AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0553950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553950 MtrunA17_Chr4g0039801 99.737 1142 3 0 1 1142 1 1142 0.0 2368
Msa0553950 MtrunA17_Chr5g0410641 75.358 1116 249 8 43 1142 16 1121 0.0 1747
Msa0553950 MtrunA17_Chr1g0165411 71.989 1121 272 13 29 1142 20 1105 0.0 1665
Msa0553950 MtrunA17_Chr1g0165421 70.018 1124 310 11 29 1142 27 1133 0.0 1631
Msa0553950 MtrunA17_Chr7g0269741 66.109 1136 332 17 35 1142 61 1171 0.0 1473
Msa0553950 MtrunA17_Chr2g0297351 69.726 948 265 9 202 1140 88 1022 0.0 1413
Msa0553950 MtrunA17_Chr7g0274751 75.161 934 76 12 206 1139 30 807 0.0 1362
Msa0553950 MtrunA17_Chr7g0274751 93.939 33 2 0 106 138 1 33 2.52e-11 68.2
Msa0553950 MtrunA17_Chr4g0073711 48.950 952 388 19 188 1128 157 1021 0.0 876
Msa0553950 MtrunA17_Chr8g0383701 47.739 951 362 19 237 1133 215 1084 0.0 853
Msa0553950 MtrunA17_Chr8g0379241 45.506 1057 444 25 119 1128 1 972 0.0 849
Msa0553950 MtrunA17_Chr2g0284211 44.656 1048 430 20 132 1128 12 960 0.0 849
Msa0553950 MtrunA17_Chr3g0088821 50.169 887 333 17 272 1128 254 1061 0.0 845
Msa0553950 MtrunA17_Chr2g0296991 42.740 1102 453 25 111 1128 20 1027 0.0 838
Msa0553950 MtrunA17_Chr8g0352231 48.950 905 353 14 254 1128 236 1061 0.0 836
Msa0553950 MtrunA17_Chr3g0137951 46.908 938 384 17 220 1128 217 1069 0.0 828
Msa0553950 MtrunA17_Chr1g0201731 47.385 937 383 17 237 1135 223 1087 0.0 816
Msa0553950 MtrunA17_Chr1g0183381 46.837 901 392 15 233 1127 67 886 0.0 814
Msa0553950 MtrunA17_Chr3g0078671 41.204 1080 477 20 124 1128 36 1032 0.0 795
Msa0553950 MtrunA17_Chr7g0267731 47.013 904 369 16 257 1128 144 969 0.0 792
Msa0553950 MtrunA17_Chr8g0364641 42.160 1065 485 30 90 1128 5 964 0.0 787
Msa0553950 MtrunA17_Chr2g0322371 29.060 819 429 18 318 1119 47 730 8.28e-104 344
Msa0553950 MtrunA17_Chr2g0322361 31.421 802 398 27 318 1100 52 720 2.15e-102 340
Msa0553950 MtrunA17_Chr4g0046401 29.621 844 444 18 289 1119 24 730 3.16e-100 334
Msa0553950 MtrunA17_Chr4g0025201 28.434 830 451 19 305 1121 37 736 4.33e-96 323
Msa0553950 MtrunA17_Chr2g0322351 30.025 806 414 20 318 1109 49 718 1.50e-95 321
Msa0553950 MtrunA17_Chr3g0126641 68.664 217 52 4 649 856 1 210 3.87e-95 301
Msa0553950 MtrunA17_Chr1g0186381 27.566 867 457 25 280 1120 9 730 7.96e-87 297
Msa0553950 MtrunA17_Chr3g0102541 27.850 851 466 21 288 1126 21 735 1.05e-80 280
Msa0553950 MtrunA17_Chr2g0307191 27.078 842 446 21 269 1104 12 691 3.50e-79 275
Msa0553950 MtrunA17_Chr3g0102531 35.198 429 207 11 288 712 21 382 3.12e-72 256
Msa0553950 MtrunA17_Chr3g0102531 26.496 351 243 7 784 1123 382 728 3.49e-25 112
Msa0553950 MtrunA17_Chr3g0102551 35.648 432 208 11 285 712 28 393 3.57e-71 253
Msa0553950 MtrunA17_Chr3g0102551 31.132 212 145 1 822 1032 428 639 1.04e-24 111
Msa0553950 MtrunA17_Chr2g0298581 25.000 824 457 19 289 1103 19 690 1.60e-66 238
Msa0553950 MtrunA17_Chr2g0322341 33.889 360 168 7 320 678 53 343 2.14e-59 208
Msa0553950 MtrunA17_Chr3g0095791 27.072 543 317 14 574 1104 215 690 2.65e-50 190
Msa0553950 MtrunA17_Chr3g0095791 34.101 217 123 6 285 497 15 215 5.41e-29 124
Msa0553950 MtrunA17_Chr3g0077511 26.186 527 310 10 591 1104 233 693 9.73e-49 186
Msa0553950 MtrunA17_Chr3g0077511 33.333 213 123 6 289 497 19 216 1.33e-28 123
Msa0553950 MtrunA17_Chr2g0322331 28.344 314 195 6 804 1100 51 351 3.41e-30 124
Msa0553950 MtrunA17_Chr2g0307241 40.000 185 84 6 269 453 12 169 3.57e-30 119
Msa0553950 MtrunA17_Chr0c03g0490021 44.355 124 67 1 973 1096 1 122 2.05e-29 114
Msa0553950 MtrunA17_Chr3g0126661 49.573 117 41 5 220 336 5 103 1.26e-23 100
Msa0553950 MtrunA17_Chr7g0227271 37.791 172 60 4 218 385 25 153 1.66e-23 98.2
Msa0553950 MtrunA17_Chr3g0126651 75.000 56 14 0 558 613 16 71 5.35e-22 90.9
Msa0553950 MtrunA17_Chr8g0355061 63.158 57 21 0 973 1029 1 57 2.10e-20 85.9
Msa0553950 MtrunA17_Chr7g0252781 60.377 53 21 0 1076 1128 19 71 8.08e-15 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553950 AT3G03050.1 83.947 1140 173 7 9 1142 10 1145 0.0 2013
Msa0553950 AT5G16910.1 82.635 1146 187 5 4 1142 5 1145 0.0 1969
Msa0553950 AT4G38190.1 72.554 1104 266 12 30 1128 21 1092 0.0 1677
Msa0553950 AT1G02730.1 64.842 1169 352 16 10 1142 36 1181 0.0 1509
Msa0553950 AT2G33100.2 70.483 952 256 9 198 1137 95 1033 0.0 1431
Msa0553950 AT2G33100.1 70.483 952 256 9 198 1137 95 1033 0.0 1431
Msa0553950 AT1G32180.1 66.369 895 283 7 258 1141 91 978 0.0 1248
Msa0553950 AT1G32180.2 66.369 895 283 7 258 1141 91 978 0.0 1248
Msa0553950 AT5G09870.1 42.703 1110 438 24 124 1128 36 1052 0.0 862
Msa0553950 AT5G05170.1 50.847 885 329 16 272 1128 242 1048 0.0 861
Msa0553950 AT2G25540.1 44.152 1103 443 27 124 1135 30 1050 0.0 858
Msa0553950 AT5G17420.1 49.160 893 360 16 248 1128 199 1009 0.0 855
Msa0553950 AT5G64740.1 45.079 1016 412 20 167 1128 144 1067 0.0 851
Msa0553950 AT5G44030.1 43.550 1093 435 24 132 1128 26 1032 0.0 849
Msa0553950 AT4G18780.1 43.928 1054 435 22 132 1128 12 966 0.0 845
Msa0553950 AT4G32410.1 48.136 939 369 20 220 1128 213 1063 0.0 845
Msa0553950 AT2G21770.1 46.590 953 367 17 238 1133 208 1075 0.0 837
Msa0553950 AT5G44030.2 48.026 912 342 14 272 1128 227 1061 0.0 837
Msa0553950 AT4G39350.1 47.368 893 360 14 266 1128 254 1066 0.0 804
Msa0553950 AT5G44030.3 48.470 817 294 13 367 1128 9 753 0.0 755
Msa0553950 AT2G32530.1 30.498 823 406 24 273 1064 10 697 1.12e-100 336
Msa0553950 AT2G32620.1 30.130 843 424 28 306 1117 40 748 4.58e-99 332
Msa0553950 AT4G15320.5 29.371 858 447 24 273 1102 10 736 7.80e-96 323
Msa0553950 AT2G32610.1 30.057 875 431 32 293 1124 21 757 8.50e-96 323
Msa0553950 AT4G15320.3 29.487 858 446 24 273 1102 10 736 1.08e-95 322
Msa0553950 AT4G15320.4 29.466 862 456 25 273 1102 10 751 9.24e-95 320
Msa0553950 AT2G32540.1 29.020 765 402 17 313 1059 48 689 8.58e-94 317
Msa0553950 AT2G32620.3 31.647 692 326 23 306 983 40 598 3.73e-93 311
Msa0553950 AT2G32620.4 30.620 774 384 26 375 1117 1 652 7.79e-92 309
Msa0553950 AT4G15290.1 29.442 771 389 21 313 1059 48 687 2.47e-91 310
Msa0553950 AT2G32620.2 32.149 619 285 20 306 916 40 531 2.17e-85 288
Msa0553950 AT4G15320.2 28.055 802 383 22 273 1023 10 668 1.52e-80 281
Msa0553950 AT4G15320.1 27.683 820 406 23 273 1023 10 711 4.43e-79 278
Msa0553950 AT1G55850.1 36.160 401 177 9 317 712 65 391 1.78e-66 239
Msa0553950 AT1G55850.1 27.036 307 213 6 819 1117 417 720 2.35e-23 107
Msa0553950 AT4G24010.1 35.862 435 204 11 287 716 25 389 6.98e-66 238
Msa0553950 AT4G24010.1 30.403 273 179 5 805 1067 402 673 1.28e-29 127
Msa0553950 AT4G23990.1 38.551 345 157 6 369 712 116 406 2.03e-62 228
Msa0553950 AT4G23990.1 28.662 314 212 6 813 1119 434 742 1.54e-31 133
Msa0553950 AT4G24000.1 31.944 432 218 8 287 716 22 379 3.72e-59 218
Msa0553950 AT4G24000.1 26.582 316 216 8 814 1120 406 714 2.91e-28 122
Msa0553950 AT4G23990.2 28.662 314 212 6 813 1119 220 528 2.31e-31 130
Msa0553950 AT4G23990.2 38.350 206 111 4 508 712 2 192 5.78e-31 129
Msa0553950 AT4G24000.2 36.667 210 108 4 508 716 2 187 2.48e-29 124
Msa0553950 AT4G24000.2 26.899 316 215 9 814 1120 214 522 3.51e-28 121

Find 318 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACAATTCTCGAAGAAATT+TGG 0.083180 4_1:-51236956 Msa0553950:CDS
TTTAGAAGGTTTGCTCTTTA+TGG 0.101361 4_1:-51237124 Msa0553950:CDS
CCAAGTGATGAACCTCTTAT+TGG 0.178203 4_1:-51237547 Msa0553950:CDS
TGTCTATAGTTTGTGAATTA+TGG 0.184274 4_1:-51238662 Msa0553950:CDS
CAGCGTGTTGGATGGATTTA+TGG 0.187827 4_1:-51236740 Msa0553950:CDS
TCAAGTTCTGTGTTCTTATA+AGG 0.208237 4_1:+51239620 None:intergenic
GAATTGCAGGATATTAATTT+AGG 0.236683 4_1:-51240188 Msa0553950:intron
CTGCTAGCTTTGCTAATAAC+TGG 0.239243 4_1:-51238341 Msa0553950:CDS
CTACTCATTTGTAATGATTT+CGG 0.250828 4_1:+51240139 None:intergenic
CACAATTCTCGAAGAAATTT+GGG 0.254749 4_1:-51236955 Msa0553950:CDS
AGCAAGTAAATAATATTTCT+TGG 0.260566 4_1:+51235625 None:intergenic
CTGAAGAAATTTCATTCTTC+GGG 0.263526 4_1:+51236523 None:intergenic
CTACGATCCTTCACAAAATC+AGG 0.284381 4_1:+51238228 None:intergenic
TTTAAGCTGAAGTATGATTC+AGG 0.288122 4_1:+51238279 None:intergenic
GACTTTCCTGTAGGATTGTT+AGG 0.288935 4_1:+51238540 None:intergenic
CAATCAAGGTTAAGTATAAA+AGG 0.293335 4_1:+51237364 None:intergenic
TTTCTTCAGTTTCTGGGTCT+TGG 0.298421 4_1:-51235997 Msa0553950:CDS
ATGGATAAATTCCAACATTA+AGG 0.302386 4_1:+51236489 None:intergenic
TGAAACATCAGAGACAAAAT+AGG 0.307298 4_1:-51238098 Msa0553950:CDS
TCTGAAGAAATTTCATTCTT+CGG 0.312803 4_1:+51236522 None:intergenic
CTGTGGTATGGTGCTGTATA+TGG 0.316392 4_1:+51236043 None:intergenic
AAAGAGGCTTCGTACCGATA+TGG 0.318012 4_1:+51239287 None:intergenic
CTCTTGTGTTGTTCCTGCAC+TGG 0.319012 4_1:-51238728 Msa0553950:CDS
CATCTAGCTGCCGTGCTTCA+AGG 0.325137 4_1:-51236245 Msa0553950:CDS
TCTTGCTATGTTTCTGATGA+TGG 0.327737 4_1:-51238399 Msa0553950:CDS
GAAAGATGCGCGGTCTTCTT+TGG 0.328423 4_1:+51237084 None:intergenic
TATATAGATGCAGTGAAAAT+AGG 0.334238 4_1:-51239671 Msa0553950:CDS
AGATCTGTAGAACGATTTAC+TGG 0.334409 4_1:+51238597 None:intergenic
CCAAAATTTACAAGCATTAC+CGG 0.334952 4_1:+51241449 None:intergenic
CCTGTAGGATTGTTAGGACT+TGG 0.340116 4_1:+51238546 None:intergenic
CTTTCTGTAGTTGTTGCTTT+GGG 0.345629 4_1:-51237066 Msa0553950:CDS
CCTGCACTGTCCCTCTTCTC+TGG 0.348700 4_1:-51236431 Msa0553950:CDS
CCACAGATGGCTGGTGCAAA+AGG 0.351106 4_1:-51239797 Msa0553950:CDS
GGCTCTAACCAATGCATTCA+TGG 0.354035 4_1:+51237408 None:intergenic
TGGCCAAAGGAAGGGGATTT+CGG 0.355911 4_1:-51239410 Msa0553950:CDS
ATACGGATGCAGTCTGGTTA+TGG 0.356092 4_1:-51238689 Msa0553950:CDS
CCGGTAATGCTTGTAAATTT+TGG 0.362028 4_1:-51241449 Msa0553950:five_prime_UTR
GAACCGGCTGTCTGTTTAGA+AGG 0.363424 4_1:-51237138 Msa0553950:CDS
GATCTCATTGGCCAGGGACT+TGG 0.363673 4_1:-51238020 Msa0553950:CDS
TCATCAGCATTTCCAATAAG+AGG 0.368690 4_1:+51237535 None:intergenic
ATCTTCAACTTCCTTGTTAG+TGG 0.370383 4_1:+51239329 None:intergenic
GGTGGAGAAATGAGCAGTTT+TGG 0.370436 4_1:-51236289 Msa0553950:CDS
TATTCCTGGCTGTGATTCTA+AGG 0.372247 4_1:-51239762 Msa0553950:CDS
TTCCACTTCCTCCACCAAAC+GGG 0.373965 4_1:-51239568 Msa0553950:CDS
GAAACATCAGAGACAAAATA+GGG 0.374954 4_1:-51238097 Msa0553950:CDS
TTCACCTTGACTTCAAAATC+TGG 0.376408 4_1:-51236188 Msa0553950:CDS
CCACTGGAATTGAGTCAATA+AGG 0.376702 4_1:+51236921 None:intergenic
TCTTTCTGTAGTTGTTGCTT+TGG 0.377041 4_1:-51237067 Msa0553950:CDS
ACTGGAATGAACCGCCTATC+TGG 0.380979 4_1:+51235838 None:intergenic
GGTTTACTCAAAGTCGTTGC+AGG 0.382722 4_1:-51236224 Msa0553950:CDS
TGACCATGCTGGCATAATTC+AGG 0.385671 4_1:-51237968 Msa0553950:intron
ACAAGTGGTGGTTCTTTCTC+AGG 0.387209 4_1:+51238477 None:intergenic
TGAACCTTTATAGGCTCAAC+AGG 0.387620 4_1:+51238066 None:intergenic
TATTACCCGTGCACATCTAA+TGG 0.387787 4_1:-51239849 Msa0553950:CDS
TACGGATGCAGTCTGGTTAT+GGG 0.391001 4_1:-51238688 Msa0553950:CDS
TTTGAAACAAAGGGGACATA+TGG 0.392709 4_1:-51239449 Msa0553950:CDS
CAATCATCATATCACTCCTC+TGG 0.393066 4_1:-51235890 Msa0553950:CDS
GGGTCGAAATGTGCTATTCC+TGG 0.393677 4_1:-51239776 Msa0553950:CDS
CCACAGTGGAGCCGGTTACT+AGG 0.393714 4_1:-51236026 Msa0553950:CDS
CATACCTTCCCTCATTGCTT+TGG 0.393894 4_1:+51237321 None:intergenic
TTTCCGAAATCCCCTTCCTT+TGG 0.396984 4_1:+51239407 None:intergenic
GGTTGCATCAGGTTCTTAGA+TGG 0.399286 4_1:-51236598 Msa0553950:CDS
CACTGAGTTGTTGAGTCAAA+AGG 0.399721 4_1:+51235746 None:intergenic
AGGATGTGGTCACTGGTTAT+AGG 0.400288 4_1:-51236706 Msa0553950:CDS
TATAAGGCTCTTTGCATCCT+GGG 0.402620 4_1:+51239636 None:intergenic
TTATAAGGCTCTTTGCATCC+TGG 0.409387 4_1:+51239635 None:intergenic
AATTATGGTTTGCTTTCTCC+TGG 0.414418 4_1:-51238647 Msa0553950:CDS
CCAATAAGAGGTTCATCACT+TGG 0.414955 4_1:+51237547 None:intergenic
AAATGTTACGGTTGGATGTA+AGG 0.415264 4_1:+51240069 None:intergenic
TTCACCATCATGATTACAAT+TGG 0.416130 4_1:+51236098 None:intergenic
AAGGAAGGGGATTTCGGAAA+TGG 0.422255 4_1:-51239404 Msa0553950:CDS
CGATGGTTGTTTGAAACAAA+GGG 0.424075 4_1:-51239458 Msa0553950:CDS
CCTGTTCTCTTCTGAGGTGT+TGG 0.424667 4_1:+51237024 None:intergenic
TAGCAAGAAAGCTTCTCAAC+TGG 0.431099 4_1:+51238414 None:intergenic
CTCGCTATCAAGATCATCTC+TGG 0.432065 4_1:+51240009 None:intergenic
ACGATTTACTGGGCATAGCT+TGG 0.434973 4_1:+51238608 None:intergenic
TTACATCCAACCGTAACATT+TGG 0.435589 4_1:-51240067 Msa0553950:CDS
TGAGCTATCATCATGGGAAC+TGG 0.437270 4_1:+51235820 None:intergenic
GTTTCAAGTTCTCTATTCAC+TGG 0.442653 4_1:-51239884 Msa0553950:CDS
GAGTTCAAGGTCAGAATCAA+TGG 0.444934 4_1:-51238183 Msa0553950:CDS
TTACAATTGGCGGTATCATA+AGG 0.446340 4_1:+51236111 None:intergenic
GATGAAGTGGCTGTGAATAA+TGG 0.446503 4_1:-51239599 Msa0553950:CDS
ATATAAGAAGTGGTCTGGTT+TGG 0.446888 4_1:+51241343 None:intergenic
CGATTTACTGGGCATAGCTT+GGG 0.447505 4_1:+51238609 None:intergenic
CGAGGTATGGTGAGAGCACC+AGG 0.448539 4_1:+51236842 None:intergenic
CCAACACCTCAGAAGAGAAC+AGG 0.449199 4_1:-51237024 Msa0553950:CDS
GTATCCATAGGTTGGTTATC+CGG 0.451756 4_1:+51239938 None:intergenic
ATGGTTATGGCAATGCAATA+TGG 0.453385 4_1:-51239430 Msa0553950:CDS
CTCAACTTTCTGCGAGATTG+AGG 0.454526 4_1:+51239916 None:intergenic
CTGCTGTTCTCAGCCCATAT+CGG 0.455177 4_1:-51239301 Msa0553950:intron
TTTGAGATCTATGTGTGAAA+TGG 0.455259 4_1:+51241233 None:intergenic
TTGAGATCTATGTGTGAAAT+GGG 0.457222 4_1:+51241234 None:intergenic
CTTCCACTTCCTCCACCAAA+CGG 0.457767 4_1:-51239569 Msa0553950:CDS
CAATTCCCTCAAAGGTTTGA+GGG 0.458913 4_1:-51237256 Msa0553950:CDS
AAGAGGCTTCGTACCGATAT+GGG 0.460765 4_1:+51239288 None:intergenic
GTGTTATATAAGAAGTGGTC+TGG 0.463844 4_1:+51241338 None:intergenic
TTCCTTGTTAGTGGCCTCCA+TGG 0.464132 4_1:+51239338 None:intergenic
GTTAACATGAGAGCCCTTGA+TGG 0.465182 4_1:-51237184 Msa0553950:CDS
AGAGCCCTTGATGGACTTCA+AGG 0.467889 4_1:-51237175 Msa0553950:CDS
TTGCTGTGCTTGAAATTAAG+TGG 0.468667 4_1:-51236334 Msa0553950:CDS
TGCAATATGGCCAAAGGAAG+GGG 0.469151 4_1:-51239417 Msa0553950:CDS
TTGTGTTGTTCCTGCACTGG+AGG 0.472550 4_1:-51238725 Msa0553950:CDS
GCTGATGGATCTCATTGGCC+AGG 0.474596 4_1:-51238027 Msa0553950:CDS
GCGCTGATGAGAAGTCAAAC+TGG 0.475372 4_1:-51239497 Msa0553950:CDS
TGAACCTGTTGAGCCTATAA+AGG 0.476618 4_1:-51238070 Msa0553950:CDS
AGTTCTTCGGCCAAATGTTA+CGG 0.477640 4_1:+51240057 None:intergenic
AGAAAACACCTCCTAGTAAC+CGG 0.477643 4_1:+51236015 None:intergenic
TCAATACCCTCAAACCTTTG+AGG 0.479344 4_1:+51237250 None:intergenic
CAGGTTCTTAGATGGGCTAC+TGG 0.479590 4_1:-51236590 Msa0553950:CDS
AAGTATGATTCAGGATTCCT+AGG 0.480013 4_1:+51238288 None:intergenic
CTCCCATCAATCTCACTGAT+AGG 0.482130 4_1:-51236619 Msa0553950:CDS
ACAAAGGGGACATATGGTTA+TGG 0.484592 4_1:-51239443 Msa0553950:CDS
GATGATCTTGATAGCGAGCT+AGG 0.485096 4_1:-51240004 Msa0553950:CDS
GTTTCTAGAGAGAAACGTCC+AGG 0.486844 4_1:-51237457 Msa0553950:CDS
TCTCACTGATAGGTTGCATC+AGG 0.486920 4_1:-51236609 Msa0553950:CDS
CTACCTTGGAACTGTGCCAC+TGG 0.489823 4_1:+51236905 None:intergenic
CAACCTATCAGTGAGATTGA+TGG 0.492695 4_1:+51236616 None:intergenic
CTCTAGAAACATAAACAAGA+AGG 0.493620 4_1:+51237470 None:intergenic
AGAAGTGGTCTGGTTTGGTC+AGG 0.493802 4_1:+51241348 None:intergenic
TATCTTATAATCACACTCAC+AGG 0.494707 4_1:+51239706 None:intergenic
TACAATTGGCGGTATCATAA+GGG 0.495010 4_1:+51236112 None:intergenic
AGAGAACAGGGCACTAAGGA+TGG 0.496324 4_1:-51237011 Msa0553950:CDS
CAATACCCTCAAACCTTTGA+GGG 0.496350 4_1:+51237251 None:intergenic
GCGTGAGTATGATGAGTTCA+AGG 0.499184 4_1:-51238196 Msa0553950:CDS
TTTGGTGGAGGAAGTGGAAG+TGG 0.501359 4_1:+51239572 None:intergenic
TAGGCTCTATATCATGTTTG+CGG 0.502049 4_1:+51238307 None:intergenic
ACTAAACGTGACGCCTTCCG+TGG 0.504089 4_1:-51236647 Msa0553950:CDS
AGGATAGCATACCTTAATGT+TGG 0.504124 4_1:-51236500 Msa0553950:CDS
GGCCCGGTATATGTAGGAAC+CGG 0.504452 4_1:-51237154 Msa0553950:CDS
CACTCAAGGGGTGACCATGC+TGG 0.505226 4_1:-51237979 Msa0553950:CDS
ATCAAGCAGCTCACGAGGTA+TGG 0.505374 4_1:+51236829 None:intergenic
TACAGATCTTAATGTTCTGA+AGG 0.506905 4_1:-51238583 Msa0553950:CDS
GCTATGTTCAATTCCCTCAA+AGG 0.512421 4_1:-51237264 Msa0553950:CDS
GTTACTGAGGATGTGGTCAC+TGG 0.513628 4_1:-51236713 Msa0553950:CDS
TTGTTAGTGGCCTCCATGGT+CGG 0.516200 4_1:+51239342 None:intergenic
CAGCCGGTTCCTACATATAC+CGG 0.516417 4_1:+51237151 None:intergenic
GACGGATATCAACATCGGTC+AGG 0.516786 4_1:+51237497 None:intergenic
TAGTGCCCTGTTCTCTTCTG+AGG 0.517277 4_1:+51237018 None:intergenic
CCTATCTGGTCTGTACCGGC+TGG 0.517796 4_1:+51235852 None:intergenic
TGGATCAGTTACTGAGGATG+TGG 0.518142 4_1:-51236720 Msa0553950:CDS
TCGATGGTTGTTTGAAACAA+AGG 0.518208 4_1:-51239459 Msa0553950:CDS
AAAGAGTGTTATATAAGAAG+TGG 0.518228 4_1:+51241333 None:intergenic
ACACTTCACCTGAGCACTCA+AGG 0.518949 4_1:-51237993 Msa0553950:CDS
TATGTGTGACCCTCCAGTGC+AGG 0.520114 4_1:+51238715 None:intergenic
TCTAGAAACATAAACAAGAA+GGG 0.520713 4_1:+51237471 None:intergenic
TGTGATTTCATGTTGGTATG+AGG 0.522119 4_1:-51236780 Msa0553950:CDS
CCAAGTCCTAACAATCCTAC+AGG 0.524144 4_1:-51238546 Msa0553950:CDS
TGGTCACCCCTTGAGTGCTC+AGG 0.524163 4_1:+51237985 None:intergenic
TGTGTTGTTCCTGCACTGGA+GGG 0.524336 4_1:-51238724 Msa0553950:CDS
GATCAGCAAGTGGCCTACCT+TGG 0.525030 4_1:+51236891 None:intergenic
CTTCGGCCAAATGTTACGGT+TGG 0.525516 4_1:+51240061 None:intergenic
GAACACAGAACTTGATGAAG+TGG 0.527152 4_1:-51239612 Msa0553950:CDS
GACAGAGAACGAGTAATCTT+CGG 0.528240 4_1:+51241421 None:intergenic
CCAGAGAAGAGGGACAGTGC+AGG 0.528514 4_1:+51236431 None:intergenic
GAATGCATTGGTTAGAGCCT+CGG 0.531865 4_1:-51237404 Msa0553950:CDS
ATCGACCGGATGAAGTTCTT+CGG 0.533914 4_1:+51240044 None:intergenic
TCAATTCCCTCAAAGGTTTG+AGG 0.534400 4_1:-51237257 Msa0553950:CDS
ACCATCATGATTACAATTGG+CGG 0.535365 4_1:+51236101 None:intergenic
AGAAGAGGGACAGTGCAGGC+AGG 0.535477 4_1:+51236435 None:intergenic
GGAAGGTATGTGCTTTATGA+TGG 0.536478 4_1:-51237308 Msa0553950:CDS
GTGCTTGAAATTAAGTGGTC+AGG 0.536523 4_1:-51236329 Msa0553950:CDS
CAGAAGAGAACAGGGCACTA+AGG 0.537635 4_1:-51237015 Msa0553950:CDS
CTGATCTGTATATTGTCAAA+TGG 0.537846 4_1:-51236139 Msa0553950:CDS
TCACGCAAGAGAGGAAATCA+AGG 0.539271 4_1:-51238124 Msa0553950:CDS
ATATCATGTTTGCGGCAGAA+TGG 0.539475 4_1:+51238315 None:intergenic
TCTTTCAGCGTGTCTTGCAA+AGG 0.539840 4_1:-51241396 Msa0553950:five_prime_UTR
CACAGATGGCTGGTGCAAAA+GGG 0.540028 4_1:-51239796 Msa0553950:CDS
ATCATGATGGTGAACTTGAT+AGG 0.542613 4_1:-51236089 Msa0553950:CDS
AGACTTTGTCGATTTCATCA+AGG 0.542739 4_1:+51239520 None:intergenic
ATAGGAGATGGGATGTGCCC+AGG 0.542804 4_1:-51239653 Msa0553950:CDS
ATCTGGTCTGTACCGGCTGG+TGG 0.543265 4_1:+51235855 None:intergenic
ATGCAGTGAAAATAGGAGAT+GGG 0.544148 4_1:-51239664 Msa0553950:CDS
GATGCAGTGAAAATAGGAGA+TGG 0.544653 4_1:-51239665 Msa0553950:CDS
GACCTGCGACGGATAGAGTC+GGG 0.544788 4_1:+51238156 None:intergenic
TAACCGGCTCCACTGTGGTA+TGG 0.544812 4_1:+51236031 None:intergenic
AACCTATCAGTGAGATTGAT+GGG 0.545416 4_1:+51236617 None:intergenic
CTTTATCCATTAGATGTGCA+CGG 0.545565 4_1:+51239843 None:intergenic
TTTGGCCGAAGAACTTCATC+CGG 0.545571 4_1:-51240049 Msa0553950:CDS
AAAGCAACATGGATGGCTGA+TGG 0.546687 4_1:-51238042 Msa0553950:CDS
GTGTCACAGTAATAGCCAAA+AGG 0.547149 4_1:+51236366 None:intergenic
AAAAGAATGAGCTATCATCA+TGG 0.547173 4_1:+51235813 None:intergenic
ATATATAGTGATCACAATCA+AGG 0.547796 4_1:+51237350 None:intergenic
TGCTAGCTTTGCTAATAACT+GGG 0.547860 4_1:-51238340 Msa0553950:CDS
GTAAATCATCCACAGATGGC+TGG 0.551375 4_1:-51239806 Msa0553950:CDS
GAAGAATGAAATTTCTTCAG+AGG 0.551800 4_1:-51236520 Msa0553950:CDS
GAAGTGTTCAACCAAGTCCC+TGG 0.552003 4_1:+51238009 None:intergenic
ACAGGAAAGTCTGATCTGCC+AGG 0.552270 4_1:-51238528 Msa0553950:CDS
CCGGGCCTTGAAGTCCATCA+AGG 0.552866 4_1:+51237170 None:intergenic
GTTGCATCAGGTTCTTAGAT+GGG 0.553071 4_1:-51236597 Msa0553950:CDS
GATTTCGGAAATGGAAAAGA+TGG 0.553684 4_1:-51239395 Msa0553950:CDS
CACTTCACCTGAGCACTCAA+GGG 0.553733 4_1:-51237992 Msa0553950:CDS
TAAGTGGTCAGGAATTGAGC+TGG 0.554704 4_1:-51236318 Msa0553950:CDS
GTTAAGTATAAAAGGACCGT+TGG 0.556787 4_1:+51237372 None:intergenic
TTTATCCATTAGATGTGCAC+GGG 0.557966 4_1:+51239844 None:intergenic
CATAAACAAGAAGGGGAAGA+CGG 0.558483 4_1:+51237479 None:intergenic
AGCTGGGGCCATGAATGCAT+TGG 0.558654 4_1:-51237416 Msa0553950:CDS
AAAGGTTTGATGGGAAGAAG+AGG 0.558986 4_1:-51235954 Msa0553950:CDS
CCAGCCGGTACAGACCAGAT+AGG 0.559093 4_1:-51235852 Msa0553950:CDS
GAAACAAAGATATCTATGCC+TGG 0.561274 4_1:+51238510 None:intergenic
CACTCCGGATAACCAACCTA+TGG 0.561400 4_1:-51239942 Msa0553950:CDS
AAGGTTTGATGGGAAGAAGA+GGG 0.561777 4_1:-51235953 Msa0553950:CDS
TCCACTTCCTCCACCAAACG+GGG 0.562983 4_1:-51239567 Msa0553950:CDS
CAATGAACTGTCCAGAGAAG+AGG 0.562988 4_1:+51236420 None:intergenic
GCGCGGTCTTCTTTGGCGCG+TGG 0.563034 4_1:+51237091 None:intergenic
GGTTATAGGATGCATAATAG+AGG 0.564782 4_1:-51236692 Msa0553950:CDS
TCAAGTTCTCTATTCACTGG+AGG 0.565971 4_1:-51239881 Msa0553950:CDS
CTTCAAGGCCCGGTATATGT+AGG 0.566050 4_1:-51237160 Msa0553950:CDS
TGCGAGATTGAGGTATCCAT+AGG 0.569033 4_1:+51239926 None:intergenic
ATATAACTCCAAAGCAATGA+GGG 0.569533 4_1:-51237329 Msa0553950:CDS
CAGGAATTGAGCTGGAAGAA+TGG 0.570277 4_1:-51236310 Msa0553950:CDS
TGCCCGACTCTATCCGTCGC+AGG 0.570541 4_1:-51238158 Msa0553950:CDS
AGATTGAGGTATCCATAGGT+TGG 0.571127 4_1:+51239930 None:intergenic
GGGCAGTTGATCAAGAAGCC+AGG 0.571863 4_1:+51238629 None:intergenic
TGCTATGTTTCTGATGATGG+AGG 0.573867 4_1:-51238396 Msa0553950:CDS
AATCATCATATCACTCCTCT+GGG 0.574992 4_1:-51235889 Msa0553950:CDS
CTAGAAACATAAACAAGAAG+GGG 0.575023 4_1:+51237472 None:intergenic
AAAGAATGAGCTATCATCAT+GGG 0.575912 4_1:+51235814 None:intergenic
GTTTACTCAAAGTCGTTGCA+GGG 0.576895 4_1:-51236223 Msa0553950:CDS
ACAACACAAGAGCAACCAAA+CGG 0.577597 4_1:+51238739 None:intergenic
ATAGGATGCATAATAGAGGA+TGG 0.578268 4_1:-51236688 Msa0553950:CDS
AATGTTACGGTTGGATGTAA+GGG 0.578477 4_1:+51240070 None:intergenic
CTGAATTGATGAGCCGACCA+TGG 0.579321 4_1:-51239355 Msa0553950:CDS
CTGATGGATCTCATTGGCCA+GGG 0.579469 4_1:-51238026 Msa0553950:CDS
AGCAGCTAAAATCGACAAGA+TGG 0.579662 4_1:+51238443 None:intergenic
TGTCTTGCAAAGGTGACAGT+TGG 0.580465 4_1:-51241386 Msa0553950:five_prime_UTR
ATCACCTTAGAATCACAGCC+AGG 0.581701 4_1:+51239758 None:intergenic
GGTCGGCTCATCAATTCAGT+TGG 0.582914 4_1:+51239359 None:intergenic
AAGAAATTTCATTCTTCGGG+TGG 0.585093 4_1:+51236526 None:intergenic
AATGAACTGTCCAGAGAAGA+GGG 0.585838 4_1:+51236421 None:intergenic
ATTCCAGTGGCACAGTTCCA+AGG 0.587403 4_1:-51236908 Msa0553950:CDS
TTGTGTTAATGATTTATGAA+AGG 0.587792 4_1:+51241196 None:intergenic
GTGTTTGCTGTGACAAGTGG+TGG 0.588452 4_1:+51238465 None:intergenic
ATAAGAGGTTCATCACTTGG+AGG 0.588519 4_1:+51237550 None:intergenic
CGGTCTTCTTTGGCGCGTGG+AGG 0.588737 4_1:+51237094 None:intergenic
GCCTCGGCTGTCATGTCCAA+CGG 0.589027 4_1:-51237388 Msa0553950:CDS
CATAGGTTGGTTATCCGGAG+TGG 0.589102 4_1:+51239943 None:intergenic
ATAGGTTGGTTATCCGGAGT+GGG 0.590129 4_1:+51239944 None:intergenic
ACGGATGCAGTCTGGTTATG+GGG 0.591620 4_1:-51238687 Msa0553950:CDS
GGAGTAACTGATGTATCGAC+CGG 0.593019 4_1:+51240030 None:intergenic
AATGCAATATGGCCAAAGGA+AGG 0.593345 4_1:-51239419 Msa0553950:CDS
CCTTGATGGACTTCAAGGCC+CGG 0.594469 4_1:-51237170 Msa0553950:CDS
ATGCAATATGGCCAAAGGAA+GGG 0.595431 4_1:-51239418 Msa0553950:CDS
TATATAACTCCAAAGCAATG+AGG 0.595884 4_1:-51237330 Msa0553950:CDS
GAGAACAGGGCACTAAGGAT+GGG 0.596261 4_1:-51237010 Msa0553950:CDS
GCACCATACCACAGTGGAGC+CGG 0.596743 4_1:-51236034 Msa0553950:CDS
CTCAATCTCGCAGAAAGTTG+AGG 0.597849 4_1:-51239915 Msa0553950:CDS
ACCTTGACTTCAAAATCTGG+TGG 0.599130 4_1:-51236185 Msa0553950:CDS
GATGGGAGCAGTTCCACGGA+AGG 0.599466 4_1:+51236634 None:intergenic
TGATTTCGGCTTCATATCTG+AGG 0.599698 4_1:+51240153 None:intergenic
GGATGGCTGATGGATCTCAT+TGG 0.599838 4_1:-51238032 Msa0553950:CDS
ACCGCCTATCTGGTCTGTAC+CGG 0.600209 4_1:+51235848 None:intergenic
AACTCCAAAGCAATGAGGGA+AGG 0.600336 4_1:-51237325 Msa0553950:CDS
TGAAGTAAATCATCCACAGA+TGG 0.601911 4_1:-51239810 Msa0553950:CDS
CCATCAGTGTGATTTCATGT+TGG 0.602601 4_1:-51236787 Msa0553950:CDS
GACCATGGAGGCCACTAACA+AGG 0.603471 4_1:-51239340 Msa0553950:CDS
CCAACATGAAATCACACTGA+TGG 0.603494 4_1:+51236787 None:intergenic
CAGTGGCACAGTTCCAAGGT+AGG 0.604559 4_1:-51236904 Msa0553950:CDS
TATGGGCTGAGAACAGCAGC+AGG 0.606682 4_1:+51239305 None:intergenic
GTTTGATGGGAAGAAGAGGG+AGG 0.608204 4_1:-51235950 Msa0553950:CDS
AGTGGGGACAGCGTGTTGGA+TGG 0.609266 4_1:-51236748 Msa0553950:CDS
GTGATTAGCATATCTATCAG+AGG 0.610027 4_1:+51237225 None:intergenic
CACTTCCTCCACCAAACGGG+GGG 0.610575 4_1:-51239565 Msa0553950:CDS
CATGTTAACATCAAAGAAGA+CGG 0.610600 4_1:+51237198 None:intergenic
ACTGAGTGGGGACAGCGTGT+TGG 0.616731 4_1:-51236752 Msa0553950:CDS
GATTGATGGGAGCAGTTCCA+CGG 0.617764 4_1:+51236630 None:intergenic
TGGTTCTTTCTCAGGATCAG+CGG 0.617782 4_1:+51238485 None:intergenic
GTATGAGGACAAGACTGAGT+GGG 0.618939 4_1:-51236765 Msa0553950:CDS
AAACCTTCTAAACAGACAGC+CGG 0.619310 4_1:+51237135 None:intergenic
TTTGAGTAAACCTTGAAGCA+CGG 0.620499 4_1:+51236235 None:intergenic
GTGGCTATCAATCCACCAGC+CGG 0.620559 4_1:-51235867 Msa0553950:CDS
GAATTGAGCTGGAAGAATGG+TGG 0.621397 4_1:-51236307 Msa0553950:CDS
CGGGCCTTGAAGTCCATCAA+GGG 0.628245 4_1:+51237171 None:intergenic
TGGCAATGCAATATGGCCAA+AGG 0.629077 4_1:-51239423 Msa0553950:CDS
GTTACGGTTGGATGTAAGGG+AGG 0.629747 4_1:+51240073 None:intergenic
CCTTATTGACTCAATTCCAG+TGG 0.630704 4_1:-51236921 Msa0553950:CDS
GCAAACATGATATAGAGCCT+AGG 0.632131 4_1:-51238305 Msa0553950:CDS
TGATTAGCATATCTATCAGA+GGG 0.632288 4_1:+51237226 None:intergenic
GTACCTGAATTATGCCAGCA+TGG 0.632566 4_1:+51237965 None:intergenic
CCACTTCCTCCACCAAACGG+GGG 0.633334 4_1:-51239566 Msa0553950:CDS
AGTGCACTTACCACCCACTC+CGG 0.636922 4_1:-51239957 Msa0553950:CDS
GAAAAGCATCTGACCTGCGA+CGG 0.637406 4_1:+51238145 None:intergenic
ACTTCACCTGAGCACTCAAG+GGG 0.638545 4_1:-51237991 Msa0553950:CDS
ACCGCCAATTGTAATCATGA+TGG 0.640166 4_1:-51236102 Msa0553950:CDS
TGACCTGCGACGGATAGAGT+CGG 0.641736 4_1:+51238155 None:intergenic
CAACACCTCAGAAGAGAACA+GGG 0.642386 4_1:-51237023 Msa0553950:CDS
GGCAGATCAGACTTTCCTGT+AGG 0.644429 4_1:+51238531 None:intergenic
GAGGGAATTGAACATAGCAG+AGG 0.647687 4_1:+51237269 None:intergenic
GAGACTTTGATCACAATCGA+TGG 0.649293 4_1:-51239475 Msa0553950:CDS
GGTTGGTTATCCGGAGTGGG+TGG 0.659629 4_1:+51239947 None:intergenic
AACTTGATAGGAATAGCTGT+CGG 0.663058 4_1:-51236077 Msa0553950:CDS
GAAGTGGCTGTGAATAATGG+AGG 0.663961 4_1:-51239596 Msa0553950:CDS
ACAGCAGGATGATCAGCAAG+TGG 0.664216 4_1:+51236881 None:intergenic
GATCTGTAGAACGATTTACT+GGG 0.665434 4_1:+51238598 None:intergenic
AGCCGGTTCCTACATATACC+GGG 0.665641 4_1:+51237152 None:intergenic
GATGCATCAAGCAGCTCACG+AGG 0.667606 4_1:+51236824 None:intergenic
ATGGTGTTTGCTGTGACAAG+TGG 0.672708 4_1:+51238462 None:intergenic
CAGTGGAGCCGGTTACTAGG+AGG 0.676084 4_1:-51236023 Msa0553950:CDS
ACCGTTGGACATGACAGCCG+AGG 0.677629 4_1:+51237387 None:intergenic
CATCATATCACTCCTCTGGG+TGG 0.679038 4_1:-51235886 Msa0553950:CDS
GATTTATGGATCAGTTACTG+AGG 0.680451 4_1:-51236726 Msa0553950:CDS
ATCTTATAATCACACTCACA+GGG 0.682477 4_1:+51239707 None:intergenic
GATGGTTGTTTGAAACAAAG+GGG 0.686620 4_1:-51239457 Msa0553950:CDS
GGGAAGACGGATATCAACAT+CGG 0.693709 4_1:+51237492 None:intergenic
GCCGGTACAGACCAGATAGG+CGG 0.695938 4_1:-51235849 Msa0553950:CDS
ATGTGCTTTATGATGGATCG+TGG 0.700304 4_1:-51237301 Msa0553950:CDS
AAACATCAGAGACAAAATAG+GGG 0.704908 4_1:-51238096 Msa0553950:CDS
TATGAGGACAAGACTGAGTG+GGG 0.705596 4_1:-51236764 Msa0553950:CDS
GCTGCTTGATGCATCAACTG+TGG 0.710663 4_1:-51236816 Msa0553950:CDS
AACAACTACAGAAAGATGCG+CGG 0.723770 4_1:+51237074 None:intergenic
CCTAGTAACCGGCTCCACTG+TGG 0.726079 4_1:+51236026 None:intergenic
GGTATGAGGACAAGACTGAG+TGG 0.734815 4_1:-51236766 Msa0553950:CDS
AATTGATGAGCCGACCATGG+AGG 0.735033 4_1:-51239352 Msa0553950:CDS
AAGTGGCTGTGAATAATGGA+GGG 0.736494 4_1:-51239595 Msa0553950:CDS
TGCTTTATGATGGATCGTGG+TGG 0.736727 4_1:-51237298 Msa0553950:CDS
GTGGATTGATAGCCACCCAG+AGG 0.737395 4_1:+51235874 None:intergenic
GGTATGGTGAGAGCACCAGG+AGG 0.804665 4_1:+51236845 None:intergenic
TATACAGCACCATACCACAG+TGG 0.805259 4_1:-51236040 Msa0553950:CDS
AAGGTGATGAGTGATGAACG+TGG 0.906383 4_1:-51239743 Msa0553950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTCTTATTTTGAATAA+TGG - chr4_1:51236544-51236563 Msa0553950:CDS 10.0%
!! AAAAAAATGAAACATAAAAT+TGG + chr4_1:51237799-51237818 None:intergenic 10.0%
!!! TTTTTTTATAATTTCATAGA+TGG + chr4_1:51239092-51239111 None:intergenic 10.0%
!!! AAAAAAGTTGATTTTTTTTG+TGG - chr4_1:51236030-51236049 Msa0553950:CDS 15.0%
!!! AAAAAGTTGATTTTTTTTGT+GGG - chr4_1:51236031-51236050 Msa0553950:CDS 15.0%
!! AAAAAATAATTAAACTCCAA+AGG + chr4_1:51241235-51241254 None:intergenic 15.0%
!! TTGTGTTAATGATTTATGAA+AGG + chr4_1:51235809-51235828 None:intergenic 20.0%
!! TAAAGCATGATTAAGAAAAA+GGG + chr4_1:51235876-51235895 None:intergenic 20.0%
!! ATAAAGCATGATTAAGAAAA+AGG + chr4_1:51235877-51235896 None:intergenic 20.0%
!!! TTAATCATGCTTTATTTTAG+TGG - chr4_1:51235882-51235901 Msa0553950:CDS 20.0%
!!! TAATCATGCTTTATTTTAGT+GGG - chr4_1:51235883-51235902 Msa0553950:CDS 20.0%
!!! AAAAGTTGATTTTTTTTGTG+GGG - chr4_1:51236032-51236051 Msa0553950:CDS 20.0%
!! AGAAAAAACAATGAAACTAT+AGG + chr4_1:51236391-51236410 None:intergenic 20.0%
!!! AATTGTAAACTTCTGAAATT+CGG + chr4_1:51236579-51236598 None:intergenic 20.0%
!! TAAGAGAGAGAAATATTTAA+AGG + chr4_1:51236646-51236665 None:intergenic 20.0%
!!! CTCTTATTATAATACTTTTG+AGG - chr4_1:51236660-51236679 Msa0553950:CDS 20.0%
!!! AAAAAGCATCTAATAAAAAG+AGG + chr4_1:51237734-51237753 None:intergenic 20.0%
!! ATAATAGATTGCATTCAAAT+TGG + chr4_1:51237891-51237910 None:intergenic 20.0%
!! TATTGAAAGTAATAGAAGAA+TGG - chr4_1:51237993-51238012 Msa0553950:CDS 20.0%
!! TAAAACAAGCTGATAAAATA+TGG + chr4_1:51238136-51238155 None:intergenic 20.0%
!! ATATAAAAACTTTGATGTCA+CGG - chr4_1:51239340-51239359 Msa0553950:CDS 20.0%
!!! AGATTATTACAATTTTCCTT+TGG - chr4_1:51241216-51241235 Msa0553950:five_prime_UTR 20.0%
!! AGCAAGTAAATAATATTTCT+TGG + chr4_1:51241380-51241399 None:intergenic 20.0%
!!! TAACTCAAGTTTTATAGTTT+AGG - chr4_1:51241399-51241418 Msa0553950:five_prime_UTR 20.0%
!!! AAAGAGTGTTATATAAGAAG+TGG + chr4_1:51235672-51235691 None:intergenic 25.0%
! AATTAAGCTGAAAAATGAGT+TGG + chr4_1:51235845-51235864 None:intergenic 25.0%
!!! AATCATGCTTTATTTTAGTG+GGG - chr4_1:51235884-51235903 Msa0553950:CDS 25.0%
!!! TTTTCATTCTGATTTAGCTT+AGG - chr4_1:51235924-51235943 Msa0553950:CDS 25.0%
! AATATAACCAGTTAGTGATT+TGG + chr4_1:51236530-51236549 None:intergenic 25.0%
!!! TTAGATTCACTTTTGAACTT+TGG - chr4_1:51236698-51236717 Msa0553950:CDS 25.0%
!! GTGTTAAATTTTTGAATTGC+AGG - chr4_1:51236801-51236820 Msa0553950:CDS 25.0%
! GAATTGCAGGATATTAATTT+AGG - chr4_1:51236814-51236833 Msa0553950:CDS 25.0%
! CTACTCATTTGTAATGATTT+CGG + chr4_1:51236866-51236885 None:intergenic 25.0%
! TATATAGATGCAGTGAAAAT+AGG - chr4_1:51237331-51237350 Msa0553950:CDS 25.0%
! AAATGGTCATTCAGAATAAA+GGG + chr4_1:51237850-51237869 None:intergenic 25.0%
! AAAATGGTCATTCAGAATAA+AGG + chr4_1:51237851-51237870 None:intergenic 25.0%
!! TTTATTCTGAATGACCATTT+TGG - chr4_1:51237850-51237869 Msa0553950:intron 25.0%
! CTGAAACTTCAAAAAAATGA+TGG - chr4_1:51237913-51237932 Msa0553950:intron 25.0%
! AGTAATAGAAGAATGGAAAT+TGG - chr4_1:51238000-51238019 Msa0553950:CDS 25.0%
!!! ATGTACTGCTTTTAATTCTA+AGG - chr4_1:51238155-51238174 Msa0553950:CDS 25.0%
! TAAAAATGATGAGACTGTAA+CGG + chr4_1:51238242-51238261 None:intergenic 25.0%
!! TGTCTATAGTTTGTGAATTA+TGG - chr4_1:51238340-51238359 Msa0553950:CDS 25.0%
!! TCTGGAACAAAAGAATATAT+CGG + chr4_1:51239241-51239260 None:intergenic 25.0%
!! ACTTTCTAAAAAAGCTAAGT+AGG - chr4_1:51239381-51239400 Msa0553950:CDS 25.0%
! ATTCATCAGTTATTCATTCT+AGG + chr4_1:51239408-51239427 None:intergenic 25.0%
! TCTAGAAACATAAACAAGAA+GGG + chr4_1:51239534-51239553 None:intergenic 25.0%
! CAATCAAGGTTAAGTATAAA+AGG + chr4_1:51239641-51239660 None:intergenic 25.0%
! ATATATAGTGATCACAATCA+AGG + chr4_1:51239655-51239674 None:intergenic 25.0%
!! CTCTAAAAACAATGCAATTA+TGG - chr4_1:51240453-51240472 Msa0553950:intron 25.0%
! TCTGAAGAAATTTCATTCTT+CGG + chr4_1:51240483-51240502 None:intergenic 25.0%
! ATGGATAAATTCCAACATTA+AGG + chr4_1:51240516-51240535 None:intergenic 25.0%
! ATAAGAAAAAACGAAGTGAA+TGG + chr4_1:51240535-51240554 None:intergenic 25.0%
!!! TATTCCAGAAAGTTGTTTTT+AGG - chr4_1:51241324-51241343 Msa0553950:five_prime_UTR 25.0%
! TAGGAATGAAAAATGTTTGA+TGG - chr4_1:51241343-51241362 Msa0553950:five_prime_UTR 25.0%
TTGAGATCTATGTGTGAAAT+GGG + chr4_1:51235771-51235790 None:intergenic 30.0%
! TTTGAGATCTATGTGTGAAA+TGG + chr4_1:51235772-51235791 None:intergenic 30.0%
! GTATGAACTTTTTGTGATAG+TGG - chr4_1:51235946-51235965 Msa0553950:CDS 30.0%
!!! TTTTTTCTCACCGTGATTAT+CGG + chr4_1:51236014-51236033 None:intergenic 30.0%
! TCTTCATTCTGTTTTCTTCT+TGG - chr4_1:51236136-51236155 Msa0553950:CDS 30.0%
CAACTAGAAAAACTCAAAGT+AGG + chr4_1:51236215-51236234 None:intergenic 30.0%
! AGAATCGAAATAAGCTGTTT+TGG - chr4_1:51236263-51236282 Msa0553950:CDS 30.0%
! AATCTGTGTTGTTCAAATTG+AGG - chr4_1:51236316-51236335 Msa0553950:CDS 30.0%
CAAAAAAAATTGCATCAGCT+TGG + chr4_1:51236426-51236445 None:intergenic 30.0%
TCTGTGTTAAAAAGATGTTG+AGG - chr4_1:51236499-51236518 Msa0553950:CDS 30.0%
! TGATGTGTGTTTGTATGTTT+TGG - chr4_1:51236613-51236632 Msa0553950:CDS 30.0%
ATCTTATAATCACACTCACA+GGG + chr4_1:51237298-51237317 None:intergenic 30.0%
TATCTTATAATCACACTCAC+AGG + chr4_1:51237299-51237318 None:intergenic 30.0%
TCAAGTTCTGTGTTCTTATA+AGG + chr4_1:51237385-51237404 None:intergenic 30.0%
AATGGTCATTCAGAATAAAG+GGG + chr4_1:51237849-51237868 None:intergenic 30.0%
ATAGAAGAATGGAAATTGGA+TGG - chr4_1:51238004-51238023 Msa0553950:CDS 30.0%
! GAAATTGGATGGAAGTTTTA+GGG - chr4_1:51238015-51238034 Msa0553950:CDS 30.0%
!! TCTCATCATTTTTATCCGTT+TGG - chr4_1:51238248-51238267 Msa0553950:CDS 30.0%
TACAGATCTTAATGTTCTGA+AGG - chr4_1:51238419-51238438 Msa0553950:CDS 30.0%
!!! ACTTTTAACTTTTGAGGCAA+TGG - chr4_1:51238632-51238651 Msa0553950:CDS 30.0%
TTTAAGCTGAAGTATGATTC+AGG + chr4_1:51238726-51238745 None:intergenic 30.0%
!!! GGTTTCACTTTGTTTTTGTA+AGG + chr4_1:51238756-51238775 None:intergenic 30.0%
! ATTTTGTCTCTGATGTTTCA+TGG + chr4_1:51238904-51238923 None:intergenic 30.0%
TGAAACATCAGAGACAAAAT+AGG - chr4_1:51238904-51238923 Msa0553950:intron 30.0%
GAAACATCAGAGACAAAATA+GGG - chr4_1:51238905-51238924 Msa0553950:intron 30.0%
AAACATCAGAGACAAAATAG+GGG - chr4_1:51238906-51238925 Msa0553950:intron 30.0%
!!! GTTGCTTTTTGAACCTTTAT+AGG + chr4_1:51238948-51238967 None:intergenic 30.0%
TAAAGGTTCAAAAAGCAACA+TGG - chr4_1:51238949-51238968 Msa0553950:intron 30.0%
TATAATTTCATAGATGGCAG+CGG + chr4_1:51239086-51239105 None:intergenic 30.0%
CATACATAGATGTGAGAAAA+TGG + chr4_1:51239170-51239189 None:intergenic 30.0%
ATTAAACCAGATAACAAGTC+TGG + chr4_1:51239259-51239278 None:intergenic 30.0%
TCCATTGAATCTGTTAAATG+CGG - chr4_1:51239278-51239297 Msa0553950:intron 30.0%
! ACTGATGAATGATATTTTGC+AGG - chr4_1:51239418-51239437 Msa0553950:CDS 30.0%
CTAGAAACATAAACAAGAAG+GGG + chr4_1:51239533-51239552 None:intergenic 30.0%
! CTCTAGAAACATAAACAAGA+AGG + chr4_1:51239535-51239554 None:intergenic 30.0%
TATATAACTCCAAAGCAATG+AGG - chr4_1:51239672-51239691 Msa0553950:CDS 30.0%
ATATAACTCCAAAGCAATGA+GGG - chr4_1:51239673-51239692 Msa0553950:CDS 30.0%
TGATTAGCATATCTATCAGA+GGG + chr4_1:51239779-51239798 None:intergenic 30.0%
CATGTTAACATCAAAGAAGA+CGG + chr4_1:51239807-51239826 None:intergenic 30.0%
! TTTAGAAGGTTTGCTCTTTA+TGG - chr4_1:51239878-51239897 Msa0553950:CDS 30.0%
TCACAATTCTCGAAGAAATT+TGG - chr4_1:51240046-51240065 Msa0553950:CDS 30.0%
CACAATTCTCGAAGAAATTT+GGG - chr4_1:51240047-51240066 Msa0553950:CDS 30.0%
CTGAAGAAATTTCATTCTTC+GGG + chr4_1:51240482-51240501 None:intergenic 30.0%
GAAGAATGAAATTTCTTCAG+AGG - chr4_1:51240482-51240501 Msa0553950:intron 30.0%
CTGATCTGTATATTGTCAAA+TGG - chr4_1:51240863-51240882 Msa0553950:intron 30.0%
TTCACCATCATGATTACAAT+TGG + chr4_1:51240907-51240926 None:intergenic 30.0%
AAAGAATGAGCTATCATCAT+GGG + chr4_1:51241191-51241210 None:intergenic 30.0%
AAAAGAATGAGCTATCATCA+TGG + chr4_1:51241192-51241211 None:intergenic 30.0%
CATTCCTAAAAACAACTTTC+TGG + chr4_1:51241331-51241350 None:intergenic 30.0%
ATATAAGAAGTGGTCTGGTT+TGG + chr4_1:51235662-51235681 None:intergenic 35.0%
GTGTTATATAAGAAGTGGTC+TGG + chr4_1:51235667-51235686 None:intergenic 35.0%
TACTTGCTTGCATACATGAT+TGG - chr4_1:51235973-51235992 Msa0553950:CDS 35.0%
TGAATAGTTGCCGATAATCA+CGG - chr4_1:51236001-51236020 Msa0553950:CDS 35.0%
AGCAATGTAGTGAAGTCAAA+AGG - chr4_1:51236068-51236087 Msa0553950:CDS 35.0%
GCAATGTAGTGAAGTCAAAA+GGG - chr4_1:51236069-51236088 Msa0553950:CDS 35.0%
CAATGTAGTGAAGTCAAAAG+GGG - chr4_1:51236070-51236089 Msa0553950:CDS 35.0%
AATCCTTCATAGATGACTCT+TGG + chr4_1:51236168-51236187 None:intergenic 35.0%
TATGTAAGTGTTTGTTCCTG+AGG - chr4_1:51236738-51236757 Msa0553950:CDS 35.0%
AATGTTACGGTTGGATGTAA+GGG + chr4_1:51236935-51236954 None:intergenic 35.0%
AAATGTTACGGTTGGATGTA+AGG + chr4_1:51236936-51236955 None:intergenic 35.0%
TTACATCCAACCGTAACATT+TGG - chr4_1:51236935-51236954 Msa0553950:CDS 35.0%
!! GTTTCAAGTTCTCTATTCAC+TGG - chr4_1:51237118-51237137 Msa0553950:CDS 35.0%
TTTATCCATTAGATGTGCAC+GGG + chr4_1:51237161-51237180 None:intergenic 35.0%
CTTTATCCATTAGATGTGCA+CGG + chr4_1:51237162-51237181 None:intergenic 35.0%
TGAAGTAAATCATCCACAGA+TGG - chr4_1:51237192-51237211 Msa0553950:CDS 35.0%
ATGCAGTGAAAATAGGAGAT+GGG - chr4_1:51237338-51237357 Msa0553950:CDS 35.0%
!! AGACTTTGTCGATTTCATCA+AGG + chr4_1:51237485-51237504 None:intergenic 35.0%
! TCGATGGTTGTTTGAAACAA+AGG - chr4_1:51237543-51237562 Msa0553950:CDS 35.0%
! CGATGGTTGTTTGAAACAAA+GGG - chr4_1:51237544-51237563 Msa0553950:CDS 35.0%
! GATGGTTGTTTGAAACAAAG+GGG - chr4_1:51237545-51237564 Msa0553950:CDS 35.0%
! TTTGAAACAAAGGGGACATA+TGG - chr4_1:51237553-51237572 Msa0553950:CDS 35.0%
ATGGTTATGGCAATGCAATA+TGG - chr4_1:51237572-51237591 Msa0553950:intron 35.0%
GATTTCGGAAATGGAAAAGA+TGG - chr4_1:51237607-51237626 Msa0553950:intron 35.0%
ATCTTCAACTTCCTTGTTAG+TGG + chr4_1:51237676-51237695 None:intergenic 35.0%
CAAATACAGTGAAGCCAAAA+TGG + chr4_1:51237867-51237886 None:intergenic 35.0%
! GGAAATTGGATGGAAGTTTT+AGG - chr4_1:51238014-51238033 Msa0553950:CDS 35.0%
!! ATGATTTTGGAGAAGCAATC+TGG - chr4_1:51238047-51238066 Msa0553950:CDS 35.0%
TAATTGTCAGAACACACATG+TGG + chr4_1:51238210-51238229 None:intergenic 35.0%
GAGGGTCACACATAAAAATA+CGG - chr4_1:51238296-51238315 Msa0553950:CDS 35.0%
ATAAAAATACGGATGCAGTC+TGG - chr4_1:51238307-51238326 Msa0553950:CDS 35.0%
!! AATTATGGTTTGCTTTCTCC+TGG - chr4_1:51238355-51238374 Msa0553950:CDS 35.0%
GATCTGTAGAACGATTTACT+GGG + chr4_1:51238407-51238426 None:intergenic 35.0%
AGATCTGTAGAACGATTTAC+TGG + chr4_1:51238408-51238427 None:intergenic 35.0%
GAAACAAAGATATCTATGCC+TGG + chr4_1:51238495-51238514 None:intergenic 35.0%
! TCTTGCTATGTTTCTGATGA+TGG - chr4_1:51238603-51238622 Msa0553950:CDS 35.0%
!!! AGGTGCACTTTTAACTTTTG+AGG - chr4_1:51238626-51238645 Msa0553950:CDS 35.0%
!! TGCTAGCTTTGCTAATAACT+GGG - chr4_1:51238662-51238681 Msa0553950:CDS 35.0%
TAGGCTCTATATCATGTTTG+CGG + chr4_1:51238698-51238717 None:intergenic 35.0%
AAGTATGATTCAGGATTCCT+AGG + chr4_1:51238717-51238736 None:intergenic 35.0%
! AGTGAAACCTGATTTTGTGA+AGG - chr4_1:51238767-51238786 Msa0553950:intron 35.0%
! ATTTTGTGAAGGATCGTAGA+AGG - chr4_1:51238778-51238797 Msa0553950:intron 35.0%
CTCTTCACTTCACATAGAAT+TGG + chr4_1:51239194-51239213 None:intergenic 35.0%
!! TTTGTTCCAGACTTGTTATC+TGG - chr4_1:51239250-51239269 Msa0553950:intron 35.0%
TCATCAGCATTTCCAATAAG+AGG + chr4_1:51239470-51239489 None:intergenic 35.0%
GTTAAGTATAAAAGGACCGT+TGG + chr4_1:51239633-51239652 None:intergenic 35.0%
GTGATTAGCATATCTATCAG+AGG + chr4_1:51239780-51239799 None:intergenic 35.0%
! TCTTTCTGTAGTTGTTGCTT+TGG - chr4_1:51239935-51239954 Msa0553950:CDS 35.0%
!! CTTTCTGTAGTTGTTGCTTT+GGG - chr4_1:51239936-51239955 Msa0553950:CDS 35.0%
TGTGATTTCATGTTGGTATG+AGG - chr4_1:51240222-51240241 Msa0553950:intron 35.0%
GATTTATGGATCAGTTACTG+AGG - chr4_1:51240276-51240295 Msa0553950:intron 35.0%
GGTTATAGGATGCATAATAG+AGG - chr4_1:51240310-51240329 Msa0553950:intron 35.0%
ATAGGATGCATAATAGAGGA+TGG - chr4_1:51240314-51240333 Msa0553950:intron 35.0%
AACCTATCAGTGAGATTGAT+GGG + chr4_1:51240388-51240407 None:intergenic 35.0%
AAGAAATTTCATTCTTCGGG+TGG + chr4_1:51240479-51240498 None:intergenic 35.0%
AGGATAGCATACCTTAATGT+TGG - chr4_1:51240502-51240521 Msa0553950:intron 35.0%
AAAAAGTGACATCGAGTGTT+TGG + chr4_1:51240609-51240628 None:intergenic 35.0%
!!! AACACTCGATGTCACTTTTT+TGG - chr4_1:51240609-51240628 Msa0553950:intron 35.0%
!!! CACTTTTTTGGCTTACCTTT+TGG - chr4_1:51240621-51240640 Msa0553950:intron 35.0%
TTGCTGTGCTTGAAATTAAG+TGG - chr4_1:51240668-51240687 Msa0553950:intron 35.0%
!!! AATGAGCAGTTTTGGTTGAT+TGG - chr4_1:51240721-51240740 Msa0553950:intron 35.0%
TTTGAGTAAACCTTGAAGCA+CGG + chr4_1:51240770-51240789 None:intergenic 35.0%
TTCACCTTGACTTCAAAATC+TGG - chr4_1:51240814-51240833 Msa0553950:intron 35.0%
TACAATTGGCGGTATCATAA+GGG + chr4_1:51240893-51240912 None:intergenic 35.0%
TTACAATTGGCGGTATCATA+AGG + chr4_1:51240894-51240913 None:intergenic 35.0%
ACCATCATGATTACAATTGG+CGG + chr4_1:51240904-51240923 None:intergenic 35.0%
! ATCATGATGGTGAACTTGAT+AGG - chr4_1:51240913-51240932 Msa0553950:intron 35.0%
AACTTGATAGGAATAGCTGT+CGG - chr4_1:51240925-51240944 Msa0553950:intron 35.0%
! AGGTGTTTTCTTCAGTTTCT+GGG - chr4_1:51240999-51241018 Msa0553950:intron 35.0%
! CATCTCTATCCTTTTGCAAA+AGG - chr4_1:51241030-51241049 Msa0553950:intron 35.0%
! TCCTTTTGCAAAAGGTTTGA+TGG - chr4_1:51241038-51241057 Msa0553950:intron 35.0%
! CCTTTTGCAAAAGGTTTGAT+GGG - chr4_1:51241039-51241058 Msa0553950:intron 35.0%
GACCATACAAAAACAATGGT+GGG + chr4_1:51241081-51241100 None:intergenic 35.0%
!!! CACCATTGTTTTTGTATGGT+CGG - chr4_1:51241080-51241099 Msa0553950:intron 35.0%
!!! ACCATTGTTTTTGTATGGTC+GGG - chr4_1:51241081-51241100 Msa0553950:intron 35.0%
AATCATCATATCACTCCTCT+GGG - chr4_1:51241113-51241132 Msa0553950:intron 35.0%
GACAGAGAACGAGTAATCTT+CGG + chr4_1:51235584-51235603 None:intergenic 40.0%
TGACCAAGAGTCATCTATGA+AGG - chr4_1:51236162-51236181 Msa0553950:CDS 40.0%
GGAATCTCCAAATCACTAAC+TGG - chr4_1:51236520-51236539 Msa0553950:CDS 40.0%
TAAGTGTTTGTTCCTGAGGT+GGG - chr4_1:51236742-51236761 Msa0553950:CDS 40.0%
TGATTTCGGCTTCATATCTG+AGG + chr4_1:51236852-51236871 None:intergenic 40.0%
AGTTCTTCGGCCAAATGTTA+CGG + chr4_1:51236948-51236967 None:intergenic 40.0%
!! GTATCCATAGGTTGGTTATC+CGG + chr4_1:51237067-51237086 None:intergenic 40.0%
! AGATTGAGGTATCCATAGGT+TGG + chr4_1:51237075-51237094 None:intergenic 40.0%
TCAAGTTCTCTATTCACTGG+AGG - chr4_1:51237121-51237140 Msa0553950:CDS 40.0%
TATTACCCGTGCACATCTAA+TGG - chr4_1:51237153-51237172 Msa0553950:CDS 40.0%
TATTCCTGGCTGTGATTCTA+AGG - chr4_1:51237240-51237259 Msa0553950:CDS 40.0%
GATGCAGTGAAAATAGGAGA+TGG - chr4_1:51237337-51237356 Msa0553950:CDS 40.0%
TATAAGGCTCTTTGCATCCT+GGG + chr4_1:51237369-51237388 None:intergenic 40.0%
TTATAAGGCTCTTTGCATCC+TGG + chr4_1:51237370-51237389 None:intergenic 40.0%
GAACACAGAACTTGATGAAG+TGG - chr4_1:51237390-51237409 Msa0553950:CDS 40.0%
GATGAAGTGGCTGTGAATAA+TGG - chr4_1:51237403-51237422 Msa0553950:CDS 40.0%
! AAGTGGCTGTGAATAATGGA+GGG - chr4_1:51237407-51237426 Msa0553950:CDS 40.0%
GAGACTTTGATCACAATCGA+TGG - chr4_1:51237527-51237546 Msa0553950:CDS 40.0%
ACAAAGGGGACATATGGTTA+TGG - chr4_1:51237559-51237578 Msa0553950:CDS 40.0%
AATGCAATATGGCCAAAGGA+AGG - chr4_1:51237583-51237602 Msa0553950:intron 40.0%
ATGCAATATGGCCAAAGGAA+GGG - chr4_1:51237584-51237603 Msa0553950:intron 40.0%
! AGGGCTGATTGAGATGATTT+TGG - chr4_1:51238034-51238053 Msa0553950:CDS 40.0%
! TGAGACTGTAACGGAAAGAA+AGG + chr4_1:51238233-51238252 None:intergenic 40.0%
ACAACACAAGAGCAACCAAA+CGG + chr4_1:51238266-51238285 None:intergenic 40.0%
GACTTTCCTGTAGGATTGTT+AGG + chr4_1:51238465-51238484 None:intergenic 40.0%
AGCAGCTAAAATCGACAAGA+TGG + chr4_1:51238562-51238581 None:intergenic 40.0%
TAGCAAGAAAGCTTCTCAAC+TGG + chr4_1:51238591-51238610 None:intergenic 40.0%
!! TGCTATGTTTCTGATGATGG+AGG - chr4_1:51238606-51238625 Msa0553950:CDS 40.0%
!! CTGCTAGCTTTGCTAATAAC+TGG - chr4_1:51238661-51238680 Msa0553950:CDS 40.0%
ATATCATGTTTGCGGCAGAA+TGG + chr4_1:51238690-51238709 None:intergenic 40.0%
GCAAACATGATATAGAGCCT+AGG - chr4_1:51238697-51238716 Msa0553950:CDS 40.0%
CTACGATCCTTCACAAAATC+AGG + chr4_1:51238777-51238796 None:intergenic 40.0%
GAGTTCAAGGTCAGAATCAA+TGG - chr4_1:51238819-51238838 Msa0553950:intron 40.0%
TGAACCTGTTGAGCCTATAA+AGG - chr4_1:51238932-51238951 Msa0553950:intron 40.0%
TGAACCTTTATAGGCTCAAC+AGG + chr4_1:51238939-51238958 None:intergenic 40.0%
GGTTCAAAAAGCAACATGGA+TGG - chr4_1:51238953-51238972 Msa0553950:intron 40.0%
GCCGCATTTAACAGATTCAA+TGG + chr4_1:51239282-51239301 None:intergenic 40.0%
AAAGTCTGCAACCACAATCT+GGG + chr4_1:51239366-51239385 None:intergenic 40.0%
ATAAGAGGTTCATCACTTGG+AGG + chr4_1:51239455-51239474 None:intergenic 40.0%
CCAATAAGAGGTTCATCACT+TGG + chr4_1:51239458-51239477 None:intergenic 40.0%
CCAAGTGATGAACCTCTTAT+TGG - chr4_1:51239455-51239474 Msa0553950:CDS 40.0%
CATAAACAAGAAGGGGAAGA+CGG + chr4_1:51239526-51239545 None:intergenic 40.0%
!! TTTTTGTTGTGGTCGTAACC+TGG + chr4_1:51239566-51239585 None:intergenic 40.0%
TACGACCACAACAAAAAAGC+TGG - chr4_1:51239569-51239588 Msa0553950:CDS 40.0%
ACGACCACAACAAAAAAGCT+GGG - chr4_1:51239570-51239589 Msa0553950:CDS 40.0%
! GGAAGGTATGTGCTTTATGA+TGG - chr4_1:51239694-51239713 Msa0553950:CDS 40.0%
!! ATGTGCTTTATGATGGATCG+TGG - chr4_1:51239701-51239720 Msa0553950:CDS 40.0%
GCTATGTTCAATTCCCTCAA+AGG - chr4_1:51239738-51239757 Msa0553950:CDS 40.0%
TCAATTCCCTCAAAGGTTTG+AGG - chr4_1:51239745-51239764 Msa0553950:CDS 40.0%
CAATTCCCTCAAAGGTTTGA+GGG - chr4_1:51239746-51239765 Msa0553950:CDS 40.0%
CAATACCCTCAAACCTTTGA+GGG + chr4_1:51239754-51239773 None:intergenic 40.0%
TCAATACCCTCAAACCTTTG+AGG + chr4_1:51239755-51239774 None:intergenic 40.0%
AAACCTTCTAAACAGACAGC+CGG + chr4_1:51239870-51239889 None:intergenic 40.0%
AACAACTACAGAAAGATGCG+CGG + chr4_1:51239931-51239950 None:intergenic 40.0%
CCACTGGAATTGAGTCAATA+AGG + chr4_1:51240084-51240103 None:intergenic 40.0%
!! CCTTATTGACTCAATTCCAG+TGG - chr4_1:51240081-51240100 Msa0553950:CDS 40.0%
GATCATCCTGCTGTGAAAAA+TGG - chr4_1:51240130-51240149 Msa0553950:CDS 40.0%
CCAACATGAAATCACACTGA+TGG + chr4_1:51240218-51240237 None:intergenic 40.0%
CCATCAGTGTGATTTCATGT+TGG - chr4_1:51240215-51240234 Msa0553950:intron 40.0%
CAACCTATCAGTGAGATTGA+TGG + chr4_1:51240389-51240408 None:intergenic 40.0%
GTTGCATCAGGTTCTTAGAT+GGG - chr4_1:51240405-51240424 Msa0553950:intron 40.0%
AATGAACTGTCCAGAGAAGA+GGG + chr4_1:51240584-51240603 None:intergenic 40.0%
GTGTCACAGTAATAGCCAAA+AGG + chr4_1:51240639-51240658 None:intergenic 40.0%
GTGCTTGAAATTAAGTGGTC+AGG - chr4_1:51240673-51240692 Msa0553950:intron 40.0%
!!! AGCAGTTTTGGTTGATTGGA+GGG - chr4_1:51240725-51240744 Msa0553950:intron 40.0%
GTTTACTCAAAGTCGTTGCA+GGG - chr4_1:51240779-51240798 Msa0553950:intron 40.0%
ACCTTGACTTCAAAATCTGG+TGG - chr4_1:51240817-51240836 Msa0553950:intron 40.0%
!!! ACCACCAGATTTTGAAGTCA+AGG + chr4_1:51240821-51240840 None:intergenic 40.0%
ACCGCCAATTGTAATCATGA+TGG - chr4_1:51240900-51240919 Msa0553950:intron 40.0%
AGAAAACACCTCCTAGTAAC+CGG + chr4_1:51240990-51241009 None:intergenic 40.0%
!! GAGGTGTTTTCTTCAGTTTC+TGG - chr4_1:51240998-51241017 Msa0553950:intron 40.0%
! TTTCTTCAGTTTCTGGGTCT+TGG - chr4_1:51241005-51241024 Msa0553950:intron 40.0%
! CCCATCAAACCTTTTGCAAA+AGG + chr4_1:51241042-51241061 None:intergenic 40.0%
AAAGGTTTGATGGGAAGAAG+AGG - chr4_1:51241048-51241067 Msa0553950:intron 40.0%
AAGGTTTGATGGGAAGAAGA+GGG - chr4_1:51241049-51241068 Msa0553950:intron 40.0%
!!! CACCCACCATTGTTTTTGTA+TGG - chr4_1:51241076-51241095 Msa0553950:intron 40.0%
CGACCATACAAAAACAATGG+TGG + chr4_1:51241082-51241101 None:intergenic 40.0%
ACCCGACCATACAAAAACAA+TGG + chr4_1:51241085-51241104 None:intergenic 40.0%
CAATCATCATATCACTCCTC+TGG - chr4_1:51241112-51241131 Msa0553950:intron 40.0%
CACTGAGTTGTTGAGTCAAA+AGG + chr4_1:51241259-51241278 None:intergenic 40.0%
TCTTTCAGCGTGTCTTGCAA+AGG - chr4_1:51235606-51235625 Msa0553950:three_prime_UTR 45.0%
TGTCTTGCAAAGGTGACAGT+TGG - chr4_1:51235616-51235635 Msa0553950:three_prime_UTR 45.0%
GTAAGTGTTTGTTCCTGAGG+TGG - chr4_1:51236741-51236760 Msa0553950:CDS 45.0%
AAGTGTTTGTTCCTGAGGTG+GGG - chr4_1:51236743-51236762 Msa0553950:CDS 45.0%
TTAACTTTATGCCCCACCTC+AGG + chr4_1:51236757-51236776 None:intergenic 45.0%
TTTGGCCGAAGAACTTCATC+CGG - chr4_1:51236953-51236972 Msa0553950:CDS 45.0%
ATCGACCGGATGAAGTTCTT+CGG + chr4_1:51236961-51236980 None:intergenic 45.0%
! GGAGTAACTGATGTATCGAC+CGG + chr4_1:51236975-51236994 None:intergenic 45.0%
CTCGCTATCAAGATCATCTC+TGG + chr4_1:51236996-51237015 None:intergenic 45.0%
!! GATGATCTTGATAGCGAGCT+AGG - chr4_1:51236998-51237017 Msa0553950:CDS 45.0%
!! ATAGGTTGGTTATCCGGAGT+GGG + chr4_1:51237061-51237080 None:intergenic 45.0%
! TGCGAGATTGAGGTATCCAT+AGG + chr4_1:51237079-51237098 None:intergenic 45.0%
CTCAACTTTCTGCGAGATTG+AGG + chr4_1:51237089-51237108 None:intergenic 45.0%
CTCAATCTCGCAGAAAGTTG+AGG - chr4_1:51237087-51237106 Msa0553950:CDS 45.0%
GTAAATCATCCACAGATGGC+TGG - chr4_1:51237196-51237215 Msa0553950:CDS 45.0%
ATCACCTTAGAATCACAGCC+AGG + chr4_1:51237247-51237266 None:intergenic 45.0%
AAGGTGATGAGTGATGAACG+TGG - chr4_1:51237259-51237278 Msa0553950:CDS 45.0%
GAAGTGGCTGTGAATAATGG+AGG - chr4_1:51237406-51237425 Msa0553950:CDS 45.0%
TGGCAATGCAATATGGCCAA+AGG - chr4_1:51237579-51237598 Msa0553950:intron 45.0%
TGCAATATGGCCAAAGGAAG+GGG - chr4_1:51237585-51237604 Msa0553950:intron 45.0%
TTTCCGAAATCCCCTTCCTT+TGG + chr4_1:51237598-51237617 None:intergenic 45.0%
AAGGAAGGGGATTTCGGAAA+TGG - chr4_1:51237598-51237617 Msa0553950:intron 45.0%
! AAGAGGCTTCGTACCGATAT+GGG + chr4_1:51237717-51237736 None:intergenic 45.0%
! AAAGAGGCTTCGTACCGATA+TGG + chr4_1:51237718-51237737 None:intergenic 45.0%
ATACGGATGCAGTCTGGTTA+TGG - chr4_1:51238313-51238332 Msa0553950:CDS 45.0%
TACGGATGCAGTCTGGTTAT+GGG - chr4_1:51238314-51238333 Msa0553950:CDS 45.0%
CGATTTACTGGGCATAGCTT+GGG + chr4_1:51238396-51238415 None:intergenic 45.0%
ACGATTTACTGGGCATAGCT+TGG + chr4_1:51238397-51238416 None:intergenic 45.0%
CCTGTAGGATTGTTAGGACT+TGG + chr4_1:51238459-51238478 None:intergenic 45.0%
CCAAGTCCTAACAATCCTAC+AGG - chr4_1:51238456-51238475 Msa0553950:CDS 45.0%
TGGTTCTTTCTCAGGATCAG+CGG + chr4_1:51238520-51238539 None:intergenic 45.0%
ACAAGTGGTGGTTCTTTCTC+AGG + chr4_1:51238528-51238547 None:intergenic 45.0%
!! ATGGTGTTTGCTGTGACAAG+TGG + chr4_1:51238543-51238562 None:intergenic 45.0%
!!! AACTTTTGAGGCAATGGCTG+AGG - chr4_1:51238638-51238657 Msa0553950:CDS 45.0%
GCGTGAGTATGATGAGTTCA+AGG - chr4_1:51238806-51238825 Msa0553950:intron 45.0%
! AGATGCTTTTCACGCAAGAG+AGG - chr4_1:51238869-51238888 Msa0553950:intron 45.0%
TCACGCAAGAGAGGAAATCA+AGG - chr4_1:51238878-51238897 Msa0553950:intron 45.0%
AAAGCAACATGGATGGCTGA+TGG - chr4_1:51238960-51238979 Msa0553950:intron 45.0%
TGACCATGCTGGCATAATTC+AGG - chr4_1:51239034-51239053 Msa0553950:intron 45.0%
GTACCTGAATTATGCCAGCA+TGG + chr4_1:51239040-51239059 None:intergenic 45.0%
GAAAGTCTGCAACCACAATC+TGG + chr4_1:51239367-51239386 None:intergenic 45.0%
GGGAAGACGGATATCAACAT+CGG + chr4_1:51239513-51239532 None:intergenic 45.0%
! GTTTCTAGAGAGAAACGTCC+AGG - chr4_1:51239545-51239564 Msa0553950:CDS 45.0%
CGACCACAACAAAAAAGCTG+GGG - chr4_1:51239571-51239590 Msa0553950:CDS 45.0%
! GGCTCTAACCAATGCATTCA+TGG + chr4_1:51239597-51239616 None:intergenic 45.0%
!! GAATGCATTGGTTAGAGCCT+CGG - chr4_1:51239598-51239617 Msa0553950:CDS 45.0%
AACTCCAAAGCAATGAGGGA+AGG - chr4_1:51239677-51239696 Msa0553950:CDS 45.0%
CATACCTTCCCTCATTGCTT+TGG + chr4_1:51239684-51239703 None:intergenic 45.0%
!! TGCTTTATGATGGATCGTGG+TGG - chr4_1:51239704-51239723 Msa0553950:CDS 45.0%
GAGGGAATTGAACATAGCAG+AGG + chr4_1:51239736-51239755 None:intergenic 45.0%
GTTAACATGAGAGCCCTTGA+TGG - chr4_1:51239818-51239837 Msa0553950:CDS 45.0%
CAACACCTCAGAAGAGAACA+GGG - chr4_1:51239979-51239998 Msa0553950:CDS 45.0%
GTATGAGGACAAGACTGAGT+GGG - chr4_1:51240237-51240256 Msa0553950:intron 45.0%
TATGAGGACAAGACTGAGTG+GGG - chr4_1:51240238-51240257 Msa0553950:intron 45.0%
! CAGCGTGTTGGATGGATTTA+TGG - chr4_1:51240262-51240281 Msa0553950:intron 45.0%
TGGATCAGTTACTGAGGATG+TGG - chr4_1:51240282-51240301 Msa0553950:intron 45.0%
! AGGATGTGGTCACTGGTTAT+AGG - chr4_1:51240296-51240315 Msa0553950:intron 45.0%
CTCCCATCAATCTCACTGAT+AGG - chr4_1:51240383-51240402 Msa0553950:intron 45.0%
TCTCACTGATAGGTTGCATC+AGG - chr4_1:51240393-51240412 Msa0553950:intron 45.0%
GGTTGCATCAGGTTCTTAGA+TGG - chr4_1:51240404-51240423 Msa0553950:intron 45.0%
CAATGAACTGTCCAGAGAAG+AGG + chr4_1:51240585-51240604 None:intergenic 45.0%
TAAGTGGTCAGGAATTGAGC+TGG - chr4_1:51240684-51240703 Msa0553950:intron 45.0%
CAGGAATTGAGCTGGAAGAA+TGG - chr4_1:51240692-51240711 Msa0553950:intron 45.0%
GAATTGAGCTGGAAGAATGG+TGG - chr4_1:51240695-51240714 Msa0553950:intron 45.0%
! GGTGGAGAAATGAGCAGTTT+TGG - chr4_1:51240713-51240732 Msa0553950:intron 45.0%
!!! GAGCAGTTTTGGTTGATTGG+AGG - chr4_1:51240724-51240743 Msa0553950:intron 45.0%
GGTTTACTCAAAGTCGTTGC+AGG - chr4_1:51240778-51240797 Msa0553950:intron 45.0%
!! CTGTGGTATGGTGCTGTATA+TGG + chr4_1:51240962-51240981 None:intergenic 45.0%
TATACAGCACCATACCACAG+TGG - chr4_1:51240962-51240981 Msa0553950:intron 45.0%
TGAGCTATCATCATGGGAAC+TGG + chr4_1:51241185-51241204 None:intergenic 45.0%
!! AGAAGTGGTCTGGTTTGGTC+AGG + chr4_1:51235657-51235676 None:intergenic 50.0%
GTTACGGTTGGATGTAAGGG+AGG + chr4_1:51236932-51236951 None:intergenic 50.0%
CTTCGGCCAAATGTTACGGT+TGG + chr4_1:51236944-51236963 None:intergenic 50.0%
!! CATAGGTTGGTTATCCGGAG+TGG + chr4_1:51237062-51237081 None:intergenic 50.0%
CACTCCGGATAACCAACCTA+TGG - chr4_1:51237060-51237079 Msa0553950:CDS 50.0%
CACAGATGGCTGGTGCAAAA+GGG - chr4_1:51237206-51237225 Msa0553950:CDS 50.0%
! GGGTCGAAATGTGCTATTCC+TGG - chr4_1:51237226-51237245 Msa0553950:CDS 50.0%
TTTGGTGGAGGAAGTGGAAG+TGG + chr4_1:51237433-51237452 None:intergenic 50.0%
CTTCCACTTCCTCCACCAAA+CGG - chr4_1:51237433-51237452 Msa0553950:CDS 50.0%
TTCCACTTCCTCCACCAAAC+GGG - chr4_1:51237434-51237453 Msa0553950:CDS 50.0%
! ATTTTAGACCCCCCGTTTGG+TGG + chr4_1:51237448-51237467 None:intergenic 50.0%
ACCAAACGGGGGGTCTAAAA+TGG - chr4_1:51237447-51237466 Msa0553950:CDS 50.0%
! TCCATTTTAGACCCCCCGTT+TGG + chr4_1:51237451-51237470 None:intergenic 50.0%
! GCGCTGATGAGAAGTCAAAC+TGG - chr4_1:51237505-51237524 Msa0553950:CDS 50.0%
TGGCCAAAGGAAGGGGATTT+CGG - chr4_1:51237592-51237611 Msa0553950:intron 50.0%
! GGTCGGCTCATCAATTCAGT+TGG + chr4_1:51237646-51237665 None:intergenic 50.0%
CTGAATTGATGAGCCGACCA+TGG - chr4_1:51237647-51237666 Msa0553950:intron 50.0%
AATTGATGAGCCGACCATGG+AGG - chr4_1:51237650-51237669 Msa0553950:intron 50.0%
TTGTTAGTGGCCTCCATGGT+CGG + chr4_1:51237663-51237682 None:intergenic 50.0%
TTCCTTGTTAGTGGCCTCCA+TGG + chr4_1:51237667-51237686 None:intergenic 50.0%
CTGCTGTTCTCAGCCCATAT+CGG - chr4_1:51237701-51237720 Msa0553950:intron 50.0%
! CTCTTGTGTTGTTCCTGCAC+TGG - chr4_1:51238274-51238293 Msa0553950:CDS 50.0%
! TTGTGTTGTTCCTGCACTGG+AGG - chr4_1:51238277-51238296 Msa0553950:CDS 50.0%
! TGTGTTGTTCCTGCACTGGA+GGG - chr4_1:51238278-51238297 Msa0553950:CDS 50.0%
ACGGATGCAGTCTGGTTATG+GGG - chr4_1:51238315-51238334 Msa0553950:CDS 50.0%
GGCAGATCAGACTTTCCTGT+AGG + chr4_1:51238474-51238493 None:intergenic 50.0%
ACAGGAAAGTCTGATCTGCC+AGG - chr4_1:51238474-51238493 Msa0553950:CDS 50.0%
!! GTGTTTGCTGTGACAAGTGG+TGG + chr4_1:51238540-51238559 None:intergenic 50.0%
!! GAAAAGCATCTGACCTGCGA+CGG + chr4_1:51238860-51238879 None:intergenic 50.0%
! GGATGGCTGATGGATCTCAT+TGG - chr4_1:51238970-51238989 Msa0553950:intron 50.0%
! CTGATGGATCTCATTGGCCA+GGG - chr4_1:51238976-51238995 Msa0553950:intron 50.0%
! GAAGTGTTCAACCAAGTCCC+TGG + chr4_1:51238996-51239015 None:intergenic 50.0%
ACACTTCACCTGAGCACTCA+AGG - chr4_1:51239009-51239028 Msa0553950:intron 50.0%
CACTTCACCTGAGCACTCAA+GGG - chr4_1:51239010-51239029 Msa0553950:intron 50.0%
ACTTCACCTGAGCACTCAAG+GGG - chr4_1:51239011-51239030 Msa0553950:intron 50.0%
GCGGCTTATGCAATCCATTG+CGG - chr4_1:51239297-51239316 Msa0553950:intron 50.0%
GACGGATATCAACATCGGTC+AGG + chr4_1:51239508-51239527 None:intergenic 50.0%
!!! TGGCCCCAGCTTTTTTGTTG+TGG + chr4_1:51239577-51239596 None:intergenic 50.0%
!! AGAGCCCTTGATGGACTTCA+AGG - chr4_1:51239827-51239846 Msa0553950:CDS 50.0%
CTTCAAGGCCCGGTATATGT+AGG - chr4_1:51239842-51239861 Msa0553950:CDS 50.0%
! AGCCGGTTCCTACATATACC+GGG + chr4_1:51239853-51239872 None:intergenic 50.0%
! CAGCCGGTTCCTACATATAC+CGG + chr4_1:51239854-51239873 None:intergenic 50.0%
GAACCGGCTGTCTGTTTAGA+AGG - chr4_1:51239864-51239883 Msa0553950:CDS 50.0%
GAAAGATGCGCGGTCTTCTT+TGG + chr4_1:51239921-51239940 None:intergenic 50.0%
!! CCTGTTCTCTTCTGAGGTGT+TGG + chr4_1:51239981-51240000 None:intergenic 50.0%
CCAACACCTCAGAAGAGAAC+AGG - chr4_1:51239978-51239997 Msa0553950:CDS 50.0%
TAGTGCCCTGTTCTCTTCTG+AGG + chr4_1:51239987-51240006 None:intergenic 50.0%
! CAGAAGAGAACAGGGCACTA+AGG - chr4_1:51239987-51240006 Msa0553950:CDS 50.0%
! AGAGAACAGGGCACTAAGGA+TGG - chr4_1:51239991-51240010 Msa0553950:CDS 50.0%
! GAGAACAGGGCACTAAGGAT+GGG - chr4_1:51239992-51240011 Msa0553950:CDS 50.0%
ATTCCAGTGGCACAGTTCCA+AGG - chr4_1:51240094-51240113 Msa0553950:CDS 50.0%
ACAGCAGGATGATCAGCAAG+TGG + chr4_1:51240124-51240143 None:intergenic 50.0%
!! GGACGTCCATTTTTCACAGC+AGG + chr4_1:51240139-51240158 None:intergenic 50.0%
GTGAAAAATGGACGTCCTCC+TGG - chr4_1:51240142-51240161 Msa0553950:CDS 50.0%
ATCAAGCAGCTCACGAGGTA+TGG + chr4_1:51240176-51240195 None:intergenic 50.0%
GCTGCTTGATGCATCAACTG+TGG - chr4_1:51240186-51240205 Msa0553950:intron 50.0%
GGTATGAGGACAAGACTGAG+TGG - chr4_1:51240236-51240255 Msa0553950:intron 50.0%
GTTACTGAGGATGTGGTCAC+TGG - chr4_1:51240289-51240308 Msa0553950:intron 50.0%
GATTGATGGGAGCAGTTCCA+CGG + chr4_1:51240375-51240394 None:intergenic 50.0%
!! CAGGTTCTTAGATGGGCTAC+TGG - chr4_1:51240412-51240431 Msa0553950:intron 50.0%
GTTTGATGGGAAGAAGAGGG+AGG - chr4_1:51241052-51241071 Msa0553950:intron 50.0%
CATCATATCACTCCTCTGGG+TGG - chr4_1:51241116-51241135 Msa0553950:intron 50.0%
ACTGGAATGAACCGCCTATC+TGG + chr4_1:51241167-51241186 None:intergenic 50.0%
AGTGCACTTACCACCCACTC+CGG - chr4_1:51237045-51237064 Msa0553950:CDS 55.0%
! CCTTTTGCACCAGCCATCTG+TGG + chr4_1:51237208-51237227 None:intergenic 55.0%
CCACAGATGGCTGGTGCAAA+AGG - chr4_1:51237205-51237224 Msa0553950:CDS 55.0%
ATAGGAGATGGGATGTGCCC+AGG - chr4_1:51237349-51237368 Msa0553950:CDS 55.0%
TCCACTTCCTCCACCAAACG+GGG - chr4_1:51237435-51237454 Msa0553950:CDS 55.0%
! ACGGGGGGTCTAAAATGGAG+AGG - chr4_1:51237452-51237471 Msa0553950:CDS 55.0%
GACCATGGAGGCCACTAACA+AGG - chr4_1:51237662-51237681 Msa0553950:intron 55.0%
! TATGGGCTGAGAACAGCAGC+AGG + chr4_1:51237700-51237719 None:intergenic 55.0%
TATGTGTGACCCTCCAGTGC+AGG + chr4_1:51238290-51238309 None:intergenic 55.0%
GGGCAGTTGATCAAGAAGCC+AGG + chr4_1:51238376-51238395 None:intergenic 55.0%
TGACCTGCGACGGATAGAGT+CGG + chr4_1:51238850-51238869 None:intergenic 55.0%
! GCTGATGGATCTCATTGGCC+AGG - chr4_1:51238975-51238994 Msa0553950:intron 55.0%
GATCTCATTGGCCAGGGACT+TGG - chr4_1:51238982-51239001 Msa0553950:intron 55.0%
CTTTGCAACTGCGACCGCAA+TGG + chr4_1:51239314-51239333 None:intergenic 55.0%
TGATGTCACGGCCCAGATTG+TGG - chr4_1:51239352-51239371 Msa0553950:CDS 55.0%
AGCTGGGGCCATGAATGCAT+TGG - chr4_1:51239586-51239605 Msa0553950:CDS 55.0%
CGGGCCTTGAAGTCCATCAA+GGG + chr4_1:51239834-51239853 None:intergenic 55.0%
!! CCTTGATGGACTTCAAGGCC+CGG - chr4_1:51239832-51239851 Msa0553950:CDS 55.0%
GGCCCGGTATATGTAGGAAC+CGG - chr4_1:51239848-51239867 Msa0553950:CDS 55.0%
CTACCTTGGAACTGTGCCAC+TGG + chr4_1:51240100-51240119 None:intergenic 55.0%
CAGTGGCACAGTTCCAAGGT+AGG - chr4_1:51240098-51240117 Msa0553950:CDS 55.0%
GATCAGCAAGTGGCCTACCT+TGG + chr4_1:51240114-51240133 None:intergenic 55.0%
GATGCATCAAGCAGCTCACG+AGG + chr4_1:51240181-51240200 None:intergenic 55.0%
ACTAAACGTGACGCCTTCCG+TGG - chr4_1:51240355-51240374 Msa0553950:intron 55.0%
CATCTAGCTGCCGTGCTTCA+AGG - chr4_1:51240757-51240776 Msa0553950:intron 55.0%
! TAACCGGCTCCACTGTGGTA+TGG + chr4_1:51240974-51240993 None:intergenic 55.0%
! GTGGATTGATAGCCACCCAG+AGG + chr4_1:51241131-51241150 None:intergenic 55.0%
GTGGCTATCAATCCACCAGC+CGG - chr4_1:51241135-51241154 Msa0553950:intron 55.0%
ACCGCCTATCTGGTCTGTAC+CGG + chr4_1:51241157-51241176 None:intergenic 55.0%
! GGTTGGTTATCCGGAGTGGG+TGG + chr4_1:51237058-51237077 None:intergenic 60.0%
CCACTTCCTCCACCAAACGG+GGG - chr4_1:51237436-51237455 Msa0553950:CDS 60.0%
CACTTCCTCCACCAAACGGG+GGG - chr4_1:51237437-51237456 Msa0553950:CDS 60.0%
! TTAGACCCCCCGTTTGGTGG+AGG + chr4_1:51237445-51237464 None:intergenic 60.0%
GACCTGCGACGGATAGAGTC+GGG + chr4_1:51238849-51238868 None:intergenic 60.0%
TGGTCACCCCTTGAGTGCTC+AGG + chr4_1:51239020-51239039 None:intergenic 60.0%
CACTCAAGGGGTGACCATGC+TGG - chr4_1:51239023-51239042 Msa0553950:intron 60.0%
GCCTCGGCTGTCATGTCCAA+CGG - chr4_1:51239614-51239633 Msa0553950:CDS 60.0%
ACCGTTGGACATGACAGCCG+AGG + chr4_1:51239618-51239637 None:intergenic 60.0%
CCGGGCCTTGAAGTCCATCA+AGG + chr4_1:51239835-51239854 None:intergenic 60.0%
!! GGTATGGTGAGAGCACCAGG+AGG + chr4_1:51240160-51240179 None:intergenic 60.0%
!! CGAGGTATGGTGAGAGCACC+AGG + chr4_1:51240163-51240182 None:intergenic 60.0%
ACTGAGTGGGGACAGCGTGT+TGG - chr4_1:51240250-51240269 Msa0553950:intron 60.0%
AGTGGGGACAGCGTGTTGGA+TGG - chr4_1:51240254-51240273 Msa0553950:intron 60.0%
GATGGGAGCAGTTCCACGGA+AGG + chr4_1:51240371-51240390 None:intergenic 60.0%
AGAAGAGGGACAGTGCAGGC+AGG + chr4_1:51240570-51240589 None:intergenic 60.0%
CCAGAGAAGAGGGACAGTGC+AGG + chr4_1:51240574-51240593 None:intergenic 60.0%
CCTGCACTGTCCCTCTTCTC+TGG - chr4_1:51240571-51240590 Msa0553950:intron 60.0%
GCACCATACCACAGTGGAGC+CGG - chr4_1:51240968-51240987 Msa0553950:intron 60.0%
! CCTAGTAACCGGCTCCACTG+TGG + chr4_1:51240979-51240998 None:intergenic 60.0%
CCACAGTGGAGCCGGTTACT+AGG - chr4_1:51240976-51240995 Msa0553950:intron 60.0%
CAGTGGAGCCGGTTACTAGG+AGG - chr4_1:51240979-51240998 Msa0553950:intron 60.0%
!! ATCTGGTCTGTACCGGCTGG+TGG + chr4_1:51241150-51241169 None:intergenic 60.0%
! CCTATCTGGTCTGTACCGGC+TGG + chr4_1:51241153-51241172 None:intergenic 60.0%
CCAGCCGGTACAGACCAGAT+AGG - chr4_1:51241150-51241169 Msa0553950:intron 60.0%
GCCGGTACAGACCAGATAGG+CGG - chr4_1:51241153-51241172 Msa0553950:intron 60.0%
! CCCCCGTTTGGTGGAGGAAG+TGG + chr4_1:51237439-51237458 None:intergenic 65.0%
TGCCCGACTCTATCCGTCGC+AGG - chr4_1:51238844-51238863 Msa0553950:intron 65.0%
CGGTCTTCTTTGGCGCGTGG+AGG + chr4_1:51239911-51239930 None:intergenic 65.0%
GCGCGGTCTTCTTTGGCGCG+TGG + chr4_1:51239914-51239933 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 51235555 51241469 51235555 ID=Msa0553950;Name=Msa0553950
chr4_1 mRNA 51235555 51241469 51235555 ID=Msa0553950-mRNA-1;Parent=Msa0553950;Name=Msa0553950-mRNA-1;_AED=0.02;_eAED=0.02;_QI=308|1|1|1|0.66|0.5|4|275|1142
chr4_1 exon 51235555 51237584 51235555 ID=Msa0553950-mRNA-1:exon:14623;Parent=Msa0553950-mRNA-1
chr4_1 exon 51237969 51238776 51237969 ID=Msa0553950-mRNA-1:exon:14622;Parent=Msa0553950-mRNA-1
chr4_1 exon 51239302 51240201 51239302 ID=Msa0553950-mRNA-1:exon:14621;Parent=Msa0553950-mRNA-1
chr4_1 exon 51241196 51241469 51241196 ID=Msa0553950-mRNA-1:exon:14620;Parent=Msa0553950-mRNA-1
chr4_1 five_prime_UTR 51241196 51241469 51241196 ID=Msa0553950-mRNA-1:five_prime_utr;Parent=Msa0553950-mRNA-1
chr4_1 five_prime_UTR 51240168 51240201 51240168 ID=Msa0553950-mRNA-1:five_prime_utr;Parent=Msa0553950-mRNA-1
chr4_1 CDS 51239302 51240167 51239302 ID=Msa0553950-mRNA-1:cds;Parent=Msa0553950-mRNA-1
chr4_1 CDS 51237969 51238776 51237969 ID=Msa0553950-mRNA-1:cds;Parent=Msa0553950-mRNA-1
chr4_1 CDS 51235830 51237584 51235830 ID=Msa0553950-mRNA-1:cds;Parent=Msa0553950-mRNA-1
chr4_1 three_prime_UTR 51235555 51235829 51235555 ID=Msa0553950-mRNA-1:three_prime_utr;Parent=Msa0553950-mRNA-1
Gene Sequence

>Msa0553950

ATGAAGCCGAAATCATTACAAATGAGTAGATCATCTTTGTCAACATCTTCTGATGTATCTGAAGCACAGAAGCCTCCCTTACATCCAACCGTAACATTTGGCCGAAGAACTTCATCCGGTCGATACATCAGTTACTCCAGAGATGATCTTGATAGCGAGCTAGGAAGTAATGACTTCATGAACTATACAGTGCACTTACCACCCACTCCGGATAACCAACCTATGGATACCTCAATCTCGCAGAAAGTTGAGGAGCAGTATGTTTCAAGTTCTCTATTCACTGGAGGATTTAACAGTATTACCCGTGCACATCTAATGGATAAAGTTACAGAATCTGAAGTAAATCATCCACAGATGGCTGGTGCAAAAGGGTCGAAATGTGCTATTCCTGGCTGTGATTCTAAGGTGATGAGTGATGAACGTGGTGACGACATTCTTCCCTGTGAGTGTGATTATAAGATATGTAGAGATTGCTATATAGATGCAGTGAAAATAGGAGATGGGATGTGCCCAGGATGCAAAGAGCCTTATAAGAACACAGAACTTGATGAAGTGGCTGTGAATAATGGAGGGCCACTTCCACTTCCTCCACCAAACGGGGGGTCTAAAATGGAGAGGAGACTGTCCTTGATGAAATCGACAAAGTCTGCGCTGATGAGAAGTCAAACTGGAGACTTTGATCACAATCGATGGTTGTTTGAAACAAAGGGGACATATGGTTATGGCAATGCAATATGGCCAAAGGAAGGGGATTTCGGAAATGGAAAAGATGGTGATGTTTCTGAGCCAACTGAATTGATGAGCCGACCATGGAGGCCACTAACAAGGAAGTTGAAGATACCTGCTGCTGTTCTCAGCCCATATCGTCTCATCATTTTTATCCGTTTGGTTGCTCTTGTGTTGTTCCTGCACTGGAGGGTCACACATAAAAATACGGATGCAGTCTGGTTATGGGGCATGTCTATAGTTTGTGAATTATGGTTTGCTTTCTCCTGGCTTCTTGATCAACTGCCCAAGCTATGCCCAGTAAATCGTTCTACAGATCTTAATGTTCTGAAGGAAAAATTTGAATCACCAAGTCCTAACAATCCTACAGGAAAGTCTGATCTGCCAGGCATAGATATCTTTGTTTCAACCGCTGATCCTGAGAAAGAACCACCACTTGTCACAGCAAACACCATCTTGTCGATTTTAGCTGCTGACTATCCAGTTGAGAAGCTTTCTTGCTATGTTTCTGATGATGGAGGTGCACTTTTAACTTTTGAGGCAATGGCTGAGGCTGCTAGCTTTGCTAATAACTGGGTTCCATTCTGCCGCAAACATGATATAGAGCCTAGGAATCCTGAATCATACTTCAGCTTAAAGAGAGATCCTTACAAAAACAAAGTGAAACCTGATTTTGTGAAGGATCGTAGAAGGCTGAAGCGTGAGTATGATGAGTTCAAGGTCAGAATCAATGGTTTGCCCGACTCTATCCGTCGCAGGTCAGATGCTTTTCACGCAAGAGAGGAAATCAAGGCCATGAAACATCAGAGACAAAATAGGGGTGATGAACCTGTTGAGCCTATAAAGGTTCAAAAAGCAACATGGATGGCTGATGGATCTCATTGGCCAGGGACTTGGTTGAACACTTCACCTGAGCACTCAAGGGGTGACCATGCTGGCATAATTCAGGTGATGTTGAAACCTCCAAGTGATGAACCTCTTATTGGAAATGCTGATGATGCAAAGCTTATTGACCTGACCGATGTTGATATCCGTCTTCCCCTTCTTGTTTATGTTTCTAGAGAGAAACGTCCAGGTTACGACCACAACAAAAAAGCTGGGGCCATGAATGCATTGGTTAGAGCCTCGGCTGTCATGTCCAACGGTCCTTTTATACTTAACCTTGATTGTGATCACTATATATATAACTCCAAAGCAATGAGGGAAGGTATGTGCTTTATGATGGATCGTGGTGGTGATCGCCTCTGCTATGTTCAATTCCCTCAAAGGTTTGAGGGTATTGATCCCTCTGATAGATATGCTAATCACAACACCGTCTTCTTTGATGTTAACATGAGAGCCCTTGATGGACTTCAAGGCCCGGTATATGTAGGAACCGGCTGTCTGTTTAGAAGGTTTGCTCTTTATGGTTTTGATCCTCCACGCGCCAAAGAAGACCGCGCATCTTTCTGTAGTTGTTGCTTTGGGCGTAATAAGAAGAAGCATGCCAACACCTCAGAAGAGAACAGGGCACTAAGGATGGGTGACGACTCTGACGATGAAGAGATGAATCTTTCACAATTCTCGAAGAAATTTGGGAACTCAAATATCCTTATTGACTCAATTCCAGTGGCACAGTTCCAAGGTAGGCCACTTGCTGATCATCCTGCTGTGAAAAATGGACGTCCTCCTGGTGCTCTCACCATACCTCGTGAGCTGCTTGATGCATCAACTGTGGCAGAAGCCATCAGTGTGATTTCATGTTGGTATGAGGACAAGACTGAGTGGGGACAGCGTGTTGGATGGATTTATGGATCAGTTACTGAGGATGTGGTCACTGGTTATAGGATGCATAATAGAGGATGGAAGTCAGTTTACTGCGTAACTAAACGTGACGCCTTCCGTGGAACTGCTCCCATCAATCTCACTGATAGGTTGCATCAGGTTCTTAGATGGGCTACTGGCTCAGTTGAGATATTCTTCTCTAAAAACAATGCAATTATGGCCACCCGAAGAATGAAATTTCTTCAGAGGATAGCATACCTTAATGTTGGAATTTATCCATTCACTTCGTTTTTTCTTATTGTCTATTGCTTCCTGCCTGCACTGTCCCTCTTCTCTGGACAGTTCATTGTCCAAACACTCGATGTCACTTTTTTGGCTTACCTTTTGGCTATTACTGTGACACTGTGCATTCTTGCTGTGCTTGAAATTAAGTGGTCAGGAATTGAGCTGGAAGAATGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACTAGTGCACATCTAGCTGCCGTGCTTCAAGGTTTACTCAAAGTCGTTGCAGGGATTGAAATCTCATTCACCTTGACTTCAAAATCTGGTGGTGATGATGTTGACGACGAGTATGCTGATCTGTATATTGTCAAATGGTCATCCCTTATGATACCGCCAATTGTAATCATGATGGTGAACTTGATAGGAATAGCTGTCGGAGTTAGCAGAACCATATACAGCACCATACCACAGTGGAGCCGGTTACTAGGAGGTGTTTTCTTCAGTTTCTGGGTCTTGGCTCATCTCTATCCTTTTGCAAAAGGTTTGATGGGAAGAAGAGGGAGGACACCCACCATTGTTTTTGTATGGTCGGGTCTAATAGCAATCATCATATCACTCCTCTGGGTGGCTATCAATCCACCAGCCGGTACAGACCAGATAGGCGGTTCATTCCAGTTCCCATGA
Protein sequence

>Msa0553950

MKPKSLQMSRSSLSTSSDVSEAQKPPLHPTVTFGRRTSSGRYISYSRDDLDSELGSNDFMNYTVHLPPTPDNQPMDTSISQKVEEQYVSSSLFTGGFNSITRAHLMDKVTESEVNHPQMAGAKGSKCAIPGCDSKVMSDERGDDILPCECDYKICRDCYIDAVKIGDGMCPGCKEPYKNTELDEVAVNNGGPLPLPPPNGGSKMERRLSLMKSTKSALMRSQTGDFDHNRWLFETKGTYGYGNAIWPKEGDFGNGKDGDVSEPTELMSRPWRPLTRKLKIPAAVLSPYRLIIFIRLVALVLFLHWRVTHKNTDAVWLWGMSIVCELWFAFSWLLDQLPKLCPVNRSTDLNVLKEKFESPSPNNPTGKSDLPGIDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANNWVPFCRKHDIEPRNPESYFSLKRDPYKNKVKPDFVKDRRRLKREYDEFKVRINGLPDSIRRRSDAFHAREEIKAMKHQRQNRGDEPVEPIKVQKATWMADGSHWPGTWLNTSPEHSRGDHAGIIQVMLKPPSDEPLIGNADDAKLIDLTDVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAVMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRFALYGFDPPRAKEDRASFCSCCFGRNKKKHANTSEENRALRMGDDSDDEEMNLSQFSKKFGNSNILIDSIPVAQFQGRPLADHPAVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSKNNAIMATRRMKFLQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQTLDVTFLAYLLAITVTLCILAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVVAGIEISFTLTSKSGGDDVDDEYADLYIVKWSSLMIPPIVIMMVNLIGIAVGVSRTIYSTIPQWSRLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAIIISLLWVAINPPAGTDQIGGSFQFP*