AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0618700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0618700 MtrunA17_Chr8g0379911 98.141 269 5 0 1 269 1 269 0.0 530
Msa0618700 MtrunA17_Chr2g0284581 76.119 268 64 0 1 268 1 268 4.53e-151 422
Msa0618700 MtrunA17_Chr8g0379901 73.585 265 70 0 3 267 4 268 8.72e-151 422
Msa0618700 MtrunA17_Chr2g0284591 75.769 260 63 0 7 266 5 264 1.06e-147 414
Msa0618700 MtrunA17_Chr2g0284611 72.075 265 74 0 1 265 1 265 2.89e-140 395
Msa0618700 MtrunA17_Chr2g0284631 64.364 275 91 2 1 268 53 327 1.96e-132 377
Msa0618700 MtrunA17_Chr2g0284601 81.395 215 40 0 54 268 6 220 5.29e-130 367
Msa0618700 MtrunA17_Chr4g0044201 59.914 232 78 2 37 266 34 252 4.58e-99 290
Msa0618700 MtrunA17_Chr5g0435051 54.867 226 101 1 28 253 30 254 2.43e-87 261
Msa0618700 MtrunA17_Chr3g0079421 53.279 244 111 2 28 269 16 258 1.08e-86 259
Msa0618700 MtrunA17_Chr7g0217331 49.402 251 125 2 1 251 1 249 1.43e-79 241
Msa0618700 MtrunA17_Chr4g0001221 53.778 225 103 1 38 262 75 298 1.02e-76 235
Msa0618700 MtrunA17_Chr2g0333771 51.111 225 109 1 38 262 80 303 2.34e-75 231
Msa0618700 MtrunA17_Chr1g0201331 49.356 233 107 3 35 259 71 300 3.92e-69 215
Msa0618700 MtrunA17_Chr5g0426131 45.349 258 124 5 4 255 8 254 2.46e-67 209
Msa0618700 MtrunA17_Chr1g0184541 38.073 218 134 1 35 252 59 275 3.48e-49 164
Msa0618700 MtrunA17_Chr4g0001111 52.778 144 67 1 38 181 75 217 3.04e-40 139
Msa0618700 MtrunA17_Chr4g0001161 50.746 134 65 1 51 184 1 133 8.70e-35 122
Msa0618700 MtrunA17_Chr4g0001121 54.651 86 39 0 177 262 6 91 2.18e-28 104
Msa0618700 MtrunA17_Chr8g0340161 31.915 235 149 4 26 252 10 241 1.31e-25 101
Msa0618700 MtrunA17_Chr2g0331261 32.653 245 152 4 26 263 11 249 2.03e-25 100
Msa0618700 MtrunA17_Chr1g0188771 31.624 234 151 4 27 253 12 243 7.26e-25 99.8
Msa0618700 MtrunA17_Chr4g0001151 44.361 133 54 3 51 181 1 115 2.56e-23 97.1
Msa0618700 MtrunA17_Chr5g0399341 32.787 244 150 6 23 256 7 246 4.08e-23 94.7
Msa0618700 MtrunA17_Chr1g0146161 32.093 215 137 6 37 245 18 229 2.90e-22 92.4
Msa0618700 MtrunA17_Chr1g0146171 31.034 232 150 6 19 245 3 229 3.60e-21 89.7
Msa0618700 MtrunA17_Chr6g0478191 29.461 241 147 6 27 253 12 243 6.07e-21 89.0
Msa0618700 MtrunA17_Chr3g0145671 30.303 231 140 5 35 247 34 261 3.35e-19 84.7
Msa0618700 MtrunA17_Chr7g0264111 28.879 232 144 5 27 237 28 259 8.89e-19 84.0
Msa0618700 MtrunA17_Chr4g0030861 31.416 226 143 4 43 256 26 251 1.20e-18 82.8
Msa0618700 MtrunA17_Chr7g0264961 30.802 237 143 7 23 247 9 236 6.80e-18 80.9
Msa0618700 MtrunA17_Chr1g0212671 32.068 237 147 7 37 263 20 252 7.24e-18 80.9
Msa0618700 MtrunA17_Chr2g0326621 28.821 229 145 5 32 247 48 271 4.73e-17 79.0
Msa0618700 MtrunA17_Chr5g0397391 26.201 229 153 6 35 247 49 277 9.85e-17 78.2
Msa0618700 MtrunA17_Chr4g0006001 27.193 228 151 6 35 247 53 280 1.01e-16 78.2
Msa0618700 MtrunA17_Chr8g0386961 27.500 240 157 7 35 258 49 287 1.52e-16 77.4
Msa0618700 MtrunA17_Chr3g0113211 28.261 230 147 7 35 247 52 280 1.69e-16 77.4
Msa0618700 MtrunA17_Chr5g0436701 28.448 232 143 8 35 247 52 279 2.02e-16 77.4
Msa0618700 MtrunA17_Chr1g0199731 26.531 245 153 5 27 247 28 269 1.07e-15 75.1
Msa0618700 MtrunA17_Chr4g0029071 27.426 237 145 6 35 247 36 269 4.87e-15 73.2
Msa0618700 MtrunA17_Chr4g0020781 30.460 174 112 4 84 252 30 199 2.68e-14 70.1
Msa0618700 MtrunA17_Chr7g0222791 27.155 232 162 2 37 261 20 251 2.07e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0618700 AT4G18910.1 74.400 250 57 1 26 268 40 289 4.62e-137 388
Msa0618700 AT4G19030.1 64.685 286 80 3 4 268 7 292 1.65e-133 379
Msa0618700 AT5G37810.1 59.917 242 97 0 28 269 33 274 5.01e-105 306
Msa0618700 AT5G37820.1 56.489 262 108 1 11 266 10 271 2.56e-103 302
Msa0618700 AT5G37820.2 56.489 262 108 1 11 266 46 307 1.35e-102 301
Msa0618700 AT2G34390.1 53.623 276 112 4 5 265 7 281 6.43e-99 291
Msa0618700 AT1G31885.1 50.558 269 122 2 2 259 3 271 7.32e-98 290
Msa0618700 AT4G18910.2 75.000 184 39 1 25 201 39 222 6.43e-94 276
Msa0618700 AT4G19030.3 63.761 218 58 3 4 200 7 224 1.52e-92 273
Msa0618700 AT2G34390.2 55.932 236 96 2 34 262 2 236 1.86e-92 273
Msa0618700 AT1G31885.2 55.760 217 89 1 50 259 1 217 2.04e-89 266
Msa0618700 AT4G19030.2 61.809 199 55 3 4 181 7 205 8.14e-81 243
Msa0618700 AT2G34390.3 55.189 212 79 4 5 201 7 217 2.55e-75 229
Msa0618700 AT1G80760.1 52.294 218 103 1 35 252 77 293 6.31e-73 226
Msa0618700 AT4G10380.1 50.216 231 108 2 35 259 75 304 9.42e-72 223
Msa0618700 AT2G34390.4 54.124 194 73 4 5 183 7 199 4.07e-67 208
Msa0618700 AT3G06100.1 38.356 219 133 2 37 254 45 262 1.20e-46 157
Msa0618700 AT3G06100.2 38.785 214 129 2 41 253 1 213 1.84e-46 155
Msa0618700 AT1G31885.3 47.863 117 57 1 2 114 3 119 9.40e-34 120
Msa0618700 AT2G29870.1 55.789 95 42 0 153 247 20 114 1.86e-32 116
Msa0618700 AT5G47450.1 33.191 235 147 3 33 257 14 248 9.80e-28 107
Msa0618700 AT3G16240.1 33.333 231 136 6 26 245 10 233 2.08e-27 106
Msa0618700 AT3G06100.3 35.915 142 89 2 114 254 41 181 6.50e-25 98.6
Msa0618700 AT4G17340.1 32.083 240 150 5 27 256 11 247 1.56e-24 99.0
Msa0618700 AT1G17810.1 30.116 259 165 5 16 260 4 260 1.90e-24 99.4
Msa0618700 AT3G26520.1 29.845 258 160 7 18 263 5 253 5.33e-22 92.4
Msa0618700 AT1G73190.1 28.400 250 165 4 16 253 4 251 3.23e-21 90.5
Msa0618700 AT2G36830.1 32.353 238 146 5 18 246 5 236 7.42e-21 89.4
Msa0618700 AT2G25810.1 31.878 229 144 8 32 253 13 236 1.17e-20 88.6
Msa0618700 AT4G35100.1 31.579 228 141 5 35 247 35 262 1.23e-20 89.4
Msa0618700 AT4G35100.2 31.579 228 141 5 35 247 35 262 1.23e-20 89.4
Msa0618700 AT2G16850.1 30.702 228 143 5 35 247 33 260 2.21e-20 88.6
Msa0618700 AT2G39010.1 29.362 235 143 6 35 247 35 268 9.71e-19 84.0
Msa0618700 AT2G45960.1 29.310 232 146 6 32 247 46 275 1.79e-18 83.2
Msa0618700 AT3G61430.2 28.821 229 145 6 35 247 49 275 2.25e-18 83.2
Msa0618700 AT3G61430.1 28.821 229 145 6 35 247 49 275 2.25e-18 83.2
Msa0618700 AT1G01620.1 28.139 231 145 5 35 247 49 276 6.58e-18 81.6
Msa0618700 AT3G47440.1 29.032 217 144 3 37 245 22 236 9.14e-18 80.9
Msa0618700 AT5G60660.1 25.746 268 161 6 15 247 5 269 1.31e-17 80.9
Msa0618700 AT4G00430.1 28.139 231 145 5 35 247 50 277 1.34e-17 80.9
Msa0618700 AT4G23400.1 27.706 231 146 5 35 247 50 277 2.77e-17 80.1
Msa0618700 AT3G54820.1 26.033 242 158 4 27 247 27 268 1.48e-16 78.2
Msa0618700 AT3G53420.1 25.714 245 155 5 27 247 28 269 3.35e-16 77.0
Msa0618700 AT3G53420.2 25.714 245 155 5 27 247 28 269 3.35e-16 77.0
Msa0618700 AT4G01470.1 29.046 241 159 4 15 247 1 237 3.46e-16 76.3
Msa0618700 AT2G45960.2 28.922 204 131 4 32 222 46 248 6.51e-15 73.2
Msa0618700 AT2G37170.2 25.306 245 156 5 27 247 69 310 7.81e-15 73.6
Msa0618700 AT2G37170.1 25.306 245 156 5 27 247 26 267 7.94e-15 73.2
Msa0618700 AT2G45960.3 28.922 204 131 4 32 222 46 248 8.19e-15 73.2
Msa0618700 AT1G01620.2 28.718 195 121 4 68 247 13 204 1.41e-14 71.2
Msa0618700 AT2G37180.1 25.306 245 156 5 27 247 26 267 3.76e-14 71.2

Find 79 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTTATGTTTATCATATC+TGG 0.173723 4_2:-69615940 Msa0618700:CDS
TTCCTGGAATTTCAATTGTT+TGG 0.217869 4_2:-69616616 Msa0618700:CDS
TCCTGGAATTTCAATTGTTT+GGG 0.246530 4_2:-69616615 Msa0618700:CDS
TACTTGGTGTCTCCTATTCT+TGG 0.280405 4_2:-69614933 Msa0618700:CDS
CTGTTTCAAGGGAAATCTTT+TGG 0.298217 4_2:+69616505 None:intergenic
GAAAATGTTGTAACACTTCC+TGG 0.313477 4_2:-69616632 Msa0618700:CDS
TTCATTGATGCTCCTGTGAT+TGG 0.328945 4_2:+69615014 None:intergenic
ACATATTTCTTGATATTTGC+TGG 0.333245 4_2:-69616686 Msa0618700:CDS
CATCTTTAAATGACATTTCA+AGG 0.337966 4_2:+69614684 None:intergenic
TACTCTCTTGGTCACATCTC+TGG 0.349138 4_2:-69616569 Msa0618700:CDS
GCAGGTCCTATACTTCTTGC+TGG 0.362295 4_2:+69614990 None:intergenic
TTTATCAAGGATGAAGTAGA+AGG 0.367542 4_2:-69614640 Msa0618700:three_prime_UTR
ATGGTGCTGGTTTACTCTCT+TGG 0.376622 4_2:-69616581 Msa0618700:CDS
CCCCAAACAATTGAAATTCC+AGG 0.378868 4_2:+69616614 None:intergenic
CACTGCTTCTTTCTTGCAGA+AGG 0.380717 4_2:-69616883 Msa0618700:intron
GGCAAACATAATCAGTTTGT+TGG 0.384708 4_2:-69616021 Msa0618700:CDS
TTGGAGCTGTGGCTGGTGCA+TGG 0.386493 4_2:-69614914 Msa0618700:CDS
TACGTTTAAAACAATCTCAT+TGG 0.388236 4_2:+69616950 None:intergenic
CTGTTAGAGGAACAAGAAAA+TGG 0.391643 4_2:+69617003 None:intergenic
CAAAAGATTTCCCTTGAAAC+AGG 0.391841 4_2:-69616504 Msa0618700:intron
GGGACTTGCTGTGATGGTGC+TGG 0.409165 4_2:-69616594 Msa0618700:CDS
ACTCTTAGACTAATATTTAA+CGG 0.412369 4_2:-69616042 Msa0618700:CDS
CCTATTCTTGGAGCTGTGGC+TGG 0.421647 4_2:-69614921 Msa0618700:CDS
TGGAGCTGTGGCTGGTGCAT+GGG 0.426749 4_2:-69614913 Msa0618700:CDS
TTTGTTGGAACACTTCCAGC+TGG 0.433109 4_2:-69616006 Msa0618700:CDS
CCAGCCACAGCTCCAAGAAT+AGG 0.454788 4_2:+69614921 None:intergenic
GAGTTTGGTCACCTGTTTCA+AGG 0.455962 4_2:+69616493 None:intergenic
ACAGTGAATACAGAGGAATA+TGG 0.460120 4_2:-69614959 Msa0618700:CDS
ATGAATCCAGCAAGAAGTAT+AGG 0.469904 4_2:-69614996 Msa0618700:CDS
CAAAACCATAGGGCTGACTT+TGG 0.480930 4_2:-69614818 Msa0618700:exon
ATTCAATCACAAAAGCTTGA+AGG 0.482940 4_2:+69615977 None:intergenic
TGCAGATTGGTGAGTTGGCT+GGG 0.483568 4_2:-69615583 Msa0618700:intron
TGCTGGTTGTGCTTCAGTGT+TGG 0.486213 4_2:-69616669 Msa0618700:CDS
TGTTTGGGGACTTGCTGTGA+TGG 0.487027 4_2:-69616600 Msa0618700:CDS
TTGCAGATTGGTGAGTTGGC+TGG 0.488849 4_2:-69615584 Msa0618700:intron
CTCTTGGTGATCTCGCGAAC+CGG 0.489371 4_2:+69614861 None:intergenic
CATGGGTTTATAACGTCATT+CGG 0.494271 4_2:-69614896 Msa0618700:CDS
CAGTTGGTAGCTGAGGTGAT+AGG 0.497515 4_2:-69616710 Msa0618700:CDS
CAGAGGAATATGGATATACT+TGG 0.503606 4_2:-69614949 Msa0618700:CDS
CTCCAGATATGATAAACATA+AGG 0.504080 4_2:+69615938 None:intergenic
AAACTTGCAGATTGGTGAGT+TGG 0.505757 4_2:-69615588 Msa0618700:intron
GAAAGAAGCAGTGGCATGAG+AGG 0.513919 4_2:+69616893 None:intergenic
CATAACATGTGATATACCTA+AGG 0.515975 4_2:+69614770 None:intergenic
TATTCACTGTGTAGAAAAGC+AGG 0.516811 4_2:+69614972 None:intergenic
GCTTGAAGGTCAGACCCAGC+TGG 0.524734 4_2:+69615991 None:intergenic
TTGTTGGAACACTTCCAGCT+GGG 0.527294 4_2:-69616005 Msa0618700:CDS
ATCAACCAAAGTCAGCCCTA+TGG 0.530318 4_2:+69614813 None:intergenic
TCTAAACGTGGATACTTCCA+AGG 0.530932 4_2:-69614735 Msa0618700:three_prime_UTR
CCTAAAAGCAGCAAAACCAT+AGG 0.538587 4_2:-69614829 Msa0618700:exon
CCTGGAATTTCAATTGTTTG+GGG 0.538744 4_2:-69616614 Msa0618700:CDS
ACTTGGTAAAGCAGAATACA+AGG 0.543009 4_2:+69614541 None:intergenic
GAGTTGGCTGGGATTGCCGT+TGG 0.544203 4_2:-69615572 Msa0618700:CDS
TCTTGTTCCTCTAACAGTGA+TGG 0.546360 4_2:-69616997 Msa0618700:exon
GTCTCCTATTCTTGGAGCTG+TGG 0.546485 4_2:-69614925 Msa0618700:CDS
AAGAGTTCCACTTGCAAGTG+TGG 0.546686 4_2:+69616059 None:intergenic
CATTCGGTACACGGATAAGC+CGG 0.557498 4_2:-69614880 Msa0618700:CDS
GCAAAAGCAATGGTAACTGC+AGG 0.558375 4_2:+69616533 None:intergenic
TATCATAAAGCATAAAATGT+TGG 0.558919 4_2:-69614567 Msa0618700:three_prime_UTR
AGTTTGGTCACCTGTTTCAA+GGG 0.560701 4_2:+69616494 None:intergenic
ACTTGAGCTGCTACATAAGC+CGG 0.561215 4_2:+69616090 None:intergenic
CATCGTATTTCTCATCTCAA+AGG 0.565229 4_2:-69617053 Msa0618700:five_prime_UTR
ATTTATGCAGTTGGTAGCTG+AGG 0.567762 4_2:-69616717 Msa0618700:intron
CTTTGAGATGAGAAATACGA+TGG 0.570576 4_2:+69617054 None:intergenic
AAAGCATATTGATTTCCCCT+TGG 0.572159 4_2:+69614718 None:intergenic
TTTGGATCCACACTTGCAAG+TGG 0.573697 4_2:-69616066 Msa0618700:CDS
CTAAAAGCAGCAAAACCATA+GGG 0.583342 4_2:-69614828 Msa0618700:exon
TTATAACGTCATTCGGTACA+CGG 0.586612 4_2:-69614889 Msa0618700:CDS
AATATCACTAATAGTATACA+TGG 0.586944 4_2:-69614614 Msa0618700:three_prime_UTR
TTTGGTGCTAGCAAAAGCAA+TGG 0.603584 4_2:+69616523 None:intergenic
TTATATGACAGACCAATCAC+AGG 0.604024 4_2:-69615026 Msa0618700:intron
TTCTAACGTTTATCTAAACG+TGG 0.616490 4_2:-69614747 Msa0618700:three_prime_UTR
CAAAAGTACAGTAGATCCAA+CGG 0.621362 4_2:+69615556 None:intergenic
CTAAACGTGGATACTTCCAA+GGG 0.621976 4_2:-69614734 Msa0618700:three_prime_UTR
ATAACATGTGATATACCTAA+GGG 0.649187 4_2:+69614771 None:intergenic
CGTTACCGCTCTATTATCAG+TGG 0.661375 4_2:+69615912 None:intergenic
CTTCTGCAAGAAAGAAGCAG+TGG 0.662046 4_2:+69616884 None:intergenic
TTTCTACACAGTGAATACAG+AGG 0.725695 4_2:-69614966 Msa0618700:CDS
AGTTGCCACTGATAATAGAG+CGG 0.742875 4_2:-69615917 Msa0618700:intron
TAAACGTGGATACTTCCAAG+GGG 0.744863 4_2:-69614733 Msa0618700:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTATTTTTTTTAAA+TGG + chr4_2:69616263-69616282 None:intergenic 0.0%
!! TATTATAAACTAATATGAAA+AGG + chr4_2:69615257-69615276 None:intergenic 10.0%
!!! TGATAATATTGAATAATTTT+GGG + chr4_2:69616111-69616130 None:intergenic 10.0%
!!! ATGATAATATTGAATAATTT+TGG + chr4_2:69616112-69616131 None:intergenic 10.0%
!!! TTTCAAATTTTAATTTATCA+AGG - chr4_2:69616959-69616978 Msa0618700:CDS 10.0%
!!! TTTGCTATTTGATTTATTAA+AGG - chr4_2:69614815-69614834 Msa0618700:exon 15.0%
!! TAGGGAATAAAATAAAAAAT+TGG - chr4_2:69615330-69615349 Msa0618700:intron 15.0%
!! AGGGAATAAAATAAAAAATT+GGG - chr4_2:69615331-69615350 Msa0618700:intron 15.0%
!! GAATTACAAATATTCAAATA+TGG + chr4_2:69615993-69616012 None:intergenic 15.0%
!! AAATATGATTGATTATCATT+TGG + chr4_2:69616433-69616452 None:intergenic 15.0%
!! AATAATTGACATGATTTCTT+TGG + chr4_2:69615281-69615300 None:intergenic 20.0%
!! ACTCTTAGACTAATATTTAA+CGG - chr4_2:69615570-69615589 Msa0618700:CDS 20.0%
!!! AATTTCATCTCTCTTTATTT+TGG - chr4_2:69615775-69615794 Msa0618700:intron 20.0%
!! TCAAACTCTAATATAAAAAG+AGG - chr4_2:69615855-69615874 Msa0618700:intron 20.0%
!! TGTGATTTAGTATTTATTCT+TGG - chr4_2:69616188-69616207 Msa0618700:intron 20.0%
!! AATATCACTAATAGTATACA+TGG - chr4_2:69616998-69617017 Msa0618700:exon 20.0%
!! TATCATAAAGCATAAAATGT+TGG - chr4_2:69617045-69617064 Msa0618700:five_prime_UTR 20.0%
!! TACGTTTAAAACAATCTCAT+TGG + chr4_2:69614665-69614684 None:intergenic 25.0%
!!! GATTGTTTTAAACGTAAACA+AGG - chr4_2:69614669-69614688 Msa0618700:three_prime_UTR 25.0%
! TTGAGACAAAAAGAACAAAA+AGG + chr4_2:69614760-69614779 None:intergenic 25.0%
!!! AATCTGAAACCTTTTTTTCA+TGG - chr4_2:69614861-69614880 Msa0618700:CDS 25.0%
! ACATATTTCTTGATATTTGC+TGG - chr4_2:69614926-69614945 Msa0618700:CDS 25.0%
! TTTGCCAAATAGTTGAAAAA+TGG + chr4_2:69615146-69615165 None:intergenic 25.0%
!!! AAAACTTGTTAGGAAATTAG+AGG - chr4_2:69615163-69615182 Msa0618700:intron 25.0%
!!! ATTCATTTTTCAAGCAAAGT+AGG + chr4_2:69615212-69615231 None:intergenic 25.0%
! AACACACAATTTCATTGAAT+AGG - chr4_2:69615311-69615330 Msa0618700:intron 25.0%
! ACACACAATTTCATTGAATA+GGG - chr4_2:69615312-69615331 Msa0618700:intron 25.0%
!! CTCAACCAGATTTTAAATAA+AGG - chr4_2:69615405-69615424 Msa0618700:intron 25.0%
!! GCAAACCTTTATTTAAAATC+TGG + chr4_2:69615413-69615432 None:intergenic 25.0%
! TACCTTATGTTTATCATATC+TGG - chr4_2:69615672-69615691 Msa0618700:intron 25.0%
!! TTGTTTCTTGCTTGTTAATT+TGG - chr4_2:69615743-69615762 Msa0618700:intron 25.0%
! TAATACGTGTTTAGCAAAAT+AGG - chr4_2:69615815-69615834 Msa0618700:intron 25.0%
! AATACGTGTTTAGCAAAATA+GGG - chr4_2:69615816-69615835 Msa0618700:intron 25.0%
! GTTGTCTAAATATAGTTGTA+AGG - chr4_2:69615893-69615912 Msa0618700:intron 25.0%
!!! TTGTAAGGTTTTGAATCATT+TGG - chr4_2:69615908-69615927 Msa0618700:intron 25.0%
!!! TTATTTTGAAACTTGCAGAT+TGG - chr4_2:69616016-69616035 Msa0618700:CDS 25.0%
! ATACTATATGTTTCTCTTCA+TGG - chr4_2:69616214-69616233 Msa0618700:intron 25.0%
! TAGAAATTTGCAGAATCATA+AGG + chr4_2:69616553-69616572 None:intergenic 25.0%
! ATAACATGTGATATACCTAA+GGG + chr4_2:69616844-69616863 None:intergenic 25.0%
! CATCTTTAAATGACATTTCA+AGG + chr4_2:69616931-69616950 None:intergenic 25.0%
TGTCACAATCCATGAAAAAA+AGG + chr4_2:69614873-69614892 None:intergenic 30.0%
TGTGACAATATTTATGCAGT+TGG - chr4_2:69614886-69614905 Msa0618700:CDS 30.0%
TTCCTGGAATTTCAATTGTT+TGG - chr4_2:69614996-69615015 Msa0618700:CDS 30.0%
TCCTGGAATTTCAATTGTTT+GGG - chr4_2:69614997-69615016 Msa0618700:CDS 30.0%
TAGTTGAAAAATGGTGAGTT+TGG + chr4_2:69615137-69615156 None:intergenic 30.0%
!! CTCACCATTTTTCAACTATT+TGG - chr4_2:69615139-69615158 Msa0618700:intron 30.0%
! ACTATTTGGCAAAACTTGTT+AGG - chr4_2:69615153-69615172 Msa0618700:intron 30.0%
ATTCAATCACAAAAGCTTGA+AGG + chr4_2:69615638-69615657 None:intergenic 30.0%
CTCCAGATATGATAAACATA+AGG + chr4_2:69615677-69615696 None:intergenic 30.0%
ATACGTGTTTAGCAAAATAG+GGG - chr4_2:69615817-69615836 Msa0618700:intron 30.0%
! TTTTGAATGTGATGTTTGCA+GGG - chr4_2:69616074-69616093 Msa0618700:CDS 30.0%
CATAACATGTGATATACCTA+AGG + chr4_2:69616845-69616864 None:intergenic 30.0%
TTCTAACGTTTATCTAAACG+TGG - chr4_2:69616865-69616884 Msa0618700:intron 30.0%
TTTATCAAGGATGAAGTAGA+AGG - chr4_2:69616972-69616991 Msa0618700:CDS 30.0%
!! CTTTGAGATGAGAAATACGA+TGG + chr4_2:69614561-69614580 None:intergenic 35.0%
CATCGTATTTCTCATCTCAA+AGG - chr4_2:69614559-69614578 Msa0618700:three_prime_UTR 35.0%
CTGTTAGAGGAACAAGAAAA+TGG + chr4_2:69614612-69614631 None:intergenic 35.0%
! TTTTCTTCCATCACTGTTAG+AGG + chr4_2:69614625-69614644 None:intergenic 35.0%
GAAAATGTTGTAACACTTCC+TGG - chr4_2:69614980-69614999 Msa0618700:CDS 35.0%
CCTGGAATTTCAATTGTTTG+GGG - chr4_2:69614998-69615017 Msa0618700:CDS 35.0%
! CTGTTTCAAGGGAAATCTTT+TGG + chr4_2:69615110-69615129 None:intergenic 35.0%
CAAAAGATTTCCCTTGAAAC+AGG - chr4_2:69615108-69615127 Msa0618700:intron 35.0%
! TATGTAGCAGCTCAAGTTTT+TGG - chr4_2:69615528-69615547 Msa0618700:intron 35.0%
GGCAAACATAATCAGTTTGT+TGG - chr4_2:69615591-69615610 Msa0618700:intron 35.0%
! CAAGCAAGAAACAAAGCATT+AGG + chr4_2:69615737-69615756 None:intergenic 35.0%
! CAAAAGTACAGTAGATCCAA+CGG + chr4_2:69616059-69616078 None:intergenic 35.0%
! CTTTTGAATGTGATGTTTGC+AGG - chr4_2:69616073-69616092 Msa0618700:CDS 35.0%
! TTACGTAGTTCATCACCTTT+TGG - chr4_2:69616136-69616155 Msa0618700:intron 35.0%
!! ACTTGCTATCTGTTTCCAAA+AGG + chr4_2:69616154-69616173 None:intergenic 35.0%
TTATATGACAGACCAATCAC+AGG - chr4_2:69616586-69616605 Msa0618700:CDS 35.0%
! ATGAATCCAGCAAGAAGTAT+AGG - chr4_2:69616616-69616635 Msa0618700:CDS 35.0%
TATTCACTGTGTAGAAAAGC+AGG + chr4_2:69616643-69616662 None:intergenic 35.0%
TTTCTACACAGTGAATACAG+AGG - chr4_2:69616646-69616665 Msa0618700:CDS 35.0%
ACAGTGAATACAGAGGAATA+TGG - chr4_2:69616653-69616672 Msa0618700:CDS 35.0%
CAGAGGAATATGGATATACT+TGG - chr4_2:69616663-69616682 Msa0618700:CDS 35.0%
CATGGGTTTATAACGTCATT+CGG - chr4_2:69616716-69616735 Msa0618700:intron 35.0%
TTATAACGTCATTCGGTACA+CGG - chr4_2:69616723-69616742 Msa0618700:intron 35.0%
!! TTTTAGGAAAGATGAGCTCT+TGG + chr4_2:69616770-69616789 None:intergenic 35.0%
CTAAAAGCAGCAAAACCATA+GGG - chr4_2:69616784-69616803 Msa0618700:intron 35.0%
!! AGCATGTTTGATTTTCCCTT+AGG - chr4_2:69616826-69616845 Msa0618700:intron 35.0%
!! AAAGCATATTGATTTCCCCT+TGG + chr4_2:69616897-69616916 None:intergenic 35.0%
TCTTGTTCCTCTAACAGTGA+TGG - chr4_2:69614615-69614634 Msa0618700:three_prime_UTR 40.0%
!! ATTTATGCAGTTGGTAGCTG+AGG - chr4_2:69614895-69614914 Msa0618700:CDS 40.0%
CCCCAAACAATTGAAATTCC+AGG + chr4_2:69615001-69615020 None:intergenic 40.0%
!! TTTGGTGCTAGCAAAAGCAA+TGG + chr4_2:69615092-69615111 None:intergenic 40.0%
AGTTTGGTCACCTGTTTCAA+GGG + chr4_2:69615121-69615140 None:intergenic 40.0%
TTATGTCGCTACCTAGATCA+CGG + chr4_2:69615438-69615457 None:intergenic 40.0%
CTGCAACATAACTGCAATTG+AGG - chr4_2:69615479-69615498 Msa0618700:intron 40.0%
TGAGGTCACATTGATCGTAT+AGG - chr4_2:69615497-69615516 Msa0618700:intron 40.0%
CACATTGATCGTATAGGTAC+CGG - chr4_2:69615503-69615522 Msa0618700:intron 40.0%
AGTTGCCACTGATAATAGAG+CGG - chr4_2:69615695-69615714 Msa0618700:intron 40.0%
GTGTTTAGCAAAATAGGGGT+TGG - chr4_2:69615821-69615840 Msa0618700:intron 40.0%
AAACTTGCAGATTGGTGAGT+TGG - chr4_2:69616024-69616043 Msa0618700:CDS 40.0%
TTCATTGATGCTCCTGTGAT+TGG + chr4_2:69616601-69616620 None:intergenic 40.0%
!! TACTTGGTGTCTCCTATTCT+TGG - chr4_2:69616679-69616698 Msa0618700:CDS 40.0%
!!! CCTATGGTTTTGCTGCTTTT+AGG + chr4_2:69616786-69616805 None:intergenic 40.0%
CCTAAAAGCAGCAAAACCAT+AGG - chr4_2:69616783-69616802 Msa0618700:intron 40.0%
TCTAAACGTGGATACTTCCA+AGG - chr4_2:69616877-69616896 Msa0618700:intron 40.0%
CTAAACGTGGATACTTCCAA+GGG - chr4_2:69616878-69616897 Msa0618700:intron 40.0%
TAAACGTGGATACTTCCAAG+GGG - chr4_2:69616879-69616898 Msa0618700:intron 40.0%
CTTCTGCAAGAAAGAAGCAG+TGG + chr4_2:69614731-69614750 None:intergenic 45.0%
CACTGCTTCTTTCTTGCAGA+AGG - chr4_2:69614729-69614748 Msa0618700:three_prime_UTR 45.0%
!! ATGGTGCTGGTTTACTCTCT+TGG - chr4_2:69615031-69615050 Msa0618700:intron 45.0%
TACTCTCTTGGTCACATCTC+TGG - chr4_2:69615043-69615062 Msa0618700:intron 45.0%
GCAAAAGCAATGGTAACTGC+AGG + chr4_2:69615082-69615101 None:intergenic 45.0%
GAGTTTGGTCACCTGTTTCA+AGG + chr4_2:69615122-69615141 None:intergenic 45.0%
ACTTGAGCTGCTACATAAGC+CGG + chr4_2:69615525-69615544 None:intergenic 45.0%
TTTGGATCCACACTTGCAAG+TGG - chr4_2:69615546-69615565 Msa0618700:CDS 45.0%
AAGAGTTCCACTTGCAAGTG+TGG + chr4_2:69615556-69615575 None:intergenic 45.0%
TTTGTTGGAACACTTCCAGC+TGG - chr4_2:69615606-69615625 Msa0618700:intron 45.0%
TTGTTGGAACACTTCCAGCT+GGG - chr4_2:69615607-69615626 Msa0618700:intron 45.0%
CGTTACCGCTCTATTATCAG+TGG + chr4_2:69615703-69615722 None:intergenic 45.0%
! CAAAACCATAGGGCTGACTT+TGG - chr4_2:69616794-69616813 Msa0618700:intron 45.0%
ATCAACCAAAGTCAGCCCTA+TGG + chr4_2:69616802-69616821 None:intergenic 45.0%
GAAAGAAGCAGTGGCATGAG+AGG + chr4_2:69614722-69614741 None:intergenic 50.0%
!! CAGTTGGTAGCTGAGGTGAT+AGG - chr4_2:69614902-69614921 Msa0618700:CDS 50.0%
! TGCTGGTTGTGCTTCAGTGT+TGG - chr4_2:69614943-69614962 Msa0618700:CDS 50.0%
!! TGTTTGGGGACTTGCTGTGA+TGG - chr4_2:69615012-69615031 Msa0618700:CDS 50.0%
AAGGTTTGCGACCGTGATCT+AGG - chr4_2:69615424-69615443 Msa0618700:intron 50.0%
! TTGCAGATTGGTGAGTTGGC+TGG - chr4_2:69616028-69616047 Msa0618700:CDS 50.0%
! TGCAGATTGGTGAGTTGGCT+GGG - chr4_2:69616029-69616048 Msa0618700:CDS 50.0%
GCAGGTCCTATACTTCTTGC+TGG + chr4_2:69616625-69616644 None:intergenic 50.0%
GTCTCCTATTCTTGGAGCTG+TGG - chr4_2:69616687-69616706 Msa0618700:CDS 50.0%
CATTCGGTACACGGATAAGC+CGG - chr4_2:69616732-69616751 Msa0618700:intron 50.0%
CCAGCCACAGCTCCAAGAAT+AGG + chr4_2:69616694-69616713 None:intergenic 55.0%
CCTATTCTTGGAGCTGTGGC+TGG - chr4_2:69616691-69616710 Msa0618700:CDS 55.0%
! CTCTTGGTGATCTCGCGAAC+CGG + chr4_2:69616754-69616773 None:intergenic 55.0%
!! GGGACTTGCTGTGATGGTGC+TGG - chr4_2:69615018-69615037 Msa0618700:CDS 60.0%
GCTTGAAGGTCAGACCCAGC+TGG + chr4_2:69615624-69615643 None:intergenic 60.0%
GAGTTGGCTGGGATTGCCGT+TGG - chr4_2:69616040-69616059 Msa0618700:CDS 60.0%
TTGGAGCTGTGGCTGGTGCA+TGG - chr4_2:69616698-69616717 Msa0618700:CDS 60.0%
TGGAGCTGTGGCTGGTGCAT+GGG - chr4_2:69616699-69616718 Msa0618700:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 69614551 69617083 69614551 ID=Msa0618700;Name=Msa0618700
chr4_2 mRNA 69614551 69617083 69614551 ID=Msa0618700-mRNA-1;Parent=Msa0618700;Name=Msa0618700-mRNA-1;_AED=0.29;_eAED=0.29;_QI=83|0.75|0.6|1|1|1|5|279|269
chr4_2 exon 69614551 69615037 69614551 ID=Msa0618700-mRNA-1:exon:20185;Parent=Msa0618700-mRNA-1
chr4_2 exon 69615539 69615600 69615539 ID=Msa0618700-mRNA-1:exon:20184;Parent=Msa0618700-mRNA-1
chr4_2 exon 69615918 69616115 69615918 ID=Msa0618700-mRNA-1:exon:20183;Parent=Msa0618700-mRNA-1
chr4_2 exon 69616505 69616729 69616505 ID=Msa0618700-mRNA-1:exon:20182;Parent=Msa0618700-mRNA-1
chr4_2 exon 69616884 69617083 69616884 ID=Msa0618700-mRNA-1:exon:20181;Parent=Msa0618700-mRNA-1
chr4_2 five_prime_UTR 69617001 69617083 69617001 ID=Msa0618700-mRNA-1:five_prime_utr;Parent=Msa0618700-mRNA-1
chr4_2 CDS 69616884 69617000 69616884 ID=Msa0618700-mRNA-1:cds;Parent=Msa0618700-mRNA-1
chr4_2 CDS 69616505 69616729 69616505 ID=Msa0618700-mRNA-1:cds;Parent=Msa0618700-mRNA-1
chr4_2 CDS 69615918 69616115 69615918 ID=Msa0618700-mRNA-1:cds;Parent=Msa0618700-mRNA-1
chr4_2 CDS 69615539 69615600 69615539 ID=Msa0618700-mRNA-1:cds;Parent=Msa0618700-mRNA-1
chr4_2 CDS 69614830 69615037 69614830 ID=Msa0618700-mRNA-1:cds;Parent=Msa0618700-mRNA-1
chr4_2 three_prime_UTR 69614551 69614829 69614551 ID=Msa0618700-mRNA-1:three_prime_utr;Parent=Msa0618700-mRNA-1
Gene Sequence

>Msa0618700

ATGGAAGAAAATTCAGCTAGCAATGCAACCAATGAGATTGTTTTAAACGTAAACAAGGCTGTCTCTAACACAAGTGAAGACTCAACCTCTCATGCCACTGCTTCTTTCTTGCAGAAGTTGGTAGCTGAGGTGATAGGCACATATTTCTTGATATTTGCTGGTTGTGCTTCAGTGTTGGTGAACAAGAACAATGAAAATGTTGTAACACTTCCTGGAATTTCAATTGTTTGGGGACTTGCTGTGATGGTGCTGGTTTACTCTCTTGGTCACATCTCTGGTGCTCATTTCAATCCTGCAGTTACCATTGCTTTTGCTAGCACCAAAAGATTTCCCTTGAAACAGGTACCGGCTTATGTAGCAGCTCAAGTTTTTGGATCCACACTTGCAAGTGGAACTCTTAGACTAATATTTAACGGCAAACATAATCAGTTTGTTGGAACACTTCCAGCTGGGTCTGACCTTCAAGCTTTTGTGATTGAATTCATCATCACTTTTTACCTTATGTTTATCATATCTGGAGTTGCCACTGATAATAGAGCGATTGGTGAGTTGGCTGGGATTGCCGTTGGATCTACTGTACTTTTGAATGTGATGTTTGCAGGACCAATCACAGGAGCATCAATGAATCCAGCAAGAAGTATAGGACCTGCTTTTCTACACAGTGAATACAGAGGAATATGGATATACTTGGTGTCTCCTATTCTTGGAGCTGTGGCTGGTGCATGGGTTTATAACGTCATTCGGTACACGGATAAGCCGGTTCGCGAGATCACCAAGAGCTCATCTTTCCTAAAAGCAGCAAAACCATAG

Protein sequence

>Msa0618700

MEENSASNATNEIVLNVNKAVSNTSEDSTSHATASFLQKLVAEVIGTYFLIFAGCASVLVNKNNENVVTLPGISIVWGLAVMVLVYSLGHISGAHFNPAVTIAFASTKRFPLKQVPAYVAAQVFGSTLASGTLRLIFNGKHNQFVGTLPAGSDLQAFVIEFIITFYLMFIISGVATDNRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAFLHSEYRGIWIYLVSPILGAVAGAWVYNVIRYTDKPVREITKSSSFLKAAKP*