| ! | GATTTTCAAAAGCAACTGAA+TGG | - | chr4_4:54601613-54601632 | None:intergenic | 30.0% |
| !!! | TCATAGTCTCTATTTTTTGG+TGG | - | chr4_4:54601746-54601765 | None:intergenic | 30.0% |
| ! | TTTTCCTGTAGTAATTTGGA+CGG | - | chr4_4:54601778-54601797 | None:intergenic | 30.0% |
| TTTCACAAAATGGTTACACT+AGG | - | chr4_4:54601942-54601961 | None:intergenic | 30.0% | |
| ! | TGTTATTTAGCGGAAATCAA+GGG | - | chr4_4:54602101-54602120 | None:intergenic | 30.0% |
| !! | TTGTTATTTAGCGGAAATCA+AGG | - | chr4_4:54602102-54602121 | None:intergenic | 30.0% |
| CACTAATTAATTAGTCACAG+TGG | - | chr4_4:54602277-54602296 | None:intergenic | 30.0% | |
| ! | AAATAGATGTGCATTTTGGA+AGG | + | chr4_4:54602344-54602363 | Msa0688500:intron | 30.0% |
| AAGTGGAAGTGAAATAAATG+CGG | - | chr4_4:54602579-54602598 | None:intergenic | 30.0% | |
| ! | TTTTCCATAGTCAGAATAAG+TGG | - | chr4_4:54602596-54602615 | None:intergenic | 30.0% |
| AGCAACATATCATTAATTGC+AGG | + | chr4_4:54602715-54602734 | Msa0688500:intron | 30.0% | |
| ATACATATTTACAGGAAGCT+GGG | + | chr4_4:54603125-54603144 | Msa0688500:intron | 30.0% | |
| GCATATTCATTGATATGAAC+TGG | - | chr4_4:54603312-54603331 | None:intergenic | 30.0% | |
| CATATCAATGAATATGCCAA+CGG | + | chr4_4:54603315-54603334 | Msa0688500:three_prime_UTR | 30.0% | |
| TTGTTTGTCAGTTATTGTTG+TGG | + | chr4_4:54603392-54603411 | Msa0688500:three_prime_UTR | 30.0% | |
| ! | TAATTTGGACACTGGTTAGT+TGG | + | chr4_4:54599022-54599041 | Msa0688500:CDS | 35.0% |
| ! | AATTTGGACACTGGTTAGTT+GGG | + | chr4_4:54599023-54599042 | Msa0688500:CDS | 35.0% |
| CAAAATCTCATAACTGTACC+TGG | - | chr4_4:54599093-54599112 | None:intergenic | 35.0% | |
| ! | CAGGTACAGTTATGAGATTT+TGG | + | chr4_4:54599091-54599110 | Msa0688500:CDS | 35.0% |
| !!! | TTTGGGTTTTAGTTTGGACT+TGG | - | chr4_4:54599136-54599155 | None:intergenic | 35.0% |
| !!! | TATGGGTTTGGGTTTTAGTT+TGG | - | chr4_4:54599142-54599161 | None:intergenic | 35.0% |
| ! | GTACCGGACTTAATTTTCTT+TGG | + | chr4_4:54599270-54599289 | Msa0688500:CDS | 35.0% |
| CCACCAAAGAAAATTAAGTC+CGG | - | chr4_4:54599276-54599295 | None:intergenic | 35.0% | |
| AAAATGGCTGAGATGTATAG+TGG | + | chr4_4:54599423-54599442 | Msa0688500:CDS | 35.0% | |
| AAATGGCTGAGATGTATAGT+GGG | + | chr4_4:54599424-54599443 | Msa0688500:CDS | 35.0% | |
| TTAATGCCATCTTCTGTTGA+AGG | + | chr4_4:54599549-54599568 | Msa0688500:CDS | 35.0% | |
| TAAGAAAGTCCTTGATGAGA+CGG | - | chr4_4:54599626-54599645 | None:intergenic | 35.0% | |
| TCTCATCAAGGACTTTCTTA+AGG | + | chr4_4:54599626-54599645 | Msa0688500:CDS | 35.0% | |
| TGTGGATTTAAATGAAGGAC+CGG | + | chr4_4:54599777-54599796 | Msa0688500:intron | 35.0% | |
| GAACTAATCATTGAGCTATC+CGG | - | chr4_4:54599799-54599818 | None:intergenic | 35.0% | |
| CTTAAATAGGTCGGTCTAAT+AGG | + | chr4_4:54600320-54600339 | Msa0688500:intron | 35.0% | |
| TTTAAGAAAAAAGTCTGGCC+TGG | + | chr4_4:54600420-54600439 | Msa0688500:intron | 35.0% | |
| TAACAGATGAATTTGACGGA+GGG | + | chr4_4:54600696-54600715 | Msa0688500:intron | 35.0% | |
| GCTTAACGTTATGCAATTTC+TGG | + | chr4_4:54600726-54600745 | Msa0688500:intron | 35.0% | |
| ACGAAACTTACAATTTCGGA+GGG | + | chr4_4:54600787-54600806 | Msa0688500:intron | 35.0% | |
| AACACTGTTTGGCTATTGAA+AGG | - | chr4_4:54600916-54600935 | None:intergenic | 35.0% | |
| ATGCATGCTATAACACTGTT+TGG | - | chr4_4:54600927-54600946 | None:intergenic | 35.0% | |
| TTATAGCATGCATGCTGTAT+AGG | + | chr4_4:54600934-54600953 | Msa0688500:intron | 35.0% | |
| GGTGCAACATTAAAACTTCA+GGG | - | chr4_4:54601280-54601299 | None:intergenic | 35.0% | |
| AGGTGCAACATTAAAACTTC+AGG | - | chr4_4:54601281-54601300 | None:intergenic | 35.0% | |
| GTCGAAAGTAAAAAGCAACA+AGG | - | chr4_4:54601386-54601405 | None:intergenic | 35.0% | |
| TCTAAGTCATGAGTTCAAGA+AGG | - | chr4_4:54601528-54601547 | None:intergenic | 35.0% | |
| GTCCGAAGAGTAGATATTAT+TGG | + | chr4_4:54602515-54602534 | Msa0688500:intron | 35.0% | |
| GGCCAATAATATCTACTCTT+CGG | - | chr4_4:54602520-54602539 | None:intergenic | 35.0% | |
| ACTTCCACTTATTCTGACTA+TGG | + | chr4_4:54602589-54602608 | Msa0688500:intron | 35.0% | |
| ! | CGGTTTTTCTTATACCTATG+AGG | - | chr4_4:54602681-54602700 | None:intergenic | 35.0% |
| GTTGCTCACAAAAATAAGGT+CGG | - | chr4_4:54602701-54602720 | None:intergenic | 35.0% | |
| GTCTTTGTAGCTAATGACTA+AGG | - | chr4_4:54602783-54602802 | None:intergenic | 35.0% | |
| !!! | GTGTTTTGGAACATAGAACA+TGG | - | chr4_4:54602896-54602915 | None:intergenic | 35.0% |
| GATACATATTTACAGGAAGC+TGG | + | chr4_4:54603124-54603143 | Msa0688500:intron | 35.0% | |
| TTACAAGAGATAAAGAAGGC+TGG | + | chr4_4:54603161-54603180 | Msa0688500:CDS | 35.0% | |
| AGCGACCATGTGTTTATAAT+AGG | + | chr4_4:54603201-54603220 | Msa0688500:CDS | 35.0% | |
| AGGCACCTATTATAAACACA+TGG | - | chr4_4:54603209-54603228 | None:intergenic | 35.0% | |
| CCTTAAGCAATTTCTTGCTT+CGG | + | chr4_4:54603226-54603245 | Msa0688500:CDS | 35.0% | |
| TGAACACGGTGAACGTAATT+TGG | + | chr4_4:54599007-54599026 | Msa0688500:CDS | 40.0% | |
| TACACAGTAGAGATAGATCC+AGG | + | chr4_4:54599072-54599091 | Msa0688500:CDS | 40.0% | |
| ! | GACTTGGAAATGGTGTTAGA+AGG | - | chr4_4:54599120-54599139 | None:intergenic | 40.0% |
| !! | TTTTGGCCAAAGGGTTGATT+TGG | - | chr4_4:54599236-54599255 | None:intergenic | 40.0% |
| !!! | CAGCGTATTTTTTGGCCAAA+GGG | - | chr4_4:54599245-54599264 | None:intergenic | 40.0% |
| !!! | ACAGCGTATTTTTTGGCCAA+AGG | - | chr4_4:54599246-54599265 | None:intergenic | 40.0% |
| ! | CCGGACTTAATTTTCTTTGG+TGG | + | chr4_4:54599273-54599292 | Msa0688500:CDS | 40.0% |
| GTTGTGGTTGGATTCAGTTA+TGG | + | chr4_4:54599384-54599403 | Msa0688500:CDS | 40.0% | |
| ! | TGGATTCAGTTATGGTGGAA+TGG | + | chr4_4:54599392-54599411 | Msa0688500:CDS | 40.0% |
| ! | ATTCAGTTATGGTGGAATGG+TGG | + | chr4_4:54599395-54599414 | Msa0688500:CDS | 40.0% |
| ! | TGGAATGGTGGCGTTTAAAA+TGG | + | chr4_4:54599407-54599426 | Msa0688500:CDS | 40.0% |
| TGCTGGATTCTCTTCTTGTT+CGG | + | chr4_4:54599521-54599540 | Msa0688500:CDS | 40.0% | |
| TTCACTCCTTCAACAGAAGA+TGG | - | chr4_4:54599558-54599577 | None:intergenic | 40.0% | |
| GTGAAGACACTTCTTTCTGT+TGG | + | chr4_4:54599573-54599592 | Msa0688500:CDS | 40.0% | |
| GTCGGTCTAATAGGTTTAAG+AGG | + | chr4_4:54600329-54600348 | Msa0688500:intron | 40.0% | |
| !!! | GGTTTAAGAGGCTTTTTCAG+AGG | + | chr4_4:54600341-54600360 | Msa0688500:intron | 40.0% |
| ATCTAGTCGTATGTAGGGAT+GGG | - | chr4_4:54600504-54600523 | None:intergenic | 40.0% | |
| AATCTAGTCGTATGTAGGGA+TGG | - | chr4_4:54600505-54600524 | None:intergenic | 40.0% | |
| CTAACAGATGAATTTGACGG+AGG | + | chr4_4:54600695-54600714 | Msa0688500:intron | 40.0% | |
| AACAGATGAATTTGACGGAG+GGG | + | chr4_4:54600697-54600716 | Msa0688500:intron | 40.0% | |
| GACGAAACTTACAATTTCGG+AGG | + | chr4_4:54600786-54600805 | Msa0688500:intron | 40.0% | |
| ! | TCACACTATAAGAGCATGAG+TGG | + | chr4_4:54601007-54601026 | Msa0688500:intron | 40.0% |
| ! | CACACTATAAGAGCATGAGT+GGG | + | chr4_4:54601008-54601027 | Msa0688500:intron | 40.0% |
| ! | ACACTATAAGAGCATGAGTG+GGG | + | chr4_4:54601009-54601028 | Msa0688500:intron | 40.0% |
| TTATTCTCACCCTCACTCTA+TGG | - | chr4_4:54601104-54601123 | None:intergenic | 40.0% | |
| GAATGAGAGATGAACGCATT+AGG | - | chr4_4:54601361-54601380 | None:intergenic | 40.0% | |
| GTTCAAGAAGGTAGAAGACT+AGG | - | chr4_4:54601516-54601535 | None:intergenic | 40.0% | |
| AACTGAATGGTGAAGTGAAG+TGG | - | chr4_4:54601570-54601589 | None:intergenic | 40.0% | |
| GTAACCGTCCAAATTACTAC+AGG | + | chr4_4:54601771-54601790 | Msa0688500:intron | 40.0% | |
| TATTTAGCGGAAATCAAGGG+AGG | - | chr4_4:54602098-54602117 | None:intergenic | 40.0% | |
| ! | ATTAGTGTCAAAGGAGTGCA+TGG | + | chr4_4:54602290-54602309 | Msa0688500:intron | 40.0% |
| ! | GCATGGATTTTCAACTCTCA+CGG | + | chr4_4:54602307-54602326 | Msa0688500:intron | 40.0% |
| TGCAGGTGATGTTCTCAAAT+CGG | + | chr4_4:54602732-54602751 | Msa0688500:intron | 40.0% | |
| ! | CAACATCCCAAAATTTTCGC+AGG | + | chr4_4:54602805-54602824 | Msa0688500:CDS | 40.0% |
| GAAGATGTATTCGCTGCAAA+AGG | - | chr4_4:54602966-54602985 | None:intergenic | 40.0% | |
| ! | AGACAAACTTTTCACACCAG+AGG | + | chr4_4:54602999-54603018 | Msa0688500:CDS | 40.0% |
| ! | TTCATGTTTTGTGCAACCTC+TGG | - | chr4_4:54603018-54603037 | None:intergenic | 40.0% |
| CCGAAGCAAGAAATTGCTTA+AGG | - | chr4_4:54603229-54603248 | None:intergenic | 40.0% | |
| CTGACAAACAAGCGCTTAAT+TGG | - | chr4_4:54603383-54603402 | None:intergenic | 40.0% | |
| GGTGAACGTAATTTGGACAC+TGG | + | chr4_4:54599014-54599033 | Msa0688500:CDS | 45.0% | |
| ! | GGTTAGTTGGGTAGTGAAGA+TGG | + | chr4_4:54599035-54599054 | Msa0688500:CDS | 45.0% |
| GTGGGTTTGGATATGGGTTT+GGG | - | chr4_4:54599153-54599172 | None:intergenic | 45.0% | |
| GCAGTACCAAATCAACCCTT+TGG | + | chr4_4:54599227-54599246 | Msa0688500:CDS | 45.0% | |
| GTGGAGAAATGTGTTGTGGT+TGG | + | chr4_4:54599372-54599391 | Msa0688500:CDS | 45.0% | |
| GTGGTTGGATTCAGTTATGG+TGG | + | chr4_4:54599387-54599406 | Msa0688500:CDS | 45.0% | |
| AACTGCACCACTTACTACCA+CGG | - | chr4_4:54599460-54599479 | None:intergenic | 45.0% | |
| ! | GGTAGTAAGTGGTGCAGTTT+TGG | + | chr4_4:54599461-54599480 | Msa0688500:CDS | 45.0% |
| !!! | TGGTGCAGTTTTGGCTGTAA+AGG | + | chr4_4:54599470-54599489 | Msa0688500:CDS | 45.0% |
| AGTAAGGCAGTTGAAGATGC+TGG | + | chr4_4:54599504-54599523 | Msa0688500:CDS | 45.0% | |
| TTGATGAGACGGTTGGGAAA+CGG | - | chr4_4:54599615-54599634 | None:intergenic | 45.0% | |
| AAGTCCTTGATGAGACGGTT+GGG | - | chr4_4:54599621-54599640 | None:intergenic | 45.0% | |
| AAAGTCCTTGATGAGACGGT+TGG | - | chr4_4:54599622-54599641 | None:intergenic | 45.0% | |
| ! | AGGCTTTTAAACAGGCTAGC+AGG | - | chr4_4:54600013-54600032 | None:intergenic | 45.0% |
| TCGTATGTAGGGATGGGAAT+AGG | - | chr4_4:54600498-54600517 | None:intergenic | 45.0% | |
| CGTCATGGTTTGATGTGAGA+GGG | - | chr4_4:54601311-54601330 | None:intergenic | 45.0% | |
| GGTGATGTTCTCAAATCGGA+AGG | + | chr4_4:54602736-54602755 | Msa0688500:intron | 45.0% | |
| TGCAGCGAATACATCTTCTG+TGG | + | chr4_4:54602968-54602987 | Msa0688500:intron | 45.0% | |
| GCAGCGAATACATCTTCTGT+GGG | + | chr4_4:54602969-54602988 | Msa0688500:intron | 45.0% | |
| CAGCGAATACATCTTCTGTG+GGG | + | chr4_4:54602970-54602989 | Msa0688500:intron | 45.0% | |
| GAATATGCCAACGGTGTCTT+TGG | + | chr4_4:54603324-54603343 | Msa0688500:three_prime_UTR | 45.0% | |
| GAACTTACCAAAGACACCGT+TGG | - | chr4_4:54603334-54603353 | None:intergenic | 45.0% | |
| !! | TTTATGTATATATTATAATA+AGG | + | chr4_4:54601986-54602005 | Msa0688500:intron | 5.0% |
| !! | TTATGTATATATTATAATAA+GGG | + | chr4_4:54601987-54602006 | Msa0688500:intron | 5.0% |
| !!! | ACTTTATTATTATTTTTTAT+GGG | + | chr4_4:54602853-54602872 | Msa0688500:intron | 5.0% |
| AGTTGGGTAGTGAAGATGGC+AGG | + | chr4_4:54599039-54599058 | Msa0688500:CDS | 50.0% | |
| CGTGGGTTTGGATATGGGTT+TGG | - | chr4_4:54599154-54599173 | None:intergenic | 50.0% | |
| GGCTTCGTGGGTTTGGATAT+GGG | - | chr4_4:54599159-54599178 | None:intergenic | 50.0% | |
| TGGCTTCGTGGGTTTGGATA+TGG | - | chr4_4:54599160-54599179 | None:intergenic | 50.0% | |
| TGGCTCAACCACCGATAAGA+CGG | + | chr4_4:54599293-54599312 | Msa0688500:CDS | 50.0% | |
| CAATGACCGGTCCGTCTTAT+CGG | - | chr4_4:54599307-54599326 | None:intergenic | 50.0% | |
| CGGCTTGAAAAGCCAATGAC+CGG | - | chr4_4:54599320-54599339 | None:intergenic | 50.0% | |
| !! | TTTTCAAGCCGAGTGCTTGG+CGG | + | chr4_4:54599329-54599348 | Msa0688500:CDS | 50.0% |
| GCGGTGGGGTTAAAGAAACT+CGG | + | chr4_4:54599348-54599367 | Msa0688500:CDS | 50.0% | |
| CGGTGGGGTTAAAGAAACTC+GGG | + | chr4_4:54599349-54599368 | Msa0688500:CDS | 50.0% | |
| GGTGGGGTTAAAGAAACTCG+GGG | + | chr4_4:54599350-54599369 | Msa0688500:CDS | 50.0% | |
| !! | GGCTGAGATGTATAGTGGGT+TGG | + | chr4_4:54599428-54599447 | Msa0688500:CDS | 50.0% |
| GTTCAAGCCGTGGTAGTAAG+TGG | + | chr4_4:54599450-54599469 | Msa0688500:CDS | 50.0% | |
| GTTTCCCAACCGTCTCATCA+AGG | + | chr4_4:54599614-54599633 | Msa0688500:CDS | 50.0% | |
| GGCTGTATCAGGCTTTCAGA+AGG | - | chr4_4:54599992-54600011 | None:intergenic | 50.0% | |
| !! | TTTTTCAGAGGCCTGAGGTC+TGG | + | chr4_4:54600353-54600372 | Msa0688500:intron | 50.0% |
| AGCTTAAAAGGCCAGACCTC+AGG | - | chr4_4:54600367-54600386 | None:intergenic | 50.0% | |
| ! | AGGCTAGTAGTTTGCAGTGC+AGG | + | chr4_4:54600954-54600973 | Msa0688500:intron | 50.0% |
| TGATGTGAGAGGGTCTTGGA+AGG | - | chr4_4:54601301-54601320 | None:intergenic | 50.0% | |
| GGTTTGATGTGAGAGGGTCT+TGG | - | chr4_4:54601305-54601324 | None:intergenic | 50.0% | |
| GCGTCATGGTTTGATGTGAG+AGG | - | chr4_4:54601312-54601331 | None:intergenic | 50.0% | |
| GCGGAAATCAAGGGAGGTAA+TGG | - | chr4_4:54602092-54602111 | None:intergenic | 50.0% | |
| TTAGTCACAGTGGCGTATCC+AGG | - | chr4_4:54602267-54602286 | None:intergenic | 50.0% | |
| ! | GATAAAGAAGGCTGGCCACT+TGG | + | chr4_4:54603169-54603188 | Msa0688500:CDS | 50.0% |
| GTCGCTCAATATGAGCCAAG+TGG | - | chr4_4:54603187-54603206 | None:intergenic | 50.0% | |
| ATCCAAACCCACGAAGCCAG+TGG | + | chr4_4:54599161-54599180 | Msa0688500:CDS | 55.0% | |
| !! | AGAACCACCACTGGCTTCGT+GGG | - | chr4_4:54599171-54599190 | None:intergenic | 55.0% |
| !! | GCGGTGATGGACTAGCTACT+TGG | + | chr4_4:54599205-54599224 | Msa0688500:CDS | 55.0% |
| CAACCACCGATAAGACGGAC+CGG | + | chr4_4:54599298-54599317 | Msa0688500:CDS | 55.0% | |
| CGATAAGACGGACCGGTCAT+TGG | + | chr4_4:54599305-54599324 | Msa0688500:CDS | 55.0% | |
| !! | GGCTTTTCAAGCCGAGTGCT+TGG | + | chr4_4:54599326-54599345 | Msa0688500:CDS | 55.0% |
| GGGGTTAAAGAAACTCGGGG+TGG | + | chr4_4:54599353-54599372 | Msa0688500:CDS | 55.0% | |
| CGGGGTGGAGAAATGTGTTG+TGG | + | chr4_4:54599368-54599387 | Msa0688500:CDS | 55.0% | |
| !! | TAGTGGGTTGGTTCAAGCCG+TGG | + | chr4_4:54599440-54599459 | Msa0688500:CDS | 55.0% |
| ACAGGCTAGCAGGCTGTATC+AGG | - | chr4_4:54600003-54600022 | None:intergenic | 55.0% | |
| !!! | GAGGCTTTTTCAGAGGCCTG+AGG | + | chr4_4:54600348-54600367 | Msa0688500:intron | 55.0% |
| GAAAAAAGTCTGGCCTGGCC+TGG | + | chr4_4:54600425-54600444 | Msa0688500:intron | 55.0% | |
| TGTAGGGATGGGAATAGGCC+AGG | - | chr4_4:54600493-54600512 | None:intergenic | 55.0% | |
| TATCCAGGACCCTGGTTCAG+GGG | - | chr4_4:54602252-54602271 | None:intergenic | 55.0% | |
| GTATCCAGGACCCTGGTTCA+GGG | - | chr4_4:54602253-54602272 | None:intergenic | 55.0% | |
| !! | CACCACTGGCTTCGTGGGTT+TGG | - | chr4_4:54599166-54599185 | None:intergenic | 60.0% |
| CAAACCCACGAAGCCAGTGG+TGG | + | chr4_4:54599164-54599183 | Msa0688500:CDS | 60.0% | |
| !! | GAGAACCACCACTGGCTTCG+TGG | - | chr4_4:54599172-54599191 | None:intergenic | 60.0% |
| CCAGTGGTGGTTCTCCTCCA+CGG | + | chr4_4:54599177-54599196 | Msa0688500:CDS | 60.0% | |
| GTTCTCCTCCACGGCTTCTG+CGG | + | chr4_4:54599186-54599205 | Msa0688500:CDS | 60.0% | |
| TGACCGGTCCGTCTTATCGG+TGG | - | chr4_4:54599304-54599323 | None:intergenic | 60.0% | |
| TAACCCCACCGCCAAGCACT+CGG | - | chr4_4:54599340-54599359 | None:intergenic | 60.0% | |
| CTACGGCCTTGCCTACGACA+GGG | - | chr4_4:54600455-54600474 | None:intergenic | 60.0% | |
| ATAGGCCAGGTCGGCCTACA+GGG | - | chr4_4:54600480-54600499 | None:intergenic | 60.0% | |
| AATAGGCCAGGTCGGCCTAC+AGG | - | chr4_4:54600481-54600500 | None:intergenic | 60.0% | |
| GGGATGGGAATAGGCCAGGT+CGG | - | chr4_4:54600489-54600508 | None:intergenic | 60.0% | |
| ATCCAGGACCCTGGTTCAGG+GGG | - | chr4_4:54602251-54602270 | None:intergenic | 60.0% | |
| CGTATCCAGGACCCTGGTTC+AGG | - | chr4_4:54602254-54602273 | None:intergenic | 60.0% | |
| CCGTGGAGGAGAACCACCAC+TGG | - | chr4_4:54599180-54599199 | None:intergenic | 65.0% | |
| CATCACCGCAGAAGCCGTGG+AGG | - | chr4_4:54599194-54599213 | None:intergenic | 65.0% | |
| CTCCACGGCTTCTGCGGTGA+TGG | + | chr4_4:54599192-54599211 | Msa0688500:CDS | 65.0% | |
| GTCCATCACCGCAGAAGCCG+TGG | - | chr4_4:54599197-54599216 | None:intergenic | 65.0% | |
| TCAAGCCGAGTGCTTGGCGG+TGG | + | chr4_4:54599332-54599351 | Msa0688500:CDS | 65.0% | |
| CAAGCCGAGTGCTTGGCGGT+GGG | + | chr4_4:54599333-54599352 | Msa0688500:CDS | 65.0% | |
| AAGCCGAGTGCTTGGCGGTG+GGG | + | chr4_4:54599334-54599353 | Msa0688500:CDS | 65.0% | |
| CCTACGGCCTTGCCTACGAC+AGG | - | chr4_4:54600456-54600475 | None:intergenic | 65.0% | |
| CCTGTCGTAGGCAAGGCCGT+AGG | + | chr4_4:54600453-54600472 | Msa0688500:intron | 65.0% | |
| TAGGCCAGGTCGGCCTACAG+GGG | - | chr4_4:54600479-54600498 | None:intergenic | 65.0% | |
| ATTTCCGCGCCCCCTGAACC+AGG | + | chr4_4:54602239-54602258 | Msa0688500:intron | 65.0% | |
| TTTCCGCGCCCCCTGAACCA+GGG | + | chr4_4:54602240-54602259 | Msa0688500:intron | 65.0% | |
| CAGTGGCGTATCCAGGACCC+TGG | - | chr4_4:54602260-54602279 | None:intergenic | 65.0% | |
| TGCCTACGACAGGGCAGGCC+AGG | - | chr4_4:54600446-54600465 | None:intergenic | 70.0% | |
| GGCCTGCCCTGTCGTAGGCA+AGG | + | chr4_4:54600446-54600465 | Msa0688500:intron | 70.0% | |
| GGCCTTGCCTACGACAGGGC+AGG | - | chr4_4:54600451-54600470 | None:intergenic | 70.0% | |
| GCAAGGCCGTAGGCCCCTGT+AGG | + | chr4_4:54600463-54600482 | Msa0688500:intron | 70.0% | |
| GGTCGGCCTACAGGGGCCTA+CGG | - | chr4_4:54600472-54600491 | None:intergenic | 70.0% | |
| TAGGCCCCTGTAGGCCGACC+TGG | + | chr4_4:54600472-54600491 | Msa0688500:intron | 70.0% | |
| ACGACAGGGCAGGCCAGGCC+AGG | - | chr4_4:54600441-54600460 | None:intergenic | 75.0% | |
| GGCCTGGCCTGCCCTGTCGT+AGG | + | chr4_4:54600441-54600460 | Msa0688500:intron | 75.0% | |
| GGACCCTGGTTCAGGGGGCG+CGG | - | chr4_4:54602246-54602265 | None:intergenic | 75.0% | |
| CGCCCCCTGAACCAGGGTCC+TGG | + | chr4_4:54602246-54602265 | Msa0688500:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 54598956 | 54603471 | 54598956 | ID=Msa0688500;Name=Msa0688500 |
| chr4_4 | mRNA | 54598956 | 54603471 | 54598956 | ID=Msa0688500-mRNA-1;Parent=Msa0688500;Name=Msa0688500-mRNA-1;_AED=0.08;_eAED=0.08;_QI=47|1|1|1|1|1|4|179|318 |
| chr4_4 | exon | 54598956 | 54599647 | 54598956 | ID=Msa0688500-mRNA-1:exon:14368;Parent=Msa0688500-mRNA-1 |
| chr4_4 | exon | 54602737 | 54602826 | 54602737 | ID=Msa0688500-mRNA-1:exon:14369;Parent=Msa0688500-mRNA-1 |
| chr4_4 | exon | 54602973 | 54603040 | 54602973 | ID=Msa0688500-mRNA-1:exon:14370;Parent=Msa0688500-mRNA-1 |
| chr4_4 | exon | 54603139 | 54603471 | 54603139 | ID=Msa0688500-mRNA-1:exon:14371;Parent=Msa0688500-mRNA-1 |
| chr4_4 | five_prime_UTR | 54598956 | 54599002 | 54598956 | ID=Msa0688500-mRNA-1:five_prime_utr;Parent=Msa0688500-mRNA-1 |
| chr4_4 | CDS | 54599003 | 54599647 | 54599003 | ID=Msa0688500-mRNA-1:cds;Parent=Msa0688500-mRNA-1 |
| chr4_4 | CDS | 54602737 | 54602826 | 54602737 | ID=Msa0688500-mRNA-1:cds;Parent=Msa0688500-mRNA-1 |
| chr4_4 | CDS | 54602973 | 54603040 | 54602973 | ID=Msa0688500-mRNA-1:cds;Parent=Msa0688500-mRNA-1 |
| chr4_4 | CDS | 54603139 | 54603292 | 54603139 | ID=Msa0688500-mRNA-1:cds;Parent=Msa0688500-mRNA-1 |
| chr4_4 | three_prime_UTR | 54603293 | 54603471 | 54603293 | ID=Msa0688500-mRNA-1:three_prime_utr;Parent=Msa0688500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
