AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0181880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 239 sgRNAs with CRISPR-Local

Find 628 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATACTTGTATGGCTTCTT+TGG 0.197226 1_4:-70177799 Msa0181890:CDS
GGTGAACTGGGTAGGGGTGG+GGG 0.225879 1_4:-70177879 None:intergenic
TGGTAGTAGTATGGTTTCTT+AGG 0.244564 1_4:-70177469 Msa0181890:intron
TAGTGGTAAGGTGGTGAAAC+TGG 0.257312 1_4:-70177163 Msa0181890:three_prime_UTR
GAATATTTGTACGGCTTCTT+TGG 0.262619 1_4:-70177634 Msa0181890:intron
TGGTGAACTGGGTAGGGGTG+GGG 0.263067 1_4:-70177880 None:intergenic
TTCACCTCCACCACCTTCTA+AGG 0.264483 1_4:+70177102 Msa0181880:CDS
GAGTATTTGTATGGCTTCTT+TGG 0.268905 1_4:-70178132 None:intergenic
GGTGAGGAATACTTGTATTT+TGG 0.271768 1_4:-70178054 None:intergenic
GGGTAATGGTGGTGGGTTGG+TGG 0.282508 1_4:-70177952 None:intergenic
TGGTGGTGGGTTGGTGGTGG+TGG 0.282756 1_4:-70177946 None:intergenic
AATACTTGTATGGCTTCTTT+GGG 0.285921 1_4:-70177798 Msa0181890:CDS
GGAGAATGGTAGTAAGGTTT+AGG 0.286168 1_4:-70177604 Msa0181890:intron
AGTGGTGAACTGGGTAGGGG+TGG 0.287667 1_4:-70177882 None:intergenic
GGAGAGTGGTAGACTGGTTT+TGG 0.292973 1_4:-70178027 None:intergenic
TAAATTAAAGATCTATATAA+AGG 0.297130 1_4:+70176906 Msa0181880:five_prime_UTR
GAATACTTGTAAGGTTTCTT+TGG 0.301377 1_4:-70177556 Msa0181890:intron
GGTGGAGGAGAGTGATAAAC+TGG 0.309682 1_4:-70178432 None:intergenic
TAATGGTAAGGTGGTGAAAC+TGG 0.314166 1_4:-70177247 Msa0181890:three_prime_UTR
TAATGGTAAGGTGGTGAAAC+TGG 0.314166 1_4:-70177331 Msa0181890:CDS
TAATGGTAAGGTGGTGAAAC+TGG 0.314166 1_4:-70177415 Msa0181890:CDS
GGAGAGTGGTAGTAAGGTTT+AGG 0.315008 1_4:-70177688 Msa0181890:intron
GGATGAGGGTGTGGGTAGTA+TGG 0.323051 1_4:-70177718 Msa0181890:CDS
GGTGGTGGTGAGTGGTAAAC+TGG 0.327580 1_4:-70177985 None:intergenic
GGTGAGTGGTGAACTGGGTA+GGG 0.332847 1_4:-70177886 None:intergenic
GGTGAGTGGTAAACTGGGTG+GGG 0.334346 1_4:-70177979 None:intergenic
GGAGGAGGTGAATGGTAAAC+TGG 0.336861 1_4:-70177775 Msa0181890:CDS
TGGTGGTGGAGAGTGGTAGT+AGG 0.338332 1_4:-70178109 None:intergenic
GGAGAGTGGTAAATTGGTTT+TGG 0.341357 1_4:-70178378 None:intergenic
GGTGGTGGAGAGTGGTAAAT+TGG 0.341740 1_4:-70178384 None:intergenic
GGAGAGTGGTAAACTGGTTT+TGG 0.347919 1_4:-70178237 None:intergenic
GGAGAGTGGTAAACTGGTTT+TGG 0.347919 1_4:-70178285 None:intergenic
GGAGAGTGGTAAACTGGTTT+TGG 0.347919 1_4:-70178333 None:intergenic
GTGAGTGGTGAACTGGGTAG+GGG 0.348353 1_4:-70177885 None:intergenic
GATTAGGAGAAATTCTAATA+TGG 0.357686 1_4:+70176857 None:intergenic
TGGGTTGGTGGTGGTGGAGA+TGG 0.357983 1_4:-70177940 None:intergenic
GGAGTGTAGGGAGGGTGAAC+TGG 0.359309 1_4:-70178264 None:intergenic
GGAGTGTAGGGAGGGTGAAC+TGG 0.359309 1_4:-70178357 None:intergenic
TAATGGTGGTGGGTTGGTGG+TGG 0.362480 1_4:-70177949 None:intergenic
GGTGGTGGAGAGTGGTAAAC+TGG 0.362881 1_4:-70178195 None:intergenic
GTGGTGAACTGGGTAGGGGT+GGG 0.367000 1_4:-70177881 None:intergenic
GGTTTCTTTGGTGGTGGAGG+TGG 0.368345 1_4:-70177544 Msa0181890:intron
GGATATTTCTTGGGTGGTGG+TGG 0.369617 1_4:-70177361 Msa0181890:CDS
AGGTGAGTGGTGAACTGGGT+AGG 0.371910 1_4:-70177887 None:intergenic
CCCACTATCTAGTGAGGTTA+AGG 0.372842 1_4:+70176962 Msa0181880:five_prime_UTR
TGAGGGTGTGGGTAGTATGG+AGG 0.378864 1_4:-70177715 Msa0181890:CDS
GAGAGTGGTAGTAAGGTTTA+GGG 0.379427 1_4:-70177687 Msa0181890:intron
GGGTGTGGGTAGTATGGAGG+TGG 0.383520 1_4:-70177712 Msa0181890:CDS
GGAGTGTATGGAGGGTGAAC+TGG 0.383709 1_4:-70178006 None:intergenic
GGAGTGTATGGAGGGTGAAC+TGG 0.383709 1_4:-70178216 None:intergenic
GGAGTGTATGGAGGGTGAAC+TGG 0.383709 1_4:-70178312 None:intergenic
GGAGAGTGGTAGTAGGGCTT+AGG 0.386789 1_4:-70178102 None:intergenic
ACCTTTGGTGGTGGTGAGAC+TGG 0.390542 1_4:-70177133 Msa0181890:three_prime_UTR
TGAGGGTAATGGTGGTGGGT+TGG 0.390821 1_4:-70177955 None:intergenic
GTGGTGAGTGGTAAACTGGG+TGG 0.391529 1_4:-70177981 None:intergenic
TCTTTGGTGGTGGTGGAGAA+TGG 0.397572 1_4:-70177618 Msa0181890:intron
ACTGGAGGGTACACCTTAGA+AGG 0.398297 1_4:-70177115 Msa0181890:three_prime_UTR
GGAGAATGAACTGGTGGTGG+AGG 0.403581 1_4:-70178159 None:intergenic
GGGTGTGGATAAGGGTGATA+TGG 0.405849 1_4:-70177835 None:intergenic
GGTGGAGAGTGGTAGTAGTA+TGG 0.409035 1_4:-70177478 Msa0181890:intron
GTACTACTAGGTAATAAATA+AGG 0.413097 1_4:+70176883 Msa0181880:five_prime_UTR
GGTGGTGGAGAGTGGTAGTA+GGG 0.413612 1_4:-70178108 None:intergenic
TTGTAAGGTTTCTTTGGTGG+TGG 0.416526 1_4:-70177550 Msa0181890:intron
GAATGTGGAGGATATTTCTT+GGG 0.418597 1_4:-70177370 Msa0181890:CDS
GGGGTGAGGGTAATGGTGGT+GGG 0.425415 1_4:-70177959 None:intergenic
GTGTGGGTAGTATGGAGGTG+GGG 0.426235 1_4:-70177710 Msa0181890:CDS
GAGAATGGTAGTAAGGTTTA+GGG 0.428510 1_4:-70177603 Msa0181890:intron
GGAGGGGATGAGTATTTGTA+TGG 0.431240 1_4:-70178141 None:intergenic
GGTGGTGGAGAGTGGTAGAC+TGG 0.431296 1_4:-70178033 None:intergenic
TATGGCTTCTTTGGTGGTGG+TGG 0.434017 1_4:-70178123 None:intergenic
TAAGGTTTCTTTGGTGGTGG+AGG 0.434595 1_4:-70177547 Msa0181890:intron
GTGAGTGGTAAACTGGGTGG+GGG 0.436726 1_4:-70177978 None:intergenic
GGAGGAGAAGAATACTTGTA+AGG 0.436950 1_4:-70177565 Msa0181890:intron
ATAAACTGGGTGAGGAGTGT+AGG 0.440769 1_4:-70178418 None:intergenic
TAGGGAGGGTGAACTGGTGG+TGG 0.443256 1_4:-70178258 None:intergenic
GGAGTGTAGGGAGGATGAAC+TGG 0.445502 1_4:-70178405 None:intergenic
TACGGCTTCTTTGGTGGTGG+TGG 0.446393 1_4:-70177625 Msa0181890:intron
GGAGGTGAGTAAACCGGTGG+GGG 0.447011 1_4:-70177499 Msa0181890:intron
GCCTTAACCTCACTAGATAG+TGG 0.449214 1_4:-70176963 None:intergenic
TGGTGAGTGGTAAACTGGGT+GGG 0.461465 1_4:-70177980 None:intergenic
TGAATGTGGAGGATATTTCT+TGG 0.465455 1_4:-70177371 Msa0181890:CDS
GGTGTGGGTAGTATGGAGGT+GGG 0.467258 1_4:-70177711 Msa0181890:CDS
TAAACTGGGTGTGGAATGTA+TGG 0.467690 1_4:-70178180 None:intergenic
TAAGGTTTAGGGTGCACATA+TGG 0.469133 1_4:-70177592 Msa0181890:intron
ACCTTGGGTGGTGGTGAATG+TGG 0.471435 1_4:-70177301 Msa0181890:CDS
ACCTTGGGTGGTGGTGAATG+TGG 0.471435 1_4:-70177385 Msa0181890:CDS
TGCTGAAATTTGAGATGGTA+TGG 0.471902 1_4:-70177062 Msa0181890:three_prime_UTR
TGTGGGTAGTATGGAGGTGG+GGG 0.475070 1_4:-70177709 Msa0181890:CDS
AAATTAAAGATCTATATAAA+GGG 0.475079 1_4:+70176907 Msa0181880:five_prime_UTR
TTGTATGGCTTCTTTGGTGG+TGG 0.477951 1_4:-70178126 None:intergenic
GGGGAGGTGAGTGGTGAACT+GGG 0.478439 1_4:-70177891 None:intergenic
TATTTGTACGGCTTCTTTGG+TGG 0.480151 1_4:-70177631 Msa0181890:intron
GGAGGAGGAGGTGAGTAAAC+CGG 0.483046 1_4:-70177505 Msa0181890:intron
GAGAATGAACTGGTGGTGGA+GGG 0.483722 1_4:-70178158 None:intergenic
GGTGGTGGAGAATGGTAGTA+AGG 0.485765 1_4:-70177610 Msa0181890:intron
GGTGGTGGAGAGTGGTAAAC+TGG 0.486764 1_4:-70178243 None:intergenic
GGTGGTGGAGAGTGGTAAAC+TGG 0.486764 1_4:-70178291 None:intergenic
TACTTGTAAGGTTTCTTTGG+TGG 0.487008 1_4:-70177553 Msa0181890:intron
GGTGGAGATGGATACTTGTA+AGG 0.488355 1_4:-70177928 None:intergenic
GAAACTGGAGGGTACACCTT+GGG 0.488549 1_4:-70177316 Msa0181890:CDS
GAAACTGGAGGGTACACCTT+GGG 0.488549 1_4:-70177400 Msa0181890:CDS
TATGGAGGGTGAACTGGTGG+TGG 0.489020 1_4:-70178210 None:intergenic
TATGGAGGGTGAACTGGTGG+TGG 0.489020 1_4:-70178306 None:intergenic
ACTGGTGGAGAGTGGTAAAC+TGG 0.489937 1_4:-70178339 None:intergenic
GGAGAGTGATAAACTGGGTG+AGG 0.490907 1_4:-70178426 None:intergenic
GAAACTGGAGGGTACACCTT+TGG 0.494998 1_4:-70177148 Msa0181890:three_prime_UTR
GGAGGATATTTCTTGGGTGG+TGG 0.495201 1_4:-70177364 Msa0181890:CDS
TTAGGGCTGACGTGATGCAC+TGG 0.495916 1_4:-70178084 None:intergenic
CTAATATGGTTAGTACTACT+AGG 0.496183 1_4:+70176871 Msa0181880:five_prime_UTR
CTGTAATGGTAGGGAGGAGG+AGG 0.496675 1_4:-70177517 Msa0181890:intron
GTGTATGGAGGGTGAACTGG+TGG 0.496940 1_4:-70178003 None:intergenic
GTGTATGGAGGGTGAACTGG+TGG 0.496940 1_4:-70178213 None:intergenic
GTGTAGGGAGGGTGAACTGG+TGG 0.496940 1_4:-70178261 None:intergenic
GTGTATGGAGGGTGAACTGG+TGG 0.496940 1_4:-70178309 None:intergenic
GGGTACACCTTAGGTGGTGG+TGG 0.497704 1_4:-70177277 Msa0181890:exon
GGAGAGTGGTAAACTGGGTG+TGG 0.497732 1_4:-70178189 None:intergenic
GGAGGAGGTGAGTAAACCGG+TGG 0.497826 1_4:-70177502 Msa0181890:intron
GGTGAACTGGTGGTGGAGAG+TGG 0.500151 1_4:-70178203 None:intergenic
GGTGAACTGGTGGTGGAGAG+TGG 0.500151 1_4:-70178251 None:intergenic
GGTGAACTGGTGGTGGAGAG+TGG 0.500151 1_4:-70178299 None:intergenic
TAGTAGTATGGTTTCTTAGG+TGG 0.500362 1_4:-70177466 Msa0181890:intron
CTCTTCACCACCACCTCCTA+AGG 0.503282 1_4:+70177186 Msa0181880:CDS
CTCTTCACCACCACCACCTA+AGG 0.503282 1_4:+70177270 Msa0181880:CDS
AGGTGAATGGTAAACTGGAT+GGG 0.503579 1_4:-70177770 Msa0181890:CDS
GAATGTGGAGGGTACACCTT+AGG 0.503938 1_4:-70177286 Msa0181890:exon
GGTGAGTACACTGGTGGTGG+TGG 0.504002 1_4:-70177445 Msa0181890:CDS
GGTGAACTGGTGGTGGTGAG+TGG 0.508212 1_4:-70177993 None:intergenic
TATTTGTATGGCTTCTTTGG+TGG 0.508573 1_4:-70178129 None:intergenic
TAAGGGTGATATGGAGGTGG+AGG 0.508753 1_4:-70177826 None:intergenic
GTGGAGGTGGTGAACTGTAA+TGG 0.511412 1_4:-70177531 Msa0181890:intron
GAGAGTGGTAGTAGGGCTTA+GGG 0.513601 1_4:-70178101 None:intergenic
TAAACTGGGTGAGGAGTGTA+GGG 0.516846 1_4:-70178417 None:intergenic
TAGGGAGGATGAACTGGTGG+TGG 0.517835 1_4:-70178399 None:intergenic
TATGGAGGGTGAACTGGTGG+TGG 0.521794 1_4:-70178000 None:intergenic
GGAGGAGATGAATACTTGTA+TGG 0.523317 1_4:-70177808 Msa0181890:CDS
TAGAAGAGTCAAAGTGGCAG+AGG 0.523614 1_4:-70177020 Msa0181890:three_prime_UTR
CTGACGTGATGCACTGGTGG+TGG 0.525210 1_4:-70178078 None:intergenic
GAACTGTAATGGTAGGGAGG+AGG 0.525424 1_4:-70177520 Msa0181890:intron
GATGAACTGGTGGTGGAGAG+TGG 0.526052 1_4:-70178392 None:intergenic
TGTGGAGGATATTTCTTGGG+TGG 0.526885 1_4:-70177367 Msa0181890:CDS
TCTTTGGTGGTGGTGGAGAG+TGG 0.526919 1_4:-70178116 None:intergenic
GAGGTGAATGGTAAACTGGA+TGG 0.530260 1_4:-70177771 Msa0181890:CDS
ACATAATGCACTGGTGGAGG+AGG 0.531309 1_4:-70177661 Msa0181890:intron
GTGTAGGGAGGGTGAACTGG+TGG 0.533136 1_4:-70178354 None:intergenic
TTGGGTGGTGGTGAATGTGG+AGG 0.534949 1_4:-70177298 Msa0181890:CDS
GGTGAATGGTAAACTGGATG+GGG 0.542361 1_4:-70177769 Msa0181890:CDS
GCATAGATGTAACTGTGAAC+TGG 0.542645 1_4:-70178456 None:intergenic
GAGGGTGAACTGGTGGAGAG+TGG 0.544075 1_4:-70178347 None:intergenic
AGAATGAACTGGTGGTGGAG+GGG 0.544221 1_4:-70178157 None:intergenic
ACGTGATGCACTGGTGGTGG+TGG 0.544438 1_4:-70178075 None:intergenic
TATGGAGAATGAACTGGTGG+TGG 0.547301 1_4:-70178162 None:intergenic
TCCAGTCTCACCACCACCAA+AGG 0.547428 1_4:+70177132 Msa0181880:CDS
CCTTAACCTCACTAGATAGT+GGG 0.550486 1_4:-70176962 None:intergenic
GGGTGCACATATGGTGGAGG+AGG 0.551075 1_4:-70177583 Msa0181890:intron
GGTGGTGAGTACACTGGTGG+TGG 0.551187 1_4:-70177448 Msa0181890:CDS
GGTGGTGAAGAGTAGTGGTA+AGG 0.551515 1_4:-70177175 Msa0181890:three_prime_UTR
ACTGGAGGGTACACCTTTGG+TGG 0.558296 1_4:-70177145 Msa0181890:three_prime_UTR
ATGTAACTGTGAACTGGTGG+TGG 0.559351 1_4:-70178450 None:intergenic
TTAGGGCTTACATAATGCAC+TGG 0.559638 1_4:-70177670 Msa0181890:intron
TGGGTGGTGGTGAATGTGGA+GGG 0.560943 1_4:-70177297 Msa0181890:CDS
TACTTGTATGGCTTCTTTGG+GGG 0.561140 1_4:-70177796 Msa0181890:CDS
TTGTACGGCTTCTTTGGTGG+TGG 0.561421 1_4:-70177628 Msa0181890:intron
ATCTAAGAGTGGTAAGGAGG+GGG 0.561694 1_4:-70178486 None:intergenic
GGATAAGGGTGATATGGAGG+TGG 0.563177 1_4:-70177829 None:intergenic
AGGTGGTGAACTGTAATGGT+AGG 0.563748 1_4:-70177527 Msa0181890:intron
TTGGTGGTGGTGAGACTGGA+GGG 0.563876 1_4:-70177129 Msa0181890:three_prime_UTR
TGTGGATAAGGGTGATATGG+AGG 0.565091 1_4:-70177832 None:intergenic
CTTACATAATGCACTGGTGG+AGG 0.565431 1_4:-70177664 Msa0181890:intron
ACTATCTAAGAGTGGTAAGG+AGG 0.566515 1_4:-70178489 None:intergenic
GGAGGGTACACCTTGGGTGG+TGG 0.570778 1_4:-70177310 Msa0181890:CDS
GGAGGGTACACCTTGGGTGG+TGG 0.570778 1_4:-70177394 Msa0181890:CDS
TCCACTATCTAAGAGTGGTA+AGG 0.572337 1_4:-70178492 None:intergenic
GGAGGAGAGGAATATTTGTA+CGG 0.574653 1_4:-70177643 Msa0181890:intron
ATACTTGTATGGCTTCTTTG+GGG 0.577791 1_4:-70177797 Msa0181890:CDS
TCCACATTCACCACCACCCA+AGG 0.577927 1_4:+70177300 Msa0181880:CDS
TCCACATTCACCACCACCCA+AGG 0.577927 1_4:+70177384 Msa0181880:CDS
GGAGGGTACACCTTAGGTGG+TGG 0.577996 1_4:-70177280 Msa0181890:exon
GTGGTGGTGAGTGGTAAACT+GGG 0.578895 1_4:-70177984 None:intergenic
CTATCTAAGAGTGGTAAGGA+GGG 0.579566 1_4:-70178488 None:intergenic
GGTGGTGAACTGTAATGGTA+GGG 0.584645 1_4:-70177526 Msa0181890:intron
AGCTAATAGAAGAGTCAAAG+TGG 0.586530 1_4:-70177026 Msa0181890:three_prime_UTR
GAGGTGGTGGTGAAGAGTAG+TGG 0.590130 1_4:-70177180 Msa0181890:three_prime_UTR
GGGCTTACATAATGCACTGG+TGG 0.591630 1_4:-70177667 Msa0181890:intron
TCTATATAAAGGGCATCACT+TGG 0.592543 1_4:+70176917 Msa0181880:five_prime_UTR
TTTGGTGGTGGTGAGACTGG+AGG 0.593407 1_4:-70177130 Msa0181890:three_prime_UTR
GTGGTGGTGGTGAAGAGTAA+TGG 0.593633 1_4:-70177348 Msa0181890:CDS
CTGTTTGCTGAAATTTGAGA+TGG 0.594879 1_4:-70177067 Msa0181890:three_prime_UTR
GGGTACACCTTAGGAGGTGG+TGG 0.595120 1_4:-70177193 Msa0181890:three_prime_UTR
TTCTTAGGTGGTGAGTACAC+TGG 0.595266 1_4:-70177454 Msa0181890:intron
TAACTGTGAACTGGTGGTGG+AGG 0.595411 1_4:-70178447 None:intergenic
GGGTACACCTTAGAAGGTGG+TGG 0.595568 1_4:-70177109 Msa0181890:three_prime_UTR
GGAGGGTACACCTTAGGAGG+TGG 0.596763 1_4:-70177196 Msa0181890:three_prime_UTR
TGTGGAGGGTACACCTTAGG+AGG 0.598517 1_4:-70177199 Msa0181890:three_prime_UTR
ACTGGAGGGTACACCTTGGG+TGG 0.601835 1_4:-70177313 Msa0181890:CDS
ACTGGAGGGTACACCTTGGG+TGG 0.601835 1_4:-70177397 Msa0181890:CDS
GGTGAACTGTAATGGTAGGG+AGG 0.603039 1_4:-70177523 Msa0181890:intron
ATGCACTGGTGGAGGAGGAG+AGG 0.604278 1_4:-70177656 Msa0181890:intron
GGAGGGTACACCTTTGGTGG+TGG 0.604556 1_4:-70177142 Msa0181890:three_prime_UTR
GGTTTAGGGTGCACATATGG+TGG 0.604595 1_4:-70177589 Msa0181890:intron
GGTGGTGAAGAGTAATGGTA+AGG 0.608369 1_4:-70177259 Msa0181890:three_prime_UTR
GGTGGTGAAGAGTAATGGTA+AGG 0.608369 1_4:-70177343 Msa0181890:CDS
GGTGGTGAAGAGTAATGGTA+AGG 0.608369 1_4:-70177427 Msa0181890:CDS
TACACCTTAGAAGGTGGTGG+AGG 0.609157 1_4:-70177106 Msa0181890:three_prime_UTR
ACTGGGTGAGGAGTGTAGGG+AGG 0.612762 1_4:-70178414 None:intergenic
GTGGTGGTGGTGAAGAGTAA+TGG 0.616050 1_4:-70177432 Msa0181890:CDS
GGTAAGGTGGTGAAACTGGA+GGG 0.616234 1_4:-70177159 Msa0181890:three_prime_UTR
GGTAAGGTGGTGAAACTGGA+GGG 0.616234 1_4:-70177243 Msa0181890:three_prime_UTR
GGTAAGGTGGTGAAACTGGA+GGG 0.616234 1_4:-70177327 Msa0181890:CDS
GGTAAGGTGGTGAAACTGGA+GGG 0.616234 1_4:-70177411 Msa0181890:CDS
GGAATGTATGGAGAATGAAC+TGG 0.621413 1_4:-70178168 None:intergenic
CAAAATCCCACTATCTAGTG+AGG 0.623839 1_4:+70176956 Msa0181880:five_prime_UTR
TATCTAAGAGTGGTAAGGAG+GGG 0.628850 1_4:-70178487 None:intergenic
TTAGGGTGCACATATGGTGG+AGG 0.630354 1_4:-70177586 Msa0181890:intron
GGTGAAGAGTAGTGGTAAGG+TGG 0.632185 1_4:-70177172 Msa0181890:three_prime_UTR
TGTGGAGGGTACACCTTAGG+TGG 0.633211 1_4:-70177283 Msa0181890:exon
GTGAATGGTAAACTGGATGG+GGG 0.635596 1_4:-70177768 Msa0181890:CDS
GTGTAGGGAGGATGAACTGG+TGG 0.638668 1_4:-70178402 None:intergenic
ATGCACTGGTGGTGGTGGTG+AGG 0.641193 1_4:-70178070 None:intergenic
TGGTAAGGTGGTGAAACTGG+AGG 0.644937 1_4:-70177160 Msa0181890:three_prime_UTR
TGGTAAGGTGGTGAAACTGG+AGG 0.644937 1_4:-70177244 Msa0181890:three_prime_UTR
TGGTAAGGTGGTGAAACTGG+AGG 0.644937 1_4:-70177328 Msa0181890:CDS
TGGTAAGGTGGTGAAACTGG+AGG 0.644937 1_4:-70177412 Msa0181890:CDS
GGGCTGACGTGATGCACTGG+TGG 0.647399 1_4:-70178081 None:intergenic
GTGGTGGTGGTGAAGAGTAA+TGG 0.649884 1_4:-70177264 Msa0181890:three_prime_UTR
AATCATCCACTATCTAAGAG+TGG 0.654465 1_4:-70178497 None:intergenic
GAGGAGGTGAGTAAACCGGT+GGG 0.655050 1_4:-70177501 Msa0181890:intron
GTGGAGGAGAGTGATAAACT+GGG 0.658215 1_4:-70178431 None:intergenic
GGTGAAGAGTAATGGTAAGG+TGG 0.662907 1_4:-70177256 Msa0181890:three_prime_UTR
GGTGAAGAGTAATGGTAAGG+TGG 0.662907 1_4:-70177340 Msa0181890:CDS
GGTGAAGAGTAATGGTAAGG+TGG 0.662907 1_4:-70177424 Msa0181890:CDS
TGAAACTGGAGGGTACACCT+TGG 0.668113 1_4:-70177317 Msa0181890:CDS
TGAAACTGGAGGGTACACCT+TGG 0.668113 1_4:-70177401 Msa0181890:CDS
TTAGGTGGTGAGTACACTGG+TGG 0.669122 1_4:-70177451 Msa0181890:intron
TTGGGTGGTGGTGAATGTGG+AGG 0.669364 1_4:-70177382 Msa0181890:CDS
GTGGTGGAGAGTGGTAAACT+GGG 0.672028 1_4:-70178194 None:intergenic
GGAGGGTACACCTTAGAAGG+TGG 0.699090 1_4:-70177112 Msa0181890:three_prime_UTR
AGGAGGTGAGTAAACCGGTG+GGG 0.708544 1_4:-70177500 Msa0181890:intron
ATGTATGGAGAATGAACTGG+TGG 0.718696 1_4:-70178165 None:intergenic
TAGATGTAACTGTGAACTGG+TGG 0.730709 1_4:-70178453 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTAAAGATCTATATAA+AGG + chr1_4:70176906-70176925 Msa0181880:five_prime_UTR 10.0%
!! AAATTAAAGATCTATATAAA+GGG + chr1_4:70176907-70176926 Msa0181880:five_prime_UTR 10.0%
!! TAAATTAAAGATCTATATAA+AGG + chr1_4:70176906-70176925 Msa0181880:five_prime_UTR 10.0%
!! AAATTAAAGATCTATATAAA+GGG + chr1_4:70176907-70176926 Msa0181880:five_prime_UTR 10.0%
! GTACTACTAGGTAATAAATA+AGG + chr1_4:70176883-70176902 Msa0181880:five_prime_UTR 25.0%
! ACAAGAGAACAAAAAAAATG+AGG + chr1_4:70176987-70177006 Msa0181880:exon 25.0%
! AAAAAAAATGAGGTCTTCAA+TGG + chr1_4:70176997-70177016 Msa0181880:exon 25.0%
! GTACTACTAGGTAATAAATA+AGG + chr1_4:70176883-70176902 Msa0181880:five_prime_UTR 25.0%
! ACAAGAGAACAAAAAAAATG+AGG + chr1_4:70176987-70177006 Msa0181880:exon 25.0%
! AAAAAAAATGAGGTCTTCAA+TGG + chr1_4:70176997-70177016 Msa0181880:exon 25.0%
CTAATATGGTTAGTACTACT+AGG + chr1_4:70176871-70176890 Msa0181880:five_prime_UTR 30.0%
GAATACTTGTAAGGTTTCTT+TGG - chr1_4:70177559-70177578 Msa0181890:intron 30.0%
AATACTTGTATGGCTTCTTT+GGG - chr1_4:70177801-70177820 Msa0181890:CDS 30.0%
!!! TGTAAGGTTTTTTAGGTGAT+GGG - chr1_4:70177915-70177934 None:intergenic 30.0%
!!! TTGTAAGGTTTTTTAGGTGA+TGG - chr1_4:70177916-70177935 None:intergenic 30.0%
!!! GGATACTTGTAAGGTTTTTT+AGG - chr1_4:70177922-70177941 None:intergenic 30.0%
!!! TAAATTGGTTTTGGAGTGTA+GGG - chr1_4:70178372-70178391 None:intergenic 30.0%
CTAATATGGTTAGTACTACT+AGG + chr1_4:70176871-70176890 Msa0181880:five_prime_UTR 30.0%
GAATACTTGTAAGGTTTCTT+TGG - chr1_4:70177559-70177578 Msa0181890:intron 30.0%
AATACTTGTATGGCTTCTTT+GGG - chr1_4:70177801-70177820 Msa0181890:CDS 30.0%
!!! TGTAAGGTTTTTTAGGTGAT+GGG - chr1_4:70177915-70177934 None:intergenic 30.0%
!!! TTGTAAGGTTTTTTAGGTGA+TGG - chr1_4:70177916-70177935 None:intergenic 30.0%
!!! GGATACTTGTAAGGTTTTTT+AGG - chr1_4:70177922-70177941 None:intergenic 30.0%
!!! TAAATTGGTTTTGGAGTGTA+GGG - chr1_4:70178372-70178391 None:intergenic 30.0%
!! TCTATATAAAGGGCATCACT+TGG + chr1_4:70176917-70176936 Msa0181880:five_prime_UTR 35.0%
AGCTAATAGAAGAGTCAAAG+TGG - chr1_4:70177029-70177048 Msa0181890:three_prime_UTR 35.0%
! TGCTGAAATTTGAGATGGTA+TGG - chr1_4:70177065-70177084 Msa0181890:three_prime_UTR 35.0%
! CTGTTTGCTGAAATTTGAGA+TGG - chr1_4:70177070-70177089 Msa0181890:three_prime_UTR 35.0%
GAATGTGGAGGATATTTCTT+GGG - chr1_4:70177373-70177392 Msa0181890:CDS 35.0%
TGAATGTGGAGGATATTTCT+TGG - chr1_4:70177374-70177393 Msa0181890:CDS 35.0%
TAGTAGTATGGTTTCTTAGG+TGG - chr1_4:70177469-70177488 Msa0181890:intron 35.0%
TGGTAGTAGTATGGTTTCTT+AGG - chr1_4:70177472-70177491 Msa0181890:intron 35.0%
TACTTGTAAGGTTTCTTTGG+TGG - chr1_4:70177556-70177575 Msa0181890:intron 35.0%
GAGAATGGTAGTAAGGTTTA+GGG - chr1_4:70177606-70177625 Msa0181890:intron 35.0%
GAATATTTGTACGGCTTCTT+TGG - chr1_4:70177637-70177656 Msa0181890:intron 35.0%
ATACTTGTATGGCTTCTTTG+GGG - chr1_4:70177800-70177819 Msa0181890:CDS 35.0%
GAATACTTGTATGGCTTCTT+TGG - chr1_4:70177802-70177821 Msa0181890:CDS 35.0%
!!! TAAGGTTTTTTAGGTGATGG+GGG - chr1_4:70177913-70177932 None:intergenic 35.0%
!!! GTAAGGTTTTTTAGGTGATG+GGG - chr1_4:70177914-70177933 None:intergenic 35.0%
!!! GAATACTTGTATTTTGGTGG+TGG - chr1_4:70178051-70178070 None:intergenic 35.0%
!! GAGGAATACTTGTATTTTGG+TGG - chr1_4:70178054-70178073 None:intergenic 35.0%
! GGTGAGGAATACTTGTATTT+TGG - chr1_4:70178057-70178076 None:intergenic 35.0%
TATTTGTATGGCTTCTTTGG+TGG - chr1_4:70178132-70178151 None:intergenic 35.0%
GAGTATTTGTATGGCTTCTT+TGG - chr1_4:70178135-70178154 None:intergenic 35.0%
!!! TAAACTGGTTTTGGAGTGTA+TGG - chr1_4:70178231-70178250 None:intergenic 35.0%
!!! TAAACTGGTTTTGGAGTGTA+GGG - chr1_4:70178231-70178250 None:intergenic 35.0%
!!! TAAACTGGTTTTGGAGTGTA+TGG - chr1_4:70178231-70178250 None:intergenic 35.0%
!!! GTAAATTGGTTTTGGAGTGT+AGG - chr1_4:70178373-70178392 None:intergenic 35.0%
!! TCTATATAAAGGGCATCACT+TGG + chr1_4:70176917-70176936 Msa0181880:five_prime_UTR 35.0%
AGCTAATAGAAGAGTCAAAG+TGG - chr1_4:70177029-70177048 Msa0181890:three_prime_UTR 35.0%
! TGCTGAAATTTGAGATGGTA+TGG - chr1_4:70177065-70177084 Msa0181890:three_prime_UTR 35.0%
! CTGTTTGCTGAAATTTGAGA+TGG - chr1_4:70177070-70177089 Msa0181890:three_prime_UTR 35.0%
GAATGTGGAGGATATTTCTT+GGG - chr1_4:70177373-70177392 Msa0181890:CDS 35.0%
TGAATGTGGAGGATATTTCT+TGG - chr1_4:70177374-70177393 Msa0181890:CDS 35.0%
TAGTAGTATGGTTTCTTAGG+TGG - chr1_4:70177469-70177488 Msa0181890:intron 35.0%
TGGTAGTAGTATGGTTTCTT+AGG - chr1_4:70177472-70177491 Msa0181890:intron 35.0%
TACTTGTAAGGTTTCTTTGG+TGG - chr1_4:70177556-70177575 Msa0181890:intron 35.0%
GAGAATGGTAGTAAGGTTTA+GGG - chr1_4:70177606-70177625 Msa0181890:intron 35.0%
GAATATTTGTACGGCTTCTT+TGG - chr1_4:70177637-70177656 Msa0181890:intron 35.0%
ATACTTGTATGGCTTCTTTG+GGG - chr1_4:70177800-70177819 Msa0181890:CDS 35.0%
GAATACTTGTATGGCTTCTT+TGG - chr1_4:70177802-70177821 Msa0181890:CDS 35.0%
!!! TAAGGTTTTTTAGGTGATGG+GGG - chr1_4:70177913-70177932 None:intergenic 35.0%
!!! GTAAGGTTTTTTAGGTGATG+GGG - chr1_4:70177914-70177933 None:intergenic 35.0%
!!! GAATACTTGTATTTTGGTGG+TGG - chr1_4:70178051-70178070 None:intergenic 35.0%
!! GAGGAATACTTGTATTTTGG+TGG - chr1_4:70178054-70178073 None:intergenic 35.0%
! GGTGAGGAATACTTGTATTT+TGG - chr1_4:70178057-70178076 None:intergenic 35.0%
TATTTGTATGGCTTCTTTGG+TGG - chr1_4:70178132-70178151 None:intergenic 35.0%
GAGTATTTGTATGGCTTCTT+TGG - chr1_4:70178135-70178154 None:intergenic 35.0%
!!! TAAACTGGTTTTGGAGTGTA+TGG - chr1_4:70178231-70178250 None:intergenic 35.0%
!!! TAAACTGGTTTTGGAGTGTA+GGG - chr1_4:70178231-70178250 None:intergenic 35.0%
!!! TAAACTGGTTTTGGAGTGTA+TGG - chr1_4:70178231-70178250 None:intergenic 35.0%
!!! GTAAATTGGTTTTGGAGTGT+AGG - chr1_4:70178373-70178392 None:intergenic 35.0%
CAAAATCCCACTATCTAGTG+AGG + chr1_4:70176956-70176975 Msa0181880:five_prime_UTR 40.0%
CCTTAACCTCACTAGATAGT+GGG - chr1_4:70176965-70176984 None:intergenic 40.0%
TAATGGTAAGGTGGTGAAAC+TGG - chr1_4:70177250-70177269 Msa0181890:three_prime_UTR 40.0%
TAATGGTAAGGTGGTGAAAC+TGG - chr1_4:70177250-70177269 Msa0181890:three_prime_UTR 40.0%
TAATGGTAAGGTGGTGAAAC+TGG - chr1_4:70177250-70177269 Msa0181890:three_prime_UTR 40.0%
TTGTAAGGTTTCTTTGGTGG+TGG - chr1_4:70177553-70177572 Msa0181890:intron 40.0%
GGAGGAGAAGAATACTTGTA+AGG - chr1_4:70177568-70177587 Msa0181890:intron 40.0%
! TAAGGTTTAGGGTGCACATA+TGG - chr1_4:70177595-70177614 Msa0181890:intron 40.0%
GGAGAATGGTAGTAAGGTTT+AGG - chr1_4:70177607-70177626 Msa0181890:intron 40.0%
TATTTGTACGGCTTCTTTGG+TGG - chr1_4:70177634-70177653 Msa0181890:intron 40.0%
GGAGGAGAGGAATATTTGTA+CGG - chr1_4:70177646-70177665 Msa0181890:intron 40.0%
TTAGGGCTTACATAATGCAC+TGG - chr1_4:70177673-70177692 Msa0181890:intron 40.0%
GAGAGTGGTAGTAAGGTTTA+GGG - chr1_4:70177690-70177709 Msa0181890:intron 40.0%
AGGTGAATGGTAAACTGGAT+GGG - chr1_4:70177773-70177792 Msa0181890:CDS 40.0%
TACTTGTATGGCTTCTTTGG+GGG - chr1_4:70177799-70177818 Msa0181890:CDS 40.0%
GGAGGAGATGAATACTTGTA+TGG - chr1_4:70177811-70177830 Msa0181890:CDS 40.0%
!!! TAGACTGGTTTTGGAGTGTA+TGG - chr1_4:70178021-70178040 None:intergenic 40.0%
ATGTATGGAGAATGAACTGG+TGG - chr1_4:70178168-70178187 None:intergenic 40.0%
GGAATGTATGGAGAATGAAC+TGG - chr1_4:70178171-70178190 None:intergenic 40.0%
TAAACTGGGTGTGGAATGTA+TGG - chr1_4:70178183-70178202 None:intergenic 40.0%
!!! GTAAACTGGTTTTGGAGTGT+AGG - chr1_4:70178232-70178251 None:intergenic 40.0%
!! GGAGAGTGGTAAATTGGTTT+TGG - chr1_4:70178381-70178400 None:intergenic 40.0%
TAGATGTAACTGTGAACTGG+TGG - chr1_4:70178456-70178475 None:intergenic 40.0%
GCATAGATGTAACTGTGAAC+TGG - chr1_4:70178459-70178478 None:intergenic 40.0%
CAAAATCCCACTATCTAGTG+AGG + chr1_4:70176956-70176975 Msa0181880:five_prime_UTR 40.0%
CCTTAACCTCACTAGATAGT+GGG - chr1_4:70176965-70176984 None:intergenic 40.0%
TAATGGTAAGGTGGTGAAAC+TGG - chr1_4:70177250-70177269 Msa0181890:three_prime_UTR 40.0%
TAATGGTAAGGTGGTGAAAC+TGG - chr1_4:70177250-70177269 Msa0181890:three_prime_UTR 40.0%
TAATGGTAAGGTGGTGAAAC+TGG - chr1_4:70177250-70177269 Msa0181890:three_prime_UTR 40.0%
TTGTAAGGTTTCTTTGGTGG+TGG - chr1_4:70177553-70177572 Msa0181890:intron 40.0%
GGAGGAGAAGAATACTTGTA+AGG - chr1_4:70177568-70177587 Msa0181890:intron 40.0%
! TAAGGTTTAGGGTGCACATA+TGG - chr1_4:70177595-70177614 Msa0181890:intron 40.0%
GGAGAATGGTAGTAAGGTTT+AGG - chr1_4:70177607-70177626 Msa0181890:intron 40.0%
TATTTGTACGGCTTCTTTGG+TGG - chr1_4:70177634-70177653 Msa0181890:intron 40.0%
GGAGGAGAGGAATATTTGTA+CGG - chr1_4:70177646-70177665 Msa0181890:intron 40.0%
TTAGGGCTTACATAATGCAC+TGG - chr1_4:70177673-70177692 Msa0181890:intron 40.0%
GAGAGTGGTAGTAAGGTTTA+GGG - chr1_4:70177690-70177709 Msa0181890:intron 40.0%
AGGTGAATGGTAAACTGGAT+GGG - chr1_4:70177773-70177792 Msa0181890:CDS 40.0%
TACTTGTATGGCTTCTTTGG+GGG - chr1_4:70177799-70177818 Msa0181890:CDS 40.0%
GGAGGAGATGAATACTTGTA+TGG - chr1_4:70177811-70177830 Msa0181890:CDS 40.0%
!!! TAGACTGGTTTTGGAGTGTA+TGG - chr1_4:70178021-70178040 None:intergenic 40.0%
ATGTATGGAGAATGAACTGG+TGG - chr1_4:70178168-70178187 None:intergenic 40.0%
GGAATGTATGGAGAATGAAC+TGG - chr1_4:70178171-70178190 None:intergenic 40.0%
TAAACTGGGTGTGGAATGTA+TGG - chr1_4:70178183-70178202 None:intergenic 40.0%
!!! GTAAACTGGTTTTGGAGTGT+AGG - chr1_4:70178232-70178251 None:intergenic 40.0%
!! GGAGAGTGGTAAATTGGTTT+TGG - chr1_4:70178381-70178400 None:intergenic 40.0%
TAGATGTAACTGTGAACTGG+TGG - chr1_4:70178456-70178475 None:intergenic 40.0%
GCATAGATGTAACTGTGAAC+TGG - chr1_4:70178459-70178478 None:intergenic 40.0%
CCCACTATCTAGTGAGGTTA+AGG + chr1_4:70176962-70176981 Msa0181880:five_prime_UTR 45.0%
GCCTTAACCTCACTAGATAG+TGG - chr1_4:70176966-70176985 None:intergenic 45.0%
TAGAAGAGTCAAAGTGGCAG+AGG - chr1_4:70177023-70177042 Msa0181890:three_prime_UTR 45.0%
TAGTGGTAAGGTGGTGAAAC+TGG - chr1_4:70177166-70177185 Msa0181890:three_prime_UTR 45.0%
GGTGAAGAGTAATGGTAAGG+TGG - chr1_4:70177259-70177278 Msa0181890:three_prime_UTR 45.0%
GGTGGTGAAGAGTAATGGTA+AGG - chr1_4:70177262-70177281 Msa0181890:three_prime_UTR 45.0%
GGTGAAGAGTAATGGTAAGG+TGG - chr1_4:70177259-70177278 Msa0181890:three_prime_UTR 45.0%
GGTGGTGAAGAGTAATGGTA+AGG - chr1_4:70177262-70177281 Msa0181890:three_prime_UTR 45.0%
TGTGGAGGATATTTCTTGGG+TGG - chr1_4:70177370-70177389 Msa0181890:CDS 45.0%
GGTGAAGAGTAATGGTAAGG+TGG - chr1_4:70177259-70177278 Msa0181890:three_prime_UTR 45.0%
GGTGGTGAAGAGTAATGGTA+AGG - chr1_4:70177262-70177281 Msa0181890:three_prime_UTR 45.0%
TTCTTAGGTGGTGAGTACAC+TGG - chr1_4:70177457-70177476 Msa0181890:intron 45.0%
GGTGGTGAACTGTAATGGTA+GGG - chr1_4:70177529-70177548 Msa0181890:intron 45.0%
AGGTGGTGAACTGTAATGGT+AGG - chr1_4:70177530-70177549 Msa0181890:intron 45.0%
!! TAAGGTTTCTTTGGTGGTGG+AGG - chr1_4:70177550-70177569 Msa0181890:intron 45.0%
! CTTACATAATGCACTGGTGG+AGG - chr1_4:70177667-70177686 Msa0181890:intron 45.0%
GGAGAGTGGTAGTAAGGTTT+AGG - chr1_4:70177691-70177710 Msa0181890:intron 45.0%
GTGAATGGTAAACTGGATGG+GGG - chr1_4:70177771-70177790 Msa0181890:CDS 45.0%
GGTGAATGGTAAACTGGATG+GGG - chr1_4:70177772-70177791 Msa0181890:CDS 45.0%
GAGGTGAATGGTAAACTGGA+TGG - chr1_4:70177774-70177793 Msa0181890:CDS 45.0%
TGTGGATAAGGGTGATATGG+AGG - chr1_4:70177835-70177854 None:intergenic 45.0%
GGTGGAGATGGATACTTGTA+AGG - chr1_4:70177931-70177950 None:intergenic 45.0%
!!! CTGGTTTTGGAGTGTATGGA+GGG - chr1_4:70178017-70178036 None:intergenic 45.0%
!!! ACTGGTTTTGGAGTGTATGG+AGG - chr1_4:70178018-70178037 None:intergenic 45.0%
!!! TGTATTTTGGTGGTGGAGAG+TGG - chr1_4:70178044-70178063 None:intergenic 45.0%
TTGTATGGCTTCTTTGGTGG+TGG - chr1_4:70178129-70178148 None:intergenic 45.0%
GGAGGGGATGAGTATTTGTA+TGG - chr1_4:70178144-70178163 None:intergenic 45.0%
TATGGAGAATGAACTGGTGG+TGG - chr1_4:70178165-70178184 None:intergenic 45.0%
!!! CTGGTTTTGGAGTGTATGGA+GGG - chr1_4:70178017-70178036 None:intergenic 45.0%
!!! ACTGGTTTTGGAGTGTATGG+AGG - chr1_4:70178018-70178037 None:intergenic 45.0%
!! GGAGAGTGGTAAACTGGTTT+TGG - chr1_4:70178240-70178259 None:intergenic 45.0%
!! GGAGAGTGGTAAACTGGTTT+TGG - chr1_4:70178240-70178259 None:intergenic 45.0%
!!! CTGGTTTTGGAGTGTATGGA+GGG - chr1_4:70178017-70178036 None:intergenic 45.0%
!!! ACTGGTTTTGGAGTGTATGG+AGG - chr1_4:70178018-70178037 None:intergenic 45.0%
!! GGAGAGTGGTAAACTGGTTT+TGG - chr1_4:70178240-70178259 None:intergenic 45.0%
!!! TTGGTTTTGGAGTGTAGGGA+GGG - chr1_4:70178368-70178387 None:intergenic 45.0%
!!! ATTGGTTTTGGAGTGTAGGG+AGG - chr1_4:70178369-70178388 None:intergenic 45.0%
! TAAACTGGGTGAGGAGTGTA+GGG - chr1_4:70178420-70178439 None:intergenic 45.0%
! ATAAACTGGGTGAGGAGTGT+AGG - chr1_4:70178421-70178440 None:intergenic 45.0%
GTGGAGGAGAGTGATAAACT+GGG - chr1_4:70178434-70178453 None:intergenic 45.0%
ATGTAACTGTGAACTGGTGG+TGG - chr1_4:70178453-70178472 None:intergenic 45.0%
CCCACTATCTAGTGAGGTTA+AGG + chr1_4:70176962-70176981 Msa0181880:five_prime_UTR 45.0%
GCCTTAACCTCACTAGATAG+TGG - chr1_4:70176966-70176985 None:intergenic 45.0%
TAGAAGAGTCAAAGTGGCAG+AGG - chr1_4:70177023-70177042 Msa0181890:three_prime_UTR 45.0%
TAGTGGTAAGGTGGTGAAAC+TGG - chr1_4:70177166-70177185 Msa0181890:three_prime_UTR 45.0%
GGTGAAGAGTAATGGTAAGG+TGG - chr1_4:70177259-70177278 Msa0181890:three_prime_UTR 45.0%
GGTGGTGAAGAGTAATGGTA+AGG - chr1_4:70177262-70177281 Msa0181890:three_prime_UTR 45.0%
GGTGAAGAGTAATGGTAAGG+TGG - chr1_4:70177259-70177278 Msa0181890:three_prime_UTR 45.0%
GGTGGTGAAGAGTAATGGTA+AGG - chr1_4:70177262-70177281 Msa0181890:three_prime_UTR 45.0%
TGTGGAGGATATTTCTTGGG+TGG - chr1_4:70177370-70177389 Msa0181890:CDS 45.0%
GGTGAAGAGTAATGGTAAGG+TGG - chr1_4:70177259-70177278 Msa0181890:three_prime_UTR 45.0%
GGTGGTGAAGAGTAATGGTA+AGG - chr1_4:70177262-70177281 Msa0181890:three_prime_UTR 45.0%
TTCTTAGGTGGTGAGTACAC+TGG - chr1_4:70177457-70177476 Msa0181890:intron 45.0%
GGTGGTGAACTGTAATGGTA+GGG - chr1_4:70177529-70177548 Msa0181890:intron 45.0%
AGGTGGTGAACTGTAATGGT+AGG - chr1_4:70177530-70177549 Msa0181890:intron 45.0%
!! TAAGGTTTCTTTGGTGGTGG+AGG - chr1_4:70177550-70177569 Msa0181890:intron 45.0%
! CTTACATAATGCACTGGTGG+AGG - chr1_4:70177667-70177686 Msa0181890:intron 45.0%
GGAGAGTGGTAGTAAGGTTT+AGG - chr1_4:70177691-70177710 Msa0181890:intron 45.0%
GTGAATGGTAAACTGGATGG+GGG - chr1_4:70177771-70177790 Msa0181890:CDS 45.0%
GGTGAATGGTAAACTGGATG+GGG - chr1_4:70177772-70177791 Msa0181890:CDS 45.0%
GAGGTGAATGGTAAACTGGA+TGG - chr1_4:70177774-70177793 Msa0181890:CDS 45.0%
TGTGGATAAGGGTGATATGG+AGG - chr1_4:70177835-70177854 None:intergenic 45.0%
GGTGGAGATGGATACTTGTA+AGG - chr1_4:70177931-70177950 None:intergenic 45.0%
!!! CTGGTTTTGGAGTGTATGGA+GGG - chr1_4:70178017-70178036 None:intergenic 45.0%
!!! ACTGGTTTTGGAGTGTATGG+AGG - chr1_4:70178018-70178037 None:intergenic 45.0%
!!! TGTATTTTGGTGGTGGAGAG+TGG - chr1_4:70178044-70178063 None:intergenic 45.0%
TTGTATGGCTTCTTTGGTGG+TGG - chr1_4:70178129-70178148 None:intergenic 45.0%
GGAGGGGATGAGTATTTGTA+TGG - chr1_4:70178144-70178163 None:intergenic 45.0%
TATGGAGAATGAACTGGTGG+TGG - chr1_4:70178165-70178184 None:intergenic 45.0%
!!! CTGGTTTTGGAGTGTATGGA+GGG - chr1_4:70178017-70178036 None:intergenic 45.0%
!!! ACTGGTTTTGGAGTGTATGG+AGG - chr1_4:70178018-70178037 None:intergenic 45.0%
!! GGAGAGTGGTAAACTGGTTT+TGG - chr1_4:70178240-70178259 None:intergenic 45.0%
!! GGAGAGTGGTAAACTGGTTT+TGG - chr1_4:70178240-70178259 None:intergenic 45.0%
!!! CTGGTTTTGGAGTGTATGGA+GGG - chr1_4:70178017-70178036 None:intergenic 45.0%
!!! ACTGGTTTTGGAGTGTATGG+AGG - chr1_4:70178018-70178037 None:intergenic 45.0%
!! GGAGAGTGGTAAACTGGTTT+TGG - chr1_4:70178240-70178259 None:intergenic 45.0%
!!! TTGGTTTTGGAGTGTAGGGA+GGG - chr1_4:70178368-70178387 None:intergenic 45.0%
!!! ATTGGTTTTGGAGTGTAGGG+AGG - chr1_4:70178369-70178388 None:intergenic 45.0%
! TAAACTGGGTGAGGAGTGTA+GGG - chr1_4:70178420-70178439 None:intergenic 45.0%
! ATAAACTGGGTGAGGAGTGT+AGG - chr1_4:70178421-70178440 None:intergenic 45.0%
GTGGAGGAGAGTGATAAACT+GGG - chr1_4:70178434-70178453 None:intergenic 45.0%
ATGTAACTGTGAACTGGTGG+TGG - chr1_4:70178453-70178472 None:intergenic 45.0%
TTCACCTCCACCACCTTCTA+AGG + chr1_4:70177102-70177121 Msa0181880:CDS 50.0%
! TACACCTTAGAAGGTGGTGG+AGG - chr1_4:70177109-70177128 Msa0181890:three_prime_UTR 50.0%
! ACTGGAGGGTACACCTTAGA+AGG - chr1_4:70177118-70177137 Msa0181890:three_prime_UTR 50.0%
! GAAACTGGAGGGTACACCTT+TGG - chr1_4:70177151-70177170 Msa0181890:three_prime_UTR 50.0%
GGTAAGGTGGTGAAACTGGA+GGG - chr1_4:70177162-70177181 Msa0181890:three_prime_UTR 50.0%
TGGTAAGGTGGTGAAACTGG+AGG - chr1_4:70177163-70177182 Msa0181890:three_prime_UTR 50.0%
GGTGAAGAGTAGTGGTAAGG+TGG - chr1_4:70177175-70177194 Msa0181890:three_prime_UTR 50.0%
GGTGGTGAAGAGTAGTGGTA+AGG - chr1_4:70177178-70177197 Msa0181890:three_prime_UTR 50.0%
! GAATGTGGAGGGTACACCTT+AGG - chr1_4:70177205-70177224 Msa0181890:three_prime_UTR 50.0%
!! TTGGTGGTGGTGAATGTGGA+GGG - chr1_4:70177216-70177235 Msa0181890:three_prime_UTR 50.0%
!! TTTGGTGGTGGTGAATGTGG+AGG - chr1_4:70177217-70177236 Msa0181890:three_prime_UTR 50.0%
TCCACATTCACCACCACCAA+AGG + chr1_4:70177216-70177235 Msa0181880:intron 50.0%
!! ACCTTTGGTGGTGGTGAATG+TGG - chr1_4:70177220-70177239 Msa0181890:three_prime_UTR 50.0%
! GAAACTGGAGGGTACACCTT+TGG - chr1_4:70177151-70177170 Msa0181890:three_prime_UTR 50.0%
GGTAAGGTGGTGAAACTGGA+GGG - chr1_4:70177162-70177181 Msa0181890:three_prime_UTR 50.0%
TGGTAAGGTGGTGAAACTGG+AGG - chr1_4:70177163-70177182 Msa0181890:three_prime_UTR 50.0%
!! GTGGTGGTGGTGAAGAGTAA+TGG - chr1_4:70177267-70177286 Msa0181890:three_prime_UTR 50.0%
! GAATGTGGAGGGTACACCTT+AGG - chr1_4:70177205-70177224 Msa0181890:three_prime_UTR 50.0%
! GAAACTGGAGGGTACACCTT+GGG - chr1_4:70177151-70177170 Msa0181890:three_prime_UTR 50.0%
! TGAAACTGGAGGGTACACCT+TGG - chr1_4:70177152-70177171 Msa0181890:three_prime_UTR 50.0%
GGTAAGGTGGTGAAACTGGA+GGG - chr1_4:70177162-70177181 Msa0181890:three_prime_UTR 50.0%
TGGTAAGGTGGTGAAACTGG+AGG - chr1_4:70177163-70177182 Msa0181890:three_prime_UTR 50.0%
!! GTGGTGGTGGTGAAGAGTAA+TGG - chr1_4:70177267-70177286 Msa0181890:three_prime_UTR 50.0%
! GGATATTTCTTGGGTGGTGG+TGG - chr1_4:70177364-70177383 Msa0181890:CDS 50.0%
GGAGGATATTTCTTGGGTGG+TGG - chr1_4:70177367-70177386 Msa0181890:CDS 50.0%
! GAAACTGGAGGGTACACCTT+GGG - chr1_4:70177151-70177170 Msa0181890:three_prime_UTR 50.0%
! TGAAACTGGAGGGTACACCT+TGG - chr1_4:70177152-70177171 Msa0181890:three_prime_UTR 50.0%
GGTAAGGTGGTGAAACTGGA+GGG - chr1_4:70177162-70177181 Msa0181890:three_prime_UTR 50.0%
TGGTAAGGTGGTGAAACTGG+AGG - chr1_4:70177163-70177182 Msa0181890:three_prime_UTR 50.0%
!! GTGGTGGTGGTGAAGAGTAA+TGG - chr1_4:70177267-70177286 Msa0181890:three_prime_UTR 50.0%
TTAGGTGGTGAGTACACTGG+TGG - chr1_4:70177454-70177473 Msa0181890:intron 50.0%
GGTGGAGAGTGGTAGTAGTA+TGG - chr1_4:70177481-70177500 Msa0181890:intron 50.0%
GAACTGTAATGGTAGGGAGG+AGG - chr1_4:70177523-70177542 Msa0181890:intron 50.0%
GGTGAACTGTAATGGTAGGG+AGG - chr1_4:70177526-70177545 Msa0181890:intron 50.0%
GTGGAGGTGGTGAACTGTAA+TGG - chr1_4:70177534-70177553 Msa0181890:intron 50.0%
TTAGGGTGCACATATGGTGG+AGG - chr1_4:70177589-70177608 Msa0181890:intron 50.0%
! GGTTTAGGGTGCACATATGG+TGG - chr1_4:70177592-70177611 Msa0181890:intron 50.0%
!! GGTGGTGGAGAATGGTAGTA+AGG - chr1_4:70177613-70177632 Msa0181890:intron 50.0%
!! TCTTTGGTGGTGGTGGAGAA+TGG - chr1_4:70177621-70177640 Msa0181890:intron 50.0%
TTGTACGGCTTCTTTGGTGG+TGG - chr1_4:70177631-70177650 Msa0181890:intron 50.0%
! ACATAATGCACTGGTGGAGG+AGG - chr1_4:70177664-70177683 Msa0181890:intron 50.0%
GGGCTTACATAATGCACTGG+TGG - chr1_4:70177670-70177689 Msa0181890:intron 50.0%
!!! TGTGGGTAAGGTTTTGGGTG+GGG - chr1_4:70177748-70177767 Msa0181890:CDS 50.0%
!!! GTGTGGGTAAGGTTTTGGGT+GGG - chr1_4:70177749-70177768 Msa0181890:CDS 50.0%
GGAGGAGGTGAATGGTAAAC+TGG - chr1_4:70177778-70177797 Msa0181890:CDS 50.0%
! TTGTATGGCTTCTTTGGGGG+AGG - chr1_4:70177796-70177815 Msa0181890:CDS 50.0%
TAAGGGTGATATGGAGGTGG+AGG - chr1_4:70177829-70177848 None:intergenic 50.0%
GGATAAGGGTGATATGGAGG+TGG - chr1_4:70177832-70177851 None:intergenic 50.0%
GGGTGTGGATAAGGGTGATA+TGG - chr1_4:70177838-70177857 None:intergenic 50.0%
!!! GGTTTTTTAGGTGATGGGGG+AGG - chr1_4:70177910-70177929 None:intergenic 50.0%
TGGTGAGTGGTAAACTGGGT+GGG - chr1_4:70177983-70178002 None:intergenic 50.0%
! GTGGTGGTGAGTGGTAAACT+GGG - chr1_4:70177987-70178006 None:intergenic 50.0%
!!! GGAGAGTGGTAGACTGGTTT+TGG - chr1_4:70178030-70178049 None:intergenic 50.0%
GAGAGTGGTAGTAGGGCTTA+GGG - chr1_4:70178104-70178123 None:intergenic 50.0%
!! TATGGCTTCTTTGGTGGTGG+TGG - chr1_4:70178126-70178145 None:intergenic 50.0%
!! AGAATGAACTGGTGGTGGAG+GGG - chr1_4:70178160-70178179 None:intergenic 50.0%
!! GAGAATGAACTGGTGGTGGA+GGG - chr1_4:70178161-70178180 None:intergenic 50.0%
! GTGGTGGAGAGTGGTAAACT+GGG - chr1_4:70178197-70178216 None:intergenic 50.0%
!!! CTGGTTTTGGAGTGTAGGGA+GGG - chr1_4:70178275-70178294 None:intergenic 50.0%
!!! ACTGGTTTTGGAGTGTAGGG+AGG - chr1_4:70178276-70178295 None:intergenic 50.0%
ACTGGTGGAGAGTGGTAAAC+TGG - chr1_4:70178342-70178361 None:intergenic 50.0%
!! GGTGGTGGAGAGTGGTAAAT+TGG - chr1_4:70178387-70178406 None:intergenic 50.0%
GGAGAGTGATAAACTGGGTG+AGG - chr1_4:70178429-70178448 None:intergenic 50.0%
GGTGGAGGAGAGTGATAAAC+TGG - chr1_4:70178435-70178454 None:intergenic 50.0%
!! TAACTGTGAACTGGTGGTGG+AGG - chr1_4:70178450-70178469 None:intergenic 50.0%
TTCACCTCCACCACCTTCTA+AGG + chr1_4:70177102-70177121 Msa0181880:CDS 50.0%
! TACACCTTAGAAGGTGGTGG+AGG - chr1_4:70177109-70177128 Msa0181890:three_prime_UTR 50.0%
! ACTGGAGGGTACACCTTAGA+AGG - chr1_4:70177118-70177137 Msa0181890:three_prime_UTR 50.0%
! GAAACTGGAGGGTACACCTT+TGG - chr1_4:70177151-70177170 Msa0181890:three_prime_UTR 50.0%
GGTAAGGTGGTGAAACTGGA+GGG - chr1_4:70177162-70177181 Msa0181890:three_prime_UTR 50.0%
TGGTAAGGTGGTGAAACTGG+AGG - chr1_4:70177163-70177182 Msa0181890:three_prime_UTR 50.0%
GGTGAAGAGTAGTGGTAAGG+TGG - chr1_4:70177175-70177194 Msa0181890:three_prime_UTR 50.0%
GGTGGTGAAGAGTAGTGGTA+AGG - chr1_4:70177178-70177197 Msa0181890:three_prime_UTR 50.0%
! GAATGTGGAGGGTACACCTT+AGG - chr1_4:70177205-70177224 Msa0181890:three_prime_UTR 50.0%
!! TTGGTGGTGGTGAATGTGGA+GGG - chr1_4:70177216-70177235 Msa0181890:three_prime_UTR 50.0%
!! TTTGGTGGTGGTGAATGTGG+AGG - chr1_4:70177217-70177236 Msa0181890:three_prime_UTR 50.0%
TCCACATTCACCACCACCAA+AGG + chr1_4:70177216-70177235 Msa0181880:intron 50.0%
!! ACCTTTGGTGGTGGTGAATG+TGG - chr1_4:70177220-70177239 Msa0181890:three_prime_UTR 50.0%
! GAAACTGGAGGGTACACCTT+TGG - chr1_4:70177151-70177170 Msa0181890:three_prime_UTR 50.0%
GGTAAGGTGGTGAAACTGGA+GGG - chr1_4:70177162-70177181 Msa0181890:three_prime_UTR 50.0%
TGGTAAGGTGGTGAAACTGG+AGG - chr1_4:70177163-70177182 Msa0181890:three_prime_UTR 50.0%
!! GTGGTGGTGGTGAAGAGTAA+TGG - chr1_4:70177267-70177286 Msa0181890:three_prime_UTR 50.0%
! GAATGTGGAGGGTACACCTT+AGG - chr1_4:70177205-70177224 Msa0181890:three_prime_UTR 50.0%
! GAAACTGGAGGGTACACCTT+GGG - chr1_4:70177151-70177170 Msa0181890:three_prime_UTR 50.0%
! TGAAACTGGAGGGTACACCT+TGG - chr1_4:70177152-70177171 Msa0181890:three_prime_UTR 50.0%
GGTAAGGTGGTGAAACTGGA+GGG - chr1_4:70177162-70177181 Msa0181890:three_prime_UTR 50.0%
TGGTAAGGTGGTGAAACTGG+AGG - chr1_4:70177163-70177182 Msa0181890:three_prime_UTR 50.0%
!! GTGGTGGTGGTGAAGAGTAA+TGG - chr1_4:70177267-70177286 Msa0181890:three_prime_UTR 50.0%
! GGATATTTCTTGGGTGGTGG+TGG - chr1_4:70177364-70177383 Msa0181890:CDS 50.0%
GGAGGATATTTCTTGGGTGG+TGG - chr1_4:70177367-70177386 Msa0181890:CDS 50.0%
! GAAACTGGAGGGTACACCTT+GGG - chr1_4:70177151-70177170 Msa0181890:three_prime_UTR 50.0%
! TGAAACTGGAGGGTACACCT+TGG - chr1_4:70177152-70177171 Msa0181890:three_prime_UTR 50.0%
GGTAAGGTGGTGAAACTGGA+GGG - chr1_4:70177162-70177181 Msa0181890:three_prime_UTR 50.0%
TGGTAAGGTGGTGAAACTGG+AGG - chr1_4:70177163-70177182 Msa0181890:three_prime_UTR 50.0%
!! GTGGTGGTGGTGAAGAGTAA+TGG - chr1_4:70177267-70177286 Msa0181890:three_prime_UTR 50.0%
TTAGGTGGTGAGTACACTGG+TGG - chr1_4:70177454-70177473 Msa0181890:intron 50.0%
GGTGGAGAGTGGTAGTAGTA+TGG - chr1_4:70177481-70177500 Msa0181890:intron 50.0%
GAACTGTAATGGTAGGGAGG+AGG - chr1_4:70177523-70177542 Msa0181890:intron 50.0%
GGTGAACTGTAATGGTAGGG+AGG - chr1_4:70177526-70177545 Msa0181890:intron 50.0%
GTGGAGGTGGTGAACTGTAA+TGG - chr1_4:70177534-70177553 Msa0181890:intron 50.0%
TTAGGGTGCACATATGGTGG+AGG - chr1_4:70177589-70177608 Msa0181890:intron 50.0%
! GGTTTAGGGTGCACATATGG+TGG - chr1_4:70177592-70177611 Msa0181890:intron 50.0%
!! GGTGGTGGAGAATGGTAGTA+AGG - chr1_4:70177613-70177632 Msa0181890:intron 50.0%
!! TCTTTGGTGGTGGTGGAGAA+TGG - chr1_4:70177621-70177640 Msa0181890:intron 50.0%
TTGTACGGCTTCTTTGGTGG+TGG - chr1_4:70177631-70177650 Msa0181890:intron 50.0%
! ACATAATGCACTGGTGGAGG+AGG - chr1_4:70177664-70177683 Msa0181890:intron 50.0%
GGGCTTACATAATGCACTGG+TGG - chr1_4:70177670-70177689 Msa0181890:intron 50.0%
!!! TGTGGGTAAGGTTTTGGGTG+GGG - chr1_4:70177748-70177767 Msa0181890:CDS 50.0%
!!! GTGTGGGTAAGGTTTTGGGT+GGG - chr1_4:70177749-70177768 Msa0181890:CDS 50.0%
GGAGGAGGTGAATGGTAAAC+TGG - chr1_4:70177778-70177797 Msa0181890:CDS 50.0%
! TTGTATGGCTTCTTTGGGGG+AGG - chr1_4:70177796-70177815 Msa0181890:CDS 50.0%
TAAGGGTGATATGGAGGTGG+AGG - chr1_4:70177829-70177848 None:intergenic 50.0%
GGATAAGGGTGATATGGAGG+TGG - chr1_4:70177832-70177851 None:intergenic 50.0%
GGGTGTGGATAAGGGTGATA+TGG - chr1_4:70177838-70177857 None:intergenic 50.0%
!!! GGTTTTTTAGGTGATGGGGG+AGG - chr1_4:70177910-70177929 None:intergenic 50.0%
TGGTGAGTGGTAAACTGGGT+GGG - chr1_4:70177983-70178002 None:intergenic 50.0%
! GTGGTGGTGAGTGGTAAACT+GGG - chr1_4:70177987-70178006 None:intergenic 50.0%
!!! GGAGAGTGGTAGACTGGTTT+TGG - chr1_4:70178030-70178049 None:intergenic 50.0%
GAGAGTGGTAGTAGGGCTTA+GGG - chr1_4:70178104-70178123 None:intergenic 50.0%
!! TATGGCTTCTTTGGTGGTGG+TGG - chr1_4:70178126-70178145 None:intergenic 50.0%
!! AGAATGAACTGGTGGTGGAG+GGG - chr1_4:70178160-70178179 None:intergenic 50.0%
!! GAGAATGAACTGGTGGTGGA+GGG - chr1_4:70178161-70178180 None:intergenic 50.0%
! GTGGTGGAGAGTGGTAAACT+GGG - chr1_4:70178197-70178216 None:intergenic 50.0%
!!! CTGGTTTTGGAGTGTAGGGA+GGG - chr1_4:70178275-70178294 None:intergenic 50.0%
!!! ACTGGTTTTGGAGTGTAGGG+AGG - chr1_4:70178276-70178295 None:intergenic 50.0%
ACTGGTGGAGAGTGGTAAAC+TGG - chr1_4:70178342-70178361 None:intergenic 50.0%
!! GGTGGTGGAGAGTGGTAAAT+TGG - chr1_4:70178387-70178406 None:intergenic 50.0%
GGAGAGTGATAAACTGGGTG+AGG - chr1_4:70178429-70178448 None:intergenic 50.0%
GGTGGAGGAGAGTGATAAAC+TGG - chr1_4:70178435-70178454 None:intergenic 50.0%
!! TAACTGTGAACTGGTGGTGG+AGG - chr1_4:70178450-70178469 None:intergenic 50.0%
GGGTACACCTTAGAAGGTGG+TGG - chr1_4:70177112-70177131 Msa0181890:three_prime_UTR 55.0%
! GGAGGGTACACCTTAGAAGG+TGG - chr1_4:70177115-70177134 Msa0181890:three_prime_UTR 55.0%
!! TTGGTGGTGGTGAGACTGGA+GGG - chr1_4:70177132-70177151 Msa0181890:three_prime_UTR 55.0%
!! TTTGGTGGTGGTGAGACTGG+AGG - chr1_4:70177133-70177152 Msa0181890:three_prime_UTR 55.0%
TCCAGTCTCACCACCACCAA+AGG + chr1_4:70177132-70177151 Msa0181880:CDS 55.0%
!! ACCTTTGGTGGTGGTGAGAC+TGG - chr1_4:70177136-70177155 Msa0181890:three_prime_UTR 55.0%
! ACTGGAGGGTACACCTTTGG+TGG - chr1_4:70177148-70177167 Msa0181890:three_prime_UTR 55.0%
! GAGGTGGTGGTGAAGAGTAG+TGG - chr1_4:70177183-70177202 Msa0181890:three_prime_UTR 55.0%
CTCTTCACCACCACCTCCTA+AGG + chr1_4:70177186-70177205 Msa0181880:CDS 55.0%
! TGTGGAGGGTACACCTTAGG+AGG - chr1_4:70177202-70177221 Msa0181890:three_prime_UTR 55.0%
! ACTGGAGGGTACACCTTTGG+TGG - chr1_4:70177148-70177167 Msa0181890:three_prime_UTR 55.0%
CTCTTCACCACCACCACCTA+AGG + chr1_4:70177270-70177289 Msa0181880:CDS 55.0%
! TGTGGAGGGTACACCTTAGG+TGG - chr1_4:70177202-70177221 Msa0181890:three_prime_UTR 55.0%
! TGGGTGGTGGTGAATGTGGA+GGG - chr1_4:70177300-70177319 Msa0181890:CDS 55.0%
! TTGGGTGGTGGTGAATGTGG+AGG - chr1_4:70177301-70177320 Msa0181890:CDS 55.0%
TCCACATTCACCACCACCCA+AGG + chr1_4:70177300-70177319 Msa0181880:CDS 55.0%
! ACCTTGGGTGGTGGTGAATG+TGG - chr1_4:70177304-70177323 Msa0181890:CDS 55.0%
! TTGGGTGGTGGTGAATGTGG+AGG - chr1_4:70177301-70177320 Msa0181890:CDS 55.0%
TCCACATTCACCACCACCCA+AGG + chr1_4:70177300-70177319 Msa0181880:CDS 55.0%
! ACCTTGGGTGGTGGTGAATG+TGG - chr1_4:70177304-70177323 Msa0181890:CDS 55.0%
AGGAGGTGAGTAAACCGGTG+GGG - chr1_4:70177503-70177522 Msa0181890:intron 55.0%
GAGGAGGTGAGTAAACCGGT+GGG - chr1_4:70177504-70177523 Msa0181890:intron 55.0%
GGAGGAGGAGGTGAGTAAAC+CGG - chr1_4:70177508-70177527 Msa0181890:intron 55.0%
CTGTAATGGTAGGGAGGAGG+AGG - chr1_4:70177520-70177539 Msa0181890:intron 55.0%
!! GGTTTCTTTGGTGGTGGAGG+TGG - chr1_4:70177547-70177566 Msa0181890:intron 55.0%
!! TACGGCTTCTTTGGTGGTGG+TGG - chr1_4:70177628-70177647 Msa0181890:intron 55.0%
TGTGGGTAGTATGGAGGTGG+GGG - chr1_4:70177712-70177731 Msa0181890:CDS 55.0%
GTGTGGGTAGTATGGAGGTG+GGG - chr1_4:70177713-70177732 Msa0181890:CDS 55.0%
GGTGTGGGTAGTATGGAGGT+GGG - chr1_4:70177714-70177733 Msa0181890:CDS 55.0%
! TGAGGGTGTGGGTAGTATGG+AGG - chr1_4:70177718-70177737 Msa0181890:CDS 55.0%
! GGATGAGGGTGTGGGTAGTA+TGG - chr1_4:70177721-70177740 Msa0181890:CDS 55.0%
!!! TAAGGTTTTGGGTGGGGGTG+GGG - chr1_4:70177742-70177761 Msa0181890:CDS 55.0%
!!! GTAAGGTTTTGGGTGGGGGT+GGG - chr1_4:70177743-70177762 Msa0181890:CDS 55.0%
!!! GTGGGTAAGGTTTTGGGTGG+GGG - chr1_4:70177747-70177766 Msa0181890:CDS 55.0%
!!! GGTGTGGGTAAGGTTTTGGG+TGG - chr1_4:70177750-70177769 Msa0181890:CDS 55.0%
!! GGGGGTGTGGGTAAGGTTTT+GGG - chr1_4:70177753-70177772 Msa0181890:CDS 55.0%
!! TGGGGGTGTGGGTAAGGTTT+TGG - chr1_4:70177754-70177773 Msa0181890:CDS 55.0%
! GGTAAACTGGATGGGGGTGT+GGG - chr1_4:70177765-70177784 Msa0181890:CDS 55.0%
TGGTAAACTGGATGGGGGTG+TGG - chr1_4:70177766-70177785 Msa0181890:CDS 55.0%
! TCTTTGGGGGAGGAGGTGAA+TGG - chr1_4:70177786-70177805 Msa0181890:CDS 55.0%
! TATGGCTTCTTTGGGGGAGG+AGG - chr1_4:70177793-70177812 Msa0181890:CDS 55.0%
GTGAGTGGTGAACTGGGTAG+GGG - chr1_4:70177888-70177907 None:intergenic 55.0%
GGTGAGTGGTGAACTGGGTA+GGG - chr1_4:70177889-70177908 None:intergenic 55.0%
AGGTGAGTGGTGAACTGGGT+AGG - chr1_4:70177890-70177909 None:intergenic 55.0%
!! TAATGGTGGTGGGTTGGTGG+TGG - chr1_4:70177952-70177971 None:intergenic 55.0%
!! TGAGGGTAATGGTGGTGGGT+TGG - chr1_4:70177958-70177977 None:intergenic 55.0%
GTGAGTGGTAAACTGGGTGG+GGG - chr1_4:70177981-70178000 None:intergenic 55.0%
GGTGAGTGGTAAACTGGGTG+GGG - chr1_4:70177982-70178001 None:intergenic 55.0%
GTGGTGAGTGGTAAACTGGG+TGG - chr1_4:70177984-70178003 None:intergenic 55.0%
! GGTGGTGGTGAGTGGTAAAC+TGG - chr1_4:70177988-70178007 None:intergenic 55.0%
TATGGAGGGTGAACTGGTGG+TGG - chr1_4:70178003-70178022 None:intergenic 55.0%
GTGTATGGAGGGTGAACTGG+TGG - chr1_4:70178006-70178025 None:intergenic 55.0%
GGAGTGTATGGAGGGTGAAC+TGG - chr1_4:70178009-70178028 None:intergenic 55.0%
TTAGGGCTGACGTGATGCAC+TGG - chr1_4:70178087-70178106 None:intergenic 55.0%
GGAGAGTGGTAGTAGGGCTT+AGG - chr1_4:70178105-70178124 None:intergenic 55.0%
!! GGTGGTGGAGAGTGGTAGTA+GGG - chr1_4:70178111-70178130 None:intergenic 55.0%
!! TGGTGGTGGAGAGTGGTAGT+AGG - chr1_4:70178112-70178131 None:intergenic 55.0%
!! TCTTTGGTGGTGGTGGAGAG+TGG - chr1_4:70178119-70178138 None:intergenic 55.0%
!! GGAGAATGAACTGGTGGTGG+AGG - chr1_4:70178162-70178181 None:intergenic 55.0%
GGAGAGTGGTAAACTGGGTG+TGG - chr1_4:70178192-70178211 None:intergenic 55.0%
!! GGTGGTGGAGAGTGGTAAAC+TGG - chr1_4:70178198-70178217 None:intergenic 55.0%
TATGGAGGGTGAACTGGTGG+TGG - chr1_4:70178003-70178022 None:intergenic 55.0%
GTGTATGGAGGGTGAACTGG+TGG - chr1_4:70178006-70178025 None:intergenic 55.0%
GGAGTGTATGGAGGGTGAAC+TGG - chr1_4:70178009-70178028 None:intergenic 55.0%
!! GGTGGTGGAGAGTGGTAAAC+TGG - chr1_4:70178198-70178217 None:intergenic 55.0%
!! GGTGGTGGAGAGTGGTAAAC+TGG - chr1_4:70178198-70178217 None:intergenic 55.0%
TATGGAGGGTGAACTGGTGG+TGG - chr1_4:70178003-70178022 None:intergenic 55.0%
GTGTATGGAGGGTGAACTGG+TGG - chr1_4:70178006-70178025 None:intergenic 55.0%
GGAGTGTATGGAGGGTGAAC+TGG - chr1_4:70178009-70178028 None:intergenic 55.0%
!! GATGAACTGGTGGTGGAGAG+TGG - chr1_4:70178395-70178414 None:intergenic 55.0%
TAGGGAGGATGAACTGGTGG+TGG - chr1_4:70178402-70178421 None:intergenic 55.0%
GTGTAGGGAGGATGAACTGG+TGG - chr1_4:70178405-70178424 None:intergenic 55.0%
GGAGTGTAGGGAGGATGAAC+TGG - chr1_4:70178408-70178427 None:intergenic 55.0%
TAAGAGTGGTAAGGAGGGGG+AGG - chr1_4:70178486-70178505 None:intergenic 55.0%
GGGTACACCTTAGAAGGTGG+TGG - chr1_4:70177112-70177131 Msa0181890:three_prime_UTR 55.0%
! GGAGGGTACACCTTAGAAGG+TGG - chr1_4:70177115-70177134 Msa0181890:three_prime_UTR 55.0%
!! TTGGTGGTGGTGAGACTGGA+GGG - chr1_4:70177132-70177151 Msa0181890:three_prime_UTR 55.0%
!! TTTGGTGGTGGTGAGACTGG+AGG - chr1_4:70177133-70177152 Msa0181890:three_prime_UTR 55.0%
TCCAGTCTCACCACCACCAA+AGG + chr1_4:70177132-70177151 Msa0181880:CDS 55.0%
!! ACCTTTGGTGGTGGTGAGAC+TGG - chr1_4:70177136-70177155 Msa0181890:three_prime_UTR 55.0%
! ACTGGAGGGTACACCTTTGG+TGG - chr1_4:70177148-70177167 Msa0181890:three_prime_UTR 55.0%
! GAGGTGGTGGTGAAGAGTAG+TGG - chr1_4:70177183-70177202 Msa0181890:three_prime_UTR 55.0%
CTCTTCACCACCACCTCCTA+AGG + chr1_4:70177186-70177205 Msa0181880:CDS 55.0%
! TGTGGAGGGTACACCTTAGG+AGG - chr1_4:70177202-70177221 Msa0181890:three_prime_UTR 55.0%
! ACTGGAGGGTACACCTTTGG+TGG - chr1_4:70177148-70177167 Msa0181890:three_prime_UTR 55.0%
CTCTTCACCACCACCACCTA+AGG + chr1_4:70177270-70177289 Msa0181880:CDS 55.0%
! TGTGGAGGGTACACCTTAGG+TGG - chr1_4:70177202-70177221 Msa0181890:three_prime_UTR 55.0%
! TGGGTGGTGGTGAATGTGGA+GGG - chr1_4:70177300-70177319 Msa0181890:CDS 55.0%
! TTGGGTGGTGGTGAATGTGG+AGG - chr1_4:70177301-70177320 Msa0181890:CDS 55.0%
TCCACATTCACCACCACCCA+AGG + chr1_4:70177300-70177319 Msa0181880:CDS 55.0%
! ACCTTGGGTGGTGGTGAATG+TGG - chr1_4:70177304-70177323 Msa0181890:CDS 55.0%
! TTGGGTGGTGGTGAATGTGG+AGG - chr1_4:70177301-70177320 Msa0181890:CDS 55.0%
TCCACATTCACCACCACCCA+AGG + chr1_4:70177300-70177319 Msa0181880:CDS 55.0%
! ACCTTGGGTGGTGGTGAATG+TGG - chr1_4:70177304-70177323 Msa0181890:CDS 55.0%
AGGAGGTGAGTAAACCGGTG+GGG - chr1_4:70177503-70177522 Msa0181890:intron 55.0%
GAGGAGGTGAGTAAACCGGT+GGG - chr1_4:70177504-70177523 Msa0181890:intron 55.0%
GGAGGAGGAGGTGAGTAAAC+CGG - chr1_4:70177508-70177527 Msa0181890:intron 55.0%
CTGTAATGGTAGGGAGGAGG+AGG - chr1_4:70177520-70177539 Msa0181890:intron 55.0%
!! GGTTTCTTTGGTGGTGGAGG+TGG - chr1_4:70177547-70177566 Msa0181890:intron 55.0%
!! TACGGCTTCTTTGGTGGTGG+TGG - chr1_4:70177628-70177647 Msa0181890:intron 55.0%
TGTGGGTAGTATGGAGGTGG+GGG - chr1_4:70177712-70177731 Msa0181890:CDS 55.0%
GTGTGGGTAGTATGGAGGTG+GGG - chr1_4:70177713-70177732 Msa0181890:CDS 55.0%
GGTGTGGGTAGTATGGAGGT+GGG - chr1_4:70177714-70177733 Msa0181890:CDS 55.0%
! TGAGGGTGTGGGTAGTATGG+AGG - chr1_4:70177718-70177737 Msa0181890:CDS 55.0%
! GGATGAGGGTGTGGGTAGTA+TGG - chr1_4:70177721-70177740 Msa0181890:CDS 55.0%
!!! TAAGGTTTTGGGTGGGGGTG+GGG - chr1_4:70177742-70177761 Msa0181890:CDS 55.0%
!!! GTAAGGTTTTGGGTGGGGGT+GGG - chr1_4:70177743-70177762 Msa0181890:CDS 55.0%
!!! GTGGGTAAGGTTTTGGGTGG+GGG - chr1_4:70177747-70177766 Msa0181890:CDS 55.0%
!!! GGTGTGGGTAAGGTTTTGGG+TGG - chr1_4:70177750-70177769 Msa0181890:CDS 55.0%
!! GGGGGTGTGGGTAAGGTTTT+GGG - chr1_4:70177753-70177772 Msa0181890:CDS 55.0%
!! TGGGGGTGTGGGTAAGGTTT+TGG - chr1_4:70177754-70177773 Msa0181890:CDS 55.0%
! GGTAAACTGGATGGGGGTGT+GGG - chr1_4:70177765-70177784 Msa0181890:CDS 55.0%
TGGTAAACTGGATGGGGGTG+TGG - chr1_4:70177766-70177785 Msa0181890:CDS 55.0%
! TCTTTGGGGGAGGAGGTGAA+TGG - chr1_4:70177786-70177805 Msa0181890:CDS 55.0%
! TATGGCTTCTTTGGGGGAGG+AGG - chr1_4:70177793-70177812 Msa0181890:CDS 55.0%
GTGAGTGGTGAACTGGGTAG+GGG - chr1_4:70177888-70177907 None:intergenic 55.0%
GGTGAGTGGTGAACTGGGTA+GGG - chr1_4:70177889-70177908 None:intergenic 55.0%
AGGTGAGTGGTGAACTGGGT+AGG - chr1_4:70177890-70177909 None:intergenic 55.0%
!! TAATGGTGGTGGGTTGGTGG+TGG - chr1_4:70177952-70177971 None:intergenic 55.0%
!! TGAGGGTAATGGTGGTGGGT+TGG - chr1_4:70177958-70177977 None:intergenic 55.0%
GTGAGTGGTAAACTGGGTGG+GGG - chr1_4:70177981-70178000 None:intergenic 55.0%
GGTGAGTGGTAAACTGGGTG+GGG - chr1_4:70177982-70178001 None:intergenic 55.0%
GTGGTGAGTGGTAAACTGGG+TGG - chr1_4:70177984-70178003 None:intergenic 55.0%
! GGTGGTGGTGAGTGGTAAAC+TGG - chr1_4:70177988-70178007 None:intergenic 55.0%
TATGGAGGGTGAACTGGTGG+TGG - chr1_4:70178003-70178022 None:intergenic 55.0%
GTGTATGGAGGGTGAACTGG+TGG - chr1_4:70178006-70178025 None:intergenic 55.0%
GGAGTGTATGGAGGGTGAAC+TGG - chr1_4:70178009-70178028 None:intergenic 55.0%
TTAGGGCTGACGTGATGCAC+TGG - chr1_4:70178087-70178106 None:intergenic 55.0%
GGAGAGTGGTAGTAGGGCTT+AGG - chr1_4:70178105-70178124 None:intergenic 55.0%
!! GGTGGTGGAGAGTGGTAGTA+GGG - chr1_4:70178111-70178130 None:intergenic 55.0%
!! TGGTGGTGGAGAGTGGTAGT+AGG - chr1_4:70178112-70178131 None:intergenic 55.0%
!! TCTTTGGTGGTGGTGGAGAG+TGG - chr1_4:70178119-70178138 None:intergenic 55.0%
!! GGAGAATGAACTGGTGGTGG+AGG - chr1_4:70178162-70178181 None:intergenic 55.0%
GGAGAGTGGTAAACTGGGTG+TGG - chr1_4:70178192-70178211 None:intergenic 55.0%
!! GGTGGTGGAGAGTGGTAAAC+TGG - chr1_4:70178198-70178217 None:intergenic 55.0%
TATGGAGGGTGAACTGGTGG+TGG - chr1_4:70178003-70178022 None:intergenic 55.0%
GTGTATGGAGGGTGAACTGG+TGG - chr1_4:70178006-70178025 None:intergenic 55.0%
GGAGTGTATGGAGGGTGAAC+TGG - chr1_4:70178009-70178028 None:intergenic 55.0%
!! GGTGGTGGAGAGTGGTAAAC+TGG - chr1_4:70178198-70178217 None:intergenic 55.0%
!! GGTGGTGGAGAGTGGTAAAC+TGG - chr1_4:70178198-70178217 None:intergenic 55.0%
TATGGAGGGTGAACTGGTGG+TGG - chr1_4:70178003-70178022 None:intergenic 55.0%
GTGTATGGAGGGTGAACTGG+TGG - chr1_4:70178006-70178025 None:intergenic 55.0%
GGAGTGTATGGAGGGTGAAC+TGG - chr1_4:70178009-70178028 None:intergenic 55.0%
!! GATGAACTGGTGGTGGAGAG+TGG - chr1_4:70178395-70178414 None:intergenic 55.0%
TAGGGAGGATGAACTGGTGG+TGG - chr1_4:70178402-70178421 None:intergenic 55.0%
GTGTAGGGAGGATGAACTGG+TGG - chr1_4:70178405-70178424 None:intergenic 55.0%
GGAGTGTAGGGAGGATGAAC+TGG - chr1_4:70178408-70178427 None:intergenic 55.0%
TAAGAGTGGTAAGGAGGGGG+AGG - chr1_4:70178486-70178505 None:intergenic 55.0%
! GGAGGGTACACCTTTGGTGG+TGG - chr1_4:70177145-70177164 Msa0181890:three_prime_UTR 60.0%
GGGTACACCTTAGGAGGTGG+TGG - chr1_4:70177196-70177215 Msa0181890:three_prime_UTR 60.0%
! GGAGGGTACACCTTAGGAGG+TGG - chr1_4:70177199-70177218 Msa0181890:three_prime_UTR 60.0%
! GGAGGGTACACCTTTGGTGG+TGG - chr1_4:70177145-70177164 Msa0181890:three_prime_UTR 60.0%
! GGGTACACCTTAGGTGGTGG+TGG - chr1_4:70177280-70177299 Msa0181890:exon 60.0%
! GGAGGGTACACCTTAGGTGG+TGG - chr1_4:70177283-70177302 Msa0181890:exon 60.0%
! ACTGGAGGGTACACCTTGGG+TGG - chr1_4:70177316-70177335 Msa0181890:CDS 60.0%
! ACTGGAGGGTACACCTTGGG+TGG - chr1_4:70177316-70177335 Msa0181890:CDS 60.0%
!! GGTGAGTACACTGGTGGTGG+TGG - chr1_4:70177448-70177467 Msa0181890:CDS 60.0%
GGTGGTGAGTACACTGGTGG+TGG - chr1_4:70177451-70177470 Msa0181890:intron 60.0%
GGAGGTGAGTAAACCGGTGG+GGG - chr1_4:70177502-70177521 Msa0181890:intron 60.0%
GGAGGAGGTGAGTAAACCGG+TGG - chr1_4:70177505-70177524 Msa0181890:intron 60.0%
! GGGTGCACATATGGTGGAGG+AGG - chr1_4:70177586-70177605 Msa0181890:intron 60.0%
! ATGCACTGGTGGAGGAGGAG+AGG - chr1_4:70177659-70177678 Msa0181890:intron 60.0%
GGTGGGGGAGAGTGGTAGTA+AGG - chr1_4:70177697-70177716 Msa0181890:CDS 60.0%
AGTATGGAGGTGGGGGAGAG+TGG - chr1_4:70177705-70177724 Msa0181890:CDS 60.0%
GGGTGTGGGTAGTATGGAGG+TGG - chr1_4:70177715-70177734 Msa0181890:CDS 60.0%
!!! GGTAAGGTTTTGGGTGGGGG+TGG - chr1_4:70177744-70177763 Msa0181890:CDS 60.0%
! ACTGGATGGGGGTGTGGGTA+AGG - chr1_4:70177760-70177779 Msa0181890:CDS 60.0%
! GGGGGTGAGGGTGTGGATAA+GGG - chr1_4:70177846-70177865 None:intergenic 60.0%
! TGGGGGTGAGGGTGTGGATA+AGG - chr1_4:70177847-70177866 None:intergenic 60.0%
TGGTGAACTGGGTAGGGGTG+GGG - chr1_4:70177883-70177902 None:intergenic 60.0%
GTGGTGAACTGGGTAGGGGT+GGG - chr1_4:70177884-70177903 None:intergenic 60.0%
AGTGGTGAACTGGGTAGGGG+TGG - chr1_4:70177885-70177904 None:intergenic 60.0%
GGGGAGGTGAGTGGTGAACT+GGG - chr1_4:70177894-70177913 None:intergenic 60.0%
!! TAGGTGATGGGGGAGGTGAG+TGG - chr1_4:70177903-70177922 None:intergenic 60.0%
!! TGGGTTGGTGGTGGTGGAGA+TGG - chr1_4:70177943-70177962 None:intergenic 60.0%
!! GGGTAATGGTGGTGGGTTGG+TGG - chr1_4:70177955-70177974 None:intergenic 60.0%
! GGGGTGAGGGTAATGGTGGT+GGG - chr1_4:70177962-70177981 None:intergenic 60.0%
GGTAAACTGGGTGGGGGTGA+GGG - chr1_4:70177975-70177994 None:intergenic 60.0%
TGGTAAACTGGGTGGGGGTG+AGG - chr1_4:70177976-70177995 None:intergenic 60.0%
!! GGTGAACTGGTGGTGGTGAG+TGG - chr1_4:70177996-70178015 None:intergenic 60.0%
!! GGTGGTGGAGAGTGGTAGAC+TGG - chr1_4:70178036-70178055 None:intergenic 60.0%
!! ATGCACTGGTGGTGGTGGTG+AGG - chr1_4:70178073-70178092 None:intergenic 60.0%
!! ACGTGATGCACTGGTGGTGG+TGG - chr1_4:70178078-70178097 None:intergenic 60.0%
! CTGACGTGATGCACTGGTGG+TGG - chr1_4:70178081-70178100 None:intergenic 60.0%
!! GGTGAACTGGTGGTGGAGAG+TGG - chr1_4:70178206-70178225 None:intergenic 60.0%
!! GGTGAACTGGTGGTGGAGAG+TGG - chr1_4:70178206-70178225 None:intergenic 60.0%
TAGGGAGGGTGAACTGGTGG+TGG - chr1_4:70178261-70178280 None:intergenic 60.0%
GTGTAGGGAGGGTGAACTGG+TGG - chr1_4:70178264-70178283 None:intergenic 60.0%
GGAGTGTAGGGAGGGTGAAC+TGG - chr1_4:70178267-70178286 None:intergenic 60.0%
!! GGTGAACTGGTGGTGGAGAG+TGG - chr1_4:70178206-70178225 None:intergenic 60.0%
GAGGGTGAACTGGTGGAGAG+TGG - chr1_4:70178350-70178369 None:intergenic 60.0%
GTGTAGGGAGGGTGAACTGG+TGG - chr1_4:70178264-70178283 None:intergenic 60.0%
GGAGTGTAGGGAGGGTGAAC+TGG - chr1_4:70178267-70178286 None:intergenic 60.0%
! ACTGGGTGAGGAGTGTAGGG+AGG - chr1_4:70178417-70178436 None:intergenic 60.0%
! GGAGGGTACACCTTTGGTGG+TGG - chr1_4:70177145-70177164 Msa0181890:three_prime_UTR 60.0%
GGGTACACCTTAGGAGGTGG+TGG - chr1_4:70177196-70177215 Msa0181890:three_prime_UTR 60.0%
! GGAGGGTACACCTTAGGAGG+TGG - chr1_4:70177199-70177218 Msa0181890:three_prime_UTR 60.0%
! GGAGGGTACACCTTTGGTGG+TGG - chr1_4:70177145-70177164 Msa0181890:three_prime_UTR 60.0%
! GGGTACACCTTAGGTGGTGG+TGG - chr1_4:70177280-70177299 Msa0181890:exon 60.0%
! GGAGGGTACACCTTAGGTGG+TGG - chr1_4:70177283-70177302 Msa0181890:exon 60.0%
! ACTGGAGGGTACACCTTGGG+TGG - chr1_4:70177316-70177335 Msa0181890:CDS 60.0%
! ACTGGAGGGTACACCTTGGG+TGG - chr1_4:70177316-70177335 Msa0181890:CDS 60.0%
!! GGTGAGTACACTGGTGGTGG+TGG - chr1_4:70177448-70177467 Msa0181890:CDS 60.0%
GGTGGTGAGTACACTGGTGG+TGG - chr1_4:70177451-70177470 Msa0181890:intron 60.0%
GGAGGTGAGTAAACCGGTGG+GGG - chr1_4:70177502-70177521 Msa0181890:intron 60.0%
GGAGGAGGTGAGTAAACCGG+TGG - chr1_4:70177505-70177524 Msa0181890:intron 60.0%
! GGGTGCACATATGGTGGAGG+AGG - chr1_4:70177586-70177605 Msa0181890:intron 60.0%
! ATGCACTGGTGGAGGAGGAG+AGG - chr1_4:70177659-70177678 Msa0181890:intron 60.0%
GGTGGGGGAGAGTGGTAGTA+AGG - chr1_4:70177697-70177716 Msa0181890:CDS 60.0%
AGTATGGAGGTGGGGGAGAG+TGG - chr1_4:70177705-70177724 Msa0181890:CDS 60.0%
GGGTGTGGGTAGTATGGAGG+TGG - chr1_4:70177715-70177734 Msa0181890:CDS 60.0%
!!! GGTAAGGTTTTGGGTGGGGG+TGG - chr1_4:70177744-70177763 Msa0181890:CDS 60.0%
! ACTGGATGGGGGTGTGGGTA+AGG - chr1_4:70177760-70177779 Msa0181890:CDS 60.0%
! GGGGGTGAGGGTGTGGATAA+GGG - chr1_4:70177846-70177865 None:intergenic 60.0%
! TGGGGGTGAGGGTGTGGATA+AGG - chr1_4:70177847-70177866 None:intergenic 60.0%
TGGTGAACTGGGTAGGGGTG+GGG - chr1_4:70177883-70177902 None:intergenic 60.0%
GTGGTGAACTGGGTAGGGGT+GGG - chr1_4:70177884-70177903 None:intergenic 60.0%
AGTGGTGAACTGGGTAGGGG+TGG - chr1_4:70177885-70177904 None:intergenic 60.0%
GGGGAGGTGAGTGGTGAACT+GGG - chr1_4:70177894-70177913 None:intergenic 60.0%
!! TAGGTGATGGGGGAGGTGAG+TGG - chr1_4:70177903-70177922 None:intergenic 60.0%
!! TGGGTTGGTGGTGGTGGAGA+TGG - chr1_4:70177943-70177962 None:intergenic 60.0%
!! GGGTAATGGTGGTGGGTTGG+TGG - chr1_4:70177955-70177974 None:intergenic 60.0%
! GGGGTGAGGGTAATGGTGGT+GGG - chr1_4:70177962-70177981 None:intergenic 60.0%
GGTAAACTGGGTGGGGGTGA+GGG - chr1_4:70177975-70177994 None:intergenic 60.0%
TGGTAAACTGGGTGGGGGTG+AGG - chr1_4:70177976-70177995 None:intergenic 60.0%
!! GGTGAACTGGTGGTGGTGAG+TGG - chr1_4:70177996-70178015 None:intergenic 60.0%
!! GGTGGTGGAGAGTGGTAGAC+TGG - chr1_4:70178036-70178055 None:intergenic 60.0%
!! ATGCACTGGTGGTGGTGGTG+AGG - chr1_4:70178073-70178092 None:intergenic 60.0%
!! ACGTGATGCACTGGTGGTGG+TGG - chr1_4:70178078-70178097 None:intergenic 60.0%
! CTGACGTGATGCACTGGTGG+TGG - chr1_4:70178081-70178100 None:intergenic 60.0%
!! GGTGAACTGGTGGTGGAGAG+TGG - chr1_4:70178206-70178225 None:intergenic 60.0%
!! GGTGAACTGGTGGTGGAGAG+TGG - chr1_4:70178206-70178225 None:intergenic 60.0%
TAGGGAGGGTGAACTGGTGG+TGG - chr1_4:70178261-70178280 None:intergenic 60.0%
GTGTAGGGAGGGTGAACTGG+TGG - chr1_4:70178264-70178283 None:intergenic 60.0%
GGAGTGTAGGGAGGGTGAAC+TGG - chr1_4:70178267-70178286 None:intergenic 60.0%
!! GGTGAACTGGTGGTGGAGAG+TGG - chr1_4:70178206-70178225 None:intergenic 60.0%
GAGGGTGAACTGGTGGAGAG+TGG - chr1_4:70178350-70178369 None:intergenic 60.0%
GTGTAGGGAGGGTGAACTGG+TGG - chr1_4:70178264-70178283 None:intergenic 60.0%
GGAGTGTAGGGAGGGTGAAC+TGG - chr1_4:70178267-70178286 None:intergenic 60.0%
! ACTGGGTGAGGAGTGTAGGG+AGG - chr1_4:70178417-70178436 None:intergenic 60.0%
! GGAGGGTACACCTTGGGTGG+TGG - chr1_4:70177313-70177332 Msa0181890:CDS 65.0%
! GGAGGGTACACCTTGGGTGG+TGG - chr1_4:70177313-70177332 Msa0181890:CDS 65.0%
CTACCACTCTCCACCCCCAC+CGG + chr1_4:70177486-70177505 Msa0181880:CDS 65.0%
AAACCGGTGGGGGTGGAGAG+TGG - chr1_4:70177492-70177511 Msa0181890:intron 65.0%
GGTGAGTAAACCGGTGGGGG+TGG - chr1_4:70177499-70177518 Msa0181890:intron 65.0%
TTGGGTGGGGGTGGGGATGA+GGG - chr1_4:70177735-70177754 Msa0181890:CDS 65.0%
TTTGGGTGGGGGTGGGGATG+AGG - chr1_4:70177736-70177755 Msa0181890:CDS 65.0%
TGTGGATGGGGGTGAGGGTG+TGG - chr1_4:70177853-70177872 None:intergenic 65.0%
AACTGGGTAGGGGTGGGGGT+GGG - chr1_4:70177878-70177897 None:intergenic 65.0%
GGTGAACTGGGTAGGGGTGG+GGG - chr1_4:70177882-70177901 None:intergenic 65.0%
GGGGGAGGTGAGTGGTGAAC+TGG - chr1_4:70177895-70177914 None:intergenic 65.0%
!! TGGTGGTGGGTTGGTGGTGG+TGG - chr1_4:70177949-70177968 None:intergenic 65.0%
! GGGGGTGAGGGTAATGGTGG+TGG - chr1_4:70177963-70177982 None:intergenic 65.0%
! GGTGGGGGTGAGGGTAATGG+TGG - chr1_4:70177966-70177985 None:intergenic 65.0%
CTGGGTGGGGGTGAGGGTAA+TGG - chr1_4:70177969-70177988 None:intergenic 65.0%
GGGCTGACGTGATGCACTGG+TGG - chr1_4:70178084-70178103 None:intergenic 65.0%
! GGAGGGTACACCTTGGGTGG+TGG - chr1_4:70177313-70177332 Msa0181890:CDS 65.0%
! GGAGGGTACACCTTGGGTGG+TGG - chr1_4:70177313-70177332 Msa0181890:CDS 65.0%
CTACCACTCTCCACCCCCAC+CGG + chr1_4:70177486-70177505 Msa0181880:CDS 65.0%
AAACCGGTGGGGGTGGAGAG+TGG - chr1_4:70177492-70177511 Msa0181890:intron 65.0%
GGTGAGTAAACCGGTGGGGG+TGG - chr1_4:70177499-70177518 Msa0181890:intron 65.0%
TTGGGTGGGGGTGGGGATGA+GGG - chr1_4:70177735-70177754 Msa0181890:CDS 65.0%
TTTGGGTGGGGGTGGGGATG+AGG - chr1_4:70177736-70177755 Msa0181890:CDS 65.0%
TGTGGATGGGGGTGAGGGTG+TGG - chr1_4:70177853-70177872 None:intergenic 65.0%
AACTGGGTAGGGGTGGGGGT+GGG - chr1_4:70177878-70177897 None:intergenic 65.0%
GGTGAACTGGGTAGGGGTGG+GGG - chr1_4:70177882-70177901 None:intergenic 65.0%
GGGGGAGGTGAGTGGTGAAC+TGG - chr1_4:70177895-70177914 None:intergenic 65.0%
!! TGGTGGTGGGTTGGTGGTGG+TGG - chr1_4:70177949-70177968 None:intergenic 65.0%
! GGGGGTGAGGGTAATGGTGG+TGG - chr1_4:70177963-70177982 None:intergenic 65.0%
! GGTGGGGGTGAGGGTAATGG+TGG - chr1_4:70177966-70177985 None:intergenic 65.0%
CTGGGTGGGGGTGAGGGTAA+TGG - chr1_4:70177969-70177988 None:intergenic 65.0%
GGGCTGACGTGATGCACTGG+TGG - chr1_4:70178084-70178103 None:intergenic 65.0%
! GGGGGTGGGGATGAGGGTGT+GGG - chr1_4:70177729-70177748 Msa0181890:CDS 70.0%
TGGGGGTGGGGATGAGGGTG+TGG - chr1_4:70177730-70177749 Msa0181890:CDS 70.0%
! GGGGGTGTGGATGGGGGTGA+GGG - chr1_4:70177858-70177877 None:intergenic 70.0%
! TGGGGGTGTGGATGGGGGTG+AGG - chr1_4:70177859-70177878 None:intergenic 70.0%
! TGGGGGTGGGGGTGTGGATG+GGG - chr1_4:70177865-70177884 None:intergenic 70.0%
! GTGGGGGTGGGGGTGTGGAT+GGG - chr1_4:70177866-70177885 None:intergenic 70.0%
ACTGGGTAGGGGTGGGGGTG+GGG - chr1_4:70177877-70177896 None:intergenic 70.0%
GAACTGGGTAGGGGTGGGGG+TGG - chr1_4:70177879-70177898 None:intergenic 70.0%
! GGGGGTGGGGATGAGGGTGT+GGG - chr1_4:70177729-70177748 Msa0181890:CDS 70.0%
TGGGGGTGGGGATGAGGGTG+TGG - chr1_4:70177730-70177749 Msa0181890:CDS 70.0%
! GGGGGTGTGGATGGGGGTGA+GGG - chr1_4:70177858-70177877 None:intergenic 70.0%
! TGGGGGTGTGGATGGGGGTG+AGG - chr1_4:70177859-70177878 None:intergenic 70.0%
! TGGGGGTGGGGGTGTGGATG+GGG - chr1_4:70177865-70177884 None:intergenic 70.0%
! GTGGGGGTGGGGGTGTGGAT+GGG - chr1_4:70177866-70177885 None:intergenic 70.0%
ACTGGGTAGGGGTGGGGGTG+GGG - chr1_4:70177877-70177896 None:intergenic 70.0%
GAACTGGGTAGGGGTGGGGG+TGG - chr1_4:70177879-70177898 None:intergenic 70.0%
! GGGGGTGGGGGTGTGGATGG+GGG - chr1_4:70177864-70177883 None:intergenic 75.0%
! GGTGGGGGTGGGGGTGTGGA+TGG - chr1_4:70177867-70177886 None:intergenic 75.0%
TAGGGGTGGGGGTGGGGGTG+TGG - chr1_4:70177871-70177890 None:intergenic 75.0%
CTGGGTAGGGGTGGGGGTGG+GGG - chr1_4:70177876-70177895 None:intergenic 75.0%
! GGGGGTGGGGGTGTGGATGG+GGG - chr1_4:70177864-70177883 None:intergenic 75.0%
! GGTGGGGGTGGGGGTGTGGA+TGG - chr1_4:70177867-70177886 None:intergenic 75.0%
TAGGGGTGGGGGTGGGGGTG+TGG - chr1_4:70177871-70177890 None:intergenic 75.0%
CTGGGTAGGGGTGGGGGTGG+GGG - chr1_4:70177876-70177895 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 70176870 70178506 70176870 ID=Msa0181880;Name=Msa0181880
chr1_4 mRNA 70176870 70178506 70176870 ID=Msa0181880-mRNA-1;Parent=Msa0181880;Name=Msa0181880-mRNA-1;_AED=0.12;_eAED=0.15;_QI=134|1|0.5|1|0|0|2|0|490
chr1_4 exon 70176870 70177207 70176870 ID=Msa0181880-mRNA-1:exon:23424;Parent=Msa0181880-mRNA-1
chr1_4 exon 70177238 70178506 70177238 ID=Msa0181880-mRNA-1:exon:23425;Parent=Msa0181880-mRNA-1
chr1_4 five_prime_UTR 70176870 70177003 70176870 ID=Msa0181880-mRNA-1:five_prime_utr;Parent=Msa0181880-mRNA-1
chr1_4 CDS 70177004 70177207 70177004 ID=Msa0181880-mRNA-1:cds;Parent=Msa0181880-mRNA-1
chr1_4 CDS 70177238 70178506 70177238 ID=Msa0181880-mRNA-1:cds;Parent=Msa0181880-mRNA-1
Gene Sequence

>Msa0181880

ATGAGGTCTTCAATGGCCTCTGCCACTTTGACTCTTCTATTAGCTATAGTGTCTCTCTCCATACCATCTCAAATTTCAGCAAACAGCTATTTGTATTCTTCACCTCCACCACCTTCTAAGGTGTACCCTCCAGTCTCACCACCACCAAAGGTGTACCCTCCAGTTTCACCACCTTACCACTACTCTTCACCACCACCTCCTAAGGTGTACCCTCCAGTTTCACCACCTTACCATTACTCTTCACCACCACCACCTAAGGTGTACCCTCCACATTCACCACCACCCAAGGTGTACCCTCCAGTTTCACCACCTTACCATTACTCTTCACCACCACCACCCAAGAAATATCCTCCACATTCACCACCACCCAAGGTGTACCCTCCAGTTTCACCACCTTACCATTACTCTTCACCACCACCACCAGTGTACTCACCACCTAAGAAACCATACTACTACCACTCTCCACCCCCACCGGTTTACTCACCTCCTCCTCCCTACCATTACAGTTCACCACCTCCACCACCAAAGAAACCTTACAAGTATTCTTCTCCTCCTCCACCATATGTGCACCCTAAACCTTACTACCATTCTCCACCACCACCAAAGAAGCCGTACAAATATTCCTCTCCTCCTCCACCAGTGCATTATGTAAGCCCTAAACCTTACTACCACTCTCCCCCACCTCCATACTACCCACACCCTCATCCCCACCCCCACCCAAAACCTTACCCACACCCCCATCCAGTTTACCATTCACCTCCTCCCCCAAAGAAGCCATACAAGTATTCATCTCCTCCACCTCCATATCACCCTTATCCACACCCTCACCCCCATCCACACCCCCACCCCCACCCCTACCCAGTTCACCACTCACCTCCCCCATCACCTAAAAAACCTTACAAGTATCCATCTCCACCACCACCAACCCACCACCATTACCCTCACCCCCACCCAGTTTACCACTCACCACCACCAGTTCACCCTCCATACACTCCAAAACCAGTCTACCACTCTCCACCACCAAAATACAAGTATTCCTCACCACCACCACCAGTGCATCACGTCAGCCCTAAGCCCTACTACCACTCTCCACCACCACCAAAGAAGCCATACAAATACTCATCCCCTCCACCACCAGTTCATTCTCCATACATTCCACACCCAGTTTACCACTCTCCACCACCAGTTCACCCTCCATACACTCCAAAACCAGTTTACCACTCTCCACCACCAGTTCACCCTCCCTACACTCCAAAACCAGTTTACCACTCTCCACCACCAGTTCACCCTCCATACACTCCAAAACCAGTTTACCACTCTCCACCAGTTCACCCTCCCTACACTCCAAAACCAATTTACCACTCTCCACCACCAGTTCATCCTCCCTACACTCCTCACCCAGTTTATCACTCTCCTCCACCACCAGTTCACAGTTACATCTATGCATCACCTCCCCCTCCTTACCACTCTTAG
Protein sequence

>Msa0181880

MRSSMASATLTLLLAIVSLSIPSQISANSYLYSSPPPPSKVYPPVSPPPKVYPPVSPPYHYSSPPPPKVYPPVSPPYHYSSPPPPKVYPPHSPPPKVYPPVSPPYHYSSPPPPKKYPPHSPPPKVYPPVSPPYHYSSPPPPVYSPPKKPYYYHSPPPPVYSPPPPYHYSSPPPPPKKPYKYSSPPPPYVHPKPYYHSPPPPKKPYKYSSPPPPVHYVSPKPYYHSPPPPYYPHPHPHPHPKPYPHPHPVYHSPPPPKKPYKYSSPPPPYHPYPHPHPHPHPHPHPYPVHHSPPPSPKKPYKYPSPPPPTHHHYPHPHPVYHSPPPVHPPYTPKPVYHSPPPKYKYSSPPPPVHHVSPKPYYHSPPPPKKPYKYSSPPPPVHSPYIPHPVYHSPPPVHPPYTPKPVYHSPPPVHPPYTPKPVYHSPPPVHPPYTPKPVYHSPPVHPPYTPKPIYHSPPPVHPPYTPHPVYHSPPPPVHSYIYASPPPPYHS*