AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1089180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1089180 MtrunA17_Chr2g0282041 94.872 39 2 0 25 63 164 202 8.13e-21 85.5
Msa1089180 MtrunA17_Chr4g0047751 89.744 39 4 0 25 63 175 213 5.81e-20 82.8
Msa1089180 MtrunA17_Chr1g0199321 92.857 42 3 0 57 98 90 131 8.38e-18 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1089180 AT4G21660.1 89.744 39 4 0 25 63 180 218 7.01e-20 83.2
Msa1089180 AT4G21660.2 91.892 37 3 0 25 61 180 216 1.84e-19 82.0
Msa1089180 AT4G21660.3 94.444 36 2 0 25 60 180 215 7.20e-19 80.1

Find 75 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGAAGAAGAGAAAGAAAA+AGG 0.205812 7_3:-2518079 Msa1089180:five_prime_UTR
TTAACTAAGTGGAAACTATT+TGG 0.213882 7_3:+2514040 None:intergenic
GTTTGATTTCTAAGTATAAT+TGG 0.228548 7_3:-2514601 Msa1089180:three_prime_UTR
GTTTGTTTACTTGGGTTAAT+AGG 0.268413 7_3:-2514579 Msa1089180:three_prime_UTR
TGAGATTGAAGAGGGTTGTT+AGG 0.274491 7_3:-2517754 Msa1089180:five_prime_UTR
GTATAATTGGTTTGTTTACT+TGG 0.295577 7_3:-2514588 Msa1089180:three_prime_UTR
TTCCACCAGATGATTATTCT+TGG 0.308847 7_3:-2517700 Msa1089180:five_prime_UTR
GATTATTCTTGGAGGAAATA+TGG 0.321289 7_3:-2517689 Msa1089180:five_prime_UTR
ACCATCTTCAAGCTATTTGC+AGG 0.337292 7_3:+2517728 None:intergenic
TTTATGTTGAACATGCTAGA+TGG 0.339823 7_3:-2514131 Msa1089180:three_prime_UTR
ATCTTACATTCTTGAATTTG+TGG 0.359178 7_3:-2514519 Msa1089180:three_prime_UTR
GTTGCCTCTTAATCTTGCTT+TGG 0.364455 7_3:-2514478 Msa1089180:three_prime_UTR
GTTATGCACTGTCGACGTTC+TGG 0.366066 7_3:-2514089 Msa1089180:three_prime_UTR
GTACTCCCTCAAGCTTATAA+TGG 0.373437 7_3:-2513963 Msa1089180:three_prime_UTR
TGCAGCAGATCCTAAGTTGC+TGG 0.399151 7_3:-2516812 Msa1089180:CDS
GAGATTGAAGAGGGTTGTTA+GGG 0.422799 7_3:-2517753 Msa1089180:five_prime_UTR
ATGTTCAACATAAAATTTCC+TGG 0.426145 7_3:+2514140 None:intergenic
TAAAACCATTATAAGCTTGA+GGG 0.426427 7_3:+2513958 None:intergenic
GTTTATAGATTCTGTGGTAG+TGG 0.427727 7_3:-2514281 Msa1089180:three_prime_UTR
CAATGAAGAGAGAAGAGGAT+TGG 0.428871 7_3:-2518108 Msa1089180:five_prime_UTR
TTAGATGGACAATGGATTTG+AGG 0.430824 7_3:-2517320 Msa1089180:intron
GAGAGTATAGGTATATTTGA+TGG 0.439300 7_3:-2514217 Msa1089180:three_prime_UTR
AGTGCCAAAGCAAGATTAAG+AGG 0.439937 7_3:+2514474 None:intergenic
TCAAATTCCATGCCCACATA+TGG 0.442928 7_3:+2514174 None:intergenic
AAGAAAGAAGAAAGAAGGAC+CGG 0.450148 7_3:-2518149 Msa1089180:five_prime_UTR
GACAGAAGAAAGAAGAAAGA+AGG 0.451806 7_3:-2518154 Msa1089180:five_prime_UTR
TTGAAAATTTAGATGGACAA+TGG 0.453902 7_3:-2517328 Msa1089180:intron
TTTACATGCCATAGGCTTTG+CGG 0.460457 7_3:-2515275 Msa1089180:intron
TGGTAACTAAGAAGAGGAAG+AGG 0.462361 7_3:-2514679 Msa1089180:three_prime_UTR
TTACTTGGGTTAATAGGCTT+AGG 0.465764 7_3:-2514573 Msa1089180:three_prime_UTR
GAAGGACCGGGGAGAAGAGA+AGG 0.471101 7_3:-2518136 Msa1089180:five_prime_UTR
ATCAGAGGAATTTCAAGAAT+AGG 0.474885 7_3:-2515166 Msa1089180:intron
TATAATTGGTTTGTTTACTT+GGG 0.474988 7_3:-2514587 Msa1089180:three_prime_UTR
GTTGAACATGCTAGATGGGT+TGG 0.475912 7_3:-2514126 Msa1089180:three_prime_UTR
AATATACACAAGCTTGAACT+TGG 0.479123 7_3:+2513873 None:intergenic
CTGTACAATCTTATACATAT+AGG 0.483759 7_3:-2514434 Msa1089180:three_prime_UTR
CACCAGATGATTATTCTTGG+AGG 0.491094 7_3:-2517697 Msa1089180:five_prime_UTR
GTTCTTCCTTCTCTTCTCCC+CGG 0.494828 7_3:+2518130 None:intergenic
TTCCTCCAAGAATAATCATC+TGG 0.495254 7_3:+2517695 None:intergenic
TCCTGCAAATAGCTTGAAGA+TGG 0.501274 7_3:-2517729 Msa1089180:five_prime_UTR
TCTGCACAAATTGTATCATC+AGG 0.501835 7_3:+2514305 None:intergenic
AACTAAGAAGAGGAAGAGGA+TGG 0.505663 7_3:-2514675 Msa1089180:three_prime_UTR
TTAAAACCATTATAAGCTTG+AGG 0.508833 7_3:+2513957 None:intergenic
AGGGCAATGAGGCAGATCAT+AGG 0.515232 7_3:-2514249 Msa1089180:three_prime_UTR
CTAAGATCTACTTAACTAAG+TGG 0.528930 7_3:+2514029 None:intergenic
ACAAGCAGCTTCTGATATGA+TGG 0.532447 7_3:-2517293 Msa1089180:CDS
AATTTGATTCTGAAGCTGCC+AGG 0.538610 7_3:-2514158 Msa1089180:three_prime_UTR
GCAGGTTTGAGTTCAAAAGA+TGG 0.539433 7_3:-2514699 Msa1089180:intron
TGTGACCAATGCCTAGGTAC+AGG 0.544976 7_3:+2516760 None:intergenic
TTATGTTGAACATGCTAGAT+GGG 0.554489 7_3:-2514130 Msa1089180:three_prime_UTR
ATGGACAATGGATTTGAGGA+TGG 0.554723 7_3:-2517316 Msa1089180:CDS
TGTGGTAGTGGATTCAGACT+AGG 0.556471 7_3:-2514269 Msa1089180:three_prime_UTR
TAGTAAAATGAGATTGAAGA+GGG 0.556603 7_3:-2517762 Msa1089180:five_prime_UTR
AGAAAGAAGAAAGAAGGACC+GGG 0.557573 7_3:-2518148 Msa1089180:five_prime_UTR
AGGTGTCTAGAAGAGAGTAT+AGG 0.561124 7_3:-2514229 Msa1089180:three_prime_UTR
AAGAACAATGAAGAGAGAAG+AGG 0.569427 7_3:-2518113 Msa1089180:five_prime_UTR
GTAGTAAAATGAGATTGAAG+AGG 0.570122 7_3:-2517763 Msa1089180:five_prime_UTR
CTGGAATCGATGGCAGAACA+AGG 0.571906 7_3:-2514070 Msa1089180:three_prime_UTR
GTGGTAGTGGATTCAGACTA+GGG 0.573062 7_3:-2514268 Msa1089180:three_prime_UTR
CTCCAAGAATAATCATCTGG+TGG 0.575066 7_3:+2517698 None:intergenic
TTAACAGCCATATGTGGGCA+TGG 0.586632 7_3:-2514181 Msa1089180:three_prime_UTR
GCAGAAGTTTATAGATTCTG+TGG 0.591086 7_3:-2514287 Msa1089180:three_prime_UTR
TGTCGACGTTCTGGAATCGA+TGG 0.593224 7_3:-2514080 Msa1089180:three_prime_UTR
AAAAGATGGTAACTAAGAAG+AGG 0.594713 7_3:-2514685 Msa1089180:three_prime_UTR
CTGTACCTGTACCTAGGCAT+TGG 0.613828 7_3:-2516765 Msa1089180:CDS
GAAAGAAGAAAGAAGGACCG+GGG 0.622254 7_3:-2518147 Msa1089180:five_prime_UTR
AGGATGGAGTTGTCAAAACA+TGG 0.622958 7_3:-2514659 Msa1089180:three_prime_UTR
AGAACGTCGACAGTGCATAA+CGG 0.641704 7_3:+2514091 None:intergenic
GTAACACTGTACCTGTACCT+AGG 0.642872 7_3:-2516771 Msa1089180:CDS
GGATTCAGACTAGGGCAATG+AGG 0.652789 7_3:-2514260 Msa1089180:three_prime_UTR
CAACAAACTTGAGATATCAG+AGG 0.659687 7_3:-2515181 Msa1089180:CDS
AATTTGTTGGAACTTATCTG+CGG 0.660064 7_3:+2515242 None:intergenic
ACATGCCATAGGCTTTGCGG+AGG 0.662074 7_3:-2515272 Msa1089180:intron
CTTGAACTTGGAATGATGCG+CGG 0.667280 7_3:+2513885 None:intergenic
TGATGGCAAGCAGTCAACAG+AGG 0.701292 7_3:-2517276 Msa1089180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTACAGATTTTTTTT+TGG - chr7_3:2513946-2513965 Msa1089180:three_prime_UTR 10.0%
!! TGACAAAAAAATATAAAATT+GGG + chr7_3:2514111-2514130 None:intergenic 10.0%
!! TTGACAAAAAAATATAAAAT+TGG + chr7_3:2514112-2514131 None:intergenic 10.0%
!! AATCAAAATAACATAAAAAA+GGG + chr7_3:2515006-2515025 None:intergenic 10.0%
!! AAATCAAAATAACATAAAAA+AGG + chr7_3:2515007-2515026 None:intergenic 10.0%
!! GACAAAAAAATATAAAATTG+GGG + chr7_3:2514110-2514129 None:intergenic 15.0%
!! CATACAACAAATAAATTAAA+AGG + chr7_3:2514141-2514160 None:intergenic 15.0%
!! TGTAAATAACAAATAAGTAA+TGG + chr7_3:2514612-2514631 None:intergenic 15.0%
!!! CATCTAAATTTTCAATAAAA+GGG + chr7_3:2514639-2514658 None:intergenic 15.0%
!!! TGATGATGTATTAAATTAAA+AGG - chr7_3:2515905-2515924 Msa1089180:intron 15.0%
!! TTAAAATTAATGTCAAAGAA+AGG + chr7_3:2516975-2516994 None:intergenic 15.0%
!!! TTCTTTGACATTAATTTTAA+TGG - chr7_3:2516975-2516994 Msa1089180:intron 15.0%
!!! TTTTAAAGTTTCATGTTAAA+TGG - chr7_3:2518128-2518147 Msa1089180:five_prime_UTR 15.0%
!!! TTACAGATTTTTTTTTGGTT+AGG - chr7_3:2513951-2513970 Msa1089180:three_prime_UTR 20.0%
!!! TACAGATTTTTTTTTGGTTA+GGG - chr7_3:2513952-2513971 Msa1089180:three_prime_UTR 20.0%
!! AAATATAAAATTGGGGTTTA+GGG + chr7_3:2514103-2514122 None:intergenic 20.0%
!! AAAATATAAAATTGGGGTTT+AGG + chr7_3:2514104-2514123 None:intergenic 20.0%
!!! ATTTTTCTGATTTTCTGAAT+TGG - chr7_3:2514177-2514196 Msa1089180:three_prime_UTR 20.0%
!!! TTTTTCTGATTTTCTGAATT+GGG - chr7_3:2514178-2514197 Msa1089180:three_prime_UTR 20.0%
!!! TGTATCTTTGATTTTAATTG+AGG - chr7_3:2514350-2514369 Msa1089180:three_prime_UTR 20.0%
!!! GTATCTTTGATTTTAATTGA+GGG - chr7_3:2514351-2514370 Msa1089180:three_prime_UTR 20.0%
!!! GAAGTATCTTTTGATTTTTT+TGG - chr7_3:2514519-2514538 Msa1089180:three_prime_UTR 20.0%
!!! CCATCTAAATTTTCAATAAA+AGG + chr7_3:2514640-2514659 None:intergenic 20.0%
!!! CCTTTTATTGAAAATTTAGA+TGG - chr7_3:2514637-2514656 Msa1089180:three_prime_UTR 20.0%
!!! TTTGCTATAATTTCATTTTC+AGG - chr7_3:2515124-2515143 Msa1089180:intron 20.0%
!!! TATAATTTCATTTTCAGGTT+TGG - chr7_3:2515129-2515148 Msa1089180:intron 20.0%
!!! ATAATTTCATTTTCAGGTTT+GGG - chr7_3:2515130-2515149 Msa1089180:intron 20.0%
!!! CAGATTTATTGATTATTCAA+TGG - chr7_3:2515650-2515669 Msa1089180:intron 20.0%
!! AACTTACAGAATATTGAAAA+GGG + chr7_3:2516152-2516171 None:intergenic 20.0%
!!! TCTTTTCGAAATTAAACTTT+AGG + chr7_3:2516454-2516473 None:intergenic 20.0%
!!! TTTATTTCTACATGATTTCT+TGG - chr7_3:2517048-2517067 Msa1089180:intron 20.0%
!!! GTTTGATTTCTAAGTATAAT+TGG - chr7_3:2517371-2517390 Msa1089180:intron 20.0%
!!! TATAATTGGTTTGTTTACTT+GGG - chr7_3:2517385-2517404 Msa1089180:intron 20.0%
!!! ATTACATTTTTGAATAGTCA+TGG + chr7_3:2517638-2517657 None:intergenic 20.0%
!!! AATGGTTTTAAATTAAAGTG+CGG - chr7_3:2518027-2518046 Msa1089180:intron 20.0%
!!! GGATTGAGATTTTTAATTCA+AGG - chr7_3:2513914-2513933 Msa1089180:three_prime_UTR 25.0%
!!! TTTTGTTTTGTTGAAGTTGT+TGG - chr7_3:2514026-2514045 Msa1089180:three_prime_UTR 25.0%
! TAGTAAAATGAGATTGAAGA+GGG - chr7_3:2514210-2514229 Msa1089180:three_prime_UTR 25.0%
!!! GTCTTTTGATTTTGGATTTT+GGG - chr7_3:2514378-2514397 Msa1089180:three_prime_UTR 25.0%
!!! CAAATTTTTTCACTTCTTTG+TGG + chr7_3:2514451-2514470 None:intergenic 25.0%
! ATTTGAGAGAGAAGAAATAA+TGG - chr7_3:2514466-2514485 Msa1089180:three_prime_UTR 25.0%
! TTTGAGAGAGAAGAAATAAT+GGG - chr7_3:2514467-2514486 Msa1089180:three_prime_UTR 25.0%
!! TTAGTCTGAGATAGAAATAA+TGG - chr7_3:2514491-2514510 Msa1089180:three_prime_UTR 25.0%
!! TAGTCTGAGATAGAAATAAT+GGG - chr7_3:2514492-2514511 Msa1089180:three_prime_UTR 25.0%
! TTGAAAATTTAGATGGACAA+TGG - chr7_3:2514644-2514663 Msa1089180:three_prime_UTR 25.0%
! ACTTTCATAGTGATTTAGTT+AGG - chr7_3:2514826-2514845 Msa1089180:intron 25.0%
! TAGGAACTGAAAACTAAATT+TGG - chr7_3:2514845-2514864 Msa1089180:intron 25.0%
! TAACATAAAAAAGGGTAACT+TGG + chr7_3:2514998-2515017 None:intergenic 25.0%
! AAATCTCATCTTTAGCAAAT+GGG + chr7_3:2515070-2515089 None:intergenic 25.0%
! AAAATCTCATCTTTAGCAAA+TGG + chr7_3:2515071-2515090 None:intergenic 25.0%
!! ACAAAAGAGAAAATTTTTGC+AGG - chr7_3:2515232-2515251 Msa1089180:CDS 25.0%
! GTAATTGATCTACTAACAAT+TGG - chr7_3:2515459-2515478 Msa1089180:intron 25.0%
!! CTTTAAAAACTAAAAGTCAG+AGG + chr7_3:2515518-2515537 None:intergenic 25.0%
!! TAAATCTGAGATTTAAGAAG+AGG + chr7_3:2515638-2515657 None:intergenic 25.0%
!! CAATAATTTTTCGTAGGATA+TGG - chr7_3:2515765-2515784 Msa1089180:intron 25.0%
! AATTGAAAGATAACAGCAAA+AGG + chr7_3:2516085-2516104 None:intergenic 25.0%
! GAATTAAAATGCACAAATAG+TGG + chr7_3:2516130-2516149 None:intergenic 25.0%
! CAACTTACAGAATATTGAAA+AGG + chr7_3:2516153-2516172 None:intergenic 25.0%
! TTTCAATATTCTGTAAGTTG+CGG - chr7_3:2516153-2516172 Msa1089180:intron 25.0%
! CATTGAATCATTGAATCTAA+AGG - chr7_3:2516304-2516323 Msa1089180:intron 25.0%
!!! ACTAGCTGAATATTTTAATG+TGG - chr7_3:2516541-2516560 Msa1089180:intron 25.0%
! AATTGACTAAGATACATGTT+TGG + chr7_3:2516648-2516667 None:intergenic 25.0%
!!! CAATTTTTTCGGTAATTTGT+TGG + chr7_3:2516746-2516765 None:intergenic 25.0%
! CTACATCAAAACTTAAAGAA+AGG + chr7_3:2517017-2517036 None:intergenic 25.0%
!!! GTATAATTGGTTTGTTTACT+TGG - chr7_3:2517384-2517403 Msa1089180:intron 25.0%
! ATCTTACATTCTTGAATTTG+TGG - chr7_3:2517453-2517472 Msa1089180:intron 25.0%
! CTGTACAATCTTATACATAT+AGG - chr7_3:2517538-2517557 Msa1089180:intron 25.0%
!! TATAGGCTATTAGTAGTTTT+TGG - chr7_3:2517555-2517574 Msa1089180:intron 25.0%
! ATGTTCAACATAAAATTTCC+TGG + chr7_3:2517835-2517854 None:intergenic 25.0%
! TTAACTAAGTGGAAACTATT+TGG + chr7_3:2517935-2517954 None:intergenic 25.0%
! TAAAACCATTATAAGCTTGA+GGG + chr7_3:2518017-2518036 None:intergenic 25.0%
! TTAAAACCATTATAAGCTTG+AGG + chr7_3:2518018-2518037 None:intergenic 25.0%
TGAGAAGAAGAGAAAGAAAA+AGG - chr7_3:2513893-2513912 Msa1089180:three_prime_UTR 30.0%
GTAGTAAAATGAGATTGAAG+AGG - chr7_3:2514209-2514228 Msa1089180:three_prime_UTR 30.0%
GATTATTCTTGGAGGAAATA+TGG - chr7_3:2514283-2514302 Msa1089180:three_prime_UTR 30.0%
!!! TTTGATTTTAATTGAGGGTC+TGG - chr7_3:2514356-2514375 Msa1089180:three_prime_UTR 30.0%
!!! GGTCTTTTGATTTTGGATTT+TGG - chr7_3:2514377-2514396 Msa1089180:three_prime_UTR 30.0%
GAACTGTTGATGTCTTATAA+TGG - chr7_3:2514942-2514961 Msa1089180:intron 30.0%
CAATGTGTAAAATTGCTCAA+AGG - chr7_3:2515402-2515421 Msa1089180:intron 30.0%
TGTAAAATTGCTCAAAGGAA+TGG - chr7_3:2515407-2515426 Msa1089180:intron 30.0%
GTAAAATTGCTCAAAGGAAT+GGG - chr7_3:2515408-2515427 Msa1089180:intron 30.0%
CAGAGGAAAAACAATAACAT+AGG + chr7_3:2515501-2515520 None:intergenic 30.0%
AAGAGAGAACATAGAAACAA+TGG + chr7_3:2515735-2515754 None:intergenic 30.0%
! GCAACACAATAATTTTTCGT+AGG - chr7_3:2515759-2515778 Msa1089180:intron 30.0%
AGAAAAACTGATAACCACAT+TGG + chr7_3:2516362-2516381 None:intergenic 30.0%
TGTATTCCTATGAACTGAAT+AGG - chr7_3:2516400-2516419 Msa1089180:intron 30.0%
AACCTATGAACTGAATAGAA+CGG - chr7_3:2516425-2516444 Msa1089180:intron 30.0%
! AAAAGTGTATTCCTGAAATC+AGG - chr7_3:2516476-2516495 Msa1089180:intron 30.0%
!! AATTTGTTGGAACTTATCTG+CGG + chr7_3:2516733-2516752 None:intergenic 30.0%
!!! CAATGCAGCTTCAATTTTTT+CGG + chr7_3:2516757-2516776 None:intergenic 30.0%
ATCAGAGGAATTTCAAGAAT+AGG - chr7_3:2516806-2516825 Msa1089180:CDS 30.0%
TTAATGTCAAAGAAAGGTCA+AGG + chr7_3:2516969-2516988 None:intergenic 30.0%
AAAAGATGGTAACTAAGAAG+AGG - chr7_3:2517287-2517306 Msa1089180:CDS 30.0%
GTTTGTTTACTTGGGTTAAT+AGG - chr7_3:2517393-2517412 Msa1089180:intron 30.0%
! TGGCACTATTATAGTTTTTG+AGG - chr7_3:2517514-2517533 Msa1089180:intron 30.0%
! GAGAGTATAGGTATATTTGA+TGG - chr7_3:2517755-2517774 Msa1089180:five_prime_UTR 30.0%
!!! TTTGTTTTAACAGCCATATG+TGG - chr7_3:2517785-2517804 Msa1089180:intron 30.0%
!!! TTGTTTTAACAGCCATATGT+GGG - chr7_3:2517786-2517805 Msa1089180:intron 30.0%
TTTATGTTGAACATGCTAGA+TGG - chr7_3:2517841-2517860 Msa1089180:intron 30.0%
TTATGTTGAACATGCTAGAT+GGG - chr7_3:2517842-2517861 Msa1089180:intron 30.0%
CTAAGATCTACTTAACTAAG+TGG + chr7_3:2517946-2517965 None:intergenic 30.0%
AATATACACAAGCTTGAACT+TGG + chr7_3:2518102-2518121 None:intergenic 30.0%
GACAGAAGAAAGAAGAAAGA+AGG - chr7_3:2513818-2513837 Msa1089180:three_prime_UTR 35.0%
AAGAAAGAAGAAAGAAGGAC+CGG - chr7_3:2513823-2513842 Msa1089180:three_prime_UTR 35.0%
AAGAACAATGAAGAGAGAAG+AGG - chr7_3:2513859-2513878 Msa1089180:three_prime_UTR 35.0%
! TAAAATTGGGGTTTAGGGTT+CGG + chr7_3:2514098-2514117 None:intergenic 35.0%
TTCCACCAGATGATTATTCT+TGG - chr7_3:2514272-2514291 Msa1089180:three_prime_UTR 35.0%
TTCCTCCAAGAATAATCATC+TGG + chr7_3:2514280-2514299 None:intergenic 35.0%
! TTAGATGGACAATGGATTTG+AGG - chr7_3:2514652-2514671 Msa1089180:three_prime_UTR 35.0%
CAGTCAACAGAGGAAAAAAA+GGG - chr7_3:2514706-2514725 Msa1089180:intron 35.0%
AATCACTATGAAAGTGAGAG+TGG + chr7_3:2514821-2514840 None:intergenic 35.0%
ATCAACAGTTCAGTCATTGA+TGG + chr7_3:2514933-2514952 None:intergenic 35.0%
AGCTACAAAGAATGCAAGTT+TGG + chr7_3:2515095-2515114 None:intergenic 35.0%
TTCAAAAACACCAGCAACTT+AGG + chr7_3:2515173-2515192 None:intergenic 35.0%
AAACAAAAGCAGTGTACTTC+AGG + chr7_3:2515375-2515394 None:intergenic 35.0%
TGATCTACTAACAATTGGTG+AGG - chr7_3:2515464-2515483 Msa1089180:intron 35.0%
CATGTCTTAACACTTGCAAT+AGG - chr7_3:2515692-2515711 Msa1089180:intron 35.0%
TCATTGACAATGCTTAAGTG+AGG - chr7_3:2515951-2515970 Msa1089180:intron 35.0%
AACACTCTTTCTTTGCCTAA+TGG + chr7_3:2516016-2516035 None:intergenic 35.0%
! AGAGTGTTCTCTTTCTTTGA+AGG - chr7_3:2516028-2516047 Msa1089180:intron 35.0%
TGAACACACACTTCAAATTC+AGG + chr7_3:2516215-2516234 None:intergenic 35.0%
TGATTCAATGAAAGTCAAGC+AGG + chr7_3:2516294-2516313 None:intergenic 35.0%
! GGTTTTCCTATTCAGTTCAT+AGG + chr7_3:2516409-2516428 None:intergenic 35.0%
ATCCGTTCTATTCAGTTCAT+AGG + chr7_3:2516430-2516449 None:intergenic 35.0%
TGAAAGGAAAAAACTTGCAC+AGG + chr7_3:2516507-2516526 None:intergenic 35.0%
TTCAGATGCTATATGCTTTC+TGG - chr7_3:2516608-2516627 Msa1089180:intron 35.0%
!! ATGCTATATGCTTTCTGGTT+CGG - chr7_3:2516613-2516632 Msa1089180:intron 35.0%
!! ATTGTTGCTTTACATGCCAT+AGG - chr7_3:2516689-2516708 Msa1089180:intron 35.0%
CAACAAACTTGAGATATCAG+AGG - chr7_3:2516791-2516810 Msa1089180:CDS 35.0%
AAAACGTAGTTAGGAGTAAG+GGG + chr7_3:2516858-2516877 None:intergenic 35.0%
CAAAACGTAGTTAGGAGTAA+GGG + chr7_3:2516859-2516878 None:intergenic 35.0%
TCAAAACGTAGTTAGGAGTA+AGG + chr7_3:2516860-2516879 None:intergenic 35.0%
AGACTCTTCAAAACGTAGTT+AGG + chr7_3:2516867-2516886 None:intergenic 35.0%
!!! TACGTTTTGAAGAGTCTGAT+TGG - chr7_3:2516870-2516889 Msa1089180:intron 35.0%
!! TGAAGAGTCTGATTGGTTTA+TGG - chr7_3:2516877-2516896 Msa1089180:intron 35.0%
TTGAACTACCAAAGAAGCAA+TGG - chr7_3:2516916-2516935 Msa1089180:intron 35.0%
! TCAAACCTGCAATTTTTGTC+GGG + chr7_3:2517263-2517282 None:intergenic 35.0%
! CTCAAACCTGCAATTTTTGT+CGG + chr7_3:2517264-2517283 None:intergenic 35.0%
TTACTTGGGTTAATAGGCTT+AGG - chr7_3:2517399-2517418 Msa1089180:intron 35.0%
!! AGGCTATTAGTAGTTTTTGG+TGG - chr7_3:2517558-2517577 Msa1089180:intron 35.0%
TCTGCACAAATTGTATCATC+AGG + chr7_3:2517670-2517689 None:intergenic 35.0%
GCAGAAGTTTATAGATTCTG+TGG - chr7_3:2517685-2517704 Msa1089180:five_prime_UTR 35.0%
GTTTATAGATTCTGTGGTAG+TGG - chr7_3:2517691-2517710 Msa1089180:five_prime_UTR 35.0%
AGAAAGAAGAAAGAAGGACC+GGG - chr7_3:2513824-2513843 Msa1089180:three_prime_UTR 40.0%
CAATGAAGAGAGAAGAGGAT+TGG - chr7_3:2513864-2513883 Msa1089180:three_prime_UTR 40.0%
TGAGATTGAAGAGGGTTGTT+AGG - chr7_3:2514218-2514237 Msa1089180:three_prime_UTR 40.0%
GAGATTGAAGAGGGTTGTTA+GGG - chr7_3:2514219-2514238 Msa1089180:three_prime_UTR 40.0%
TCCTGCAAATAGCTTGAAGA+TGG - chr7_3:2514243-2514262 Msa1089180:three_prime_UTR 40.0%
ACCATCTTCAAGCTATTTGC+AGG + chr7_3:2514247-2514266 None:intergenic 40.0%
CTCCAAGAATAATCATCTGG+TGG + chr7_3:2514277-2514296 None:intergenic 40.0%
CACCAGATGATTATTCTTGG+AGG - chr7_3:2514275-2514294 Msa1089180:three_prime_UTR 40.0%
!!! AGGGTCTGGTCTTTTGATTT+TGG - chr7_3:2514370-2514389 Msa1089180:three_prime_UTR 40.0%
! ATGGACAATGGATTTGAGGA+TGG - chr7_3:2514656-2514675 Msa1089180:three_prime_UTR 40.0%
ACAAGCAGCTTCTGATATGA+TGG - chr7_3:2514679-2514698 Msa1089180:three_prime_UTR 40.0%
GCAGTCAACAGAGGAAAAAA+AGG - chr7_3:2514705-2514724 Msa1089180:intron 40.0%
TATGAAAGTGAGAGTGGTGA+TGG + chr7_3:2514815-2514834 None:intergenic 40.0%
TCAGAATTGCTAGATGCTTC+TGG - chr7_3:2514893-2514912 Msa1089180:intron 40.0%
AACAGTTCAGTCATTGATGG+AGG + chr7_3:2514930-2514949 None:intergenic 40.0%
CAGCTTATTCAGATCAGACT+TGG + chr7_3:2515331-2515350 None:intergenic 40.0%
CTCAAAGGAATGGGAATGAA+GGG - chr7_3:2515417-2515436 Msa1089180:intron 40.0%
!! AACACTTGCTATAGAGAGCA+TGG - chr7_3:2515800-2515819 Msa1089180:intron 40.0%
! TAGAGAGCATGGTACTCATT+AGG - chr7_3:2515811-2515830 Msa1089180:intron 40.0%
TTGACAATGCTTAAGTGAGG+TGG - chr7_3:2515954-2515973 Msa1089180:intron 40.0%
TGACAATGCTTAAGTGAGGT+GGG - chr7_3:2515955-2515974 Msa1089180:intron 40.0%
TGAGGTGGGTAAGTTGTAAT+GGG - chr7_3:2515969-2515988 Msa1089180:intron 40.0%
GGGAATACAAGATTATTGCG+AGG - chr7_3:2515989-2516008 Msa1089180:intron 40.0%
AGATTATTGCGAGGACCATT+AGG - chr7_3:2515998-2516017 Msa1089180:intron 40.0%
TTCTTCATGCATGACCAATG+TGG - chr7_3:2516345-2516364 Msa1089180:intron 40.0%
TTTACATGCCATAGGCTTTG+CGG - chr7_3:2516697-2516716 Msa1089180:intron 40.0%
GGTTTATGGTGTGATAGCAA+TGG - chr7_3:2516891-2516910 Msa1089180:intron 40.0%
! GCAGGTTTGAGTTCAAAAGA+TGG - chr7_3:2517273-2517292 Msa1089180:CDS 40.0%
TGGTAACTAAGAAGAGGAAG+AGG - chr7_3:2517293-2517312 Msa1089180:CDS 40.0%
AACTAAGAAGAGGAAGAGGA+TGG - chr7_3:2517297-2517316 Msa1089180:CDS 40.0%
AGGATGGAGTTGTCAAAACA+TGG - chr7_3:2517313-2517332 Msa1089180:CDS 40.0%
GTTGCCTCTTAATCTTGCTT+TGG - chr7_3:2517494-2517513 Msa1089180:intron 40.0%
AGTGCCAAAGCAAGATTAAG+AGG + chr7_3:2517501-2517520 None:intergenic 40.0%
! AGGTGTCTAGAAGAGAGTAT+AGG - chr7_3:2517743-2517762 Msa1089180:five_prime_UTR 40.0%
TCAAATTCCATGCCCACATA+TGG + chr7_3:2517801-2517820 None:intergenic 40.0%
!! AATTTGATTCTGAAGCTGCC+AGG - chr7_3:2517814-2517833 Msa1089180:intron 40.0%
GTACTCCCTCAAGCTTATAA+TGG - chr7_3:2518009-2518028 Msa1089180:intron 40.0%
GAAAGAAGAAAGAAGGACCG+GGG - chr7_3:2513825-2513844 Msa1089180:three_prime_UTR 45.0%
GTAACACTGTACCTGTACCT+AGG - chr7_3:2515201-2515220 Msa1089180:CDS 45.0%
! CTCTTTTGTGACCAATGCCT+AGG + chr7_3:2515221-2515240 None:intergenic 45.0%
GCTCAAAGGAATGGGAATGA+AGG - chr7_3:2515416-2515435 Msa1089180:intron 45.0%
AAAGGAATGGGAATGAAGGG+AGG - chr7_3:2515420-2515439 Msa1089180:intron 45.0%
ATGCCTTTGGACATGTTCGA+TGG - chr7_3:2515606-2515625 Msa1089180:intron 45.0%
TGCCTTTGGACATGTTCGAT+GGG - chr7_3:2515607-2515626 Msa1089180:intron 45.0%
GTGAGGTGGGTAAGTTGTAA+TGG - chr7_3:2515968-2515987 Msa1089180:intron 45.0%
TTTGAAGGAGCTTTGCTCTG+TGG - chr7_3:2516043-2516062 Msa1089180:intron 45.0%
TTGAAGGAGCTTTGCTCTGT+GGG - chr7_3:2516044-2516063 Msa1089180:intron 45.0%
TTCTGTAAGTTGCGGCGATT+TGG - chr7_3:2516161-2516180 Msa1089180:intron 45.0%
TCTGTAAGTTGCGGCGATTT+GGG - chr7_3:2516162-2516181 Msa1089180:intron 45.0%
GGAAAAAACTTGCACAGGAC+AGG + chr7_3:2516502-2516521 None:intergenic 45.0%
GTGCACTGTCAACGTATGAA+AGG + chr7_3:2516523-2516542 None:intergenic 45.0%
CTGCAACTCCATTGCTTCTT+TGG + chr7_3:2516927-2516946 None:intergenic 45.0%
!! TGTGGTAGTGGATTCAGACT+AGG - chr7_3:2517703-2517722 Msa1089180:five_prime_UTR 45.0%
!! GTGGTAGTGGATTCAGACTA+GGG - chr7_3:2517704-2517723 Msa1089180:five_prime_UTR 45.0%
TTAACAGCCATATGTGGGCA+TGG - chr7_3:2517791-2517810 Msa1089180:intron 45.0%
GTTGAACATGCTAGATGGGT+TGG - chr7_3:2517846-2517865 Msa1089180:intron 45.0%
AGAACGTCGACAGTGCATAA+CGG + chr7_3:2517884-2517903 None:intergenic 45.0%
CTTGAACTTGGAATGATGCG+CGG + chr7_3:2518090-2518109 None:intergenic 45.0%
GTTCTTCCTTCTCTTCTCCC+CGG + chr7_3:2513845-2513864 None:intergenic 50.0%
! TTGGGGTTTAGGGTTCGGTT+GGG + chr7_3:2514093-2514112 None:intergenic 50.0%
! ATTGGGGTTTAGGGTTCGGT+TGG + chr7_3:2514094-2514113 None:intergenic 50.0%
TGATGGCAAGCAGTCAACAG+AGG - chr7_3:2514696-2514715 Msa1089180:three_prime_UTR 50.0%
!! GAAAGTGAGAGTGGTGATGG+AGG + chr7_3:2514812-2514831 None:intergenic 50.0%
TGCAGCAGATCCTAAGTTGC+TGG - chr7_3:2515160-2515179 Msa1089180:intron 50.0%
CTGTACCTGTACCTAGGCAT+TGG - chr7_3:2515207-2515226 Msa1089180:CDS 50.0%
TGTGACCAATGCCTAGGTAC+AGG + chr7_3:2515215-2515234 None:intergenic 50.0%
ATCGCGCGATTTGATGCCTT+TGG - chr7_3:2515593-2515612 Msa1089180:intron 50.0%
GACCCATCGAACATGTCCAA+AGG + chr7_3:2515612-2515631 None:intergenic 50.0%
TCATTCCTCCGCAAAGCCTA+TGG + chr7_3:2516708-2516727 None:intergenic 50.0%
TGCTGCCCGACAAAAATTGC+AGG - chr7_3:2517255-2517274 Msa1089180:intron 50.0%
GGATTCAGACTAGGGCAATG+AGG - chr7_3:2517712-2517731 Msa1089180:five_prime_UTR 50.0%
AGGGCAATGAGGCAGATCAT+AGG - chr7_3:2517723-2517742 Msa1089180:five_prime_UTR 50.0%
GTTATGCACTGTCGACGTTC+TGG - chr7_3:2517883-2517902 Msa1089180:intron 50.0%
!! TGTCGACGTTCTGGAATCGA+TGG - chr7_3:2517892-2517911 Msa1089180:intron 50.0%
CTGGAATCGATGGCAGAACA+AGG - chr7_3:2517902-2517921 Msa1089180:intron 50.0%
! TGGGGTTTAGGGTTCGGTTG+GGG + chr7_3:2514092-2514111 None:intergenic 55.0%
AGCTTTGCTCTGTGGGCGTT+AGG - chr7_3:2516051-2516070 Msa1089180:intron 55.0%
CACAGGACAGGCCTGATTTC+AGG + chr7_3:2516490-2516509 None:intergenic 55.0%
ACATGCCATAGGCTTTGCGG+AGG - chr7_3:2516700-2516719 Msa1089180:intron 55.0%
GAAGGACCGGGGAGAAGAGA+AGG - chr7_3:2513836-2513855 Msa1089180:three_prime_UTR 60.0%
! GGGTTCGGTTGGGGAGGAAA+AGG + chr7_3:2514083-2514102 None:intergenic 60.0%
! GGTTTAGGGTTCGGTTGGGG+AGG + chr7_3:2514089-2514108 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 2513811 2518183 2513811 ID=Msa1089180;Name=Msa1089180
chr7_3 mRNA 2513811 2518183 2513811 ID=Msa1089180-mRNA-1;Parent=Msa1089180;Name=Msa1089180-mRNA-1;_AED=0.30;_eAED=0.30;_QI=246|0.6|1|1|0.4|0.5|6|907|98
chr7_3 exon 2513811 2514717 2513811 ID=Msa1089180-mRNA-1:exon:1098;Parent=Msa1089180-mRNA-1
chr7_3 exon 2515167 2515283 2515167 ID=Msa1089180-mRNA-1:exon:1097;Parent=Msa1089180-mRNA-1
chr7_3 exon 2516741 2516848 2516741 ID=Msa1089180-mRNA-1:exon:1096;Parent=Msa1089180-mRNA-1
chr7_3 exon 2517267 2517338 2517267 ID=Msa1089180-mRNA-1:exon:1095;Parent=Msa1089180-mRNA-1
chr7_3 exon 2517664 2517784 2517664 ID=Msa1089180-mRNA-1:exon:1094;Parent=Msa1089180-mRNA-1
chr7_3 exon 2518059 2518183 2518059 ID=Msa1089180-mRNA-1:exon:1093;Parent=Msa1089180-mRNA-1
chr7_3 five_prime_UTR 2518059 2518183 2518059 ID=Msa1089180-mRNA-1:five_prime_utr;Parent=Msa1089180-mRNA-1
chr7_3 five_prime_UTR 2517664 2517784 2517664 ID=Msa1089180-mRNA-1:five_prime_utr;Parent=Msa1089180-mRNA-1
chr7_3 CDS 2517267 2517338 2517267 ID=Msa1089180-mRNA-1:cds;Parent=Msa1089180-mRNA-1
chr7_3 CDS 2516741 2516848 2516741 ID=Msa1089180-mRNA-1:cds;Parent=Msa1089180-mRNA-1
chr7_3 CDS 2515167 2515283 2515167 ID=Msa1089180-mRNA-1:cds;Parent=Msa1089180-mRNA-1
chr7_3 three_prime_UTR 2513811 2514717 2513811 ID=Msa1089180-mRNA-1:three_prime_utr;Parent=Msa1089180-mRNA-1
Gene Sequence

>Msa1089180

ATGGACAATGGATTTGAGGATGGACAAGCAGCTTCTGATATGATGGCAAGCAGTCAACAGAGGAAAAAAAGGGTTTGGGATGCTACTGCAGCAGATCCTAAGTTGCTGGTGTTTTTGAAATCTTATCGTAACACTGTACCTGTACCTAGGCATTGGTCACAAAAGAGAAAATTTTTGCAGGCTTTGCGGAGGAATGATACCGCAGATAAGTTCCAACAAATTACCGAAAAAATTGAAGCTGCATTGAGTGATATTTCATACAACAAACTTGAGATATCAGAGGAATTTCAAGAATAG
Protein sequence

>Msa1089180

MDNGFEDGQAASDMMASSQQRKKRVWDATAADPKLLVFLKSYRNTVPVPRHWSQKRKFLQALRRNDTADKFQQITEKIEAALSDISYNKLEISEEFQE*