Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1093340 | KEH22094.1 | 96.259 | 401 | 14 | 1 | 1 | 401 | 1 | 400 | 0.0 | 773 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1093340 | sp|Q9SS90|RGLG1_ARATH | 75.000 | 308 | 74 | 2 | 73 | 378 | 122 | 428 | 1.49e-166 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1093340 | G7L6A8 | 96.259 | 401 | 14 | 1 | 1 | 401 | 1 | 400 | 0.0 | 773 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0619710 | Msa1093340 | 0.805716 | 1.167086e-49 | -8.615850e-47 |
| Msa0660090 | Msa1093340 | 0.802187 | 6.318941e-49 | -8.615850e-47 |
| Msa0706150 | Msa1093340 | 0.811549 | 6.621281e-51 | -8.615850e-47 |
| Msa0132700 | Msa1093340 | 0.830628 | 2.639309e-55 | -8.615850e-47 |
| Msa0181880 | Msa1093340 | 0.824475 | 7.911678e-54 | -8.615850e-47 |
| Msa0221180 | Msa1093340 | 0.820442 | 6.844226e-53 | -8.615850e-47 |
| Msa0384870 | Msa1093340 | 0.849413 | 3.285985e-60 | -8.615850e-47 |
| Msa0394500 | Msa1093340 | 0.801619 | 8.265879e-49 | -8.615850e-47 |
| Msa0420680 | Msa1093340 | 0.825345 | 4.931376e-54 | -8.615850e-47 |
| Msa0479320 | Msa1093340 | 0.832867 | 7.398104e-56 | -8.615850e-47 |
| Msa1014410 | Msa1093340 | 0.858642 | 7.161186e-63 | -8.615850e-47 |
| Msa1093340 | Msa1356220 | 0.827864 | 1.236412e-54 | -8.615850e-47 |
| Msa0262750 | Msa1093340 | 0.834882 | 2.317569e-56 | -8.615850e-47 |
| Msa0300470 | Msa1093340 | 0.807110 | 5.932480e-50 | -8.615850e-47 |
| Msa0347780 | Msa1093340 | 0.800828 | 1.200076e-48 | -8.615850e-47 |
| Msa0512520 | Msa1093340 | 0.820564 | 6.417083e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1093340 | MtrunA17_Chr7g0226791 | 96.259 | 401 | 14 | 1 | 1 | 401 | 1 | 400 | 0.0 | 773 |
| Msa1093340 | MtrunA17_Chr6g0458051 | 69.231 | 442 | 94 | 10 | 1 | 401 | 1 | 441 | 0.0 | 563 |
| Msa1093340 | MtrunA17_Chr3g0123481 | 62.592 | 409 | 135 | 7 | 1 | 401 | 27 | 425 | 2.64e-168 | 480 |
| Msa1093340 | MtrunA17_Chr8g0381321 | 63.542 | 384 | 115 | 5 | 24 | 401 | 66 | 430 | 3.64e-165 | 473 |
| Msa1093340 | MtrunA17_Chr3g0116661 | 64.624 | 359 | 109 | 5 | 50 | 401 | 43 | 390 | 2.18e-160 | 459 |
| Msa1093340 | MtrunA17_Chr3g0130411 | 62.145 | 317 | 102 | 2 | 84 | 383 | 85 | 400 | 6.36e-141 | 409 |
| Msa1093340 | MtrunA17_Chr2g0309791 | 64.539 | 282 | 99 | 1 | 79 | 360 | 67 | 347 | 5.16e-132 | 386 |
| Msa1093340 | MtrunA17_Chr2g0309821 | 62.671 | 292 | 107 | 2 | 79 | 370 | 53 | 342 | 2.01e-129 | 378 |
| Msa1093340 | MtrunA17_Chr2g0309781 | 62.671 | 292 | 104 | 3 | 79 | 370 | 59 | 345 | 3.11e-129 | 378 |
| Msa1093340 | MtrunA17_Chr8g0356381 | 66.549 | 284 | 94 | 1 | 78 | 361 | 51 | 333 | 4.86e-129 | 378 |
| Msa1093340 | MtrunA17_Chr6g0488261 | 64.057 | 281 | 98 | 2 | 80 | 360 | 2 | 279 | 8.67e-129 | 374 |
| Msa1093340 | MtrunA17_Chr6g0488251 | 63.008 | 246 | 86 | 3 | 125 | 370 | 9 | 249 | 1.76e-106 | 317 |
| Msa1093340 | MtrunA17_Chr7g0250181 | 67.614 | 176 | 41 | 2 | 138 | 297 | 10 | 185 | 2.16e-78 | 241 |
| Msa1093340 | MtrunA17_Chr7g0250151 | 64.463 | 121 | 43 | 0 | 121 | 241 | 4 | 124 | 1.32e-47 | 159 |
| Msa1093340 | MtrunA17_Chr8g0385701 | 33.223 | 301 | 151 | 12 | 59 | 336 | 295 | 568 | 3.06e-24 | 105 |
| Msa1093340 | MtrunA17_Chr1g0170101 | 32.000 | 250 | 127 | 7 | 107 | 336 | 298 | 524 | 3.41e-23 | 102 |
| Msa1093340 | MtrunA17_Chr7g0273481 | 31.855 | 248 | 126 | 7 | 107 | 334 | 338 | 562 | 9.60e-23 | 100 |
| Msa1093340 | MtrunA17_Chr7g0250161 | 61.765 | 68 | 24 | 1 | 239 | 304 | 17 | 84 | 3.27e-20 | 86.7 |
| Msa1093340 | MtrunA17_Chr7g0273401 | 32.620 | 187 | 94 | 6 | 109 | 281 | 1 | 169 | 4.97e-20 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1093340 | AT3G01650.2 | 75.000 | 308 | 74 | 2 | 73 | 378 | 122 | 428 | 1.51e-167 | 479 |
| Msa1093340 | AT3G01650.1 | 75.000 | 308 | 74 | 2 | 73 | 378 | 122 | 428 | 1.51e-167 | 479 |
| Msa1093340 | AT5G14420.3 | 72.843 | 313 | 78 | 2 | 72 | 378 | 87 | 398 | 4.92e-165 | 472 |
| Msa1093340 | AT5G14420.2 | 72.843 | 313 | 78 | 2 | 72 | 378 | 87 | 398 | 4.92e-165 | 472 |
| Msa1093340 | AT5G14420.4 | 72.843 | 313 | 78 | 2 | 72 | 378 | 87 | 398 | 4.92e-165 | 472 |
| Msa1093340 | AT5G14420.1 | 72.843 | 313 | 78 | 2 | 72 | 378 | 87 | 398 | 4.92e-165 | 472 |
| Msa1093340 | AT1G67800.4 | 60.584 | 411 | 125 | 8 | 1 | 401 | 1 | 384 | 4.46e-162 | 463 |
| Msa1093340 | AT1G67800.1 | 60.584 | 411 | 125 | 8 | 1 | 401 | 1 | 384 | 4.46e-162 | 463 |
| Msa1093340 | AT1G67800.3 | 60.584 | 411 | 125 | 8 | 1 | 401 | 1 | 384 | 4.46e-162 | 463 |
| Msa1093340 | AT1G67800.6 | 60.584 | 411 | 125 | 8 | 1 | 401 | 1 | 384 | 4.46e-162 | 463 |
| Msa1093340 | AT1G67800.5 | 60.584 | 411 | 125 | 8 | 1 | 401 | 21 | 404 | 7.74e-162 | 462 |
| Msa1093340 | AT1G67800.2 | 60.584 | 411 | 125 | 8 | 1 | 401 | 21 | 404 | 1.49e-161 | 463 |
| Msa1093340 | AT5G63970.2 | 61.986 | 292 | 105 | 2 | 71 | 360 | 1 | 288 | 2.06e-130 | 380 |
| Msa1093340 | AT5G63970.1 | 61.986 | 292 | 105 | 2 | 71 | 360 | 1 | 288 | 2.06e-130 | 380 |
| Msa1093340 | AT1G79380.1 | 63.636 | 275 | 100 | 0 | 72 | 346 | 44 | 318 | 2.80e-129 | 379 |
| Msa1093340 | AT1G24545.1 | 46.789 | 109 | 20 | 1 | 122 | 230 | 46 | 116 | 6.06e-24 | 98.6 |
| Msa1093340 | AT5G61910.4 | 31.365 | 271 | 134 | 9 | 91 | 334 | 1087 | 1332 | 1.71e-23 | 103 |
| Msa1093340 | AT5G07300.1 | 31.985 | 272 | 131 | 11 | 91 | 334 | 322 | 567 | 1.91e-23 | 103 |
| Msa1093340 | AT5G61900.3 | 31.365 | 271 | 134 | 9 | 91 | 334 | 319 | 564 | 1.67e-22 | 100 |
| Msa1093340 | AT5G61900.1 | 31.365 | 271 | 134 | 9 | 91 | 334 | 319 | 564 | 1.67e-22 | 100 |
| Msa1093340 | AT1G08860.1 | 32.669 | 251 | 119 | 10 | 107 | 334 | 344 | 567 | 1.85e-19 | 91.3 |
Find 133 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATAGAGCTTAGTCTATT+AGG | 0.168682 | 7_3:+13129327 | Msa1093340:CDS |
| GAACAAGCAATATCAATTAT+TGG | 0.232968 | 7_3:+13127878 | Msa1093340:CDS |
| AATTGATATTGCTTGTTCAT+AGG | 0.259612 | 7_3:-13127873 | None:intergenic |
| TAAGAAAGAGTGAGTTGATA+TGG | 0.266850 | 7_3:+13126950 | Msa1093340:exon |
| GGCTTTGAAGTTCCCATAGA+TGG | 0.266984 | 7_3:-13129504 | None:intergenic |
| GTTCCTCATCTTCGACTTGC+AGG | 0.289558 | 7_3:+13128148 | Msa1093340:CDS |
| CCTCGTCCTCCAAGTTATTA+TGG | 0.307319 | 7_3:+13127122 | Msa1093340:CDS |
| CCATACTGGAGAGGGATAAT+TGG | 0.308526 | 7_3:-13129549 | None:intergenic |
| GGAGGCAGGGTTCAAATTCT+TGG | 0.314739 | 7_3:+13127000 | Msa1093340:CDS |
| GTCATGGCCATTTCAACTAT+TGG | 0.322534 | 7_3:-13128277 | None:intergenic |
| GATAACTTGATACCTTGTTT+TGG | 0.327552 | 7_3:+13127926 | Msa1093340:CDS |
| AGAAGTGTTGACACTGAATA+TGG | 0.329020 | 7_3:+13128879 | Msa1093340:CDS |
| CAGCTGTGAAGAAGAATAAC+TGG | 0.330258 | 7_3:-13127090 | None:intergenic |
| GCTTCCTCTTTCAATCATAT+TGG | 0.334145 | 7_3:+13129034 | Msa1093340:CDS |
| GAATCTTCCAATCTTATTGT+TGG | 0.337175 | 7_3:+13127674 | Msa1093340:CDS |
| ATTTGCACTTGCAGCATTGA+TGG | 0.339896 | 7_3:+13129281 | Msa1093340:CDS |
| GGAAATTCCTTCTCAGTATA+AGG | 0.341458 | 7_3:+13129302 | Msa1093340:CDS |
| AACGAAAAGGACTTGCGTTT+TGG | 0.346860 | 7_3:-13126296 | None:intergenic |
| AACAAGCAATATCAATTATT+GGG | 0.353001 | 7_3:+13127879 | Msa1093340:CDS |
| AGAATATCTTACCTCATCTA+TGG | 0.354073 | 7_3:-13127237 | None:intergenic |
| AAGACGTGCTGAGTCGGTAT+AGG | 0.359620 | 7_3:+13128119 | Msa1093340:CDS |
| TTGCTGACGCTTCATATTGA+AGG | 0.377224 | 7_3:+13126504 | Msa1093340:five_prime_UTR |
| TTGGGAGGCCATTGCCATAC+TGG | 0.377545 | 7_3:-13129563 | None:intergenic |
| TTCGTGTAACGCACGAGATT+CGG | 0.380153 | 7_3:-13126333 | None:intergenic |
| GACTATGGATGCCATTGTTC+GGG | 0.387421 | 7_3:+13128926 | Msa1093340:CDS |
| CCAATTATCCCTCTCCAGTA+TGG | 0.391968 | 7_3:+13129549 | Msa1093340:CDS |
| ATTGATATTGCTTGTTCATA+GGG | 0.403096 | 7_3:-13127872 | None:intergenic |
| CAATAGAGCTTAGTCTATTA+GGG | 0.403194 | 7_3:+13129328 | Msa1093340:CDS |
| TTTCAGGTCCTACCTCATTC+GGG | 0.408317 | 7_3:+13128254 | Msa1093340:intron |
| AAGAAAGAGTGAGTTGATAT+GGG | 0.412753 | 7_3:+13126951 | Msa1093340:exon |
| TGTCAAGTTATAGTTACTAA+TGG | 0.416670 | 7_3:-13126666 | None:intergenic |
| ATCAACACCAACAATAAGAT+TGG | 0.423416 | 7_3:-13127681 | None:intergenic |
| TGTTGTGTTACTTAAATTCG+TGG | 0.431175 | 7_3:+13126690 | Msa1093340:five_prime_UTR |
| TCTGCTTTCGTATCAATGAT+TGG | 0.440418 | 7_3:+13126419 | Msa1093340:five_prime_UTR |
| ATTCGGGCCAATAGTTGAAA+TGG | 0.440563 | 7_3:+13128270 | Msa1093340:CDS |
| TTGGTGAAGAAAAGGGAAAA+AGG | 0.442531 | 7_3:-13126277 | None:intergenic |
| CGTCTATTTAAATAATGTCT+TGG | 0.444092 | 7_3:+13126587 | Msa1093340:five_prime_UTR |
| AGACTATGGATGCCATTGTT+CGG | 0.444158 | 7_3:+13128925 | Msa1093340:CDS |
| AGACGTGCTGAGTCGGTATA+GGG | 0.444978 | 7_3:+13128120 | Msa1093340:CDS |
| TTGATAAGTTGTTTGGAAAG+TGG | 0.446852 | 7_3:+13126780 | Msa1093340:five_prime_UTR |
| CCTCTTTCAATCATATTGGT+TGG | 0.448169 | 7_3:+13129038 | Msa1093340:CDS |
| TTGCAGGTTACTGAGGCTCT+TGG | 0.458184 | 7_3:+13127638 | Msa1093340:intron |
| TCCACAGGAACAGAAGACTA+TGG | 0.462137 | 7_3:+13128911 | Msa1093340:CDS |
| TCTTTAGTTTGTGAATTTCA+CGG | 0.467646 | 7_3:+13129215 | Msa1093340:intron |
| GCAGAAGGAGCTGTTCCCAT+TGG | 0.468726 | 7_3:-13129582 | None:intergenic |
| CGCAGAGTGGCCCTTGATGA+TGG | 0.468959 | 7_3:+13127167 | Msa1093340:CDS |
| AAACAAAGCTTGCATCATAC+CGG | 0.472746 | 7_3:+13127836 | Msa1093340:CDS |
| CAAAGAATATCCCTCCTTCA+CGG | 0.476058 | 7_3:+13129247 | Msa1093340:CDS |
| TAAGGAGGAAAGTTGGAGGC+AGG | 0.478569 | 7_3:+13126986 | Msa1093340:CDS |
| ATCGATCCACAATCAAGTTA+TGG | 0.482825 | 7_3:+13127032 | Msa1093340:CDS |
| TCAATCATATTGGTTGGTGT+TGG | 0.483083 | 7_3:+13129044 | Msa1093340:CDS |
| GCTTCATATTGAAGGTTTGT+TGG | 0.486563 | 7_3:+13126512 | Msa1093340:five_prime_UTR |
| GCTTTGAAGTTCCCATAGAT+GGG | 0.490968 | 7_3:-13129503 | None:intergenic |
| GTAACTTTGTACCATCATCA+AGG | 0.492362 | 7_3:-13127178 | None:intergenic |
| CAGAAGGAGCTGTTCCCATT+GGG | 0.497328 | 7_3:-13129581 | None:intergenic |
| CCTCCAAGTTATTATGGTGC+TGG | 0.504001 | 7_3:+13127128 | Msa1093340:CDS |
| CAATAAGATTGGAAGATTCA+AGG | 0.504012 | 7_3:-13127670 | None:intergenic |
| TGATTGTCATAAGTCGAACT+TGG | 0.504105 | 7_3:-13129606 | None:intergenic |
| CCAACCAATATGATTGAAAG+AGG | 0.504429 | 7_3:-13129038 | None:intergenic |
| GGTGATAATAGCAGATGGCC+AGG | 0.505092 | 7_3:+13128336 | Msa1093340:CDS |
| AAATGTTTCATGCAACGAAA+AGG | 0.505723 | 7_3:-13126309 | None:intergenic |
| GAAGTGATAGCTGAAATAAA+TGG | 0.509303 | 7_3:-13126250 | None:intergenic |
| GTTGTTTGGAAAGTGGAAGC+TGG | 0.510836 | 7_3:+13126787 | Msa1093340:five_prime_UTR |
| TATGGCAATGGCCTCCCAAT+GGG | 0.512132 | 7_3:+13129567 | Msa1093340:CDS |
| CCATAATAACTTGGAGGACG+AGG | 0.513459 | 7_3:-13127122 | None:intergenic |
| TGACGATTGTCGAGCAGAGT+GGG | 0.514910 | 7_3:+13128296 | Msa1093340:CDS |
| CAAAGCCTTCTCATGCAGCT+AGG | 0.517403 | 7_3:+13129520 | Msa1093340:CDS |
| TGGATGCCATTGTTCGGGCC+AGG | 0.520240 | 7_3:+13128931 | Msa1093340:CDS |
| GTATTCAGTTTCTATCCTGA+TGG | 0.521940 | 7_3:+13128076 | Msa1093340:CDS |
| TTCAACTATTGGCCCGAATG+AGG | 0.523064 | 7_3:-13128266 | None:intergenic |
| TCCATAGTCTTCTGTTCCTG+TGG | 0.523919 | 7_3:-13128912 | None:intergenic |
| AAATTATCGAATGCTCGAGC+TGG | 0.525959 | 7_3:-13129110 | None:intergenic |
| GTCAGTTTATGAGCAAGTAC+AGG | 0.530895 | 7_3:+13129962 | Msa1093340:CDS |
| GAAGTTCTAAGGAGGAAAGT+TGG | 0.531159 | 7_3:+13126979 | Msa1093340:CDS |
| ACTGAGGCTCTTGGACGTGC+AGG | 0.531943 | 7_3:+13127647 | Msa1093340:CDS |
| GAGTTAAGGTATCGTCTTCG+AGG | 0.534449 | 7_3:-13126812 | None:intergenic |
| CCTTGACCATAACTTGATTG+TGG | 0.535391 | 7_3:-13127038 | None:intergenic |
| TTGGTGTTGGAGATGGACCA+TGG | 0.536579 | 7_3:+13129057 | Msa1093340:CDS |
| ATATTGGTTGGTGTTGGAGA+TGG | 0.538323 | 7_3:+13129050 | Msa1093340:CDS |
| TCGCCAGCACCATAATAACT+TGG | 0.540596 | 7_3:-13127131 | None:intergenic |
| GCTGCTTCTTTCCGTGAAGG+AGG | 0.542867 | 7_3:-13129258 | None:intergenic |
| ACAAAGAGCAATGAGTGGAC+AGG | 0.544996 | 7_3:+13127707 | Msa1093340:CDS |
| TAACTTTGTACCATCATCAA+GGG | 0.565640 | 7_3:-13127177 | None:intergenic |
| AGAAAGAGTGAGTTGATATG+GGG | 0.565739 | 7_3:+13126952 | Msa1093340:exon |
| GACTATATTGCAGGTTACTG+AGG | 0.566680 | 7_3:+13127631 | Msa1093340:intron |
| GGCAGGGTTCAAATTCTTGG+AGG | 0.567718 | 7_3:+13127003 | Msa1093340:CDS |
| CACAATCAAGTTATGGTCAA+GGG | 0.572539 | 7_3:+13127039 | Msa1093340:CDS |
| CTGCTTCTTTCCGTGAAGGA+GGG | 0.573480 | 7_3:-13129257 | None:intergenic |
| AACAAAGCTTGCATCATACC+GGG | 0.573761 | 7_3:+13127837 | Msa1093340:CDS |
| GATTTGAAGACGTGCTGAGT+CGG | 0.574296 | 7_3:+13128113 | Msa1093340:CDS |
| AGTTTATGAGCAAGTACAGG+AGG | 0.574632 | 7_3:+13129965 | Msa1093340:CDS |
| ATCCCTCTCCAGTATGGCAA+TGG | 0.574897 | 7_3:+13129555 | Msa1093340:CDS |
| TAAGTCGAACTTGGAGCAGA+AGG | 0.576567 | 7_3:-13129597 | None:intergenic |
| GGCCATTGCCATACTGGAGA+GGG | 0.577261 | 7_3:-13129557 | None:intergenic |
| ATAGGGATTTAGATCAATCC+CGG | 0.578139 | 7_3:-13127855 | None:intergenic |
| ATCGTCGTCGAATTCTGCCA+TGG | 0.579550 | 7_3:-13127906 | None:intergenic |
| CCACAATCAAGTTATGGTCA+AGG | 0.581198 | 7_3:+13127038 | Msa1093340:CDS |
| ATTGCTGCCTTATACTGAGA+AGG | 0.583237 | 7_3:-13129309 | None:intergenic |
| AATTCTTTCATCATGTCCCA+TGG | 0.583981 | 7_3:-13129074 | None:intergenic |
| GAAGAAGAATAACTGGGATG+TGG | 0.588045 | 7_3:-13127083 | None:intergenic |
| GTATGGCAATGGCCTCCCAA+TGG | 0.588169 | 7_3:+13129566 | Msa1093340:CDS |
| AAGGAGGAAAGTTGGAGGCA+GGG | 0.588727 | 7_3:+13126987 | Msa1093340:CDS |
| CCAGCACCATAATAACTTGG+AGG | 0.593335 | 7_3:-13127128 | None:intergenic |
| ATATGGAAAGCTAAGTCCAC+AGG | 0.594317 | 7_3:+13128896 | Msa1093340:CDS |
| AATGCTGCTTCTTTCCGTGA+AGG | 0.594540 | 7_3:-13129261 | None:intergenic |
| GAAAGAGTGAGTTGATATGG+GGG | 0.594716 | 7_3:+13126953 | Msa1093340:exon |
| TCAAACCTAGCTGCATGAGA+AGG | 0.600922 | 7_3:-13129525 | None:intergenic |
| ATCAATTATTGGGAAAACCA+TGG | 0.603381 | 7_3:+13127889 | Msa1093340:CDS |
| GAGTCACCTGGCCCGAACAA+TGG | 0.606778 | 7_3:-13128937 | None:intergenic |
| TGGTGTTGGAGATGGACCAT+GGG | 0.610398 | 7_3:+13129058 | Msa1093340:CDS |
| CTTTGAAGTTCCCATAGATG+GGG | 0.611840 | 7_3:-13129502 | None:intergenic |
| GACGATTGTCGAGCAGAGTG+GGG | 0.612345 | 7_3:+13128297 | Msa1093340:CDS |
| ACTATTGGCCCGAATGAGGT+AGG | 0.616508 | 7_3:-13128262 | None:intergenic |
| CCGTCTCCAAATCCAAAACA+AGG | 0.619603 | 7_3:-13127938 | None:intergenic |
| GCAGGGTTCAAATTCTTGGA+GGG | 0.620458 | 7_3:+13127004 | Msa1093340:CDS |
| ACTCTGCTCGACAATCGTCA+TGG | 0.622234 | 7_3:-13128293 | None:intergenic |
| GTTCTAAGGAGGAAAGTTGG+AGG | 0.623553 | 7_3:+13126982 | Msa1093340:CDS |
| ATGACGATTGTCGAGCAGAG+TGG | 0.624899 | 7_3:+13128295 | Msa1093340:CDS |
| ATGATGGTACAAAGTTACAA+AGG | 0.634152 | 7_3:+13127183 | Msa1093340:CDS |
| AAGGAGCTGTTCCCATTGGG+AGG | 0.639085 | 7_3:-13129578 | None:intergenic |
| ATTTCACAAAGAGCAATGAG+TGG | 0.643663 | 7_3:+13127702 | Msa1093340:CDS |
| TAATTACAATTCCATAGATG+AGG | 0.647233 | 7_3:+13127226 | Msa1093340:CDS |
| TAACCTGCAAGTCGAAGATG+AGG | 0.648022 | 7_3:-13128151 | None:intergenic |
| CATAATAACTTGGAGGACGA+GGG | 0.648309 | 7_3:-13127121 | None:intergenic |
| CTGCTATTATCACCAAAACA+TGG | 0.651474 | 7_3:-13128327 | None:intergenic |
| AGGCCATTGCCATACTGGAG+AGG | 0.651604 | 7_3:-13129558 | None:intergenic |
| AAAGAGTGAGTTGATATGGG+GGG | 0.657663 | 7_3:+13126954 | Msa1093340:exon |
| AGCTGTGAAGAAGAATAACT+GGG | 0.661649 | 7_3:-13127089 | None:intergenic |
| TTTGAAGTTCCCATAGATGG+GGG | 0.662914 | 7_3:-13129501 | None:intergenic |
| ACGATTGTCGAGCAGAGTGG+GGG | 0.664280 | 7_3:+13128298 | Msa1093340:CDS |
| AATATAACCACACTCGTCAG+TGG | 0.665820 | 7_3:-13126558 | None:intergenic |
| TTGTCTGCCACTGACGAGTG+TGG | 0.717034 | 7_3:+13126551 | Msa1093340:five_prime_UTR |
| ACTTTATGAGAGTCGCAGAG+TGG | 0.718269 | 7_3:+13127154 | Msa1093340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATAAATGTTGCAA+AGG | - | chr7_3:13128381-13128400 | None:intergenic | 15.0% |
| !! | AATATGAAGTAATTCAAATT+CGG | - | chr7_3:13128490-13128509 | None:intergenic | 15.0% |
| !!! | TAAACATATCTTTTGTTATT+CGG | + | chr7_3:13128757-13128776 | Msa1093340:intron | 15.0% |
| !! | TCAGATTATAATTTGATAAA+AGG | - | chr7_3:13129837-13129856 | None:intergenic | 15.0% |
| !! | AAAAAGATTGATAAGTTGTT+TGG | + | chr7_3:13126773-13126792 | Msa1093340:five_prime_UTR | 20.0% |
| !! | CTATAAATAAAAACGAGTTA+AGG | - | chr7_3:13126829-13126848 | None:intergenic | 20.0% |
| !!! | TCGTTTTTATTTATAGCTTT+TGG | + | chr7_3:13126833-13126852 | Msa1093340:five_prime_UTR | 20.0% |
| !!! | TTATTTATAGCTTTTGGAAT+TGG | + | chr7_3:13126839-13126858 | Msa1093340:five_prime_UTR | 20.0% |
| !! | TGAAAAGAAAGATAAATACT+CGG | + | chr7_3:13127394-13127413 | Msa1093340:intron | 20.0% |
| !!! | TATTTTTCATGTGATTATCA+GGG | + | chr7_3:13127486-13127505 | Msa1093340:intron | 20.0% |
| !!! | TTAAACTTGGTTTTGATTTT+AGG | + | chr7_3:13127797-13127816 | Msa1093340:intron | 20.0% |
| !!! | TAAACTTGGTTTTGATTTTA+GGG | + | chr7_3:13127798-13127817 | Msa1093340:intron | 20.0% |
| !! | AACAAGCAATATCAATTATT+GGG | + | chr7_3:13127879-13127898 | Msa1093340:CDS | 20.0% |
| !! | ACAAAAAAAAATTTCGTGAA+AGG | - | chr7_3:13128177-13128196 | None:intergenic | 20.0% |
| !! | TGAATAAATAGAATATACCT+AGG | - | chr7_3:13128201-13128220 | None:intergenic | 20.0% |
| !!! | GATTTTTACCATTTTAAAGT+AGG | + | chr7_3:13128414-13128433 | Msa1093340:intron | 20.0% |
| !!! | AACATTTTCCTACTTTAAAA+TGG | - | chr7_3:13128425-13128444 | None:intergenic | 20.0% |
| !! | TAATAACTACTGAGTAAAAA+TGG | - | chr7_3:13128737-13128756 | None:intergenic | 20.0% |
| !!! | TTTGTTTTCTTTGCTTTTGT+TGG | + | chr7_3:13126368-13126387 | Msa1093340:five_prime_UTR | 25.0% |
| ! | CGTCTATTTAAATAATGTCT+TGG | + | chr7_3:13126587-13126606 | Msa1093340:five_prime_UTR | 25.0% |
| ! | TGTCAAGTTATAGTTACTAA+TGG | - | chr7_3:13126669-13126688 | None:intergenic | 25.0% |
| ! | CACTTGAAAAAACATAAGAT+TGG | + | chr7_3:13126906-13126925 | Msa1093340:five_prime_UTR | 25.0% |
| ! | TAATTACAATTCCATAGATG+AGG | + | chr7_3:13127226-13127245 | Msa1093340:CDS | 25.0% |
| ! | TGAGGTAAGATATTCTAATT+TGG | + | chr7_3:13127244-13127263 | Msa1093340:intron | 25.0% |
| !! | GTATTTTTCATGTGATTATC+AGG | + | chr7_3:13127485-13127504 | Msa1093340:intron | 25.0% |
| !! | TATATCATTGACTATATTGC+AGG | + | chr7_3:13127622-13127641 | Msa1093340:intron | 25.0% |
| ! | ATAGTGAAACATGTTAAACT+TGG | + | chr7_3:13127784-13127803 | Msa1093340:intron | 25.0% |
| ! | ATTGATATTGCTTGTTCATA+GGG | - | chr7_3:13127875-13127894 | None:intergenic | 25.0% |
| ! | AATTGATATTGCTTGTTCAT+AGG | - | chr7_3:13127876-13127895 | None:intergenic | 25.0% |
| ! | GAACAAGCAATATCAATTAT+TGG | + | chr7_3:13127878-13127897 | Msa1093340:CDS | 25.0% |
| !!! | TTCTTTCCAAATTTTAGAGT+TGG | + | chr7_3:13128005-13128024 | Msa1093340:intron | 25.0% |
| !!! | TTACTACCAACTCTAAAATT+TGG | - | chr7_3:13128014-13128033 | None:intergenic | 25.0% |
| ! | GTAAGAATTATGTGATATTG+TGG | + | chr7_3:13128030-13128049 | Msa1093340:intron | 25.0% |
| !!! | CGAAATTTTTTTTTGTTCCT+AGG | + | chr7_3:13128181-13128200 | Msa1093340:intron | 25.0% |
| ! | TGTCATTGTTAAAAGAACAT+TGG | + | chr7_3:13128221-13128240 | Msa1093340:intron | 25.0% |
| ! | AATAGAGTTGAAAAAATACC+TGG | - | chr7_3:13128357-13128376 | None:intergenic | 25.0% |
| ! | GAATGCTCATTAAACTAAAA+AGG | + | chr7_3:13128524-13128543 | Msa1093340:intron | 25.0% |
| ! | CAATTTATTTGAGGGAAAAT+TGG | - | chr7_3:13128579-13128598 | None:intergenic | 25.0% |
| ! | TTTGCATATGTACTCTTTAA+TGG | + | chr7_3:13128619-13128638 | Msa1093340:intron | 25.0% |
| !! | ATTCTTTTTCCCATTATGTA+TGG | - | chr7_3:13128669-13128688 | None:intergenic | 25.0% |
| !! | TACATAATGGGAAAAAGAAT+TGG | + | chr7_3:13128669-13128688 | Msa1093340:intron | 25.0% |
| ! | AGAAACACATAATGATTCAA+TGG | - | chr7_3:13129198-13129217 | None:intergenic | 25.0% |
| !!! | TCTTTAGTTTGTGAATTTCA+CGG | + | chr7_3:13129215-13129234 | Msa1093340:intron | 25.0% |
| ! | ACAAATAAAATCAATGCGAT+TGG | - | chr7_3:13129373-13129392 | None:intergenic | 25.0% |
| !! | TTATCCTTTTAGTAGCAAAA+AGG | + | chr7_3:13129446-13129465 | Msa1093340:intron | 25.0% |
| ! | TATCTTCAAATGCTTTAGTA+CGG | + | chr7_3:13129774-13129793 | Msa1093340:intron | 25.0% |
| GAAGTGATAGCTGAAATAAA+TGG | - | chr7_3:13126253-13126272 | None:intergenic | 30.0% | |
| AAATGTTTCATGCAACGAAA+AGG | - | chr7_3:13126312-13126331 | None:intergenic | 30.0% | |
| !! | TGTTGTGTTACTTAAATTCG+TGG | + | chr7_3:13126690-13126709 | Msa1093340:five_prime_UTR | 30.0% |
| !!! | GGATTTTGTATTGACTATTG+AGG | + | chr7_3:13126711-13126730 | Msa1093340:five_prime_UTR | 30.0% |
| TTGATAAGTTGTTTGGAAAG+TGG | + | chr7_3:13126780-13126799 | Msa1093340:five_prime_UTR | 30.0% | |
| !! | TAAGAAAGAGTGAGTTGATA+TGG | + | chr7_3:13126950-13126969 | Msa1093340:exon | 30.0% |
| !! | AAGAAAGAGTGAGTTGATAT+GGG | + | chr7_3:13126951-13126970 | Msa1093340:exon | 30.0% |
| TAACTTTGTACCATCATCAA+GGG | - | chr7_3:13127180-13127199 | None:intergenic | 30.0% | |
| ATGATGGTACAAAGTTACAA+AGG | + | chr7_3:13127183-13127202 | Msa1093340:CDS | 30.0% | |
| AGAATATCTTACCTCATCTA+TGG | - | chr7_3:13127240-13127259 | None:intergenic | 30.0% | |
| TAATCCTTACGATAACTTTG+CGG | + | chr7_3:13127293-13127312 | Msa1093340:intron | 30.0% | |
| AACATGTGGTCATTTACATA+AGG | - | chr7_3:13127329-13127348 | None:intergenic | 30.0% | |
| CAATAAGATTGGAAGATTCA+AGG | - | chr7_3:13127673-13127692 | None:intergenic | 30.0% | |
| GAATCTTCCAATCTTATTGT+TGG | + | chr7_3:13127674-13127693 | Msa1093340:CDS | 30.0% | |
| ATCAACACCAACAATAAGAT+TGG | - | chr7_3:13127684-13127703 | None:intergenic | 30.0% | |
| ATCAATTATTGGGAAAACCA+TGG | + | chr7_3:13127889-13127908 | Msa1093340:CDS | 30.0% | |
| !! | GATAACTTGATACCTTGTTT+TGG | + | chr7_3:13127926-13127945 | Msa1093340:CDS | 30.0% |
| !!! | TTGATACCTTGTTTTGGATT+TGG | + | chr7_3:13127932-13127951 | Msa1093340:CDS | 30.0% |
| GAAAAACTGCAAAAGAGTAA+AGG | + | chr7_3:13128550-13128569 | Msa1093340:intron | 30.0% | |
| CACAGAGACAATTTATTTGA+GGG | - | chr7_3:13128587-13128606 | None:intergenic | 30.0% | |
| TCACAGAGACAATTTATTTG+AGG | - | chr7_3:13128588-13128607 | None:intergenic | 30.0% | |
| TTATGTATGGTTAAGCCTAT+CGG | - | chr7_3:13128656-13128675 | None:intergenic | 30.0% | |
| ATAGGCTTAACCATACATAA+TGG | + | chr7_3:13128656-13128675 | Msa1093340:intron | 30.0% | |
| TAGGCTTAACCATACATAAT+GGG | + | chr7_3:13128657-13128676 | Msa1093340:intron | 30.0% | |
| ! | TTACACTTCATGGTTTTTCA+AGG | - | chr7_3:13128815-13128834 | None:intergenic | 30.0% |
| AGTACAATGTTTACACTTCA+TGG | - | chr7_3:13128825-13128844 | None:intergenic | 30.0% | |
| CAATAGAGCTTAGTCTATTA+GGG | + | chr7_3:13129328-13129347 | Msa1093340:CDS | 30.0% | |
| GTCTATTAGGGTATGTATTT+CGG | + | chr7_3:13129340-13129359 | Msa1093340:intron | 30.0% | |
| TAAAATCAATGCGATTGGTA+AGG | - | chr7_3:13129368-13129387 | None:intergenic | 30.0% | |
| ! | ATCACTATCTTTGAAGAACT+TGG | + | chr7_3:13129686-13129705 | Msa1093340:intron | 30.0% |
| !!! | GCTCTCTTTTTTTATCATCT+CGG | - | chr7_3:13129877-13129896 | None:intergenic | 30.0% |
| TTGGTGAAGAAAAGGGAAAA+AGG | - | chr7_3:13126280-13126299 | None:intergenic | 35.0% | |
| !! | TTGCGTTTTGGTGAAGAAAA+GGG | - | chr7_3:13126287-13126306 | None:intergenic | 35.0% |
| TCTGCTTTCGTATCAATGAT+TGG | + | chr7_3:13126419-13126438 | Msa1093340:five_prime_UTR | 35.0% | |
| GCTTCATATTGAAGGTTTGT+TGG | + | chr7_3:13126512-13126531 | Msa1093340:five_prime_UTR | 35.0% | |
| !! | AGAAAGAGTGAGTTGATATG+GGG | + | chr7_3:13126952-13126971 | Msa1093340:exon | 35.0% |
| ATCGATCCACAATCAAGTTA+TGG | + | chr7_3:13127032-13127051 | Msa1093340:CDS | 35.0% | |
| CACAATCAAGTTATGGTCAA+GGG | + | chr7_3:13127039-13127058 | Msa1093340:CDS | 35.0% | |
| AGCTGTGAAGAAGAATAACT+GGG | - | chr7_3:13127092-13127111 | None:intergenic | 35.0% | |
| GTAACTTTGTACCATCATCA+AGG | - | chr7_3:13127181-13127200 | None:intergenic | 35.0% | |
| ATATCCGCAAAGTTATCGTA+AGG | - | chr7_3:13127300-13127319 | None:intergenic | 35.0% | |
| ! | ATTCCTTTCTCACCGTATTT+TGG | + | chr7_3:13127550-13127569 | Msa1093340:intron | 35.0% |
| ATTTCACAAAGAGCAATGAG+TGG | + | chr7_3:13127702-13127721 | Msa1093340:CDS | 35.0% | |
| AAACAAAGCTTGCATCATAC+CGG | + | chr7_3:13127836-13127855 | Msa1093340:CDS | 35.0% | |
| ATAGGGATTTAGATCAATCC+CGG | - | chr7_3:13127858-13127877 | None:intergenic | 35.0% | |
| GTATTCAGTTTCTATCCTGA+TGG | + | chr7_3:13128076-13128095 | Msa1093340:CDS | 35.0% | |
| !! | CATTGGTGCTTACTATTTTC+AGG | + | chr7_3:13128238-13128257 | Msa1093340:intron | 35.0% |
| CTGCTATTATCACCAAAACA+TGG | - | chr7_3:13128330-13128349 | None:intergenic | 35.0% | |
| !! | GTTTTGGTGATAATAGCAGA+TGG | + | chr7_3:13128331-13128350 | Msa1093340:CDS | 35.0% |
| ATGGTTAAACAGTTTCCGAT+AGG | + | chr7_3:13128638-13128657 | Msa1093340:intron | 35.0% | |
| !! | AGAAGTGTTGACACTGAATA+TGG | + | chr7_3:13128879-13128898 | Msa1093340:CDS | 35.0% |
| GCTTCCTCTTTCAATCATAT+TGG | + | chr7_3:13129034-13129053 | Msa1093340:CDS | 35.0% | |
| CCAACCAATATGATTGAAAG+AGG | - | chr7_3:13129041-13129060 | None:intergenic | 35.0% | |
| CCTCTTTCAATCATATTGGT+TGG | + | chr7_3:13129038-13129057 | Msa1093340:CDS | 35.0% | |
| ! | TCAATCATATTGGTTGGTGT+TGG | + | chr7_3:13129044-13129063 | Msa1093340:CDS | 35.0% |
| AATTCTTTCATCATGTCCCA+TGG | - | chr7_3:13129077-13129096 | None:intergenic | 35.0% | |
| ! | TCGAGCATTCGATAATTTTC+AGG | + | chr7_3:13129115-13129134 | Msa1093340:CDS | 35.0% |
| !!! | TTTTCAGGTCTGTAATGATG+CGG | + | chr7_3:13129130-13129149 | Msa1093340:intron | 35.0% |
| !! | TTTTGACTAGCAAGACTTGA+AGG | - | chr7_3:13129170-13129189 | None:intergenic | 35.0% |
| GGAAATTCCTTCTCAGTATA+AGG | + | chr7_3:13129302-13129321 | Msa1093340:CDS | 35.0% | |
| GCAATAGAGCTTAGTCTATT+AGG | + | chr7_3:13129327-13129346 | Msa1093340:CDS | 35.0% | |
| AGGATAACAACCAGCATAAA+TGG | - | chr7_3:13129433-13129452 | None:intergenic | 35.0% | |
| ! | TCCTTTTAGTAGCAAAAAGG+AGG | + | chr7_3:13129449-13129468 | Msa1093340:intron | 35.0% |
| ! | ACCTCCTTTTTGCTACTAAA+AGG | - | chr7_3:13129453-13129472 | None:intergenic | 35.0% |
| TGATTGTCATAAGTCGAACT+TGG | - | chr7_3:13129609-13129628 | None:intergenic | 35.0% | |
| TCAGAGTAAGTAATGTGGAT+AGG | - | chr7_3:13129810-13129829 | None:intergenic | 35.0% | |
| !! | CTTGCGTTTTGGTGAAGAAA+AGG | - | chr7_3:13126288-13126307 | None:intergenic | 40.0% |
| ! | AACGAAAAGGACTTGCGTTT+TGG | - | chr7_3:13126299-13126318 | None:intergenic | 40.0% |
| TTGCTGACGCTTCATATTGA+AGG | + | chr7_3:13126504-13126523 | Msa1093340:five_prime_UTR | 40.0% | |
| AATATAACCACACTCGTCAG+TGG | - | chr7_3:13126561-13126580 | None:intergenic | 40.0% | |
| !! | GAAAGAGTGAGTTGATATGG+GGG | + | chr7_3:13126953-13126972 | Msa1093340:exon | 40.0% |
| !! | AAAGAGTGAGTTGATATGGG+GGG | + | chr7_3:13126954-13126973 | Msa1093340:exon | 40.0% |
| !! | GAAGTTCTAAGGAGGAAAGT+TGG | + | chr7_3:13126979-13126998 | Msa1093340:CDS | 40.0% |
| CCTTGACCATAACTTGATTG+TGG | - | chr7_3:13127041-13127060 | None:intergenic | 40.0% | |
| CCACAATCAAGTTATGGTCA+AGG | + | chr7_3:13127038-13127057 | Msa1093340:CDS | 40.0% | |
| GAAGAAGAATAACTGGGATG+TGG | - | chr7_3:13127086-13127105 | None:intergenic | 40.0% | |
| CAGCTGTGAAGAAGAATAAC+TGG | - | chr7_3:13127093-13127112 | None:intergenic | 40.0% | |
| CATAATAACTTGGAGGACGA+GGG | - | chr7_3:13127124-13127143 | None:intergenic | 40.0% | |
| GTTGAAGCAAGATGAACATG+TGG | - | chr7_3:13127343-13127362 | None:intergenic | 40.0% | |
| TGAAGACGAGCACCAAAATA+CGG | - | chr7_3:13127565-13127584 | None:intergenic | 40.0% | |
| GACTATATTGCAGGTTACTG+AGG | + | chr7_3:13127631-13127650 | Msa1093340:intron | 40.0% | |
| AACAAAGCTTGCATCATACC+GGG | + | chr7_3:13127837-13127856 | Msa1093340:CDS | 40.0% | |
| !!! | CCTTGTTTTGGATTTGGAGA+CGG | + | chr7_3:13127938-13127957 | Msa1093340:CDS | 40.0% |
| ! | CCTGATGGAAGTTTTTGCAA+CGG | + | chr7_3:13128091-13128110 | Msa1093340:CDS | 40.0% |
| !!! | TTTTCAGGTCCTACCTCATT+CGG | + | chr7_3:13128253-13128272 | Msa1093340:intron | 40.0% |
| ATTCGGGCCAATAGTTGAAA+TGG | + | chr7_3:13128270-13128289 | Msa1093340:CDS | 40.0% | |
| GTCATGGCCATTTCAACTAT+TGG | - | chr7_3:13128280-13128299 | None:intergenic | 40.0% | |
| TATCGACCATTGTAGATGTC+GGG | - | chr7_3:13128850-13128869 | None:intergenic | 40.0% | |
| ! | GTATCGACCATTGTAGATGT+CGG | - | chr7_3:13128851-13128870 | None:intergenic | 40.0% |
| ACATCTACAATGGTCGATAC+AGG | + | chr7_3:13128851-13128870 | Msa1093340:intron | 40.0% | |
| ATATGGAAAGCTAAGTCCAC+AGG | + | chr7_3:13128896-13128915 | Msa1093340:CDS | 40.0% | |
| AGACTATGGATGCCATTGTT+CGG | + | chr7_3:13128925-13128944 | Msa1093340:CDS | 40.0% | |
| AAAACTACATCAGAGTCACC+TGG | - | chr7_3:13128952-13128971 | None:intergenic | 40.0% | |
| GAAGCTTACTGTGATAGAGA+AGG | - | chr7_3:13129019-13129038 | None:intergenic | 40.0% | |
| !! | ATATTGGTTGGTGTTGGAGA+TGG | + | chr7_3:13129050-13129069 | Msa1093340:CDS | 40.0% |
| AAATTATCGAATGCTCGAGC+TGG | - | chr7_3:13129113-13129132 | None:intergenic | 40.0% | |
| ! | TTTCAGGTCTGTAATGATGC+GGG | + | chr7_3:13129131-13129150 | Msa1093340:intron | 40.0% |
| CAAAGAATATCCCTCCTTCA+CGG | + | chr7_3:13129247-13129266 | Msa1093340:CDS | 40.0% | |
| ! | ATTTGCACTTGCAGCATTGA+TGG | + | chr7_3:13129281-13129300 | Msa1093340:CDS | 40.0% |
| ATTGCTGCCTTATACTGAGA+AGG | - | chr7_3:13129312-13129331 | None:intergenic | 40.0% | |
| ! | TCATCTCATGCCATTTATGC+TGG | + | chr7_3:13129420-13129439 | Msa1093340:intron | 40.0% |
| ! | TTTGAAGTTCCCATAGATGG+GGG | - | chr7_3:13129504-13129523 | None:intergenic | 40.0% |
| !! | CTTTGAAGTTCCCATAGATG+GGG | - | chr7_3:13129505-13129524 | None:intergenic | 40.0% |
| !! | GCTTTGAAGTTCCCATAGAT+GGG | - | chr7_3:13129506-13129525 | None:intergenic | 40.0% |
| GAGCTTCAGAGTAAGTAATG+TGG | - | chr7_3:13129815-13129834 | None:intergenic | 40.0% | |
| ! | TTGTGTGATGTTGTTTGCAG+AGG | + | chr7_3:13129908-13129927 | Msa1093340:intron | 40.0% |
| ! | TGTGTGATGTTGTTTGCAGA+GGG | + | chr7_3:13129909-13129928 | Msa1093340:intron | 40.0% |
| GTCAGTTTATGAGCAAGTAC+AGG | + | chr7_3:13129962-13129981 | Msa1093340:CDS | 40.0% | |
| AGTTTATGAGCAAGTACAGG+AGG | + | chr7_3:13129965-13129984 | Msa1093340:CDS | 40.0% | |
| TTCGTGTAACGCACGAGATT+CGG | - | chr7_3:13126336-13126355 | None:intergenic | 45.0% | |
| GTTGTTTGGAAAGTGGAAGC+TGG | + | chr7_3:13126787-13126806 | Msa1093340:five_prime_UTR | 45.0% | |
| !! | GAGTTAAGGTATCGTCTTCG+AGG | - | chr7_3:13126815-13126834 | None:intergenic | 45.0% |
| !! | GTTCTAAGGAGGAAAGTTGG+AGG | + | chr7_3:13126982-13127001 | Msa1093340:CDS | 45.0% |
| GCAGGGTTCAAATTCTTGGA+GGG | + | chr7_3:13127004-13127023 | Msa1093340:CDS | 45.0% | |
| CCATAATAACTTGGAGGACG+AGG | - | chr7_3:13127125-13127144 | None:intergenic | 45.0% | |
| CCTCGTCCTCCAAGTTATTA+TGG | + | chr7_3:13127122-13127141 | Msa1093340:CDS | 45.0% | |
| CCAGCACCATAATAACTTGG+AGG | - | chr7_3:13127131-13127150 | None:intergenic | 45.0% | |
| CCTCCAAGTTATTATGGTGC+TGG | + | chr7_3:13127128-13127147 | Msa1093340:CDS | 45.0% | |
| TCGCCAGCACCATAATAACT+TGG | - | chr7_3:13127134-13127153 | None:intergenic | 45.0% | |
| ACTTTATGAGAGTCGCAGAG+TGG | + | chr7_3:13127154-13127173 | Msa1093340:CDS | 45.0% | |
| GCACCAAAATACGGTGAGAA+AGG | - | chr7_3:13127556-13127575 | None:intergenic | 45.0% | |
| ACAAAGAGCAATGAGTGGAC+AGG | + | chr7_3:13127707-13127726 | Msa1093340:CDS | 45.0% | |
| CCGTCTCCAAATCCAAAACA+AGG | - | chr7_3:13127941-13127960 | None:intergenic | 45.0% | |
| !! | GTTTTGGATTTGGAGACGGT+AGG | + | chr7_3:13127942-13127961 | Msa1093340:intron | 45.0% |
| CCGTTGCAAAAACTTCCATC+AGG | - | chr7_3:13128094-13128113 | None:intergenic | 45.0% | |
| GATTTGAAGACGTGCTGAGT+CGG | + | chr7_3:13128113-13128132 | Msa1093340:CDS | 45.0% | |
| TAACCTGCAAGTCGAAGATG+AGG | - | chr7_3:13128154-13128173 | None:intergenic | 45.0% | |
| ! | TTTCAGGTCCTACCTCATTC+GGG | + | chr7_3:13128254-13128273 | Msa1093340:intron | 45.0% |
| TTCAACTATTGGCCCGAATG+AGG | - | chr7_3:13128269-13128288 | None:intergenic | 45.0% | |
| AAAATGTTAACGAGTGCCCC+CGG | + | chr7_3:13128437-13128456 | Msa1093340:intron | 45.0% | |
| TGACTTCTTAACCAATGCCC+CGG | - | chr7_3:13128459-13128478 | None:intergenic | 45.0% | |
| TACTCACCCGACATCTACAA+TGG | + | chr7_3:13128841-13128860 | Msa1093340:intron | 45.0% | |
| TCCACAGGAACAGAAGACTA+TGG | + | chr7_3:13128911-13128930 | Msa1093340:CDS | 45.0% | |
| TCCATAGTCTTCTGTTCCTG+TGG | - | chr7_3:13128915-13128934 | None:intergenic | 45.0% | |
| GACTATGGATGCCATTGTTC+GGG | + | chr7_3:13128926-13128945 | Msa1093340:CDS | 45.0% | |
| TTCAGGTCTGTAATGATGCG+GGG | + | chr7_3:13129132-13129151 | Msa1093340:intron | 45.0% | |
| ! | AATGCTGCTTCTTTCCGTGA+AGG | - | chr7_3:13129264-13129283 | None:intergenic | 45.0% |
| !! | GGCTTTGAAGTTCCCATAGA+TGG | - | chr7_3:13129507-13129526 | None:intergenic | 45.0% |
| TCAAACCTAGCTGCATGAGA+AGG | - | chr7_3:13129528-13129547 | None:intergenic | 45.0% | |
| CCATACTGGAGAGGGATAAT+TGG | - | chr7_3:13129552-13129571 | None:intergenic | 45.0% | |
| CCAATTATCCCTCTCCAGTA+TGG | + | chr7_3:13129549-13129568 | Msa1093340:CDS | 45.0% | |
| TAAGTCGAACTTGGAGCAGA+AGG | - | chr7_3:13129600-13129619 | None:intergenic | 45.0% | |
| ! | GTGTGATGTTGTTTGCAGAG+GGG | + | chr7_3:13129910-13129929 | Msa1093340:intron | 45.0% |
| ! | TGTGATGTTGTTTGCAGAGG+GGG | + | chr7_3:13129911-13129930 | Msa1093340:intron | 45.0% |
| !! | AGCGTCGAAACGCATTTTGT+AGG | - | chr7_3:13129939-13129958 | None:intergenic | 45.0% |
| TATGGGGGGACGAAGTTCTA+AGG | + | chr7_3:13126968-13126987 | Msa1093340:exon | 50.0% | |
| TAAGGAGGAAAGTTGGAGGC+AGG | + | chr7_3:13126986-13127005 | Msa1093340:CDS | 50.0% | |
| AAGGAGGAAAGTTGGAGGCA+GGG | + | chr7_3:13126987-13127006 | Msa1093340:CDS | 50.0% | |
| GGAGGCAGGGTTCAAATTCT+TGG | + | chr7_3:13127000-13127019 | Msa1093340:CDS | 50.0% | |
| GGCAGGGTTCAAATTCTTGG+AGG | + | chr7_3:13127003-13127022 | Msa1093340:CDS | 50.0% | |
| TTGCAGGTTACTGAGGCTCT+TGG | + | chr7_3:13127638-13127657 | Msa1093340:intron | 50.0% | |
| ATCGTCGTCGAATTCTGCCA+TGG | - | chr7_3:13127909-13127928 | None:intergenic | 50.0% | |
| AAGACGTGCTGAGTCGGTAT+AGG | + | chr7_3:13128119-13128138 | Msa1093340:CDS | 50.0% | |
| AGACGTGCTGAGTCGGTATA+GGG | + | chr7_3:13128120-13128139 | Msa1093340:CDS | 50.0% | |
| ! | GTTCCTCATCTTCGACTTGC+AGG | + | chr7_3:13128148-13128167 | Msa1093340:CDS | 50.0% |
| ACTATTGGCCCGAATGAGGT+AGG | - | chr7_3:13128265-13128284 | None:intergenic | 50.0% | |
| ACTCTGCTCGACAATCGTCA+TGG | - | chr7_3:13128296-13128315 | None:intergenic | 50.0% | |
| ATGACGATTGTCGAGCAGAG+TGG | + | chr7_3:13128295-13128314 | Msa1093340:CDS | 50.0% | |
| TGACGATTGTCGAGCAGAGT+GGG | + | chr7_3:13128296-13128315 | Msa1093340:CDS | 50.0% | |
| ! | TGGGGGTCAGTACCATGTTT+TGG | + | chr7_3:13128315-13128334 | Msa1093340:CDS | 50.0% |
| GGTGATAATAGCAGATGGCC+AGG | + | chr7_3:13128336-13128355 | Msa1093340:CDS | 50.0% | |
| AAATGTTAACGAGTGCCCCC+GGG | + | chr7_3:13128438-13128457 | Msa1093340:intron | 50.0% | |
| ACTTCTTAACCAATGCCCCG+GGG | - | chr7_3:13128457-13128476 | None:intergenic | 50.0% | |
| GACTTCTTAACCAATGCCCC+GGG | - | chr7_3:13128458-13128477 | None:intergenic | 50.0% | |
| !! | TTGGTGTTGGAGATGGACCA+TGG | + | chr7_3:13129057-13129076 | Msa1093340:CDS | 50.0% |
| ! | TGGTGTTGGAGATGGACCAT+GGG | + | chr7_3:13129058-13129077 | Msa1093340:CDS | 50.0% |
| CTGCTTCTTTCCGTGAAGGA+GGG | - | chr7_3:13129260-13129279 | None:intergenic | 50.0% | |
| CAAAGCCTTCTCATGCAGCT+AGG | + | chr7_3:13129520-13129539 | Msa1093340:CDS | 50.0% | |
| ATCCCTCTCCAGTATGGCAA+TGG | + | chr7_3:13129555-13129574 | Msa1093340:CDS | 50.0% | |
| TATGGCAATGGCCTCCCAAT+GGG | + | chr7_3:13129567-13129586 | Msa1093340:CDS | 50.0% | |
| CAGAAGGAGCTGTTCCCATT+GGG | - | chr7_3:13129584-13129603 | None:intergenic | 50.0% | |
| ACAACATCACACAAGCTCGC+TGG | - | chr7_3:13129902-13129921 | None:intergenic | 50.0% | |
| TTGTCTGCCACTGACGAGTG+TGG | + | chr7_3:13126551-13126570 | Msa1093340:five_prime_UTR | 55.0% | |
| GACGATTGTCGAGCAGAGTG+GGG | + | chr7_3:13128297-13128316 | Msa1093340:CDS | 55.0% | |
| ACGATTGTCGAGCAGAGTGG+GGG | + | chr7_3:13128298-13128317 | Msa1093340:CDS | 55.0% | |
| AATGTTAACGAGTGCCCCCG+GGG | + | chr7_3:13128439-13128458 | Msa1093340:intron | 55.0% | |
| CTTCTTAACCAATGCCCCGG+GGG | - | chr7_3:13128456-13128475 | None:intergenic | 55.0% | |
| GCTGCTTCTTTCCGTGAAGG+AGG | - | chr7_3:13129261-13129280 | None:intergenic | 55.0% | |
| GAAGTTCCCATAGATGGGGG+TGG | - | chr7_3:13129501-13129520 | None:intergenic | 55.0% | |
| GGCCATTGCCATACTGGAGA+GGG | - | chr7_3:13129560-13129579 | None:intergenic | 55.0% | |
| AGGCCATTGCCATACTGGAG+AGG | - | chr7_3:13129561-13129580 | None:intergenic | 55.0% | |
| TTGGGAGGCCATTGCCATAC+TGG | - | chr7_3:13129566-13129585 | None:intergenic | 55.0% | |
| GTATGGCAATGGCCTCCCAA+TGG | + | chr7_3:13129566-13129585 | Msa1093340:CDS | 55.0% | |
| AAGGAGCTGTTCCCATTGGG+AGG | - | chr7_3:13129581-13129600 | None:intergenic | 55.0% | |
| GCAGAAGGAGCTGTTCCCAT+TGG | - | chr7_3:13129585-13129604 | None:intergenic | 55.0% | |
| !! | GGGGGGACGAAGTTCTAAGG+AGG | + | chr7_3:13126971-13126990 | Msa1093340:CDS | 60.0% |
| CGCAGAGTGGCCCTTGATGA+TGG | + | chr7_3:13127167-13127186 | Msa1093340:CDS | 60.0% | |
| ACTGAGGCTCTTGGACGTGC+AGG | + | chr7_3:13127647-13127666 | Msa1093340:CDS | 60.0% | |
| TGGATGCCATTGTTCGGGCC+AGG | + | chr7_3:13128931-13128950 | Msa1093340:CDS | 60.0% | |
| GAGTCACCTGGCCCGAACAA+TGG | - | chr7_3:13128940-13128959 | None:intergenic | 60.0% | |
| TCCCTTGCCACCCCCATCTA+TGG | + | chr7_3:13129491-13129510 | Msa1093340:CDS | 60.0% | |
| CCCATAGATGGGGGTGGCAA+GGG | - | chr7_3:13129495-13129514 | None:intergenic | 60.0% | |
| CCCTTGCCACCCCCATCTAT+GGG | + | chr7_3:13129492-13129511 | Msa1093340:CDS | 60.0% | |
| TCCCATAGATGGGGGTGGCA+AGG | - | chr7_3:13129496-13129515 | None:intergenic | 60.0% | |
| AACGAGTGCCCCCGGGGCAT+TGG | + | chr7_3:13128445-13128464 | Msa1093340:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 13126226 | 13130002 | 13126226 | ID=Msa1093340;Name=Msa1093340 |
| chr7_3 | mRNA | 13126226 | 13130002 | 13126226 | ID=Msa1093340-mRNA-1;Parent=Msa1093340;Name=Msa1093340-mRNA-1;_AED=0.20;_eAED=0.20;_QI=743|0.88|0.9|0.9|1|1|10|0|425 |
| chr7_3 | exon | 13126226 | 13127247 | 13126226 | ID=Msa1093340-mRNA-1:exon:3068;Parent=Msa1093340-mRNA-1 |
| chr7_3 | exon | 13127644 | 13127728 | 13127644 | ID=Msa1093340-mRNA-1:exon:3069;Parent=Msa1093340-mRNA-1 |
| chr7_3 | exon | 13127819 | 13127959 | 13127819 | ID=Msa1093340-mRNA-1:exon:3070;Parent=Msa1093340-mRNA-1 |
| chr7_3 | exon | 13128056 | 13128169 | 13128056 | ID=Msa1093340-mRNA-1:exon:3071;Parent=Msa1093340-mRNA-1 |
| chr7_3 | exon | 13128260 | 13128357 | 13128260 | ID=Msa1093340-mRNA-1:exon:3072;Parent=Msa1093340-mRNA-1 |
| chr7_3 | exon | 13128873 | 13128952 | 13128873 | ID=Msa1093340-mRNA-1:exon:3073;Parent=Msa1093340-mRNA-1 |
| chr7_3 | exon | 13129031 | 13129136 | 13129031 | ID=Msa1093340-mRNA-1:exon:3074;Parent=Msa1093340-mRNA-1 |
| chr7_3 | exon | 13129222 | 13129349 | 13129222 | ID=Msa1093340-mRNA-1:exon:3075;Parent=Msa1093340-mRNA-1 |
| chr7_3 | exon | 13129458 | 13129629 | 13129458 | ID=Msa1093340-mRNA-1:exon:3076;Parent=Msa1093340-mRNA-1 |
| chr7_3 | exon | 13129928 | 13130002 | 13129928 | ID=Msa1093340-mRNA-1:exon:3077;Parent=Msa1093340-mRNA-1 |
| chr7_3 | five_prime_UTR | 13126226 | 13126968 | 13126226 | ID=Msa1093340-mRNA-1:five_prime_utr;Parent=Msa1093340-mRNA-1 |
| chr7_3 | CDS | 13126969 | 13127247 | 13126969 | ID=Msa1093340-mRNA-1:cds;Parent=Msa1093340-mRNA-1 |
| chr7_3 | CDS | 13127644 | 13127728 | 13127644 | ID=Msa1093340-mRNA-1:cds;Parent=Msa1093340-mRNA-1 |
| chr7_3 | CDS | 13127819 | 13127959 | 13127819 | ID=Msa1093340-mRNA-1:cds;Parent=Msa1093340-mRNA-1 |
| chr7_3 | CDS | 13128056 | 13128169 | 13128056 | ID=Msa1093340-mRNA-1:cds;Parent=Msa1093340-mRNA-1 |
| chr7_3 | CDS | 13128260 | 13128357 | 13128260 | ID=Msa1093340-mRNA-1:cds;Parent=Msa1093340-mRNA-1 |
| chr7_3 | CDS | 13128873 | 13128952 | 13128873 | ID=Msa1093340-mRNA-1:cds;Parent=Msa1093340-mRNA-1 |
| chr7_3 | CDS | 13129031 | 13129136 | 13129031 | ID=Msa1093340-mRNA-1:cds;Parent=Msa1093340-mRNA-1 |
| chr7_3 | CDS | 13129222 | 13129349 | 13129222 | ID=Msa1093340-mRNA-1:cds;Parent=Msa1093340-mRNA-1 |
| chr7_3 | CDS | 13129458 | 13129629 | 13129458 | ID=Msa1093340-mRNA-1:cds;Parent=Msa1093340-mRNA-1 |
| chr7_3 | CDS | 13129928 | 13130002 | 13129928 | ID=Msa1093340-mRNA-1:cds;Parent=Msa1093340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
