AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0062190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0062190 MtrunA17_Chr1g0162571 96.082 485 19 0 1 485 1 485 0.0 936
Msa0062190 MtrunA17_Chr4g0034141 65.567 485 163 3 1 485 1 481 0.0 671
Msa0062190 MtrunA17_Chr3g0141271 53.376 474 212 7 13 482 89 557 2.78e-176 506
Msa0062190 MtrunA17_Chr1g0154381 50.000 478 231 6 8 483 52 523 7.41e-171 491
Msa0062190 MtrunA17_Chr1g0162581 82.470 251 40 1 1 247 1 251 1.22e-152 434
Msa0062190 MtrunA17_Chr1g0162591 81.818 242 44 0 244 485 3 244 5.34e-148 422
Msa0062190 MtrunA17_Chr2g0322321 38.397 474 271 8 14 482 22 479 2.34e-105 322
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0062190 AT5G42650.1 50.000 474 230 5 12 483 49 517 4.12e-169 487
Msa0062190 AT4G15440.1 40.153 391 221 5 94 482 4 383 1.41e-87 273

Find 94 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATTGAAGATGGGCTTTC+TGG 0.162729 1_2:+21418754 Msa0062190:CDS
CTTGCTCCACTTGCAACTTT+AGG 0.254713 1_2:+21418925 Msa0062190:CDS
TCAAGATAATTGAAAATCTT+AGG 0.276501 1_2:-21418952 None:intergenic
TTGTGGCGAAAAGGTTTGTT+GGG 0.354191 1_2:+21420665 Msa0062190:CDS
TGCTATGACTCTTGGGTTTG+AGG 0.356639 1_2:-21418491 None:intergenic
TTCATAGAGCTTCTTGTAAG+AGG 0.382252 1_2:-21420200 None:intergenic
GTCCTAAAATGTTTGATACT+TGG 0.383207 1_2:+21418890 Msa0062190:CDS
GGATTGGGAATTGATTCTTT+AGG 0.384415 1_2:-21420336 None:intergenic
AGAAGAATTTGTCTCTTCCT+TGG 0.393328 1_2:-21418402 None:intergenic
CCAATCCTCTTCAAATGGTT+AGG 0.410637 1_2:+21420352 Msa0062190:CDS
CCTAACCATTTGAAGAGGAT+TGG 0.428897 1_2:-21420352 None:intergenic
TCTAAAAGTGCTATGACTCT+TGG 0.437203 1_2:-21418499 None:intergenic
CTTTCGCCACAAAAGATCCT+AGG 0.437991 1_2:+21420620 Msa0062190:CDS
TTTGTGGCGAAAAGGTTTGT+TGG 0.438388 1_2:+21420664 Msa0062190:CDS
CTAACCATTTGAAGAGGATT+GGG 0.438902 1_2:-21420351 None:intergenic
TATATGTAATTAACAAAGAA+TGG 0.442488 1_2:-21421002 None:intergenic
CTAAAAGTGCTATGACTCTT+GGG 0.446715 1_2:-21418498 None:intergenic
CCTTTCCTGCTTGTTTGACA+AGG 0.452440 1_2:+21418998 Msa0062190:CDS
AATTCCCAATCCTCTTCAAA+TGG 0.458136 1_2:+21420347 Msa0062190:CDS
AAAGGGAGGCCATAGCTGCC+TGG 0.458877 1_2:-21418340 None:intergenic
TTTAAGACTATTCTTTCTGA+TGG 0.463911 1_2:+21418724 Msa0062190:CDS
CCTTTGATAAGTGCATGGTT+TGG 0.464225 1_2:-21418652 None:intergenic
CAAAGATCGGTCCGATGAAA+GGG 0.467580 1_2:-21418357 None:intergenic
GCGGAGAATAAGCAATGTCC+TGG 0.477764 1_2:+21420751 Msa0062190:CDS
AAACAAATCCCAGGCAGCTA+TGG 0.478988 1_2:+21418331 Msa0062190:CDS
TCTTGGGTTTGAGGAAATGA+AGG 0.480085 1_2:-21418482 None:intergenic
GCATATTGATAAGGCACAGC+AGG 0.481391 1_2:-21420514 None:intergenic
TCAAAGATCGGTCCGATGAA+AGG 0.483475 1_2:-21418358 None:intergenic
CCTTGTCAAACAAGCAGGAA+AGG 0.488909 1_2:-21418998 None:intergenic
TAGTGGTAGCTCTTTGTTGG+TGG 0.491751 1_2:-21418308 None:intergenic
GGTTTGGTTCGGTTGTGTCT+AGG 0.494914 1_2:-21418636 None:intergenic
TTTGTGTAGATTGTTATTGG+TGG 0.498822 1_2:+21420792 Msa0062190:CDS
GAAACTATCCTTGGTGATCA+AGG 0.500468 1_2:+21418868 Msa0062190:CDS
GATAAGTGCATGGTTTGGTT+CGG 0.507952 1_2:-21418647 None:intergenic
GCACAACATTCCACTCCTAA+AGG 0.509564 1_2:-21420957 None:intergenic
AACCCTTCTGAAACTATCCT+TGG 0.510155 1_2:+21418859 Msa0062190:CDS
TTCAGAACCAACATGCCTCC+AGG 0.517385 1_2:+21418457 Msa0062190:CDS
AATTCAAACACTAGAAGCCT+TGG 0.519083 1_2:-21420896 None:intergenic
GATGGGCTTTCTGGTAAAAG+TGG 0.524979 1_2:+21418763 Msa0062190:CDS
CATTGCTTATTCTCCGCTGA+AGG 0.529891 1_2:-21420745 None:intergenic
AGCTATGGCCTCCCTTTCAT+CGG 0.539465 1_2:+21418346 Msa0062190:CDS
TAGACAACTGATTTAACTAA+CGG 0.540239 1_2:-21420472 None:intergenic
TGGGGTAACAATTCAGTCGT+TGG 0.540395 1_2:+21420441 Msa0062190:CDS
AAGGGAGGCCATAGCTGCCT+GGG 0.542022 1_2:-21418339 None:intergenic
TAGTCGTGTCGGTCAAAGAT+CGG 0.543279 1_2:-21418370 None:intergenic
ACCGCAGGCTTCAACGCATA+CGG 0.548311 1_2:+21420310 Msa0062190:CDS
CTTGTCAAACAAGCAGGAAA+GGG 0.552808 1_2:-21418997 None:intergenic
GAAAGAATAGTCTTAAAGAG+AGG 0.553532 1_2:-21418718 None:intergenic
GCGAAAAGGTTTGTTGGGGA+AGG 0.554378 1_2:+21420670 Msa0062190:CDS
AAAGAATAGTCTTAAAGAGA+GGG 0.555358 1_2:-21418717 None:intergenic
CCAAACCATGCACTTATCAA+AGG 0.565220 1_2:+21418652 Msa0062190:CDS
CACGACTACTTCTACAACCA+AGG 0.569461 1_2:+21418385 Msa0062190:CDS
AGCCTTGGTGAGTGAAGTAA+TGG 0.570221 1_2:-21420881 None:intergenic
AGAAACCTTTGATAAGTGCA+TGG 0.573003 1_2:-21418657 None:intergenic
TTTCGCCACAAAAGATCCTA+GGG 0.574619 1_2:+21420621 Msa0062190:CDS
TCTCACCTTGTCAAACAAGC+AGG 0.589767 1_2:-21419003 None:intergenic
ACGAACCTAACCATTTGAAG+AGG 0.591274 1_2:-21420357 None:intergenic
TCAATATGCAAAAGCAAGAG+AGG 0.593501 1_2:+21420528 Msa0062190:CDS
GAAGGGACCTGGAGGCATGT+TGG 0.593712 1_2:-21418464 None:intergenic
TCACCAAGGATAGTTTCAGA+AGG 0.597461 1_2:-21418862 None:intergenic
AGCACAACAAGATTCTTCCC+AGG 0.597965 1_2:-21420769 None:intergenic
TCAGGATCATCGAAAACCCT+AGG 0.598482 1_2:-21420637 None:intergenic
CACCAAGGATAGTTTCAGAA+GGG 0.600780 1_2:-21418861 None:intergenic
AGATAATTGAAAATCTTAGG+AGG 0.601465 1_2:-21418949 None:intergenic
CCGTGGTAAAACAAGAAGGT+GGG 0.607824 1_2:+21420422 Msa0062190:CDS
TTTGAGGAAATGAAGGGACC+TGG 0.609736 1_2:-21418475 None:intergenic
AGCACATACACGGTAACCAC+CGG 0.615577 1_2:-21418611 None:intergenic
ATCAAGAGTTTCATCAACCA+TGG 0.616420 1_2:+21418261 Msa0062190:exon
TTCAAATGGTTAGGTTCGTG+CGG 0.618289 1_2:+21420361 Msa0062190:CDS
TACCATTACTTCACTCACCA+AGG 0.619737 1_2:+21420879 Msa0062190:CDS
GGAGGTCCTAAAGTTGCAAG+TGG 0.621056 1_2:-21418931 None:intergenic
GGTGAAAATGATATTGTGGC+AGG 0.623250 1_2:-21420290 None:intergenic
AGAACCGTGGTAAAACAAGA+AGG 0.625421 1_2:+21420418 Msa0062190:CDS
TGTGGCGAAAAGGTTTGTTG+GGG 0.625982 1_2:+21420666 Msa0062190:CDS
CGGAGAATAAGCAATGTCCT+GGG 0.627055 1_2:+21420752 Msa0062190:CDS
CTTGGGTTTGAGGAAATGAA+GGG 0.627221 1_2:-21418481 None:intergenic
CGTGGTAAAACAAGAAGGTG+GGG 0.636206 1_2:+21420423 Msa0062190:CDS
ACCGTATGCGTTGAAGCCTG+CGG 0.636771 1_2:-21420311 None:intergenic
AGATCGGTCCGATGAAAGGG+AGG 0.641720 1_2:-21418354 None:intergenic
ATGCCGTCGACAAAATTCAC+CGG 0.643799 1_2:+21418592 Msa0062190:CDS
GGTTGTAGAAGTAGTCGTGT+CGG 0.648313 1_2:-21418381 None:intergenic
TAAGAGGATCGGGAAAGATG+CGG 0.650596 1_2:-21418524 None:intergenic
AGAAACTGAAGAGCCTTCAG+CGG 0.651912 1_2:+21420732 Msa0062190:CDS
ACGGCATGTAAGTGCCGTCG+AGG 0.653207 1_2:-21418576 None:intergenic
ACCGTGGTAAAACAAGAAGG+TGG 0.653762 1_2:+21420421 Msa0062190:CDS
CTACCACTAAAACAAATCCC+AGG 0.662652 1_2:+21418322 Msa0062190:CDS
CTGCGGTGAAAATGATATTG+TGG 0.674126 1_2:-21420294 None:intergenic
GAGGAAATGAAGGGACCTGG+AGG 0.681898 1_2:-21418472 None:intergenic
CCGTCGACAAAATTCACCGG+TGG 0.696972 1_2:+21418595 Msa0062190:CDS
TGTCTAGGTAAGCACATACA+CGG 0.697884 1_2:-21418621 None:intergenic
GCAGGCTTCAACGCATACGG+TGG 0.702595 1_2:+21420313 Msa0062190:CDS
AGAGATACACAAAGAACTCG+CGG 0.711179 1_2:+21420387 Msa0062190:CDS
CGCGGACGAGATAAGAACCG+TGG 0.717719 1_2:+21420405 Msa0062190:CDS
AATTGTGAAGAGTCATGACG+CGG 0.724232 1_2:+21420555 Msa0062190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTATCAACATATAAT+TGG - chr1_2:21419181-21419200 None:intergenic 10.0%
!!! AGATTTTTTTTTTTTACTTT+TGG + chr1_2:21419451-21419470 Msa0062190:intron 10.0%
!!! GATTTTTTTTTTTTACTTTT+GGG + chr1_2:21419452-21419471 Msa0062190:intron 10.0%
!!! TCACATTTTTTTTTTTTTTT+TGG - chr1_2:21419721-21419740 None:intergenic 10.0%
!! AAAAAAAAAAAAATGTGATA+TGG + chr1_2:21419723-21419742 Msa0062190:intron 10.0%
!!! AAATTAATTGTTCTTTTTTT+GGG + chr1_2:21419802-21419821 Msa0062190:intron 10.0%
!!! ATCAAAATCTAAATATTTTA+AGG + chr1_2:21420075-21420094 Msa0062190:intron 10.0%
!!! ATATTTTTTTATGGGTTAAT+TGG - chr1_2:21418243-21418262 None:intergenic 15.0%
!!! AACTCTTGATATTTTTTTAT+GGG - chr1_2:21418251-21418270 None:intergenic 15.0%
!!! AAACTCTTGATATTTTTTTA+TGG - chr1_2:21418252-21418271 None:intergenic 15.0%
!!! AAAGAGTGAATATTTTATTA+AGG + chr1_2:21419303-21419322 Msa0062190:intron 15.0%
!!! GAAATTAATTGTTCTTTTTT+TGG + chr1_2:21419801-21419820 Msa0062190:intron 15.0%
!!! CTTTGTTGTTTTTATAATTA+TGG + chr1_2:21419858-21419877 Msa0062190:intron 15.0%
!! TATATGTAATTAACAAAGAA+TGG - chr1_2:21421005-21421024 None:intergenic 15.0%
!!! AGATTGTTGAATTGTATTTT+TGG - chr1_2:21418438-21418457 None:intergenic 20.0%
!! TCAAGATAATTGAAAATCTT+AGG - chr1_2:21418955-21418974 None:intergenic 20.0%
!! CAAATGCTACAATTAAAAAT+TGG - chr1_2:21419242-21419261 None:intergenic 20.0%
!!! ACTCATTAACTTGATTTTTA+AGG - chr1_2:21419347-21419366 None:intergenic 20.0%
!! AACTAATAACTAAAAAGCAA+TGG + chr1_2:21419616-21419635 Msa0062190:intron 20.0%
!! AAAAAGTGAAAACTATATTG+TGG + chr1_2:21419673-21419692 Msa0062190:intron 20.0%
!! AAAATGTGATATGGTTATTA+CGG + chr1_2:21419732-21419751 Msa0062190:intron 20.0%
!!! CATGATTTTGATCTTAAATA+AGG - chr1_2:21419945-21419964 None:intergenic 20.0%
!!! CATGAATCTAAATTTTACTT+TGG - chr1_2:21420052-21420071 None:intergenic 20.0%
!! TCTCTAACATTAAATTGTTA+CGG + chr1_2:21420171-21420190 Msa0062190:intron 20.0%
!!! TTTTTATGGGTTAATTGGTT+TGG - chr1_2:21418238-21418257 None:intergenic 25.0%
!! AAAGAATAGTCTTAAAGAGA+GGG - chr1_2:21418720-21418739 None:intergenic 25.0%
!! TTTAAGACTATTCTTTCTGA+TGG + chr1_2:21418724-21418743 Msa0062190:CDS 25.0%
!!! GTTTTAATGAGATTGAAGAT+GGG + chr1_2:21418746-21418765 Msa0062190:CDS 25.0%
!!! TTTTAACTCTATTATGAGTG+TGG + chr1_2:21418795-21418814 Msa0062190:CDS 25.0%
!! AACCAAGTATCAAACATTTT+AGG - chr1_2:21418895-21418914 None:intergenic 25.0%
! AGATAATTGAAAATCTTAGG+AGG - chr1_2:21418952-21418971 None:intergenic 25.0%
! CAAAAAGATCCTATGTTTAA+GGG - chr1_2:21419040-21419059 None:intergenic 25.0%
! AAAATCAAGTTAATGAGTCA+AGG + chr1_2:21419349-21419368 Msa0062190:intron 25.0%
! GAAAAACTCAGCTTAATAAA+GGG - chr1_2:21419517-21419536 None:intergenic 25.0%
! AGAAAAACTCAGCTTAATAA+AGG - chr1_2:21419518-21419537 None:intergenic 25.0%
!! AGTTTAAAGTAGTAAGTTTG+TGG + chr1_2:21419566-21419585 Msa0062190:intron 25.0%
! CAAACATAATAATGATGTCT+AGG + chr1_2:21420011-21420030 Msa0062190:intron 25.0%
!! TAGACAACTGATTTAACTAA+CGG - chr1_2:21420475-21420494 None:intergenic 25.0%
! AAAAAGGGTGAAATGATATT+TGG + chr1_2:21420589-21420608 Msa0062190:CDS 25.0%
!! TTTTTGTTGTCTAAGAGGAT+CGG - chr1_2:21418538-21418557 None:intergenic 30.0%
! GAAAGAATAGTCTTAAAGAG+AGG - chr1_2:21418721-21418740 None:intergenic 30.0%
!! GGTTTTAATGAGATTGAAGA+TGG + chr1_2:21418745-21418764 Msa0062190:CDS 30.0%
GTCCTAAAATGTTTGATACT+TGG + chr1_2:21418890-21418909 Msa0062190:CDS 30.0%
! TGAAGATATTTTGCTACGTA+CGG + chr1_2:21418972-21418991 Msa0062190:CDS 30.0%
CCAAAAAGATCCTATGTTTA+AGG - chr1_2:21419041-21419060 None:intergenic 30.0%
! CCTTAAACATAGGATCTTTT+TGG + chr1_2:21419038-21419057 Msa0062190:intron 30.0%
ATTGTGGTGAAAATGTGATA+TGG + chr1_2:21419689-21419708 Msa0062190:intron 30.0%
!! CTTGCTTTTGCATATTGATA+AGG - chr1_2:21420526-21420545 None:intergenic 30.0%
! AGTTGTTGAAGTATGTTTTG+TGG + chr1_2:21420698-21420717 Msa0062190:CDS 30.0%
! AAGTATGTTTTGTGGTCTAA+TGG + chr1_2:21420706-21420725 Msa0062190:CDS 30.0%
! AGTATGTTTTGTGGTCTAAT+GGG + chr1_2:21420707-21420726 Msa0062190:CDS 30.0%
! GCTTTTGTGTAGATTGTTAT+TGG + chr1_2:21420789-21420808 Msa0062190:CDS 30.0%
! TTTGTGTAGATTGTTATTGG+TGG + chr1_2:21420792-21420811 Msa0062190:CDS 30.0%
!!! TCTTGTTTTGTTCTTCCTTT+AGG + chr1_2:21420942-21420961 Msa0062190:three_prime_UTR 30.0%
ATCAAGAGTTTCATCAACCA+TGG + chr1_2:21418261-21418280 Msa0062190:exon 35.0%
!!! TTCTTGTTTTGAAGATGCCA+TGG - chr1_2:21418281-21418300 None:intergenic 35.0%
! TTTTAGTGGTAGCTCTTTGT+TGG - chr1_2:21418314-21418333 None:intergenic 35.0%
AGAAGAATTTGTCTCTTCCT+TGG - chr1_2:21418405-21418424 None:intergenic 35.0%
!! CTAAAAGTGCTATGACTCTT+GGG - chr1_2:21418501-21418520 None:intergenic 35.0%
!! TCTAAAAGTGCTATGACTCT+TGG - chr1_2:21418502-21418521 None:intergenic 35.0%
!! TTTTGTTGTCTAAGAGGATC+GGG - chr1_2:21418537-21418556 None:intergenic 35.0%
!!! CGACTTTTTTGTTGTCTAAG+AGG - chr1_2:21418543-21418562 None:intergenic 35.0%
AGAAACCTTTGATAAGTGCA+TGG - chr1_2:21418660-21418679 None:intergenic 35.0%
AACATTAAATTGTTACGGCC+AGG + chr1_2:21420176-21420195 Msa0062190:intron 35.0%
TTCATAGAGCTTCTTGTAAG+AGG - chr1_2:21420203-21420222 None:intergenic 35.0%
TTAAACGAAGCAGAAAAAGC+CGG + chr1_2:21420250-21420269 Msa0062190:CDS 35.0%
! GGATTGGGAATTGATTCTTT+AGG - chr1_2:21420339-21420358 None:intergenic 35.0%
AATTCCCAATCCTCTTCAAA+TGG + chr1_2:21420347-21420366 Msa0062190:CDS 35.0%
CTAACCATTTGAAGAGGATT+GGG - chr1_2:21420354-21420373 None:intergenic 35.0%
TCAATATGCAAAAGCAAGAG+AGG + chr1_2:21420528-21420547 Msa0062190:CDS 35.0%
!!! GCGGCTTTTGAGATAAAAAA+GGG + chr1_2:21420574-21420593 Msa0062190:CDS 35.0%
GAGACTAAAAACGTTGCATT+TGG + chr1_2:21420847-21420866 Msa0062190:CDS 35.0%
AATTCAAACACTAGAAGCCT+TGG - chr1_2:21420899-21420918 None:intergenic 35.0%
!! TTTTGTTCTTCCTTTAGGAG+TGG + chr1_2:21420947-21420966 Msa0062190:three_prime_UTR 35.0%
CTACCACTAAAACAAATCCC+AGG + chr1_2:21418322-21418341 Msa0062190:CDS 40.0%
CTTGGGTTTGAGGAAATGAA+GGG - chr1_2:21418484-21418503 None:intergenic 40.0%
TCTTGGGTTTGAGGAAATGA+AGG - chr1_2:21418485-21418504 None:intergenic 40.0%
TGTCTAGGTAAGCACATACA+CGG - chr1_2:21418624-21418643 None:intergenic 40.0%
!! GATAAGTGCATGGTTTGGTT+CGG - chr1_2:21418650-21418669 None:intergenic 40.0%
CCTTTGATAAGTGCATGGTT+TGG - chr1_2:21418655-21418674 None:intergenic 40.0%
CCAAACCATGCACTTATCAA+AGG + chr1_2:21418652-21418671 Msa0062190:CDS 40.0%
!! AACCCTTCTGAAACTATCCT+TGG + chr1_2:21418859-21418878 Msa0062190:CDS 40.0%
CACCAAGGATAGTTTCAGAA+GGG - chr1_2:21418864-21418883 None:intergenic 40.0%
TCACCAAGGATAGTTTCAGA+AGG - chr1_2:21418865-21418884 None:intergenic 40.0%
! GAAACTATCCTTGGTGATCA+AGG + chr1_2:21418868-21418887 Msa0062190:CDS 40.0%
!!! TTTTAGGACCTTGATCACCA+AGG - chr1_2:21418879-21418898 None:intergenic 40.0%
CTTGTCAAACAAGCAGGAAA+GGG - chr1_2:21419000-21419019 None:intergenic 40.0%
CATACCACACCCTTAAACAT+AGG + chr1_2:21419028-21419047 Msa0062190:intron 40.0%
AGATCCTATGTTTAAGGGTG+TGG - chr1_2:21419035-21419054 None:intergenic 40.0%
TTGCTTAACATGTGCCCTAA+TGG + chr1_2:21419475-21419494 Msa0062190:intron 40.0%
TGCTTAACATGTGCCCTAAT+GGG + chr1_2:21419476-21419495 Msa0062190:intron 40.0%
! GGCTTCGCTTCTTTTTAAAC+CGG - chr1_2:21420272-21420291 None:intergenic 40.0%
GGTGAAAATGATATTGTGGC+AGG - chr1_2:21420293-21420312 None:intergenic 40.0%
CTGCGGTGAAAATGATATTG+TGG - chr1_2:21420297-21420316 None:intergenic 40.0%
! CACAATATCATTTTCACCGC+AGG + chr1_2:21420295-21420314 Msa0062190:CDS 40.0%
CCTAACCATTTGAAGAGGAT+TGG - chr1_2:21420355-21420374 None:intergenic 40.0%
CCAATCCTCTTCAAATGGTT+AGG + chr1_2:21420352-21420371 Msa0062190:CDS 40.0%
ACGAACCTAACCATTTGAAG+AGG - chr1_2:21420360-21420379 None:intergenic 40.0%
TTCAAATGGTTAGGTTCGTG+CGG + chr1_2:21420361-21420380 Msa0062190:CDS 40.0%
AGAGATACACAAAGAACTCG+CGG + chr1_2:21420387-21420406 Msa0062190:CDS 40.0%
AGAACCGTGGTAAAACAAGA+AGG + chr1_2:21420418-21420437 Msa0062190:CDS 40.0%
AATTGTGAAGAGTCATGACG+CGG + chr1_2:21420555-21420574 Msa0062190:CDS 40.0%
!!! CGCGGCTTTTGAGATAAAAA+AGG + chr1_2:21420573-21420592 Msa0062190:CDS 40.0%
TTTCGCCACAAAAGATCCTA+GGG + chr1_2:21420621-21420640 Msa0062190:CDS 40.0%
! GAAAACCCTAGGATCTTTTG+TGG - chr1_2:21420629-21420648 None:intergenic 40.0%
TTTGTGGCGAAAAGGTTTGT+TGG + chr1_2:21420664-21420683 Msa0062190:CDS 40.0%
! TTGTGGCGAAAAGGTTTGTT+GGG + chr1_2:21420665-21420684 Msa0062190:CDS 40.0%
TACCATTACTTCACTCACCA+AGG + chr1_2:21420879-21420898 Msa0062190:CDS 40.0%
TAGTGGTAGCTCTTTGTTGG+TGG - chr1_2:21418311-21418330 None:intergenic 45.0%
!!! CTGCCTGGGATTTGTTTTAG+TGG - chr1_2:21418328-21418347 None:intergenic 45.0%
AAACAAATCCCAGGCAGCTA+TGG + chr1_2:21418331-21418350 Msa0062190:CDS 45.0%
CAAAGATCGGTCCGATGAAA+GGG - chr1_2:21418360-21418379 None:intergenic 45.0%
TCAAAGATCGGTCCGATGAA+AGG - chr1_2:21418361-21418380 None:intergenic 45.0%
! TAGTCGTGTCGGTCAAAGAT+CGG - chr1_2:21418373-21418392 None:intergenic 45.0%
GGTTGTAGAAGTAGTCGTGT+CGG - chr1_2:21418384-21418403 None:intergenic 45.0%
CACGACTACTTCTACAACCA+AGG + chr1_2:21418385-21418404 Msa0062190:CDS 45.0%
TTTGAGGAAATGAAGGGACC+TGG - chr1_2:21418478-21418497 None:intergenic 45.0%
TGCTATGACTCTTGGGTTTG+AGG - chr1_2:21418494-21418513 None:intergenic 45.0%
TAAGAGGATCGGGAAAGATG+CGG - chr1_2:21418527-21418546 None:intergenic 45.0%
GAAAAACTCAACGTCCTCGA+CGG + chr1_2:21418562-21418581 Msa0062190:CDS 45.0%
ATGCCGTCGACAAAATTCAC+CGG + chr1_2:21418592-21418611 Msa0062190:CDS 45.0%
! GAGATTGAAGATGGGCTTTC+TGG + chr1_2:21418754-21418773 Msa0062190:CDS 45.0%
! GATGGGCTTTCTGGTAAAAG+TGG + chr1_2:21418763-21418782 Msa0062190:CDS 45.0%
CTTGCTCCACTTGCAACTTT+AGG + chr1_2:21418925-21418944 Msa0062190:CDS 45.0%
CCTTGTCAAACAAGCAGGAA+AGG - chr1_2:21419001-21419020 None:intergenic 45.0%
CCTTTCCTGCTTGTTTGACA+AGG + chr1_2:21418998-21419017 Msa0062190:CDS 45.0%
TCTCACCTTGTCAAACAAGC+AGG - chr1_2:21419006-21419025 None:intergenic 45.0%
! GTGCTAACTTGTGCCCATTA+GGG - chr1_2:21419492-21419511 None:intergenic 45.0%
ACCGTGGTAAAACAAGAAGG+TGG + chr1_2:21420421-21420440 Msa0062190:CDS 45.0%
!!! CCCACCTTCTTGTTTTACCA+CGG - chr1_2:21420425-21420444 None:intergenic 45.0%
CCGTGGTAAAACAAGAAGGT+GGG + chr1_2:21420422-21420441 Msa0062190:CDS 45.0%
CGTGGTAAAACAAGAAGGTG+GGG + chr1_2:21420423-21420442 Msa0062190:CDS 45.0%
TGGGGTAACAATTCAGTCGT+TGG + chr1_2:21420441-21420460 Msa0062190:CDS 45.0%
GCATATTGATAAGGCACAGC+AGG - chr1_2:21420517-21420536 None:intergenic 45.0%
! GATCTTTTGTGGCGAAAGGT+TGG - chr1_2:21420618-21420637 None:intergenic 45.0%
! CTAGGATCTTTTGTGGCGAA+AGG - chr1_2:21420622-21420641 None:intergenic 45.0%
CTTTCGCCACAAAAGATCCT+AGG + chr1_2:21420620-21420639 Msa0062190:CDS 45.0%
TCAGGATCATCGAAAACCCT+AGG - chr1_2:21420640-21420659 None:intergenic 45.0%
! TAGGGTTTTCGATGATCCTG+AGG + chr1_2:21420639-21420658 Msa0062190:CDS 45.0%
! CGATGATCCTGAGGTTTTTG+TGG + chr1_2:21420648-21420667 Msa0062190:CDS 45.0%
! CTTTTCGCCACAAAAACCTC+AGG - chr1_2:21420658-21420677 None:intergenic 45.0%
! CTGAGGTTTTTGTGGCGAAA+AGG + chr1_2:21420656-21420675 Msa0062190:CDS 45.0%
!! TGTGGCGAAAAGGTTTGTTG+GGG + chr1_2:21420666-21420685 Msa0062190:CDS 45.0%
AGAAACTGAAGAGCCTTCAG+CGG + chr1_2:21420732-21420751 Msa0062190:CDS 45.0%
CATTGCTTATTCTCCGCTGA+AGG - chr1_2:21420748-21420767 None:intergenic 45.0%
CGGAGAATAAGCAATGTCCT+GGG + chr1_2:21420752-21420771 Msa0062190:CDS 45.0%
AGCACAACAAGATTCTTCCC+AGG - chr1_2:21420772-21420791 None:intergenic 45.0%
AGCCTTGGTGAGTGAAGTAA+TGG - chr1_2:21420884-21420903 None:intergenic 45.0%
GCACAACATTCCACTCCTAA+AGG - chr1_2:21420960-21420979 None:intergenic 45.0%
AGCTATGGCCTCCCTTTCAT+CGG + chr1_2:21418346-21418365 Msa0062190:CDS 50.0%
TTCAGAACCAACATGCCTCC+AGG + chr1_2:21418457-21418476 Msa0062190:CDS 50.0%
! CCACCGGTGAATTTTGTCGA+CGG - chr1_2:21418598-21418617 None:intergenic 50.0%
AGCACATACACGGTAACCAC+CGG - chr1_2:21418614-21418633 None:intergenic 50.0%
!! GGTTTGGTTCGGTTGTGTCT+AGG - chr1_2:21418639-21418658 None:intergenic 50.0%
GGAGGTCCTAAAGTTGCAAG+TGG - chr1_2:21418934-21418953 None:intergenic 50.0%
! CGTGCTAACTTGTGCCCATT+AGG - chr1_2:21419493-21419512 None:intergenic 50.0%
GAGCTTCTTGTAAGAGGACC+TGG - chr1_2:21420197-21420216 None:intergenic 50.0%
!! GCGAAAAGGTTTGTTGGGGA+AGG + chr1_2:21420670-21420689 Msa0062190:CDS 50.0%
GCGGAGAATAAGCAATGTCC+TGG + chr1_2:21420751-21420770 Msa0062190:CDS 50.0%
AGATCGGTCCGATGAAAGGG+AGG - chr1_2:21418357-21418376 None:intergenic 55.0%
GAGGAAATGAAGGGACCTGG+AGG - chr1_2:21418475-21418494 None:intergenic 55.0%
CCGTCGACAAAATTCACCGG+TGG + chr1_2:21418595-21418614 Msa0062190:CDS 55.0%
ACCGCAGGCTTCAACGCATA+CGG + chr1_2:21420310-21420329 Msa0062190:CDS 55.0%
ACCGTATGCGTTGAAGCCTG+CGG - chr1_2:21420314-21420333 None:intergenic 55.0%
AAGGGAGGCCATAGCTGCCT+GGG - chr1_2:21418342-21418361 None:intergenic 60.0%
AAAGGGAGGCCATAGCTGCC+TGG - chr1_2:21418343-21418362 None:intergenic 60.0%
! GAAGGGACCTGGAGGCATGT+TGG - chr1_2:21418467-21418486 None:intergenic 60.0%
! ACGGCATGTAAGTGCCGTCG+AGG - chr1_2:21418579-21418598 None:intergenic 60.0%
GCAGGCTTCAACGCATACGG+TGG + chr1_2:21420313-21420332 Msa0062190:CDS 60.0%
CGCGGACGAGATAAGAACCG+TGG + chr1_2:21420405-21420424 Msa0062190:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 21418226 21421077 21418226 ID=Msa0062190;Name=Msa0062190
chr1_2 mRNA 21418226 21421077 21418226 ID=Msa0062190-mRNA-1;Parent=Msa0062190;Name=Msa0062190-mRNA-1;_AED=0.01;_eAED=0.01;_QI=54|1|1|1|1|1|2|162|485
chr1_2 exon 21418226 21419019 21418226 ID=Msa0062190-mRNA-1:exon:7949;Parent=Msa0062190-mRNA-1
chr1_2 exon 21420198 21421077 21420198 ID=Msa0062190-mRNA-1:exon:7950;Parent=Msa0062190-mRNA-1
chr1_2 five_prime_UTR 21418226 21418279 21418226 ID=Msa0062190-mRNA-1:five_prime_utr;Parent=Msa0062190-mRNA-1
chr1_2 CDS 21418280 21419019 21418280 ID=Msa0062190-mRNA-1:cds;Parent=Msa0062190-mRNA-1
chr1_2 CDS 21420198 21420915 21420198 ID=Msa0062190-mRNA-1:cds;Parent=Msa0062190-mRNA-1
chr1_2 three_prime_UTR 21420916 21421077 21420916 ID=Msa0062190-mRNA-1:three_prime_utr;Parent=Msa0062190-mRNA-1
Gene Sequence

>Msa0062190

ATGGCATCTTCAAAACAAGAACAATCTTCCACCAACAAAGAGCTACCACTAAAACAAATCCCAGGCAGCTATGGCCTCCCTTTCATCGGACCGATCTTTGACCGACACGACTACTTCTACAACCAAGGAAGAGACAAATTCTTCTCAACAAGAATCCAAAAATACAATTCAACAATCTTCAGAACCAACATGCCTCCAGGTCCCTTCATTTCCTCAAACCCAAGAGTCATAGCACTTTTAGACGCCGCATCTTTCCCGATCCTCTTAGACAACAAAAAAGTCGAAAAACTCAACGTCCTCGACGGCACTTACATGCCGTCGACAAAATTCACCGGTGGTTACCGTGTATGTGCTTACCTAGACACAACCGAACCAAACCATGCACTTATCAAAGGTTTCTATCTTAATACTCTTTTATTAAGAAAAGACTCTTTTATCCCTCTCTTTAAGACTATTCTTTCTGATGGTTTTAATGAGATTGAAGATGGGCTTTCTGGTAAAAGTGGTAAAGCTGATTTTAACTCTATTATGAGTGTGGCTTCGTTTAACTTCATGTTTAAGCTTTTTTGTGATAATAAGAACCCTTCTGAAACTATCCTTGGTGATCAAGGTCCTAAAATGTTTGATACTTGGTTACTCTTTCAACTTGCTCCACTTGCAACTTTAGGACCTCCTAAGATTTTCAATTATCTTGAAGATATTTTGCTACGTACGGTGCCCTTTCCTGCTTGTTTGACAAGGTCCTCTTACAAGAAGCTCTATGAAGCATTTTCTACTTCAGCTACAACAATTTTAAACGAAGCAGAAAAAGCCGGTTTAAAAAGAAGCGAAGCCTGCCACAATATCATTTTCACCGCAGGCTTCAACGCATACGGTGGCCTAAAGAATCAATTCCCAATCCTCTTCAAATGGTTAGGTTCGTGCGGCGAAGAGATACACAAAGAACTCGCGGACGAGATAAGAACCGTGGTAAAACAAGAAGGTGGGGTAACAATTCAGTCGTTGGAAAAAATGCCGTTAGTTAAATCAGTTGTCTATGAAGCGATGCGAATTGAACCTGCTGTGCCTTATCAATATGCAAAAGCAAGAGAGGATTTAATTGTGAAGAGTCATGACGCGGCTTTTGAGATAAAAAAGGGTGAAATGATATTTGGATACCAACCTTTCGCCACAAAAGATCCTAGGGTTTTCGATGATCCTGAGGTTTTTGTGGCGAAAAGGTTTGTTGGGGAAGGTGCGAAGTTGTTGAAGTATGTTTTGTGGTCTAATGGGAAAGAAACTGAAGAGCCTTCAGCGGAGAATAAGCAATGTCCTGGGAAGAATCTTGTTGTGCTTTTGTGTAGATTGTTATTGGTGGAGTTTTTCTTGCGTTATGATACTTTTGAGATTGAGACTAAAAACGTTGCATTTGGTGCTTCTGTTACCATTACTTCACTCACCAAGGCTTCTAGTGTTTGA

Protein sequence

>Msa0062190

MASSKQEQSSTNKELPLKQIPGSYGLPFIGPIFDRHDYFYNQGRDKFFSTRIQKYNSTIFRTNMPPGPFISSNPRVIALLDAASFPILLDNKKVEKLNVLDGTYMPSTKFTGGYRVCAYLDTTEPNHALIKGFYLNTLLLRKDSFIPLFKTILSDGFNEIEDGLSGKSGKADFNSIMSVASFNFMFKLFCDNKNPSETILGDQGPKMFDTWLLFQLAPLATLGPPKIFNYLEDILLRTVPFPACLTRSSYKKLYEAFSTSATTILNEAEKAGLKRSEACHNIIFTAGFNAYGGLKNQFPILFKWLGSCGEEIHKELADEIRTVVKQEGGVTIQSLEKMPLVKSVVYEAMRIEPAVPYQYAKAREDLIVKSHDAAFEIKKGEMIFGYQPFATKDPRVFDDPEVFVAKRFVGEGAKLLKYVLWSNGKETEEPSAENKQCPGKNLVVLLCRLLLVEFFLRYDTFEIETKNVAFGASVTITSLTKASSV*