AlfalfaGEDB | Msa0118990

M. sativa cultivar zhongmu-4 / Msa0118990

KEGG: K12829
GO: GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904
PFAM: PF04037.16

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0118990	A0A072TYE9	83.019	53	5	1	96	148	360	408	2.07e-19	94.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0075360	Msa0118990	0.801244	9.867089e-49	-8.615850e-47
Msa0114060	Msa0118990	0.803109	4.077749e-49	-8.615850e-47
Msa0118990	Msa0159930	0.802530	5.370403e-49	-8.615850e-47
Msa0118990	Msa0271510	0.813204	2.881611e-51	-8.615850e-47
Msa0118990	Msa0411160	0.814435	1.543125e-51	-8.615850e-47
Msa0118990	Msa0411190	0.815466	9.111451e-52	-8.615850e-47
Msa0118990	Msa0477080	0.810113	1.354581e-50	-8.615850e-47
Msa0118990	Msa0493630	0.827554	1.467353e-54	-8.615850e-47
Msa0118990	Msa0521430	0.808106	3.645143e-50	-8.615850e-47
Msa0118990	Msa0709400	0.818552	1.846919e-52	-8.615850e-47

Showing 1 to 10 of 24 entries

Previous1 2 3Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0118990	MtrunA17_Chr1g0199321	93.023	43	3	65	107	90	132	2.86e-19	83.6
Msa0118990	MtrunA17_Chr2g0282041	92.308	39	3	33	71	164	202	2.03e-18	80.9
Msa0118990	MtrunA17_Chr4g0047751	87.179	39	5	33	71	175	213	1.28e-17	79.0

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0118990	AT4G21660.1	87.179	39	5	33	71	180	218	1.72e-17	79.0
Msa0118990	AT4G21660.2	89.189	37	4	33	69	180	216	4.59e-17	77.4
Msa0118990	AT4G21660.3	91.667	36	3	33	68	180	215	1.85e-16	75.9

Showing 1 to 3 of 3 entries

Previous1Next

Find 47 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAAGAAGAAAGAAGGAC+CGG	0.450148	1_3:-42272363	Msa0118990:five_prime_UTR
AAGAACAATGAAGAGAGAAG+AGG	0.569427	1_3:-42272327	Msa0118990:five_prime_UTR
AATTTGATTCTGAAGCTGCC+AGG	0.538610	1_3:-42268379	Msa0118990:CDS
AATTTGTTGGAACTTATCTG+CGG	0.660064	1_3:+42269464	None:intergenic
ACAAGCAGCTTCTGATATGA+TGG	0.532447	1_3:-42271514	Msa0118990:CDS
ACATGCCACAGGCTTTGCGG+AGG	0.633803	1_3:-42269494	Msa0118990:intron
ACCATCTTCAAGCTAATTGC+AGG	0.379552	1_3:+42271942	None:intergenic
AGAAAGAAGAAAGAAGGACC+GGG	0.557573	1_3:-42272362	Msa0118990:five_prime_UTR
AGAACGTCGACAGTGCATAA+CGG	0.641704	1_3:+42268312	None:intergenic
ATCAGAGGAATTTCAAGAAC+AGG	0.415525	1_3:-42269388	Msa0118990:intron

Showing 1 to 10 of 47 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGAGAAGAAGAGAAAGAAAA+AGG	-	chr1_3:42268350-42268369	Msa0118990:CDS	30.0%
GTAGTAAAATGAGATTGAAG+AGG	-	chr1_3:42268666-42268685	Msa0118990:intron	30.0%
GATTATTCTTGGAGGAAATA+TGG	-	chr1_3:42268740-42268759	Msa0118990:intron	30.0%
ACTTTCACAGTGATTTAGTT+AGG	-	chr1_3:42269276-42269295	Msa0118990:intron	30.0%
GAACTGTTGATGTCTTATAA+TGG	-	chr1_3:42269392-42269411	Msa0118990:CDS	30.0%
CAATGTGTAAAATTGCTCAA+AGG	-	chr1_3:42269850-42269869	Msa0118990:intron	30.0%
TGTAAAATTGCTCAAAGGAA+TGG	-	chr1_3:42269855-42269874	Msa0118990:intron	30.0%
GTAAAATTGCTCAAAGGAAT+GGG	-	chr1_3:42269856-42269875	Msa0118990:intron	30.0%
AAGAGAGAACATAGAAACAA+TGG	+	chr1_3:42270183-42270202	None:intergenic	30.0%
AGAAAAACTGATAACCACAT+TGG	+	chr1_3:42270810-42270829	None:intergenic	30.0%

Showing 1 to 10 of 212 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	42268265	42272400	42268265	ID=Msa0118990;Name=Msa0118990
chr1_3	mRNA	42268265	42272400	42268265	ID=Msa0118990-mRNA-1;Parent=Msa0118990;Name=Msa0118990-mRNA-1;_AED=0.43;_eAED=0.56;_QI=199\|0.4\|0.83\|1\|0.6\|0.66\|6\|0\|157
chr1_3	exon	42268265	42268417	42268265	ID=Msa0118990-mRNA-1:exon:12794;Parent=Msa0118990-mRNA-1
chr1_3	exon	42269389	42269505	42269389	ID=Msa0118990-mRNA-1:exon:12793;Parent=Msa0118990-mRNA-1
chr1_3	exon	42270964	42271071	42270964	ID=Msa0118990-mRNA-1:exon:12792;Parent=Msa0118990-mRNA-1
chr1_3	exon	42271488	42271559	42271488	ID=Msa0118990-mRNA-1:exon:12791;Parent=Msa0118990-mRNA-1
chr1_3	exon	42271904	42271998	42271904	ID=Msa0118990-mRNA-1:exon:12790;Parent=Msa0118990-mRNA-1
chr1_3	exon	42272273	42272400	42272273	ID=Msa0118990-mRNA-1:exon:12789;Parent=Msa0118990-mRNA-1
chr1_3	five_prime_UTR	42272273	42272400	42272273	ID=Msa0118990-mRNA-1:five_prime_utr;Parent=Msa0118990-mRNA-1
chr1_3	five_prime_UTR	42271928	42271998	42271928	ID=Msa0118990-mRNA-1:five_prime_utr;Parent=Msa0118990-mRNA-1
chr1_3	CDS	42271904	42271927	42271904	ID=Msa0118990-mRNA-1:cds;Parent=Msa0118990-mRNA-1
chr1_3	CDS	42271488	42271559	42271488	ID=Msa0118990-mRNA-1:cds;Parent=Msa0118990-mRNA-1
chr1_3	CDS	42270964	42271071	42270964	ID=Msa0118990-mRNA-1:cds;Parent=Msa0118990-mRNA-1
chr1_3	CDS	42269389	42269505	42269389	ID=Msa0118990-mRNA-1:cds;Parent=Msa0118990-mRNA-1
chr1_3	CDS	42268265	42268417	42268265	ID=Msa0118990-mRNA-1:cds;Parent=Msa0118990-mRNA-1

Gene Sequence

>Msa0118990

ATGATTATTCTTGGAGGAAATATGATGGACAATGGATTTGAGGATGGACAAGCAGCTTCTGATATGATGGCAAGCAGTCAACAGAGGAAAAAAAGGGTTTGGGATGCTACTGCAGCATATCCTAAGTTGCTGGTGTTTTTGAAATCTTATCGTAACACTGTACCTGTACCTAGGCATTGGTCACAAAAGAGAAAATTTTTGCAGGCTTTGCGGAGGAATGATACCGCAGATAAGTTCCAACAAATTACCGAAAAAATTGAAGCTGCATTGAGTGATATTTCATACAACAAACTTGAGATATCAGAGGAATTTCAAGAACAGCCATATGTGGGCATGGAATTTGATTCTGAAGCTGCCAGGAAATTTTATGTTGAACATGCTAGATGGGTTGGATTTGTTTTACGCCGTTATGCACTGTCGACGTTCTGGAATCGATGGCAGAACAAGGATTCTCACCAAATAGTTTCCACTTAG

Protein sequence

>Msa0118990

MIILGGNMMDNGFEDGQAASDMMASSQQRKKRVWDATAAYPKLLVFLKSYRNTVPVPRHWSQKRKFLQALRRNDTADKFQQITEKIEAALSDISYNKLEISEEFQEQPYVGMEFDSEAARKFYVEHARWVGFVLRRYALSTFWNRWQNKDSHQIVST*