Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118990 | A0A072TYE9 | 83.019 | 53 | 5 | 1 | 96 | 148 | 360 | 408 | 2.07e-19 | 94.0 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0075360 | Msa0118990 | 0.801244 | 9.867089e-49 | -8.615850e-47 |
| Msa0114060 | Msa0118990 | 0.803109 | 4.077749e-49 | -8.615850e-47 |
| Msa0118990 | Msa0159930 | 0.802530 | 5.370403e-49 | -8.615850e-47 |
| Msa0118990 | Msa0271510 | 0.813204 | 2.881611e-51 | -8.615850e-47 |
| Msa0118990 | Msa0411160 | 0.814435 | 1.543125e-51 | -8.615850e-47 |
| Msa0118990 | Msa0411190 | 0.815466 | 9.111451e-52 | -8.615850e-47 |
| Msa0118990 | Msa0477080 | 0.810113 | 1.354581e-50 | -8.615850e-47 |
| Msa0118990 | Msa0493630 | 0.827554 | 1.467353e-54 | -8.615850e-47 |
| Msa0118990 | Msa0521430 | 0.808106 | 3.645143e-50 | -8.615850e-47 |
| Msa0118990 | Msa0709400 | 0.818552 | 1.846919e-52 | -8.615850e-47 |
| Msa0118990 | Msa0802010 | 0.843814 | 1.111886e-58 | -8.615850e-47 |
| Msa0118990 | Msa0820770 | 0.808069 | 3.711531e-50 | -8.615850e-47 |
| Msa0118990 | Msa0861090 | 0.801167 | 1.022923e-48 | -8.615850e-47 |
| Msa0118990 | Msa0866950 | 0.826423 | 2.735211e-54 | -8.615850e-47 |
| Msa0118990 | Msa1016910 | 0.802246 | 6.145577e-49 | -8.615850e-47 |
| Msa0118990 | Msa1058170 | 0.822365 | 2.463106e-53 | -8.615850e-47 |
| Msa0118990 | Msa1089180 | 0.851845 | 6.806733e-61 | -8.615850e-47 |
| Msa0118990 | Msa1102790 | 0.811520 | 6.720286e-51 | -8.615850e-47 |
| Msa0118990 | Msa1124960 | 0.814891 | 1.222649e-51 | -8.615850e-47 |
| Msa0118990 | Msa1203050 | 0.816328 | 5.853133e-52 | -8.615850e-47 |
| Msa0118990 | Msa1244720 | -0.825606 | 4.277962e-54 | -8.615850e-47 |
| Msa0118990 | Msa1255330 | 0.810337 | 1.212274e-50 | -8.615850e-47 |
| Msa0118990 | Msa1295950 | 0.825890 | 3.661931e-54 | -8.615850e-47 |
| Msa0118990 | Msa1335540 | 0.830177 | 3.400358e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118990 | MtrunA17_Chr1g0199321 | 93.023 | 43 | 3 | 0 | 65 | 107 | 90 | 132 | 2.86e-19 | 83.6 |
| Msa0118990 | MtrunA17_Chr2g0282041 | 92.308 | 39 | 3 | 0 | 33 | 71 | 164 | 202 | 2.03e-18 | 80.9 |
| Msa0118990 | MtrunA17_Chr4g0047751 | 87.179 | 39 | 5 | 0 | 33 | 71 | 175 | 213 | 1.28e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118990 | AT4G21660.1 | 87.179 | 39 | 5 | 0 | 33 | 71 | 180 | 218 | 1.72e-17 | 79.0 |
| Msa0118990 | AT4G21660.2 | 89.189 | 37 | 4 | 0 | 33 | 69 | 180 | 216 | 4.59e-17 | 77.4 |
| Msa0118990 | AT4G21660.3 | 91.667 | 36 | 3 | 0 | 33 | 68 | 180 | 215 | 1.85e-16 | 75.9 |
Find 47 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAAGAAGAGAAAGAAAA+AGG | 0.205812 | 1_3:-42272293 | Msa0118990:five_prime_UTR |
| TTAACTAAGTGGAAACTATT+TGG | 0.213882 | 1_3:+42268261 | None:intergenic |
| TGAGATTGAAGAGGGTTGTT+AGG | 0.274491 | 1_3:-42271968 | Msa0118990:five_prime_UTR |
| TTCCACCAGATGATTATTCT+TGG | 0.308847 | 1_3:-42271914 | Msa0118990:exon |
| GATTATTCTTGGAGGAAATA+TGG | 0.321289 | 1_3:-42271903 | Msa0118990:intron |
| TTTATGTTGAACATGCTAGA+TGG | 0.339823 | 1_3:-42268352 | Msa0118990:CDS |
| GTTATGCACTGTCGACGTTC+TGG | 0.366066 | 1_3:-42268310 | Msa0118990:CDS |
| ACCATCTTCAAGCTAATTGC+AGG | 0.379552 | 1_3:+42271942 | None:intergenic |
| ATCAGAGGAATTTCAAGAAC+AGG | 0.415525 | 1_3:-42269388 | Msa0118990:intron |
| GAGATTGAAGAGGGTTGTTA+GGG | 0.422799 | 1_3:-42271967 | Msa0118990:five_prime_UTR |
| ATGTTCAACATAAAATTTCC+TGG | 0.426145 | 1_3:+42268361 | None:intergenic |
| TGCAGCATATCCTAAGTTGC+TGG | 0.426178 | 1_3:-42271035 | Msa0118990:CDS |
| CAATGAAGAGAGAAGAGGAT+TGG | 0.428871 | 1_3:-42272322 | Msa0118990:five_prime_UTR |
| TTAGATGGACAATGGATTTG+AGG | 0.430824 | 1_3:-42271541 | Msa0118990:intron |
| TCAAATTCCATGCCCACATA+TGG | 0.442928 | 1_3:+42268395 | None:intergenic |
| AAGAAAGAAGAAAGAAGGAC+CGG | 0.450148 | 1_3:-42272363 | Msa0118990:five_prime_UTR |
| GACAGAAGAAAGAAGAAAGA+AGG | 0.451806 | 1_3:-42272368 | Msa0118990:five_prime_UTR |
| TTGAAAATTTAGATGGACAA+TGG | 0.453902 | 1_3:-42271549 | Msa0118990:intron |
| TTTACATGCCACAGGCTTTG+CGG | 0.456224 | 1_3:-42269497 | Msa0118990:intron |
| TCCTGCAATTAGCTTGAAGA+TGG | 0.462152 | 1_3:-42271943 | Msa0118990:five_prime_UTR |
| GAAGGACCGGGGAGAAGAGA+AGG | 0.471101 | 1_3:-42272350 | Msa0118990:five_prime_UTR |
| GTTGAACATGCTAGATGGGT+TGG | 0.475912 | 1_3:-42268347 | Msa0118990:CDS |
| CACCAGATGATTATTCTTGG+AGG | 0.491094 | 1_3:-42271911 | Msa0118990:exon |
| GTTCTTCCTTCTCTTCTCCC+CGG | 0.494828 | 1_3:+42272344 | None:intergenic |
| TTCCTCCAAGAATAATCATC+TGG | 0.495254 | 1_3:+42271909 | None:intergenic |
| CTAAGATCTACTTAACTAAG+TGG | 0.528930 | 1_3:+42268250 | None:intergenic |
| ACAAGCAGCTTCTGATATGA+TGG | 0.532447 | 1_3:-42271514 | Msa0118990:CDS |
| AATTTGATTCTGAAGCTGCC+AGG | 0.538610 | 1_3:-42268379 | Msa0118990:CDS |
| TGTGACCAATGCCTAGGTAC+AGG | 0.544976 | 1_3:+42270983 | None:intergenic |
| TTATGTTGAACATGCTAGAT+GGG | 0.554489 | 1_3:-42268351 | Msa0118990:CDS |
| ATGGACAATGGATTTGAGGA+TGG | 0.554723 | 1_3:-42271537 | Msa0118990:CDS |
| TAGTAAAATGAGATTGAAGA+GGG | 0.556603 | 1_3:-42271976 | Msa0118990:five_prime_UTR |
| AGAAAGAAGAAAGAAGGACC+GGG | 0.557573 | 1_3:-42272362 | Msa0118990:five_prime_UTR |
| AAGAACAATGAAGAGAGAAG+AGG | 0.569427 | 1_3:-42272327 | Msa0118990:five_prime_UTR |
| GTAGTAAAATGAGATTGAAG+AGG | 0.570122 | 1_3:-42271977 | Msa0118990:five_prime_UTR |
| CTGGAATCGATGGCAGAACA+AGG | 0.571906 | 1_3:-42268291 | Msa0118990:CDS |
| CTCCAAGAATAATCATCTGG+TGG | 0.575066 | 1_3:+42271912 | None:intergenic |
| TTAACAGCCATATGTGGGCA+TGG | 0.586632 | 1_3:-42268402 | Msa0118990:intron |
| TGTCGACGTTCTGGAATCGA+TGG | 0.593224 | 1_3:-42268301 | Msa0118990:CDS |
| CTGTACCTGTACCTAGGCAT+TGG | 0.613828 | 1_3:-42270988 | Msa0118990:CDS |
| GAAAGAAGAAAGAAGGACCG+GGG | 0.622254 | 1_3:-42272361 | Msa0118990:five_prime_UTR |
| ACATGCCACAGGCTTTGCGG+AGG | 0.633803 | 1_3:-42269494 | Msa0118990:intron |
| AGAACGTCGACAGTGCATAA+CGG | 0.641704 | 1_3:+42268312 | None:intergenic |
| GTAACACTGTACCTGTACCT+AGG | 0.642872 | 1_3:-42270994 | Msa0118990:CDS |
| CAACAAACTTGAGATATCAG+AGG | 0.659687 | 1_3:-42269403 | Msa0118990:CDS |
| AATTTGTTGGAACTTATCTG+CGG | 0.660064 | 1_3:+42269464 | None:intergenic |
| TGATGGCAAGCAGTCAACAG+AGG | 0.701292 | 1_3:-42271497 | Msa0118990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTACAGAATTTTTTT+TGG | - | chr1_3:42268403-42268422 | Msa0118990:intron | 10.0% |
| !! | TGACAAAAAAATATAAAATT+GGG | + | chr1_3:42268568-42268587 | None:intergenic | 10.0% |
| !! | TTGACAAAAAAATATAAAAT+TGG | + | chr1_3:42268569-42268588 | None:intergenic | 10.0% |
| !! | AATCAAAATAACATAAAAAA+GGG | + | chr1_3:42269454-42269473 | None:intergenic | 10.0% |
| !! | AAATCAAAATAACATAAAAA+AGG | + | chr1_3:42269455-42269474 | None:intergenic | 10.0% |
| !! | GACAAAAAAATATAAAATTG+GGG | + | chr1_3:42268567-42268586 | None:intergenic | 15.0% |
| !! | CATACAACAAATAAATTAAA+AGG | + | chr1_3:42268598-42268617 | None:intergenic | 15.0% |
| !! | TGTAAATAACAAATAAGTAA+TGG | + | chr1_3:42269062-42269081 | None:intergenic | 15.0% |
| !!! | CATCTAAATTTTCAATAAAA+GGG | + | chr1_3:42269089-42269108 | None:intergenic | 15.0% |
| !! | TTAAAATTAATGTCAAAGAA+AGG | + | chr1_3:42271425-42271444 | None:intergenic | 15.0% |
| !!! | TTCTTTGACATTAATTTTAA+TGG | - | chr1_3:42271425-42271444 | Msa0118990:intron | 15.0% |
| !!! | TTACAGAATTTTTTTTGGTT+AGG | - | chr1_3:42268408-42268427 | Msa0118990:intron | 20.0% |
| !!! | TACAGAATTTTTTTTGGTTA+GGG | - | chr1_3:42268409-42268428 | Msa0118990:intron | 20.0% |
| !! | AAATATAAAATTGGGGTTTA+GGG | + | chr1_3:42268560-42268579 | None:intergenic | 20.0% |
| !! | AAAATATAAAATTGGGGTTT+AGG | + | chr1_3:42268561-42268580 | None:intergenic | 20.0% |
| !!! | ATTTTTCTGATATTCTGAAT+TGG | - | chr1_3:42268634-42268653 | Msa0118990:intron | 20.0% |
| !!! | TTTTTCTGATATTCTGAATT+GGG | - | chr1_3:42268635-42268654 | Msa0118990:intron | 20.0% |
| !!! | TGTATCTTTGATTTTAATTG+AGG | - | chr1_3:42268807-42268826 | Msa0118990:intron | 20.0% |
| !!! | GTATCTTTGATTTTAATTGA+GGG | - | chr1_3:42268808-42268827 | Msa0118990:intron | 20.0% |
| !!! | GAAGTATCTTTTGATTTTTT+TGG | - | chr1_3:42268969-42268988 | Msa0118990:intron | 20.0% |
| !!! | CCATCTAAATTTTCAATAAA+AGG | + | chr1_3:42269090-42269109 | None:intergenic | 20.0% |
| !!! | CCTTTTATTGAAAATTTAGA+TGG | - | chr1_3:42269087-42269106 | Msa0118990:intron | 20.0% |
| !!! | TTTGCTATAATTTCATTTTC+AGG | - | chr1_3:42269572-42269591 | Msa0118990:intron | 20.0% |
| !!! | TATAATTTCATTTTCAGGTT+TGG | - | chr1_3:42269577-42269596 | Msa0118990:intron | 20.0% |
| !!! | ATAATTTCATTTTCAGGTTT+GGG | - | chr1_3:42269578-42269597 | Msa0118990:intron | 20.0% |
| !!! | CAGATTTATTGATTATTCAA+TGG | - | chr1_3:42270098-42270117 | Msa0118990:intron | 20.0% |
| !!! | TGATGATGTATTAAATGAAA+AGG | - | chr1_3:42270353-42270372 | Msa0118990:intron | 20.0% |
| !! | AACTTACAGAATATAGAAAA+GGG | + | chr1_3:42270600-42270619 | None:intergenic | 20.0% |
| !!! | TCTTTTCGAAATTAAACTTT+AGG | + | chr1_3:42270902-42270921 | None:intergenic | 20.0% |
| !!! | TTTATTTCTACATGATTTCT+TGG | - | chr1_3:42271498-42271517 | Msa0118990:CDS | 20.0% |
| !!! | GTTTGATTTCTAAGTATAAT+TGG | - | chr1_3:42271821-42271840 | Msa0118990:intron | 20.0% |
| !!! | TATAATTGGTTTGTTTACTT+GGG | - | chr1_3:42271835-42271854 | Msa0118990:intron | 20.0% |
| !!! | ATTACATTTTTGAATAGTCA+TGG | + | chr1_3:42272088-42272107 | None:intergenic | 20.0% |
| !!! | GGATTGAGATTTTTAATTCA+AGG | - | chr1_3:42268371-42268390 | Msa0118990:CDS | 25.0% |
| !!! | TTTTGTTTTGTTGAAGTTGT+TGG | - | chr1_3:42268483-42268502 | Msa0118990:intron | 25.0% |
| ! | TAGTAAAATGAGATTGAAGA+GGG | - | chr1_3:42268667-42268686 | Msa0118990:intron | 25.0% |
| !!! | CAAATTTTTTCACTTCTTTG+TGG | + | chr1_3:42268901-42268920 | None:intergenic | 25.0% |
| ! | ATTTGAGAGAGAAGAAATAA+TGG | - | chr1_3:42268916-42268935 | Msa0118990:intron | 25.0% |
| ! | TTTGAGAGAGAAGAAATAAT+GGG | - | chr1_3:42268917-42268936 | Msa0118990:intron | 25.0% |
| !! | TTAGTCTGAGATAGAAATAA+TGG | - | chr1_3:42268941-42268960 | Msa0118990:intron | 25.0% |
| !! | TAGTCTGAGATAGAAATAAT+GGG | - | chr1_3:42268942-42268961 | Msa0118990:intron | 25.0% |
| ! | TTGAAAATTTAGATGGACAA+TGG | - | chr1_3:42269094-42269113 | Msa0118990:intron | 25.0% |
| ! | TAGGAACTGAAAACTAAATT+TGG | - | chr1_3:42269295-42269314 | Msa0118990:intron | 25.0% |
| ! | TAACATAAAAAAGGGTAACT+TGG | + | chr1_3:42269446-42269465 | None:intergenic | 25.0% |
| !! | ACAAAAGAGAAAATTTTTGC+AGG | - | chr1_3:42269680-42269699 | Msa0118990:intron | 25.0% |
| ! | GTAATTGATCTACTAACAAT+TGG | - | chr1_3:42269907-42269926 | Msa0118990:intron | 25.0% |
| ! | CAGAGGAAAAATAATAACAT+AGG | + | chr1_3:42269949-42269968 | None:intergenic | 25.0% |
| !! | CTTTAAAAACAAAAAGTCAG+AGG | + | chr1_3:42269966-42269985 | None:intergenic | 25.0% |
| !! | TAAATCTGAGATTTAAGAAG+AGG | + | chr1_3:42270086-42270105 | None:intergenic | 25.0% |
| !! | CAATAATTTTTCGTAGGATA+TGG | - | chr1_3:42270213-42270232 | Msa0118990:intron | 25.0% |
| ! | AATTGAAAGATAACAGCAAA+AGG | + | chr1_3:42270533-42270552 | None:intergenic | 25.0% |
| ! | GAATTAAAATGCACAAATAG+TGG | + | chr1_3:42270578-42270597 | None:intergenic | 25.0% |
| ! | CAACTTACAGAATATAGAAA+AGG | + | chr1_3:42270601-42270620 | None:intergenic | 25.0% |
| ! | TTTCTATATTCTGTAAGTTG+CGG | - | chr1_3:42270601-42270620 | Msa0118990:intron | 25.0% |
| ! | CATTGAATCATTGAATCTAA+AGG | - | chr1_3:42270752-42270771 | Msa0118990:intron | 25.0% |
| !!! | ACTAGCTGAATATTTTAATG+TGG | - | chr1_3:42270990-42271009 | Msa0118990:CDS | 25.0% |
| ! | AATTGACTAAGATACATGTT+TGG | + | chr1_3:42271097-42271116 | None:intergenic | 25.0% |
| !!! | CAATTTTTTCGGTAATTTGT+TGG | + | chr1_3:42271195-42271214 | None:intergenic | 25.0% |
| ! | CTACATCAAAACTTAAAGAA+AGG | + | chr1_3:42271467-42271486 | None:intergenic | 25.0% |
| !!! | GTATAATTGGTTTGTTTACT+TGG | - | chr1_3:42271834-42271853 | Msa0118990:intron | 25.0% |
| ! | ATCTTACATTCTTGAATTTG+TGG | - | chr1_3:42271903-42271922 | Msa0118990:intron | 25.0% |
| ! | CTGTACAATCTTATACATAT+AGG | - | chr1_3:42271988-42272007 | Msa0118990:intron | 25.0% |
| !! | TATAGGCTATTAGTAGTTTT+TGG | - | chr1_3:42272005-42272024 | Msa0118990:intron | 25.0% |
| ! | ATGTTCAACATAAAATTTCC+TGG | + | chr1_3:42272285-42272304 | None:intergenic | 25.0% |
| TGAGAAGAAGAGAAAGAAAA+AGG | - | chr1_3:42268350-42268369 | Msa0118990:CDS | 30.0% | |
| GTAGTAAAATGAGATTGAAG+AGG | - | chr1_3:42268666-42268685 | Msa0118990:intron | 30.0% | |
| GATTATTCTTGGAGGAAATA+TGG | - | chr1_3:42268740-42268759 | Msa0118990:intron | 30.0% | |
| !!! | TTTGATTTTAATTGAGGGTC+TGG | - | chr1_3:42268813-42268832 | Msa0118990:intron | 30.0% |
| ACTTTCACAGTGATTTAGTT+AGG | - | chr1_3:42269276-42269295 | Msa0118990:intron | 30.0% | |
| GAACTGTTGATGTCTTATAA+TGG | - | chr1_3:42269392-42269411 | Msa0118990:CDS | 30.0% | |
| CAATGTGTAAAATTGCTCAA+AGG | - | chr1_3:42269850-42269869 | Msa0118990:intron | 30.0% | |
| TGTAAAATTGCTCAAAGGAA+TGG | - | chr1_3:42269855-42269874 | Msa0118990:intron | 30.0% | |
| GTAAAATTGCTCAAAGGAAT+GGG | - | chr1_3:42269856-42269875 | Msa0118990:intron | 30.0% | |
| AAGAGAGAACATAGAAACAA+TGG | + | chr1_3:42270183-42270202 | None:intergenic | 30.0% | |
| ! | GCAACACAATAATTTTTCGT+AGG | - | chr1_3:42270207-42270226 | Msa0118990:intron | 30.0% |
| AGAAAAACTGATAACCACAT+TGG | + | chr1_3:42270810-42270829 | None:intergenic | 30.0% | |
| TGTATTCCTATGAACTGAAT+AGG | - | chr1_3:42270848-42270867 | Msa0118990:intron | 30.0% | |
| AACCTATGAACTGAATAGAA+CGG | - | chr1_3:42270873-42270892 | Msa0118990:intron | 30.0% | |
| ! | AAAAGTGTATTCCTGAAATC+AGG | - | chr1_3:42270925-42270944 | Msa0118990:intron | 30.0% |
| !! | AATTTGTTGGAACTTATCTG+CGG | + | chr1_3:42271182-42271201 | None:intergenic | 30.0% |
| !!! | CAATGCAGCTTCAATTTTTT+CGG | + | chr1_3:42271206-42271225 | None:intergenic | 30.0% |
| TTAATGTCAAAGAAAGGTCA+AGG | + | chr1_3:42271419-42271438 | None:intergenic | 30.0% | |
| AAAAGATGGTAACTAAGAAG+AGG | - | chr1_3:42271737-42271756 | Msa0118990:intron | 30.0% | |
| GTTTGTTTACTTGGGTTAAT+AGG | - | chr1_3:42271843-42271862 | Msa0118990:intron | 30.0% | |
| ! | TGGCACTATTATAGTTTTTG+AGG | - | chr1_3:42271964-42271983 | Msa0118990:five_prime_UTR | 30.0% |
| !!! | TTTGTTTTAACAGCCATATG+TGG | - | chr1_3:42272235-42272254 | Msa0118990:intron | 30.0% |
| !!! | TTGTTTTAACAGCCATATGT+GGG | - | chr1_3:42272236-42272255 | Msa0118990:intron | 30.0% |
| TTTATGTTGAACATGCTAGA+TGG | - | chr1_3:42272291-42272310 | Msa0118990:five_prime_UTR | 30.0% | |
| TTATGTTGAACATGCTAGAT+GGG | - | chr1_3:42272292-42272311 | Msa0118990:five_prime_UTR | 30.0% | |
| GACAGAAGAAAGAAGAAAGA+AGG | - | chr1_3:42268275-42268294 | Msa0118990:CDS | 35.0% | |
| AAGAAAGAAGAAAGAAGGAC+CGG | - | chr1_3:42268280-42268299 | Msa0118990:CDS | 35.0% | |
| AAGAACAATGAAGAGAGAAG+AGG | - | chr1_3:42268316-42268335 | Msa0118990:CDS | 35.0% | |
| ! | TAAAATTGGGGTTTAGGGTT+CGG | + | chr1_3:42268555-42268574 | None:intergenic | 35.0% |
| TTCCACCAGATGATTATTCT+TGG | - | chr1_3:42268729-42268748 | Msa0118990:intron | 35.0% | |
| TTCCTCCAAGAATAATCATC+TGG | + | chr1_3:42268737-42268756 | None:intergenic | 35.0% | |
| ! | TTAGATGGACAATGGATTTG+AGG | - | chr1_3:42269102-42269121 | Msa0118990:intron | 35.0% |
| CAGTCAACAGAGGAAAAAAA+GGG | - | chr1_3:42269156-42269175 | Msa0118990:intron | 35.0% | |
| ATCAACAGTTCAGTCATTGA+TGG | + | chr1_3:42269383-42269402 | None:intergenic | 35.0% | |
| AGCTACAAAGAATGCAAGTT+TGG | + | chr1_3:42269543-42269562 | None:intergenic | 35.0% | |
| TTCAAAAACACCAGCAACTT+AGG | + | chr1_3:42269621-42269640 | None:intergenic | 35.0% | |
| AAACAAAAGCAGTGTACTTC+AGG | + | chr1_3:42269823-42269842 | None:intergenic | 35.0% | |
| TGATCTACTAACAATTGGTG+AGG | - | chr1_3:42269912-42269931 | Msa0118990:intron | 35.0% | |
| CATGTCTTAACACTTGCAAT+AGG | - | chr1_3:42270140-42270159 | Msa0118990:intron | 35.0% | |
| TCATTGACAATGCTTAAGTG+AGG | - | chr1_3:42270399-42270418 | Msa0118990:intron | 35.0% | |
| AACACTCTTTCTTTGCCTAA+TGG | + | chr1_3:42270464-42270483 | None:intergenic | 35.0% | |
| ! | AGAGTGTTCTCTTTCTTTGA+AGG | - | chr1_3:42270476-42270495 | Msa0118990:intron | 35.0% |
| TGAACACACACTTCAAATTC+AGG | + | chr1_3:42270663-42270682 | None:intergenic | 35.0% | |
| TGATTCAATGAAAGTCAAGC+AGG | + | chr1_3:42270742-42270761 | None:intergenic | 35.0% | |
| ! | GGTTTTCCTATTCAGTTCAT+AGG | + | chr1_3:42270857-42270876 | None:intergenic | 35.0% |
| ATCCGTTCTATTCAGTTCAT+AGG | + | chr1_3:42270878-42270897 | None:intergenic | 35.0% | |
| TGAAAGGAAAAAACTTGCAC+AGG | + | chr1_3:42270956-42270975 | None:intergenic | 35.0% | |
| TTCAGATGCTATATGCTTTC+TGG | - | chr1_3:42271057-42271076 | Msa0118990:intron | 35.0% | |
| !! | ATGCTATATGCTTTCTGGTT+CGG | - | chr1_3:42271062-42271081 | Msa0118990:intron | 35.0% |
| CAACAAACTTGAGATATCAG+AGG | - | chr1_3:42271240-42271259 | Msa0118990:intron | 35.0% | |
| ATCAGAGGAATTTCAAGAAC+AGG | - | chr1_3:42271255-42271274 | Msa0118990:intron | 35.0% | |
| AAAACGTAGTTAGGAGTAAG+GGG | + | chr1_3:42271307-42271326 | None:intergenic | 35.0% | |
| CAAAACGTAGTTAGGAGTAA+GGG | + | chr1_3:42271308-42271327 | None:intergenic | 35.0% | |
| TCAAAACGTAGTTAGGAGTA+AGG | + | chr1_3:42271309-42271328 | None:intergenic | 35.0% | |
| AGACTCTTCAAAACGTAGTT+AGG | + | chr1_3:42271316-42271335 | None:intergenic | 35.0% | |
| !!! | TACGTTTTGAAGAGTCTGAT+TGG | - | chr1_3:42271319-42271338 | Msa0118990:intron | 35.0% |
| !! | TGAAGAGTCTGATTGGTTTA+TGG | - | chr1_3:42271326-42271345 | Msa0118990:intron | 35.0% |
| TTGAACTACCAAAGAAGCAA+GGG | - | chr1_3:42271365-42271384 | Msa0118990:intron | 35.0% | |
| ! | TCAAACCTGCAATTTTTGTC+GGG | + | chr1_3:42271713-42271732 | None:intergenic | 35.0% |
| ! | CTCAAACCTGCAATTTTTGT+CGG | + | chr1_3:42271714-42271733 | None:intergenic | 35.0% |
| AACTAAGAAGAGGAAGAAGA+TGG | - | chr1_3:42271747-42271766 | Msa0118990:intron | 35.0% | |
| AAGATGGAGTTGTCAAAACA+TGG | - | chr1_3:42271763-42271782 | Msa0118990:intron | 35.0% | |
| !! | AGGCTATTAGTAGTTTTTGG+TGG | - | chr1_3:42272008-42272027 | Msa0118990:intron | 35.0% |
| TCTGCACAAATTGTATCATC+AGG | + | chr1_3:42272120-42272139 | None:intergenic | 35.0% | |
| GCAGAAGTTTATAGATTCTG+TGG | - | chr1_3:42272135-42272154 | Msa0118990:intron | 35.0% | |
| GTTTATAGATTCTGTGGTAG+TGG | - | chr1_3:42272141-42272160 | Msa0118990:intron | 35.0% | |
| ! | GAGAGTACAGGTATATTTGA+TGG | - | chr1_3:42272205-42272224 | Msa0118990:intron | 35.0% |
| AGAAAGAAGAAAGAAGGACC+GGG | - | chr1_3:42268281-42268300 | Msa0118990:CDS | 40.0% | |
| CAATGAAGAGAGAAGAGGAT+TGG | - | chr1_3:42268321-42268340 | Msa0118990:CDS | 40.0% | |
| TGAGATTGAAGAGGGTTGTT+AGG | - | chr1_3:42268675-42268694 | Msa0118990:intron | 40.0% | |
| GAGATTGAAGAGGGTTGTTA+GGG | - | chr1_3:42268676-42268695 | Msa0118990:intron | 40.0% | |
| ! | TCCTGCAATTAGCTTGAAGA+TGG | - | chr1_3:42268700-42268719 | Msa0118990:intron | 40.0% |
| ACCATCTTCAAGCTAATTGC+AGG | + | chr1_3:42268704-42268723 | None:intergenic | 40.0% | |
| CTCCAAGAATAATCATCTGG+TGG | + | chr1_3:42268734-42268753 | None:intergenic | 40.0% | |
| CACCAGATGATTATTCTTGG+AGG | - | chr1_3:42268732-42268751 | Msa0118990:intron | 40.0% | |
| !!! | AGGGTCTGGTCTTTTGATTT+TGG | - | chr1_3:42268827-42268846 | Msa0118990:intron | 40.0% |
| !!! | GGGTCTGGTCTTTTGATTTT+GGG | - | chr1_3:42268828-42268847 | Msa0118990:intron | 40.0% |
| ! | ATGGACAATGGATTTGAGGA+TGG | - | chr1_3:42269106-42269125 | Msa0118990:intron | 40.0% |
| ACAAGCAGCTTCTGATATGA+TGG | - | chr1_3:42269129-42269148 | Msa0118990:intron | 40.0% | |
| GCAGTCAACAGAGGAAAAAA+AGG | - | chr1_3:42269155-42269174 | Msa0118990:intron | 40.0% | |
| AATCACTGTGAAAGTGAGAG+TGG | + | chr1_3:42269271-42269290 | None:intergenic | 40.0% | |
| AACAGTTCAGTCATTGATGG+AGG | + | chr1_3:42269380-42269399 | None:intergenic | 40.0% | |
| CAGCTTATTCAGATCAGACT+CGG | + | chr1_3:42269779-42269798 | None:intergenic | 40.0% | |
| CTCAAAGGAATGGGAATGAA+GGG | - | chr1_3:42269865-42269884 | Msa0118990:intron | 40.0% | |
| !! | AACACTTGCTATAGAGAGCA+TGG | - | chr1_3:42270248-42270267 | Msa0118990:intron | 40.0% |
| ! | TAGAGAGCATGGTACTCATT+AGG | - | chr1_3:42270259-42270278 | Msa0118990:intron | 40.0% |
| TTGACAATGCTTAAGTGAGG+TGG | - | chr1_3:42270402-42270421 | Msa0118990:intron | 40.0% | |
| TGACAATGCTTAAGTGAGGT+GGG | - | chr1_3:42270403-42270422 | Msa0118990:intron | 40.0% | |
| TGAGGTGGGTAAGTTGTAAT+GGG | - | chr1_3:42270417-42270436 | Msa0118990:intron | 40.0% | |
| GGGAATACAAGATTATTGCG+AGG | - | chr1_3:42270437-42270456 | Msa0118990:intron | 40.0% | |
| AGATTATTGCGAGGACCATT+AGG | - | chr1_3:42270446-42270465 | Msa0118990:intron | 40.0% | |
| TTCTTCATGCATGACCAATG+TGG | - | chr1_3:42270793-42270812 | Msa0118990:intron | 40.0% | |
| !! | ATTGTTGCTTTACATGCCAC+AGG | - | chr1_3:42271138-42271157 | Msa0118990:intron | 40.0% |
| GGTTTATGGTGTGATAGCAA+TGG | - | chr1_3:42271340-42271359 | Msa0118990:intron | 40.0% | |
| GTTGAACTACCAAAGAAGCA+AGG | - | chr1_3:42271364-42271383 | Msa0118990:intron | 40.0% | |
| ! | GCAGGTTTGAGTTCAAAAGA+TGG | - | chr1_3:42271723-42271742 | Msa0118990:intron | 40.0% |
| GTTGCCTCTTAATCTTGCTT+TGG | - | chr1_3:42271944-42271963 | Msa0118990:five_prime_UTR | 40.0% | |
| AGTGCCAAAGCAAGATTAAG+AGG | + | chr1_3:42271951-42271970 | None:intergenic | 40.0% | |
| TCAAATTCCATGCCCACATA+TGG | + | chr1_3:42272251-42272270 | None:intergenic | 40.0% | |
| !! | AATTTGATTCTGAAGCTGCC+AGG | - | chr1_3:42272264-42272283 | Msa0118990:intron | 40.0% |
| GAAAGAAGAAAGAAGGACCG+GGG | - | chr1_3:42268282-42268301 | Msa0118990:CDS | 45.0% | |
| TGTGAAAGTGAGAGTGGTGA+TGG | + | chr1_3:42269265-42269284 | None:intergenic | 45.0% | |
| GTTCAGTCATTGATGGAGGT+CGG | + | chr1_3:42269376-42269395 | None:intergenic | 45.0% | |
| TGCAGCATATCCTAAGTTGC+TGG | - | chr1_3:42269608-42269627 | Msa0118990:intron | 45.0% | |
| GTAACACTGTACCTGTACCT+AGG | - | chr1_3:42269649-42269668 | Msa0118990:intron | 45.0% | |
| ! | CTCTTTTGTGACCAATGCCT+AGG | + | chr1_3:42269669-42269688 | None:intergenic | 45.0% |
| GCTCAAAGGAATGGGAATGA+AGG | - | chr1_3:42269864-42269883 | Msa0118990:intron | 45.0% | |
| AAAGGAATGGGAATGAAGGG+AGG | - | chr1_3:42269868-42269887 | Msa0118990:intron | 45.0% | |
| ATAGCGCGATTTGATGCCTT+TGG | - | chr1_3:42270041-42270060 | Msa0118990:intron | 45.0% | |
| ATGCCTTTGGACATGTTCGA+TGG | - | chr1_3:42270054-42270073 | Msa0118990:intron | 45.0% | |
| TGCCTTTGGACATGTTCGAT+GGG | - | chr1_3:42270055-42270074 | Msa0118990:intron | 45.0% | |
| GTGAGGTGGGTAAGTTGTAA+TGG | - | chr1_3:42270416-42270435 | Msa0118990:intron | 45.0% | |
| TTTGAAGGAGCTTTGCTCTG+TGG | - | chr1_3:42270491-42270510 | Msa0118990:intron | 45.0% | |
| TTGAAGGAGCTTTGCTCTGT+GGG | - | chr1_3:42270492-42270511 | Msa0118990:intron | 45.0% | |
| TTCTGTAAGTTGCGGCGATT+CGG | - | chr1_3:42270609-42270628 | Msa0118990:intron | 45.0% | |
| GGAAAAAACTTGCACAGGAC+AGG | + | chr1_3:42270951-42270970 | None:intergenic | 45.0% | |
| GTGCACTGTCAACGTATGAA+AGG | + | chr1_3:42270972-42270991 | None:intergenic | 45.0% | |
| TTTACATGCCACAGGCTTTG+CGG | - | chr1_3:42271146-42271165 | Msa0118990:intron | 45.0% | |
| !! | TGTGGTAGTGGATTCAGACT+AGG | - | chr1_3:42272153-42272172 | Msa0118990:intron | 45.0% |
| !! | GTGGTAGTGGATTCAGACTA+GGG | - | chr1_3:42272154-42272173 | Msa0118990:intron | 45.0% |
| ! | AGGTGTCTAGAAGAGAGTAC+AGG | - | chr1_3:42272193-42272212 | Msa0118990:intron | 45.0% |
| TTAACAGCCATATGTGGGCA+TGG | - | chr1_3:42272241-42272260 | Msa0118990:intron | 45.0% | |
| GTTGAACATGCTAGATGGGT+TGG | - | chr1_3:42272296-42272315 | Msa0118990:five_prime_UTR | 45.0% | |
| AGAACGTCGACAGTGCATAA+CGG | + | chr1_3:42272334-42272353 | None:intergenic | 45.0% | |
| GTTCTTCCTTCTCTTCTCCC+CGG | + | chr1_3:42268302-42268321 | None:intergenic | 50.0% | |
| ! | TTGGGGTTTAGGGTTCGGTT+GGG | + | chr1_3:42268550-42268569 | None:intergenic | 50.0% |
| ! | ATTGGGGTTTAGGGTTCGGT+TGG | + | chr1_3:42268551-42268570 | None:intergenic | 50.0% |
| TGATGGCAAGCAGTCAACAG+AGG | - | chr1_3:42269146-42269165 | Msa0118990:intron | 50.0% | |
| !! | GAAAGTGAGAGTGGTGATGG+AGG | + | chr1_3:42269262-42269281 | None:intergenic | 50.0% |
| CTGTACCTGTACCTAGGCAT+TGG | - | chr1_3:42269655-42269674 | Msa0118990:intron | 50.0% | |
| TGTGACCAATGCCTAGGTAC+AGG | + | chr1_3:42269663-42269682 | None:intergenic | 50.0% | |
| GACCCATCGAACATGTCCAA+AGG | + | chr1_3:42270060-42270079 | None:intergenic | 50.0% | |
| TCTGTAAGTTGCGGCGATTC+GGG | - | chr1_3:42270610-42270629 | Msa0118990:intron | 50.0% | |
| CTGCAACTCCCTTGCTTCTT+TGG | + | chr1_3:42271376-42271395 | None:intergenic | 50.0% | |
| TGCTGCCCGACAAAAATTGC+AGG | - | chr1_3:42271705-42271724 | Msa0118990:intron | 50.0% | |
| GGATTCAGACTAGGGCAATG+AGG | - | chr1_3:42272162-42272181 | Msa0118990:intron | 50.0% | |
| AGGGCAATGAGGCAGATCAT+AGG | - | chr1_3:42272173-42272192 | Msa0118990:intron | 50.0% | |
| GTTATGCACTGTCGACGTTC+TGG | - | chr1_3:42272333-42272352 | Msa0118990:five_prime_UTR | 50.0% | |
| !! | TGTCGACGTTCTGGAATCGA+TGG | - | chr1_3:42272342-42272361 | Msa0118990:five_prime_UTR | 50.0% |
| CTGGAATCGATGGCAGAACA+AGG | - | chr1_3:42272352-42272371 | Msa0118990:five_prime_UTR | 50.0% | |
| ! | TGGGGTTTAGGGTTCGGTTG+GGG | + | chr1_3:42268549-42268568 | None:intergenic | 55.0% |
| AGCTTTGCTCTGTGGGCGTT+AGG | - | chr1_3:42270499-42270518 | Msa0118990:intron | 55.0% | |
| CACAGGACAGGCCTGATTTC+AGG | + | chr1_3:42270939-42270958 | None:intergenic | 55.0% | |
| TCATTCCTCCGCAAAGCCTG+TGG | + | chr1_3:42271157-42271176 | None:intergenic | 55.0% | |
| GAAGGACCGGGGAGAAGAGA+AGG | - | chr1_3:42268293-42268312 | Msa0118990:CDS | 60.0% | |
| ! | GGGTTCGGTTGGGGAGGAAA+AGG | + | chr1_3:42268540-42268559 | None:intergenic | 60.0% |
| ! | GGTTTAGGGTTCGGTTGGGG+AGG | + | chr1_3:42268546-42268565 | None:intergenic | 60.0% |
| ACATGCCACAGGCTTTGCGG+AGG | - | chr1_3:42271149-42271168 | Msa0118990:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 42268265 | 42272400 | 42268265 | ID=Msa0118990;Name=Msa0118990 |
| chr1_3 | mRNA | 42268265 | 42272400 | 42268265 | ID=Msa0118990-mRNA-1;Parent=Msa0118990;Name=Msa0118990-mRNA-1;_AED=0.43;_eAED=0.56;_QI=199|0.4|0.83|1|0.6|0.66|6|0|157 |
| chr1_3 | exon | 42268265 | 42268417 | 42268265 | ID=Msa0118990-mRNA-1:exon:12794;Parent=Msa0118990-mRNA-1 |
| chr1_3 | exon | 42269389 | 42269505 | 42269389 | ID=Msa0118990-mRNA-1:exon:12793;Parent=Msa0118990-mRNA-1 |
| chr1_3 | exon | 42270964 | 42271071 | 42270964 | ID=Msa0118990-mRNA-1:exon:12792;Parent=Msa0118990-mRNA-1 |
| chr1_3 | exon | 42271488 | 42271559 | 42271488 | ID=Msa0118990-mRNA-1:exon:12791;Parent=Msa0118990-mRNA-1 |
| chr1_3 | exon | 42271904 | 42271998 | 42271904 | ID=Msa0118990-mRNA-1:exon:12790;Parent=Msa0118990-mRNA-1 |
| chr1_3 | exon | 42272273 | 42272400 | 42272273 | ID=Msa0118990-mRNA-1:exon:12789;Parent=Msa0118990-mRNA-1 |
| chr1_3 | five_prime_UTR | 42272273 | 42272400 | 42272273 | ID=Msa0118990-mRNA-1:five_prime_utr;Parent=Msa0118990-mRNA-1 |
| chr1_3 | five_prime_UTR | 42271928 | 42271998 | 42271928 | ID=Msa0118990-mRNA-1:five_prime_utr;Parent=Msa0118990-mRNA-1 |
| chr1_3 | CDS | 42271904 | 42271927 | 42271904 | ID=Msa0118990-mRNA-1:cds;Parent=Msa0118990-mRNA-1 |
| chr1_3 | CDS | 42271488 | 42271559 | 42271488 | ID=Msa0118990-mRNA-1:cds;Parent=Msa0118990-mRNA-1 |
| chr1_3 | CDS | 42270964 | 42271071 | 42270964 | ID=Msa0118990-mRNA-1:cds;Parent=Msa0118990-mRNA-1 |
| chr1_3 | CDS | 42269389 | 42269505 | 42269389 | ID=Msa0118990-mRNA-1:cds;Parent=Msa0118990-mRNA-1 |
| chr1_3 | CDS | 42268265 | 42268417 | 42268265 | ID=Msa0118990-mRNA-1:cds;Parent=Msa0118990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
