AlfalfaGEDB | Msa0271110

M. sativa cultivar zhongmu-4 / Msa0271110

KEGG: K12811
GO: GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360
PFAM: PF00270.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0271110	XP_024632515.1	97.232	1120	22	3	1	1117	1	1114	0.0	2192

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0271110	sp\|Q8H0U8\|RH42_ARATH	70.624	977	241	15	172	1117	205	1166	0.0	1318

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0271110	G7IPH0	97.232	1120	22	3	1	1117	1	1114	0.0	2192

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0036140	Msa0271110	0.806968	6.356639e-50	-8.615850e-47
Msa0068680	Msa0271110	0.809884	1.517651e-50	-8.615850e-47
Msa0116080	Msa0271110	0.815545	8.751413e-52	-8.615850e-47
Msa0188960	Msa0271110	0.983706	1.755016e-158	-8.615850e-47
Msa0220580	Msa0271110	0.818564	1.835472e-52	-8.615850e-47
Msa0230680	Msa0271110	0.805343	1.397254e-49	-8.615850e-47
Msa0271110	Msa0313560	0.829891	3.993077e-55	-8.615850e-47
Msa0271110	Msa0392400	0.821914	3.133655e-53	-8.615850e-47
Msa0271110	Msa0392440	0.804984	1.661151e-49	-8.615850e-47
Msa0271110	Msa0486130	0.806273	8.912280e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0271110	MtrunA17_Chr2g0277821	97.232	1120	22	3	1	1117	1	1114	0.0	2192
Msa0271110	MtrunA17_Chr7g0270131	45.091	550	268	8	355	887	79	611	2.30e-141	445
Msa0271110	MtrunA17_Chr2g0330401	47.100	431	223	3	461	889	49	476	1.49e-133	414
Msa0271110	MtrunA17_Chr6g0449911	43.176	403	222	4	488	888	146	543	1.26e-105	348
Msa0271110	MtrunA17_Chr4g0058591	44.324	370	202	2	462	830	157	523	1.48e-105	341
Msa0271110	MtrunA17_Chr3g0107851	41.320	409	224	4	477	872	83	488	1.70e-102	334
Msa0271110	MtrunA17_Chr4g0076491	40.326	429	232	5	475	883	255	679	3.19e-99	330
Msa0271110	MtrunA17_Chr2g0293631	41.218	427	236	6	466	887	457	873	1.71e-98	338
Msa0271110	MtrunA17_Chr6g0449741	39.627	429	233	6	475	883	217	639	3.35e-96	320
Msa0271110	MtrunA17_Chr5g0409981	43.152	387	208	6	504	883	101	482	7.82e-90	298

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0271110	AT1G20920.4	70.624	977	241	15	172	1117	205	1166	0.0	1318
Msa0271110	AT1G20920.6	70.624	977	241	15	172	1117	205	1166	0.0	1318
Msa0271110	AT1G20920.3	70.624	977	241	15	172	1117	205	1166	0.0	1318
Msa0271110	AT1G20920.7	70.624	977	241	15	172	1117	205	1166	0.0	1318
Msa0271110	AT1G20920.5	70.624	977	241	15	172	1117	205	1166	0.0	1318
Msa0271110	AT1G20920.1	70.624	977	241	15	172	1117	205	1166	0.0	1318
Msa0271110	AT1G20920.2	74.820	834	176	10	312	1117	1	828	0.0	1222
Msa0271110	AT3G09620.1	69.541	916	201	13	221	1117	133	989	0.0	1211
Msa0271110	AT3G09620.2	69.541	916	201	13	221	1117	134	990	0.0	1211
Msa0271110	AT2G47330.1	44.809	549	273	7	353	887	76	608	1.41e-142	448

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Find 393 sgRNAs with CRISPR-Local

Find 489 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGAGGGAGAGGAAGA+GGG	0.463179	2_3:+2420576	Msa0271110:CDS
AAAACAGTGATGATGAGTTG+AGG	0.634017	2_3:+2420854	Msa0271110:CDS
AAAATTATCACATTTATTAT+TGG	0.163016	2_3:+2424912	Msa0271110:three_prime_UTR
AAACAGTGATGATGAGTTGA+GGG	0.563737	2_3:+2420855	Msa0271110:CDS
AAACCTGTTGAAATACAAGT+TGG	0.572024	2_3:+2422461	Msa0271110:CDS
AAACTCTACTTGTTCATTGA+GGG	0.471785	2_3:+2423541	Msa0271110:CDS
AAAGAAATGGACACTTGATG+GGG	0.672554	2_3:+2421200	Msa0271110:CDS
AAAGAAGGGAGAGGGAAAGG+AGG	0.351471	2_3:+2420737	Msa0271110:CDS
AAAGAGGTTGGATGATGAAA+TGG	0.396497	2_3:+2421071	Msa0271110:CDS
AAAGCCCAAGCCAAAGAATA+TGG	0.318550	2_3:+2423106	Msa0271110:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAATGAATGTGCGTTA+CGG	-	chr2_3:2420121-2420140	None:intergenic	30.0%
TTTGTAGGTTAAAGTAATGG+AGG	+	chr2_3:2420315-2420334	Msa0271110:intron	30.0%
GATTAGAGAGAAAGAAAGAA+GGG	+	chr2_3:2420723-2420742	Msa0271110:CDS	30.0%
AACTGGTAAACATACAAGTA+TGG	+	chr2_3:2421245-2421264	Msa0271110:CDS	30.0%
ACTTGAAACCCAAAGATAAA+GGG	+	chr2_3:2421490-2421509	Msa0271110:CDS	30.0%
GTTCAAATAAATCTATTGGC+AGG	+	chr2_3:2421547-2421566	Msa0271110:CDS	30.0%
GTATATAGTCAATCTTTGAG+TGG	-	chr2_3:2421704-2421723	None:intergenic	30.0%
AGATTGACTATATACCATTC+AGG	+	chr2_3:2421709-2421728	Msa0271110:CDS	30.0%
TTTCTATATTGAAGTGAAGG+AGG	+	chr2_3:2421737-2421756	Msa0271110:CDS	30.0%
AACAGATTCACAGTGATATA+AGG	+	chr2_3:2422108-2422127	Msa0271110:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	2419943	2425726	2419943	ID=Msa0271110;Name=Msa0271110
chr2_3	mRNA	2419943	2425726	2419943	ID=Msa0271110-mRNA-1;Parent=Msa0271110;Name=Msa0271110-mRNA-1;_AED=0.05;_eAED=0.05;_QI=172\|1\|1\|1\|0\|0\|6\|1263\|1117
chr2_3	exon	2419943	2420105	2419943	ID=Msa0271110-mRNA-1:exon:1205;Parent=Msa0271110-mRNA-1
chr2_3	exon	2420322	2423687	2420322	ID=Msa0271110-mRNA-1:exon:1206;Parent=Msa0271110-mRNA-1
chr2_3	exon	2424006	2424101	2424006	ID=Msa0271110-mRNA-1:exon:1207;Parent=Msa0271110-mRNA-1
chr2_3	exon	2424325	2424431	2424325	ID=Msa0271110-mRNA-1:exon:1208;Parent=Msa0271110-mRNA-1
chr2_3	exon	2424564	2425416	2424564	ID=Msa0271110-mRNA-1:exon:1209;Parent=Msa0271110-mRNA-1
chr2_3	exon	2425523	2425726	2425523	ID=Msa0271110-mRNA-1:exon:1210;Parent=Msa0271110-mRNA-1
chr2_3	five_prime_UTR	2419943	2420105	2419943	ID=Msa0271110-mRNA-1:five_prime_utr;Parent=Msa0271110-mRNA-1
chr2_3	five_prime_UTR	2420322	2420330	2420322	ID=Msa0271110-mRNA-1:five_prime_utr;Parent=Msa0271110-mRNA-1
chr2_3	CDS	2420331	2423684	2420331	ID=Msa0271110-mRNA-1:cds;Parent=Msa0271110-mRNA-1
chr2_3	three_prime_UTR	2423685	2423687	2423685	ID=Msa0271110-mRNA-1:three_prime_utr;Parent=Msa0271110-mRNA-1
chr2_3	three_prime_UTR	2424006	2424101	2424006	ID=Msa0271110-mRNA-1:three_prime_utr;Parent=Msa0271110-mRNA-1
chr2_3	three_prime_UTR	2424325	2424431	2424325	ID=Msa0271110-mRNA-1:three_prime_utr;Parent=Msa0271110-mRNA-1
chr2_3	three_prime_UTR	2424564	2425416	2424564	ID=Msa0271110-mRNA-1:three_prime_utr;Parent=Msa0271110-mRNA-1
chr2_3	three_prime_UTR	2425523	2425726	2425523	ID=Msa0271110-mRNA-1:three_prime_utr;Parent=Msa0271110-mRNA-1

Gene Sequence

>Msa0271110

ATGGAGGAGGGAAAACATAAATCTAGGAAAGAAGATGCTGATTCTAAGAGGAGTCATCGTAGTGATCGAGATCGTAAGGATCGAAGCAGCGATGGTAGTAGGCACAAGGATAAGAGGGATCGTGAATCTCGAAGGCACGATAGAGAGAAAAGTACTGATTCTGATGAGAAGCATGATAGAGATAGGGAGAAGAGGAGGGAGAGTAAAGAGAAGGAGAAGGCACGTGTACATGATGTCGAACGAGAAAAACAGAGGGAGAGGAAGAGGGAAAGAGAGAGGGAGGAGAAGGAAAAGGAGAGAGTGAGGGAGAAAGAAAGAGAGAGGGAAGAGAAGGAGAAGGAGAGATTGAGGGAGAAGGAAAGAGAGAGGGAGAGAAAGGAGGAGAAGGAGAGGATTAGAGAGAAAGAAAGAAGGGAGAGGGAAAGGAGGGAATATGAGAGAGAGAAGGAAAAGGAGAAAGAAAAAGAGAGAGATCGAGGGAGGAGAGTACGGGAGAGGGAGAAGCATCGTGATGTTAATGGTGAAAACAGTGATGATGAGTTGAGGGAGAGGAATCGGAAGCGGCATAAGAAAGATGACGATGATTACAAGAGGCGAGAGAAGGAAAAGAGTTCGGGAAAGTCAAGTAGGAAAATGGAGGGCGTTGATGGGAGTCCTAGGAGAAAGAGTGATGGAGATGACTCAGATTCTAAAGAGAAAGCGAAGAAACAGACCCGTGAGGAGGAGATGGAAGAGGAACAAAAGAGGTTGGATGATGAAATGGAAAAGCGGAGGAGGAAAGTTCAAGCCTGGCAAGAGCTAAGGAGGTTGGAGGAAGAGGCACAAAGAAAAAAACAAGGTGAAGCAAGTGTTGTTGAACCTGAGTCTGGAAAGAAATGGACACTTGATGGGGAGGAATCTGATGATGAAGATGGAACTGGTAAACATACAAGTATGGATATAGACGAAGACGGTAAACTTGCTGATAATGAACCTACTGATTCAATGGCGGTAGATGTTGACAAGGGAACTGTTGCGTCTGATTTACAGAATGGAGATGCTGGTGCTCCTGCAGAGGATGAAATAGACCCATTGGATGCTTTCATGAATTCTATGGTTCTTCCTGAGGTTGAAAAGCTTAATAATGCTGTTAACTCAGCACCTTCTGATAATGCTTCTGACTTGAAACCCAAAGATAAAGGGGCTGAGAGTAGAAATGGTGGACAATCAAGGAAAGGTTCAAATAAATCTATTGGCAGGATAATTCCTGGTGAAGAGTCTGATTCAGATTATGCAGATCCTGAAGTTGAAGGTGATCCATTAGATGAAGATGACGATGAGTTCATGAAAAGAGTGAAGAAAACAAAAGCTGAAAAGCTTTCTATTGTTGACCACTCAAAGATTGACTATATACCATTCAGGAAGAATTTCTATATTGAAGTGAAGGAGGTTTCAAAGATGACTGTTGAAGAAGTTGCATTTTACAGGAAGCAGTTAGAGTTGAAGATACATGGAAAGGATGTGCCCAAGCCTGTAAAGTCATGGAACCAAACTGGACTCACTAGCAAAATTTTAGACACAATAAAGAAGGCGAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCGTTGCCTGTAATTATGAGTGGTCGAGATTGCATAGGCGTTGCCAAAACTGGATCAGGTAAAACCCTTGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCACCAGTTGTTGTAGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGAGAACTTGTTCAACAGATTCACAGTGATATAAGGAAGTTCACAAAGGTAATGGGTATCAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCTCAACAAATAAGTGAGTTGAAACGTGGTACTGAGATAGTAGTTTGTACTCCAGGTAGGATGATTGACATACTGTGCACCAGTAGTGGAAAAATTACTAACCTGCGTAGAGTAACTTATCTGGTCATGGATGAGGCAGATCGGATGTTTGATATGGGCTTTGAACCTCAAATCACAAGAATTGTTCAGAATATTCGGCCAGATCGTCAAACAGTTCTCTTCTCTGCCACTTTCCCCCGCCAGGTTGAAATTTTGGCTCGCAAGGTTTTGAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGATATAGCACAGTTAGTTGAGGTGAGGCCAGAAAACGAGAGGTTCCTTAGACTCTTGGAACTACTTGGAGAATGGTATGAGAAAGGAAAGATTTTGGTATTTGTCCACTCACAAGATAAATGTGATGCACTGTTCAAGGATCTAATGAAACATGGTTATCCATGTCTCTCTCTTCATGGGGCTAAGGATCAGACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTCTGCAATTTGCTGGTTGCGACAAGTATTGCTGCCAGGGGATTAGATGTTAAGGAGCTCGAATTGGTGATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTGCATCGTGTTGGGCGCACTGGCCGTGCTGGCCGAAAGGGTTGTGCCATCACATTTATTTCTGAAGAAGATGCAAGATATGCACCAGATCTGGTGAAAGCTTTGGAGCTATCTGAGCAGATTGTTCCCGATGATCTGAAATCCCTTGCCGAAGGCTTTATGGCAAAAGTGACTCAAGGACTGGAGCAAGCCCACGGGACTGGTTATGGAGGCACTGGCTTTAAATTTAATGAAGAGGAAGACGAGGTGAGGAGAGCAGCGAAGAAAGCCCAAGCCAAAGAATATGGATTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGATATCTCACAGCACCATACTCCGATCTCTGCAGCCCAACTGATTCCAATTGGTGGGATACCATCTGTTTCAACAGTCTTGCCTGTGATAGGATCTATAGCTACAAACGATGGGGCTACTCGAGCAGCATTAGCTGCTATGAACCTGCAGCAAAACATAGCAAAAATACAATCTGAAGCATTGCCAGAGCATTATGAGGCCGAGTTGGAAATAAATGATTTCCCTCAGAATGCTCGTTGGAAAGTCACACACAAGGAAACTTTGGGCCCCATTTCTGAGTGGACTGGAGCTGCTATTACTACAAGGGGGCAGTTTTTCCCACCTGGCAAAGTCGCAGGGCCTGGGGATCGCAAACTCTACTTGTTCATTGAGGGTCCTAGTGAACAGTCTGTTAAGAGAGCCAAAGCAGAATTGAAACGAGTTTTGGAAGATATCACTCATCAGGCTTTGCAACTACCTGGTGGAACTCAACCTGGCAAATACTCTGTTGTATAA

Protein sequence

>Msa0271110

MEEGKHKSRKEDADSKRSHRSDRDRKDRSSDGSRHKDKRDRESRRHDREKSTDSDEKHDRDREKRRESKEKEKARVHDVEREKQRERKREREREEKEKERVREKEREREEKEKERLREKERERERKEEKERIREKERRERERREYEREKEKEKEKERDRGRRVREREKHRDVNGENSDDELRERNRKRHKKDDDDYKRREKEKSSGKSSRKMEGVDGSPRRKSDGDDSDSKEKAKKQTREEEMEEEQKRLDDEMEKRRRKVQAWQELRRLEEEAQRKKQGEASVVEPESGKKWTLDGEESDDEDGTGKHTSMDIDEDGKLADNEPTDSMAVDVDKGTVASDLQNGDAGAPAEDEIDPLDAFMNSMVLPEVEKLNNAVNSAPSDNASDLKPKDKGAESRNGGQSRKGSNKSIGRIIPGEESDSDYADPEVEGDPLDEDDDEFMKRVKKTKAEKLSIVDHSKIDYIPFRKNFYIEVKEVSKMTVEEVAFYRKQLELKIHGKDVPKPVKSWNQTGLTSKILDTIKKANFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVVVGDGPIGLIMAPTRELVQQIHSDIRKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILVFVHSQDKCDALFKDLMKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQIVPDDLKSLAEGFMAKVTQGLEQAHGTGYGGTGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHHTPISAAQLIPIGGIPSVSTVLPVIGSIATNDGATRAALAAMNLQQNIAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFFPPGKVAGPGDRKLYLFIEGPSEQSVKRAKAELKRVLEDITHQALQLPGGTQPGKYSVV*