AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0045810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045810 MtrunA17_Chr1g0213031 90.625 224 12 2 1 216 1 223 2.44e-144 401
Msa0045810 MtrunA17_Chr1g0213021 85.586 222 24 1 5 218 4 225 6.52e-137 382
Msa0045810 MtrunA17_Chr1g0213011 57.919 221 85 1 6 218 2 222 9.06e-87 255
Msa0045810 MtrunA17_Chr1g0213051 48.858 219 102 2 5 213 2 220 1.25e-64 199
Msa0045810 MtrunA17_Chr1g0213041 46.698 212 103 2 9 210 6 217 1.45e-60 189
Msa0045810 MtrunA17_Chr7g0224381 42.262 168 89 1 5 164 2 169 5.84e-42 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045810 AT3G55120.1 47.847 209 101 2 9 209 16 224 3.22e-60 189
Msa0045810 AT5G66230.2 45.024 211 115 1 9 218 6 216 5.80e-50 171
Msa0045810 AT5G66220.1 45.783 166 89 1 54 218 2 167 3.63e-43 143

Find 56 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACTTAGAGAAGCCTTTA+AGG 0.168675 1_1:+77806847 Msa0045810:CDS
TTCAGGTATTGTCTCATCTT+TGG 0.255423 1_1:-77807034 None:intergenic
GGTGGAGTTCATTGAATTTC+CGG 0.261011 1_1:+77802589 Msa0045810:CDS
CAAACACCAAATGGAACATT+AGG 0.304549 1_1:+77806908 Msa0045810:CDS
GTTAGAGGGTTAGATATTGA+TGG 0.314700 1_1:+77806149 Msa0045810:CDS
ATGTTCCTTCAGATTTCATA+TGG 0.333432 1_1:-77806796 None:intergenic
GCCTGCTTTGAAAGAGAGTT+TGG 0.339202 1_1:+77807134 Msa0045810:CDS
TCTTTCAAAGCAGGCGAAAC+AGG 0.349240 1_1:-77807126 None:intergenic
TTTGTGAAGTTCACTGTATT+AGG 0.371421 1_1:+77806176 Msa0045810:CDS
CACTGTATTAGGAGTTTACT+TGG 0.384450 1_1:+77806187 Msa0045810:CDS
ATAACAGCATACTCATGTTC+AGG 0.391503 1_1:-77807051 None:intergenic
CTAATGGTATGTAGGGTTAG+AGG 0.391638 1_1:+77806134 Msa0045810:intron
AAGATTGACGACTTCAACAT+TGG 0.399504 1_1:+77807180 Msa0045810:CDS
TATAAACAACAAGCCGCTTT+CGG 0.408427 1_1:+77807071 Msa0045810:CDS
AAACACCAAATGGAACATTA+GGG 0.415014 1_1:+77806909 Msa0045810:CDS
CTAACCCCTAATGTTCCATT+TGG 0.420625 1_1:-77806914 None:intergenic
TTCTTCAGACAAACACCAAA+TGG 0.421941 1_1:+77806899 Msa0045810:CDS
CACCTTCACTCCAGTGATCA+TGG 0.422784 1_1:-77802570 None:intergenic
GGCTTCTCTAAGTTCTTGAA+TGG 0.424062 1_1:-77806840 None:intergenic
AGGAGTTTACTTGGAAGAAA+AGG 0.434965 1_1:+77806196 Msa0045810:CDS
ATGAAATCTGAAGGAACATA+TGG 0.443450 1_1:+77806800 Msa0045810:CDS
GCCGCTTTCGGAGGCAGTGT+TGG 0.468906 1_1:+77807083 Msa0045810:CDS
AAATAGGACTTGGTGGATGA+TGG 0.479938 1_1:-77802626 None:intergenic
GTTCATTGAATTTCCGGCAG+TGG 0.480687 1_1:+77802595 Msa0045810:CDS
GATGGAGGTGTCACCACTGC+CGG 0.484240 1_1:-77802608 None:intergenic
AGGTAGTGAATATGTGAGAA+AGG 0.489997 1_1:+77806754 Msa0045810:CDS
TGATATCTCGGTAGAAATCA+AGG 0.490821 1_1:-77806277 None:intergenic
CATCGAATAAATTTCTCAAA+GGG 0.503134 1_1:-77806710 None:intergenic
GCCAAACTCTCTTTCAAAGC+AGG 0.514705 1_1:-77807135 None:intergenic
AACAGGAATTTCTCCGGTCA+TGG 0.514747 1_1:-77807109 None:intergenic
ACAAAGGTGAGAACACTAGA+AGG 0.516764 1_1:+77806734 Msa0045810:CDS
AGGGATTCAAAGAGCTGAGA+TGG 0.521295 1_1:-77806257 None:intergenic
TGTTCCTTCAGATTTCATAT+GGG 0.526558 1_1:-77806795 None:intergenic
TAGCATCACTTACTCCTAAG+TGG 0.528607 1_1:+77806222 Msa0045810:CDS
GCAGCAGCATCCATGATCAC+TGG 0.535344 1_1:+77802560 Msa0045810:CDS
ATCACTTACTCCTAAGTGGA+AGG 0.541188 1_1:+77806226 Msa0045810:CDS
ACATCGAATAAATTTCTCAA+AGG 0.541800 1_1:-77806711 None:intergenic
ATCCATGATCACTGGAGTGA+AGG 0.543867 1_1:+77802568 Msa0045810:CDS
TAATGGTATGTAGGGTTAGA+GGG 0.545718 1_1:+77806135 Msa0045810:intron
GGAGTCTTGCCCTTCCACTT+AGG 0.546270 1_1:-77806236 None:intergenic
TGGTACCTTTGATGATATCT+CGG 0.556629 1_1:-77806289 None:intergenic
CTGAAGAAAACACCAGCCCC+TGG 0.557559 1_1:-77806884 None:intergenic
CATGATCACTGGAGTGAAGG+TGG 0.559960 1_1:+77802571 Msa0045810:CDS
GCAGTGTTGGAGACCATGAC+CGG 0.572482 1_1:+77807096 Msa0045810:CDS
AGGCGAAACAGGAATTTCTC+CGG 0.576812 1_1:-77807115 None:intergenic
GAAATTTATTCGATGTACAA+AGG 0.580122 1_1:+77806718 Msa0045810:CDS
TCCAACACTGCCTCCGAAAG+CGG 0.582725 1_1:-77807084 None:intergenic
TTCTACCGAGATATCATCAA+AGG 0.610658 1_1:+77806284 Msa0045810:CDS
ATTGCCCATATGAAATCTGA+AGG 0.611017 1_1:+77806791 Msa0045810:CDS
AAACAACAAGCCGCTTTCGG+AGG 0.621155 1_1:+77807074 Msa0045810:CDS
TAGGACTTGGTGGATGATGG+AGG 0.628115 1_1:-77802623 None:intergenic
GATATCTCGGTAGAAATCAA+GGG 0.631456 1_1:-77806276 None:intergenic
AAGAAAACACCAGCCCCTGG+TGG 0.637698 1_1:-77806881 None:intergenic
TCACTTACTCCTAAGTGGAA+GGG 0.638389 1_1:+77806227 Msa0045810:CDS
ATAGCTATAAGCTATGGCAA+AGG 0.662193 1_1:+77802538 None:intergenic
AACACCAAATGGAACATTAG+GGG 0.677472 1_1:+77806910 Msa0045810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTATTATTTTTT+GGG - chr1_1:77805369-77805388 None:intergenic 0.0%
!!! TTTTTATTATTATTATTTTT+TGG - chr1_1:77805370-77805389 None:intergenic 0.0%
!! TCTAATAATTAATATATAAC+AGG + chr1_1:77803287-77803306 Msa0045810:intron 10.0%
!!! AAAAATAAATCTTTTTTATG+AGG - chr1_1:77803469-77803488 None:intergenic 10.0%
!!! AAAAAAAAAAAAAGTCTTTT+TGG - chr1_1:77804057-77804076 None:intergenic 10.0%
!! ATCAAAACTTTATAAAAAAA+AGG + chr1_1:77804705-77804724 Msa0045810:intron 10.0%
!! TCAAAACTTTATAAAAAAAA+GGG + chr1_1:77804706-77804725 Msa0045810:intron 10.0%
!! AATTACAGATATAAAAAATA+AGG + chr1_1:77805163-77805182 Msa0045810:intron 10.0%
!! ATTACAGATATAAAAAATAA+GGG + chr1_1:77805164-77805183 Msa0045810:intron 10.0%
!!! TTTTATTGATCATTCTTTTT+AGG - chr1_1:77803216-77803235 None:intergenic 15.0%
!! TTATACATTAACAATCTAAT+AGG + chr1_1:77803578-77803597 Msa0045810:intron 15.0%
!! TATCAAAATATAATGTAATG+TGG - chr1_1:77803608-77803627 None:intergenic 15.0%
!!! TAAACATTTTCTCTTTTTTA+TGG - chr1_1:77803759-77803778 None:intergenic 15.0%
!! TCAAATATAAATATAAGTAG+CGG - chr1_1:77804224-77804243 None:intergenic 15.0%
!!! AGAACCTTTTTTTTTTTTTT+AGG + chr1_1:77804285-77804304 Msa0045810:intron 15.0%
!! CTTACCTAAAAAAAAAAAAA+AGG - chr1_1:77804292-77804311 None:intergenic 15.0%
!! CATCTTACATTATTATATAA+AGG - chr1_1:77804346-77804365 None:intergenic 15.0%
!!! ACAATAGTTTTTATTGATAT+GGG - chr1_1:77804603-77804622 None:intergenic 15.0%
!!! AACAATAGTTTTTATTGATA+TGG - chr1_1:77804604-77804623 None:intergenic 15.0%
!!! AAAAGAATATTTCTATTTCT+GGG - chr1_1:77805228-77805247 None:intergenic 15.0%
!!! TAAAAGAATATTTCTATTTC+TGG - chr1_1:77805229-77805248 None:intergenic 15.0%
!! TTATGTCTAATTAAAAATTG+AGG + chr1_1:77805584-77805603 Msa0045810:intron 15.0%
!! TATGTCTAATTAAAAATTGA+GGG + chr1_1:77805585-77805604 Msa0045810:intron 15.0%
!!! TGATATTTTAATAAACCTTA+AGG + chr1_1:77805616-77805635 Msa0045810:intron 15.0%
!!! GATATTTTAATAAACCTTAA+GGG + chr1_1:77805617-77805636 Msa0045810:intron 15.0%
!!! AATTTTGATGGTTTTTTTTA+GGG - chr1_1:77805659-77805678 None:intergenic 15.0%
!! AATGTATACTCATTTATATA+TGG + chr1_1:77806675-77806694 Msa0045810:intron 15.0%
!! ATGTATACTCATTTATATAT+GGG + chr1_1:77806676-77806695 Msa0045810:intron 15.0%
!!! TTAAAATGTGTTGATTAAAT+TGG - chr1_1:77806976-77806995 None:intergenic 15.0%
!! AATCTTTAACAAATGTCATA+TGG + chr1_1:77803168-77803187 Msa0045810:intron 20.0%
!! ATCTTTAACAAATGTCATAT+GGG + chr1_1:77803169-77803188 Msa0045810:intron 20.0%
!! AAATCTTACTTTCATAAGTT+TGG - chr1_1:77803318-77803337 None:intergenic 20.0%
!! ATTATAGATAATTACAACGA+GGG + chr1_1:77803396-77803415 Msa0045810:intron 20.0%
!!! ATAAATCTTTTTTATGAGGT+CGG - chr1_1:77803465-77803484 None:intergenic 20.0%
!! AAACATACTTAAAGTAAGTT+TGG + chr1_1:77804027-77804046 Msa0045810:intron 20.0%
!!! ATGGATATTTTAAAAAGTCA+CGG + chr1_1:77804108-77804127 Msa0045810:intron 20.0%
!! ACTCTATTGATATTAATATG+AGG - chr1_1:77804400-77804419 None:intergenic 20.0%
!!! ACTGTTTTTTTAAAACTAGA+GGG - chr1_1:77804780-77804799 None:intergenic 20.0%
!! TTTACCTTAAATTCCTTTAA+CGG + chr1_1:77804910-77804929 Msa0045810:intron 20.0%
!! ATAGATATACAATCAAAAAC+TGG - chr1_1:77805136-77805155 None:intergenic 20.0%
!! ATGTCTAATTAAAAATTGAG+GGG + chr1_1:77805586-77805605 Msa0045810:intron 20.0%
!!! CAATTTTGATGGTTTTTTTT+AGG - chr1_1:77805660-77805679 None:intergenic 20.0%
!! ATAACCATGATTTATCTAAA+AGG + chr1_1:77805835-77805854 Msa0045810:intron 20.0%
!!! TTTTCCATGATTTTCATTTT+CGG - chr1_1:77805992-77806011 None:intergenic 20.0%
!! TGAAAATCATGGAAAAATAT+TGG + chr1_1:77805996-77806015 Msa0045810:intron 20.0%
!! GAAAATCATGGAAAAATATT+GGG + chr1_1:77805997-77806016 Msa0045810:intron 20.0%
!!! GATGTTTTTTTTATTGCTAA+TGG + chr1_1:77806118-77806137 Msa0045810:intron 20.0%
!! TATCATTATGTAGTATATGT+TGG - chr1_1:77806312-77806331 None:intergenic 20.0%
!! GATATTTAGATACATGAAAT+AGG - chr1_1:77806954-77806973 None:intergenic 20.0%
! TCTTTAACAAATGTCATATG+GGG + chr1_1:77803170-77803189 Msa0045810:intron 25.0%
! AAGTTCATCTATTAGTTAGA+GGG - chr1_1:77803262-77803281 None:intergenic 25.0%
! AAAGTTCATCTATTAGTTAG+AGG - chr1_1:77803263-77803282 None:intergenic 25.0%
! GATTATAGATAATTACAACG+AGG + chr1_1:77803395-77803414 Msa0045810:intron 25.0%
! TTAAGTATGTTTGATCTCAT+CGG - chr1_1:77804019-77804038 None:intergenic 25.0%
! CAATCCAATGCAAAATTTAA+CGG + chr1_1:77804520-77804539 Msa0045810:intron 25.0%
! TATTTACAGTCACATACAAT+AGG - chr1_1:77804643-77804662 None:intergenic 25.0%
! GTTGTTTAATAAAACCTCAA+GGG - chr1_1:77804748-77804767 None:intergenic 25.0%
!! TGTTGTTTAATAAAACCTCA+AGG - chr1_1:77804749-77804768 None:intergenic 25.0%
!!! TGTTTTTTTAAAACTAGAGG+GGG - chr1_1:77804778-77804797 None:intergenic 25.0%
!!! CTGTTTTTTTAAAACTAGAG+GGG - chr1_1:77804779-77804798 None:intergenic 25.0%
!!! GACTGTTTTTTTAAAACTAG+AGG - chr1_1:77804781-77804800 None:intergenic 25.0%
! TTACCTTAAATTCCTTTAAC+GGG + chr1_1:77804911-77804930 Msa0045810:intron 25.0%
! TTGAAATGAAAGTTACGTAA+TGG - chr1_1:77804940-77804959 None:intergenic 25.0%
!! CAAATGTAGAAAGTTTTTGT+TGG - chr1_1:77805307-77805326 None:intergenic 25.0%
! AAAAAAAAGAGGACATAACA+AGG + chr1_1:77805385-77805404 Msa0045810:intron 25.0%
! AATTTCAAGGGAAATATAGT+GGG + chr1_1:77805408-77805427 Msa0045810:intron 25.0%
!!! TTCTTCCTCAATTTTTGAAA+CGG - chr1_1:77805472-77805491 None:intergenic 25.0%
! TGTCTAATTAAAAATTGAGG+GGG + chr1_1:77805587-77805606 Msa0045810:intron 25.0%
!!! ATTTTAATAAACCTTAAGGG+AGG + chr1_1:77805620-77805639 Msa0045810:intron 25.0%
!! TCAACCTTTTAGATAAATCA+TGG - chr1_1:77805842-77805861 None:intergenic 25.0%
!! TTTTATTGCTAATGGTATGT+AGG + chr1_1:77806126-77806145 Msa0045810:intron 25.0%
! TTTATTGCTAATGGTATGTA+GGG + chr1_1:77806127-77806146 Msa0045810:intron 25.0%
! TTCCATAACATTATTGATGT+AGG + chr1_1:77806374-77806393 Msa0045810:intron 25.0%
! TTCCTACATCAATAATGTTA+TGG - chr1_1:77806379-77806398 None:intergenic 25.0%
! TTTATTGTCGACAAAAACTA+CGG + chr1_1:77806534-77806553 Msa0045810:intron 25.0%
! ACATGCTAACTATAATTCAT+TGG - chr1_1:77806576-77806595 None:intergenic 25.0%
! ATTTATATATGGGTGTGTTT+AGG + chr1_1:77806686-77806705 Msa0045810:intron 25.0%
! CATCGAATAAATTTCTCAAA+GGG - chr1_1:77806713-77806732 None:intergenic 25.0%
! ACATCGAATAAATTTCTCAA+AGG - chr1_1:77806714-77806733 None:intergenic 25.0%
! GAAATTTATTCGATGTACAA+AGG + chr1_1:77806718-77806737 Msa0045810:CDS 25.0%
! TGGAAAAAATTGAACCTTAA+AGG - chr1_1:77806864-77806883 None:intergenic 25.0%
! CTTATAATGTTTTCACTGCT+AGG + chr1_1:77802704-77802723 Msa0045810:intron 30.0%
CTGAACAATTCATAGTTCTT+TGG + chr1_1:77802991-77803010 Msa0045810:intron 30.0%
!! TGAATACACAGTTCTAAAGA+TGG - chr1_1:77803085-77803104 None:intergenic 30.0%
AACTCATATGGTGTTTAATC+TGG + chr1_1:77803360-77803379 Msa0045810:intron 30.0%
TTTAATCTGGTAAGTATGGT+GGG + chr1_1:77803373-77803392 Msa0045810:intron 30.0%
GTTTCGTGAGGAAATAATTT+GGG - chr1_1:77803906-77803925 None:intergenic 30.0%
TGTTTCGTGAGGAAATAATT+TGG - chr1_1:77803907-77803926 None:intergenic 30.0%
AAACTTACCTATCACTATCA+TGG + chr1_1:77803938-77803957 Msa0045810:intron 30.0%
!!! GCATGACTTTTTTAGTTGAA+TGG + chr1_1:77804089-77804108 Msa0045810:intron 30.0%
TAATATGAGGAAGATTTGTG+CGG - chr1_1:77804387-77804406 None:intergenic 30.0%
TCGTGAATGTTTCATGAATA+TGG + chr1_1:77804554-77804573 Msa0045810:intron 30.0%
AGGTAAAAATGCAAAAGCTA+CGG - chr1_1:77804897-77804916 None:intergenic 30.0%
AAACCCGTTAAAGGAATTTA+AGG - chr1_1:77804917-77804936 None:intergenic 30.0%
GACATAACAAGGAATTTCAA+GGG + chr1_1:77805396-77805415 Msa0045810:intron 30.0%
GAATTTCAAGGGAAATATAG+TGG + chr1_1:77805407-77805426 Msa0045810:intron 30.0%
! TCTTTCTTTTCTTTCTTCCA+CGG - chr1_1:77805439-77805458 None:intergenic 30.0%
ACAAGTGATTGAGTAGTATT+AGG - chr1_1:77805776-77805795 None:intergenic 30.0%
AGAGATCAATAAGTCATTAG+AGG - chr1_1:77805811-77805830 None:intergenic 30.0%
AACCCCTAAATCAAATATTG+AGG + chr1_1:77805906-77805925 Msa0045810:intron 30.0%
ACCCCTAAATCAAATATTGA+GGG + chr1_1:77805907-77805926 Msa0045810:intron 30.0%
! TCCCTCAATATTTGATTTAG+GGG - chr1_1:77805911-77805930 None:intergenic 30.0%
! GTCCCTCAATATTTGATTTA+GGG - chr1_1:77805912-77805931 None:intergenic 30.0%
! AGTCCCTCAATATTTGATTT+AGG - chr1_1:77805913-77805932 None:intergenic 30.0%
!!! TGATTGAAGCATTGCTTTTA+TGG + chr1_1:77806067-77806086 Msa0045810:intron 30.0%
TTTGTGAAGTTCACTGTATT+AGG + chr1_1:77806176-77806195 Msa0045810:CDS 30.0%
ACAACTGCAAATGCAATTTA+AGG + chr1_1:77806616-77806635 Msa0045810:intron 30.0%
TGTTCCTTCAGATTTCATAT+GGG - chr1_1:77806798-77806817 None:intergenic 30.0%
ATGTTCCTTCAGATTTCATA+TGG - chr1_1:77806799-77806818 None:intergenic 30.0%
ATGAAATCTGAAGGAACATA+TGG + chr1_1:77806800-77806819 Msa0045810:CDS 30.0%
AAACACCAAATGGAACATTA+GGG + chr1_1:77806909-77806928 Msa0045810:CDS 30.0%
! CTTCAGTATCGAATTTAGTG+AGG + chr1_1:77802791-77802810 Msa0045810:intron 35.0%
! TGAGGTACCAAAATCCTTAA+CGG + chr1_1:77802809-77802828 Msa0045810:intron 35.0%
! CAAAATCCTTAACGGCTTTT+CGG + chr1_1:77802817-77802836 Msa0045810:intron 35.0%
TTTCGGCCTTACAAAATGTT+AGG + chr1_1:77802834-77802853 Msa0045810:intron 35.0%
TTCGGCCTTACAAAATGTTA+GGG + chr1_1:77802835-77802854 Msa0045810:intron 35.0%
GAAATAGTGTTCCATCACAA+CGG + chr1_1:77802861-77802880 Msa0045810:intron 35.0%
AAATAGTGTTCCATCACAAC+GGG + chr1_1:77802862-77802881 Msa0045810:intron 35.0%
TATTCTATATCCCGTTGTGA+TGG - chr1_1:77802875-77802894 None:intergenic 35.0%
! CTTCCTTTGAAGAACTCATA+TGG + chr1_1:77803348-77803367 Msa0045810:intron 35.0%
ACACCATATGAGTTCTTCAA+AGG - chr1_1:77803354-77803373 None:intergenic 35.0%
GGTGTTTAATCTGGTAAGTA+TGG + chr1_1:77803369-77803388 Msa0045810:intron 35.0%
GTTTAATCTGGTAAGTATGG+TGG + chr1_1:77803372-77803391 Msa0045810:intron 35.0%
TGAAGACGTAAGCATGAAAT+AGG - chr1_1:77803541-77803560 None:intergenic 35.0%
TTATTTCCTCACGAAACATC+AGG + chr1_1:77803909-77803928 Msa0045810:intron 35.0%
AGTAGCGGTGAAAATAAGTT+CGG - chr1_1:77804209-77804228 None:intergenic 35.0%
! ACACACAAGTGTATTTGTTG+CGG + chr1_1:77804464-77804483 Msa0045810:intron 35.0%
TGAGCGGATCATGATAAAAA+GGG - chr1_1:77804494-77804513 None:intergenic 35.0%
ATGAGCGGATCATGATAAAA+AGG - chr1_1:77804495-77804514 None:intergenic 35.0%
CATTGGATTGAATACATGAG+CGG - chr1_1:77804510-77804529 None:intergenic 35.0%
! GAAGCCGTTAAATTTTGCAT+TGG - chr1_1:77804527-77804546 None:intergenic 35.0%
AATTATATTGACCTCCCTTG+AGG + chr1_1:77804731-77804750 Msa0045810:intron 35.0%
GTTTAATAAAACCTCAAGGG+AGG - chr1_1:77804745-77804764 None:intergenic 35.0%
CTAACACCGTTAACTTTGAA+GGG - chr1_1:77804808-77804827 None:intergenic 35.0%
ACTAACACCGTTAACTTTGA+AGG - chr1_1:77804809-77804828 None:intergenic 35.0%
TCATGTGCTAAGAAGTTAAG+AGG - chr1_1:77804874-77804893 None:intergenic 35.0%
!! GCTTACACAAACTTGTTGAA+AGG - chr1_1:77805003-77805022 None:intergenic 35.0%
TCATGTTATCTTATGCCCTA+AGG + chr1_1:77805187-77805206 Msa0045810:intron 35.0%
CATGTTATCTTATGCCCTAA+GGG + chr1_1:77805188-77805207 Msa0045810:intron 35.0%
!! ACACATTAACTTGTGCCTTA+AGG + chr1_1:77805327-77805346 Msa0045810:intron 35.0%
!! CACATTAACTTGTGCCTTAA+GGG + chr1_1:77805328-77805347 Msa0045810:intron 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG - chr1_1:77805345-77805364 None:intergenic 35.0%
GGACATAACAAGGAATTTCA+AGG + chr1_1:77805395-77805414 Msa0045810:intron 35.0%
TGCAAACAATGTAAACCAAG+AGG + chr1_1:77805523-77805542 Msa0045810:intron 35.0%
GCAAACAATGTAAACCAAGA+GGG + chr1_1:77805524-77805543 Msa0045810:intron 35.0%
CAAACAATGTAAACCAAGAG+GGG + chr1_1:77805525-77805544 Msa0045810:intron 35.0%
TATCACATTGAGGATTGAGT+AGG + chr1_1:77805555-77805574 Msa0045810:intron 35.0%
ATCACATTGAGGATTGAGTA+GGG + chr1_1:77805556-77805575 Msa0045810:intron 35.0%
!! TGTGGCTCTATCAATTTTGA+TGG - chr1_1:77805671-77805690 None:intergenic 35.0%
ACTGCCGAAAATGAAAATCA+TGG + chr1_1:77805985-77806004 Msa0045810:intron 35.0%
TAATGGTATGTAGGGTTAGA+GGG + chr1_1:77806135-77806154 Msa0045810:intron 35.0%
GTTAGAGGGTTAGATATTGA+TGG + chr1_1:77806149-77806168 Msa0045810:CDS 35.0%
CACTGTATTAGGAGTTTACT+TGG + chr1_1:77806187-77806206 Msa0045810:CDS 35.0%
AGGAGTTTACTTGGAAGAAA+AGG + chr1_1:77806196-77806215 Msa0045810:CDS 35.0%
GATATCTCGGTAGAAATCAA+GGG - chr1_1:77806279-77806298 None:intergenic 35.0%
TGATATCTCGGTAGAAATCA+AGG - chr1_1:77806280-77806299 None:intergenic 35.0%
TTCTACCGAGATATCATCAA+AGG + chr1_1:77806284-77806303 Msa0045810:CDS 35.0%
! TGGTACCTTTGATGATATCT+CGG - chr1_1:77806292-77806311 None:intergenic 35.0%
CTTGCACATATACTGTTGAA+TGG + chr1_1:77806503-77806522 Msa0045810:intron 35.0%
AGGTAGTGAATATGTGAGAA+AGG + chr1_1:77806754-77806773 Msa0045810:CDS 35.0%
ATTGCCCATATGAAATCTGA+AGG + chr1_1:77806791-77806810 Msa0045810:CDS 35.0%
AGAACTTAGAGAAGCCTTTA+AGG + chr1_1:77806847-77806866 Msa0045810:CDS 35.0%
!!! AAGGTTCAATTTTTTCCACC+AGG + chr1_1:77806866-77806885 Msa0045810:CDS 35.0%
!!! AGGTTCAATTTTTTCCACCA+GGG + chr1_1:77806867-77806886 Msa0045810:CDS 35.0%
TTCTTCAGACAAACACCAAA+TGG + chr1_1:77806899-77806918 Msa0045810:CDS 35.0%
CAAACACCAAATGGAACATT+AGG + chr1_1:77806908-77806927 Msa0045810:CDS 35.0%
AACACCAAATGGAACATTAG+GGG + chr1_1:77806910-77806929 Msa0045810:CDS 35.0%
! TTCAGGTATTGTCTCATCTT+TGG - chr1_1:77807037-77807056 None:intergenic 35.0%
ATAACAGCATACTCATGTTC+AGG - chr1_1:77807054-77807073 None:intergenic 35.0%
! TATAAACAACAAGCCGCTTT+CGG + chr1_1:77807071-77807090 Msa0045810:CDS 35.0%
AAGATTGACGACTTCAACAT+TGG + chr1_1:77807180-77807199 Msa0045810:CDS 35.0%
GGTGGAGTTCATTGAATTTC+CGG + chr1_1:77802589-77802608 Msa0045810:CDS 40.0%
!! AAATAGGACTTGGTGGATGA+TGG - chr1_1:77802629-77802648 None:intergenic 40.0%
TGACAGAATTTATGTGCGTC+GGG - chr1_1:77802762-77802781 None:intergenic 40.0%
GTGACAGAATTTATGTGCGT+CGG - chr1_1:77802763-77802782 None:intergenic 40.0%
! CGAAAAGCCGTTAAGGATTT+TGG - chr1_1:77802819-77802838 None:intergenic 40.0%
GCCTTACAAAATGTTAGGGA+GGG + chr1_1:77802839-77802858 Msa0045810:intron 40.0%
! TCCCTCCCTAACATTTTGTA+AGG - chr1_1:77802843-77802862 None:intergenic 40.0%
! AGAGGGAGTCAGTGAATTTT+AGG - chr1_1:77803245-77803264 None:intergenic 40.0%
! CACACAAGTGTATTTGTTGC+GGG + chr1_1:77804465-77804484 Msa0045810:intron 40.0%
GAGCGGATCATGATAAAAAG+GGG - chr1_1:77804493-77804512 None:intergenic 40.0%
TCACCTCCCTTCAAAGTTAA+CGG + chr1_1:77804799-77804818 Msa0045810:intron 40.0%
! ACGTAATGGAAACCCGTTAA+AGG - chr1_1:77804926-77804945 None:intergenic 40.0%
AGAGGGGAAATGAATTCGTT+TGG - chr1_1:77805055-77805074 None:intergenic 40.0%
GCAAAACTATGGTACTAGAG+GGG - chr1_1:77805071-77805090 None:intergenic 40.0%
GGCAAAACTATGGTACTAGA+GGG - chr1_1:77805072-77805091 None:intergenic 40.0%
TGGCAAAACTATGGTACTAG+AGG - chr1_1:77805073-77805092 None:intergenic 40.0%
!! CAAAGTGTTGTCACTACAGA+AGG - chr1_1:77805103-77805122 None:intergenic 40.0%
CTTCTGTAGTGACAACACTT+TGG + chr1_1:77805101-77805120 Msa0045810:intron 40.0%
TTGCTTAACATGTGCCCTTA+GGG - chr1_1:77805205-77805224 None:intergenic 40.0%
! TTCAAGGGAAATATAGTGGG+TGG + chr1_1:77805411-77805430 Msa0045810:intron 40.0%
! TGCTGCCGTTTCAAAAATTG+AGG + chr1_1:77805464-77805483 Msa0045810:intron 40.0%
TCACATTGAGGATTGAGTAG+GGG + chr1_1:77805557-77805576 Msa0045810:intron 40.0%
! AATTGCATTGACCTCCCTTA+AGG - chr1_1:77805634-77805653 None:intergenic 40.0%
CTAATGGTATGTAGGGTTAG+AGG + chr1_1:77806134-77806153 Msa0045810:intron 40.0%
TAGCATCACTTACTCCTAAG+TGG + chr1_1:77806222-77806241 Msa0045810:CDS 40.0%
ATCACTTACTCCTAAGTGGA+AGG + chr1_1:77806226-77806245 Msa0045810:CDS 40.0%
TCACTTACTCCTAAGTGGAA+GGG + chr1_1:77806227-77806246 Msa0045810:CDS 40.0%
ACAAAGGTGAGAACACTAGA+AGG + chr1_1:77806734-77806753 Msa0045810:CDS 40.0%
GGCTTCTCTAAGTTCTTGAA+TGG - chr1_1:77806843-77806862 None:intergenic 40.0%
!!! GGTTCAATTTTTTCCACCAG+GGG + chr1_1:77806868-77806887 Msa0045810:CDS 40.0%
CTAACCCCTAATGTTCCATT+TGG - chr1_1:77806917-77806936 None:intergenic 40.0%
ATCCATGATCACTGGAGTGA+AGG + chr1_1:77802568-77802587 Msa0045810:CDS 45.0%
GTTCATTGAATTTCCGGCAG+TGG + chr1_1:77802595-77802614 Msa0045810:CDS 45.0%
TCCACCAAGTCCTATTTCCT+TGG + chr1_1:77802632-77802651 Msa0045810:intron 45.0%
ACCAAGGAAATAGGACTTGG+TGG - chr1_1:77802636-77802655 None:intergenic 45.0%
ACCAAGTCCTATTTCCTTGG+TGG + chr1_1:77802635-77802654 Msa0045810:intron 45.0%
ACCACCAAGGAAATAGGACT+TGG - chr1_1:77802639-77802658 None:intergenic 45.0%
AAGAAATACCTGCACCACCA+AGG - chr1_1:77802652-77802671 None:intergenic 45.0%
GACAGAATTTATGTGCGTCG+GGG - chr1_1:77802761-77802780 None:intergenic 45.0%
GGCCTTACAAAATGTTAGGG+AGG + chr1_1:77802838-77802857 Msa0045810:intron 45.0%
! CCACACACCATGATAGTGAT+AGG - chr1_1:77803948-77803967 None:intergenic 45.0%
CCTATCACTATCATGGTGTG+TGG + chr1_1:77803945-77803964 Msa0045810:intron 45.0%
!!! TTGTGCGGTGCTACAGTTTT+GGG - chr1_1:77804372-77804391 None:intergenic 45.0%
!!! TTTGTGCGGTGCTACAGTTT+TGG - chr1_1:77804373-77804392 None:intergenic 45.0%
! ACACCGTTAACTTTGAAGGG+AGG - chr1_1:77804805-77804824 None:intergenic 45.0%
GTTGCTTAACATGTGCCCTT+AGG - chr1_1:77805206-77805225 None:intergenic 45.0%
!! AAATATAGTGGGTGGAACCG+TGG + chr1_1:77805419-77805438 Msa0045810:intron 45.0%
ACAATGTAAACCAAGAGGGG+AGG + chr1_1:77805528-77805547 Msa0045810:intron 45.0%
!! GGGAGGTGTTTATCACATTG+AGG + chr1_1:77805545-77805564 Msa0045810:intron 45.0%
CCACTGCATATGCACTTATG+TGG - chr1_1:77805689-77805708 None:intergenic 45.0%
CCACATAAGTGCATATGCAG+TGG + chr1_1:77805686-77805705 Msa0045810:intron 45.0%
AGGGATTCAAAGAGCTGAGA+TGG - chr1_1:77806260-77806279 None:intergenic 45.0%
AACAGGAATTTCTCCGGTCA+TGG - chr1_1:77807112-77807131 None:intergenic 45.0%
AGGCGAAACAGGAATTTCTC+CGG - chr1_1:77807118-77807137 None:intergenic 45.0%
TCTTTCAAAGCAGGCGAAAC+AGG - chr1_1:77807129-77807148 None:intergenic 45.0%
!! GCCTGCTTTGAAAGAGAGTT+TGG + chr1_1:77807134-77807153 Msa0045810:CDS 45.0%
GCCAAACTCTCTTTCAAAGC+AGG - chr1_1:77807138-77807157 None:intergenic 45.0%
!! TAAAAATATATAATTGAAAT+AGG - chr1_1:77803670-77803689 None:intergenic 5.0%
!!! TTTATTTTTTAAAAAAAACA+TGG + chr1_1:77804144-77804163 Msa0045810:intron 5.0%
!! ATAATAATAATAAAAAAAAG+AGG + chr1_1:77805374-77805393 Msa0045810:intron 5.0%
!!! GATTTTTTTATTTTTTTTTT+AGG - chr1_1:77805734-77805753 None:intergenic 5.0%
!! AAAAAATAAAACAAATTATT+AGG - chr1_1:77806342-77806361 None:intergenic 5.0%
CACCTTCACTCCAGTGATCA+TGG - chr1_1:77802573-77802592 None:intergenic 50.0%
CATGATCACTGGAGTGAAGG+TGG + chr1_1:77802571-77802590 Msa0045810:CDS 50.0%
!! TAGGACTTGGTGGATGATGG+AGG - chr1_1:77802626-77802645 None:intergenic 50.0%
!! TCCTATTTCCTTGGTGGTGC+AGG + chr1_1:77802641-77802660 Msa0045810:intron 50.0%
ACCTGCACCACCAAGGAAAT+AGG - chr1_1:77802645-77802664 None:intergenic 50.0%
GTAAGGCCGAAAAGCCGTTA+AGG - chr1_1:77802826-77802845 None:intergenic 50.0%
TCGAGTCCTGATGTTTCGTG+AGG - chr1_1:77803918-77803937 None:intergenic 50.0%
TACTCTCCTGAGAGAGGTTG+TGG - chr1_1:77804437-77804456 None:intergenic 50.0%
TCGTGATACTCTCCTGAGAG+AGG - chr1_1:77804443-77804462 None:intergenic 50.0%
GGCGCATGATGGCAAAACTA+TGG - chr1_1:77805082-77805101 None:intergenic 50.0%
! TCACTACAGAAGGCGCATGA+TGG - chr1_1:77805093-77805112 None:intergenic 50.0%
GTGATAAACACCTCCCCTCT+TGG - chr1_1:77805541-77805560 None:intergenic 50.0%
CATTGAGGATTGAGTAGGGG+AGG + chr1_1:77805560-77805579 Msa0045810:intron 50.0%
!!! CAATTTTTTCCACCAGGGGC+TGG + chr1_1:77806872-77806891 Msa0045810:CDS 50.0%
! AAACAACAAGCCGCTTTCGG+AGG + chr1_1:77807074-77807093 Msa0045810:CDS 50.0%
GCAGCAGCATCCATGATCAC+TGG + chr1_1:77802560-77802579 Msa0045810:CDS 55.0%
ATGTCGCCACAACCTCTCTC+AGG + chr1_1:77804428-77804447 Msa0045810:intron 55.0%
GGAGTCTTGCCCTTCCACTT+AGG - chr1_1:77806239-77806258 None:intergenic 55.0%
AAGAAAACACCAGCCCCTGG+TGG - chr1_1:77806884-77806903 None:intergenic 55.0%
CTGAAGAAAACACCAGCCCC+TGG - chr1_1:77806887-77806906 None:intergenic 55.0%
TCCAACACTGCCTCCGAAAG+CGG - chr1_1:77807087-77807106 None:intergenic 55.0%
! GCAGTGTTGGAGACCATGAC+CGG + chr1_1:77807096-77807115 Msa0045810:CDS 55.0%
!! GATGGAGGTGTCACCACTGC+CGG - chr1_1:77802611-77802630 None:intergenic 60.0%
! GCCGCTTTCGGAGGCAGTGT+TGG + chr1_1:77807083-77807102 Msa0045810:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 77802551 77807209 77802551 ID=Msa0045810;Name=Msa0045810
chr1_1 mRNA 77802551 77807209 77802551 ID=Msa0045810-mRNA-1;Parent=Msa0045810;Name=Msa0045810-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|4|0|218
chr1_1 exon 77802551 77802639 77802551 ID=Msa0045810-mRNA-1:exon:26655;Parent=Msa0045810-mRNA-1
chr1_1 exon 77806148 77806305 77806148 ID=Msa0045810-mRNA-1:exon:26656;Parent=Msa0045810-mRNA-1
chr1_1 exon 77806708 77806931 77806708 ID=Msa0045810-mRNA-1:exon:26657;Parent=Msa0045810-mRNA-1
chr1_1 exon 77807024 77807209 77807024 ID=Msa0045810-mRNA-1:exon:26658;Parent=Msa0045810-mRNA-1
chr1_1 CDS 77802551 77802639 77802551 ID=Msa0045810-mRNA-1:cds;Parent=Msa0045810-mRNA-1
chr1_1 CDS 77806148 77806305 77806148 ID=Msa0045810-mRNA-1:cds;Parent=Msa0045810-mRNA-1
chr1_1 CDS 77806708 77806931 77806708 ID=Msa0045810-mRNA-1:cds;Parent=Msa0045810-mRNA-1
chr1_1 CDS 77807024 77807209 77807024 ID=Msa0045810-mRNA-1:cds;Parent=Msa0045810-mRNA-1
Gene Sequence

>Msa0045810

ATGGCAAAGGCAGCAGCATCCATGATCACTGGAGTGAAGGTGGAGTTCATTGAATTTCCGGCAGTGGTGACACCTCCATCATCCACCAAGGTTAGAGGGTTAGATATTGATGGAGAGTTTGTGAAGTTCACTGTATTAGGAGTTTACTTGGAAGAAAAGGCTATAGCATCACTTACTCCTAAGTGGAAGGGCAAGACTCCATCTCAGCTCTTTGAATCCCTTGATTTCTACCGAGATATCATCAAAGGTCCCTTTGAGAAATTTATTCGATGTACAAAGGTGAGAACACTAGAAGGTAGTGAATATGTGAGAAAGGTATCAGAAAATTGCATTGCCCATATGAAATCTGAAGGAACATATGGCGATGCAGAAGAAAAAGCCATTCAAGAACTTAGAGAAGCCTTTAAGGTTCAATTTTTTCCACCAGGGGCTGGTGTTTTCTTCAGACAAACACCAAATGGAACATTAGGGCTTAGATTCTCCAAAGATGAGACAATACCTGAACATGAGTATGCTGTTATAAACAACAAGCCGCTTTCGGAGGCAGTGTTGGAGACCATGACCGGAGAAATTCCTGTTTCGCCTGCTTTGAAAGAGAGTTTGGCTACAAGATTTTGTGAGTTTATGAAGATTGACGACTTCAACATTGGAAACTGA

Protein sequence

>Msa0045810

MAKAAASMITGVKVEFIEFPAVVTPPSSTKVRGLDIDGEFVKFTVLGVYLEEKAIASLTPKWKGKTPSQLFESLDFYRDIIKGPFEKFIRCTKVRTLEGSEYVRKVSENCIAHMKSEGTYGDAEEKAIQELREAFKVQFFPPGAGVFFRQTPNGTLGLRFSKDETIPEHEYAVINNKPLSEAVLETMTGEIPVSPALKESLATRFCEFMKIDDFNIGN*