AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0479320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479320 MtrunA17_Chr3g0142131 98.731 394 4 1 1 393 1 394 0.0 778
Msa0479320 MtrunA17_Chr1g0155761 82.090 402 61 5 1 393 1 400 0.0 648
Msa0479320 MtrunA17_Chr6g0483401 59.659 352 128 5 29 376 19 360 1.05e-142 410
Msa0479320 MtrunA17_Chr5g0408001 41.033 368 204 5 17 376 7 369 1.02e-87 270
Msa0479320 MtrunA17_Chr5g0407991 39.678 373 210 5 9 376 5 367 2.08e-87 270
Msa0479320 MtrunA17_Chr5g0408031 39.516 372 206 5 17 376 7 371 9.30e-84 260
Msa0479320 MtrunA17_Chr5g0407971 41.056 341 193 4 17 352 8 345 1.25e-83 260
Msa0479320 MtrunA17_Chr5g0408041 40.000 360 210 3 22 376 13 371 2.91e-82 256
Msa0479320 MtrunA17_Chr8g0354121 40.476 336 191 3 17 351 10 337 4.56e-82 256
Msa0479320 MtrunA17_Chr1g0186601 40.356 337 186 4 17 352 13 335 8.12e-82 254
Msa0479320 MtrunA17_Chr7g0255561 39.306 346 200 2 8 352 2 338 9.75e-82 255
Msa0479320 MtrunA17_Chr7g0255581 39.306 346 200 2 8 352 2 338 9.75e-82 255
Msa0479320 MtrunA17_Chr1g0186611 39.169 337 190 3 17 352 13 335 1.75e-81 253
Msa0479320 MtrunA17_Chr1g0186641 40.179 336 186 3 17 351 10 331 2.80e-81 253
Msa0479320 MtrunA17_Chr5g0404811 50.566 265 112 4 128 390 1 248 4.74e-81 249
Msa0479320 MtrunA17_Chr1g0171301 38.576 337 194 3 17 352 13 337 5.66e-81 252
Msa0479320 MtrunA17_Chr3g0114691 37.500 336 200 3 17 352 17 342 1.50e-79 249
Msa0479320 MtrunA17_Chr1g0160171 37.912 364 206 3 17 372 13 364 5.79e-79 248
Msa0479320 MtrunA17_Chr8g0369841 36.815 383 221 7 6 383 2 368 1.29e-78 247
Msa0479320 MtrunA17_Chr1g0186561 40.950 337 185 4 17 352 13 336 1.79e-78 246
Msa0479320 MtrunA17_Chr1g0160181 40.426 329 185 3 25 352 23 341 2.84e-78 246
Msa0479320 MtrunA17_Chr3g0081421 40.294 340 193 4 13 350 9 340 3.18e-77 244
Msa0479320 MtrunA17_Chr3g0081511 38.352 352 197 3 5 351 2 338 1.62e-76 242
Msa0479320 MtrunA17_Chr1g0186571 38.253 332 190 4 22 352 15 332 2.03e-75 238
Msa0479320 MtrunA17_Chr8g0334761 37.741 363 203 4 11 365 1 348 6.70e-75 237
Msa0479320 MtrunA17_Chr3g0114731 38.957 326 185 2 25 350 23 334 1.45e-73 234
Msa0479320 MtrunA17_Chr2g0310441 37.127 369 213 4 25 387 15 370 1.33e-72 231
Msa0479320 MtrunA17_Chr7g0263101 37.190 363 210 4 24 380 17 367 1.46e-72 231
Msa0479320 MtrunA17_Chr1g0182291 35.695 367 216 4 17 379 12 362 2.56e-72 230
Msa0479320 MtrunA17_Chr6g0463971 36.735 343 207 3 14 356 10 342 2.05e-71 228
Msa0479320 MtrunA17_Chr2g0284261 35.905 337 200 2 17 352 5 326 2.56e-71 228
Msa0479320 MtrunA17_Chr3g0114711 36.813 364 176 5 26 350 20 368 3.41e-71 228
Msa0479320 MtrunA17_Chr1g0164831 36.047 344 203 4 25 368 8 334 1.07e-69 223
Msa0479320 MtrunA17_Chr1g0184221 32.418 364 212 5 17 366 13 356 6.53e-69 222
Msa0479320 MtrunA17_Chr8g0334771 37.789 389 216 6 11 388 1 374 3.02e-68 220
Msa0479320 MtrunA17_Chr4g0059311 34.743 331 203 3 23 352 14 332 4.30e-68 219
Msa0479320 MtrunA17_Chr7g0271561 35.152 330 201 3 25 350 12 332 1.79e-67 218
Msa0479320 MtrunA17_Chr2g0278561 36.232 345 211 2 13 357 8 343 1.35e-64 211
Msa0479320 MtrunA17_Chr3g0126101 35.913 323 191 3 37 359 23 329 2.33e-64 209
Msa0479320 MtrunA17_Chr3g0114701 35.942 345 209 4 25 368 14 347 2.54e-64 210
Msa0479320 MtrunA17_Chr2g0290611 36.111 360 211 4 25 376 17 365 5.61e-64 209
Msa0479320 MtrunA17_Chr3g0129591 33.898 354 224 2 22 373 7 352 1.23e-63 207
Msa0479320 MtrunA17_Chr3g0129601 35.347 331 203 4 22 351 31 351 6.46e-63 206
Msa0479320 MtrunA17_Chr5g0413961 36.982 338 194 4 33 370 27 345 1.45e-62 204
Msa0479320 MtrunA17_Chr8g0334751 37.027 370 202 6 25 390 16 358 3.47e-61 201
Msa0479320 MtrunA17_Chr3g0129571 33.233 331 211 2 22 350 9 331 8.41e-61 200
Msa0479320 MtrunA17_Chr8g0383731 33.828 337 213 2 17 351 2 330 1.07e-60 199
Msa0479320 MtrunA17_Chr1g0160111 31.858 339 222 2 29 364 16 348 2.59e-60 199
Msa0479320 MtrunA17_Chr2g0278541 35.897 351 209 3 25 369 17 357 2.68e-60 200
Msa0479320 MtrunA17_Chr4g0073241 34.133 375 216 7 25 393 13 362 3.10e-59 196
Msa0479320 MtrunA17_Chr2g0278551 35.043 351 215 5 25 374 17 355 7.23e-59 196
Msa0479320 MtrunA17_Chr5g0413941 32.370 346 214 4 15 356 2 331 1.44e-55 186
Msa0479320 MtrunA17_Chr2g0332001 33.435 329 205 2 25 352 43 358 4.63e-55 186
Msa0479320 MtrunA17_Chr3g0129581 32.768 354 228 3 22 373 7 352 3.08e-54 183
Msa0479320 MtrunA17_Chr4g0050891 32.258 341 214 2 10 345 3 331 6.02e-54 182
Msa0479320 MtrunA17_Chr4g0050941 33.512 373 236 4 25 393 17 381 1.93e-53 182
Msa0479320 MtrunA17_Chr5g0413921 31.378 341 220 4 17 356 4 331 1.07e-52 179
Msa0479320 MtrunA17_Chr1g0177221 37.255 255 146 2 25 278 23 264 1.06e-51 174
Msa0479320 MtrunA17_Chr5g0404801 71.429 119 34 0 15 133 2 120 1.42e-51 168
Msa0479320 MtrunA17_Chr4g0051021 30.707 368 244 4 25 392 19 375 2.76e-51 176
Msa0479320 MtrunA17_Chr5g0428881 29.650 371 240 4 14 374 9 368 4.26e-50 173
Msa0479320 MtrunA17_Chr5g0413951 30.514 331 210 4 25 351 12 326 1.18e-49 171
Msa0479320 MtrunA17_Chr5g0413931 32.153 339 208 6 23 356 9 330 3.11e-47 164
Msa0479320 MtrunA17_Chr4g0050881 32.011 353 214 7 25 368 14 349 1.06e-46 163
Msa0479320 MtrunA17_Chr4g0050931 31.832 333 173 3 25 352 17 300 1.33e-45 159
Msa0479320 MtrunA17_Chr1g0150151 32.326 331 211 5 23 351 14 333 3.04e-45 159
Msa0479320 MtrunA17_Chr4g0056081 30.423 355 216 7 9 351 3 338 2.64e-42 151
Msa0479320 MtrunA17_Chr5g0441761 28.440 327 217 1 24 350 18 327 3.62e-42 151
Msa0479320 MtrunA17_Chr7g0227921 30.518 367 222 7 24 388 15 350 1.02e-40 147
Msa0479320 MtrunA17_Chr5g0399281 32.551 341 206 9 17 350 5 328 1.98e-40 146
Msa0479320 MtrunA17_Chr1g0211801 32.677 254 158 3 25 278 16 256 2.16e-40 144
Msa0479320 MtrunA17_Chr5g0429001 31.731 312 201 4 78 384 7 311 3.49e-40 145
Msa0479320 MtrunA17_Chr4g0051001 30.921 304 201 3 25 328 36 330 8.48e-39 141
Msa0479320 MtrunA17_Chr3g0084091 33.594 256 159 2 95 350 5 249 1.61e-38 140
Msa0479320 MtrunA17_Chr6g0451211 28.779 344 219 9 40 376 32 356 1.78e-38 141
Msa0479320 MtrunA17_Chr3g0126091 27.492 331 218 6 34 356 25 341 2.38e-34 130
Msa0479320 MtrunA17_Chr6g0451201 30.769 312 199 4 40 351 32 326 3.07e-33 127
Msa0479320 MtrunA17_Chr2g0278021 34.043 235 144 2 134 365 1 227 1.19e-32 124
Msa0479320 MtrunA17_Chr6g0451261 28.000 300 200 5 34 331 25 310 3.34e-32 129
Msa0479320 MtrunA17_Chr6g0451251 30.117 342 220 6 40 379 32 356 4.30e-32 124
Msa0479320 MtrunA17_Chr6g0451171 26.901 342 229 6 29 368 21 343 4.45e-30 119
Msa0479320 MtrunA17_Chr8g0334721 37.671 146 84 1 243 388 2 140 3.36e-28 108
Msa0479320 MtrunA17_Chr8g0334711 36.139 202 115 5 25 225 15 203 8.68e-27 106
Msa0479320 MtrunA17_Chr6g0451191 25.957 235 157 3 134 368 1 218 1.20e-21 92.8
Msa0479320 MtrunA17_Chr8g0334731 29.630 216 119 6 12 225 3 187 9.54e-18 80.9
Msa0479320 MtrunA17_Chr1g0182261 34.815 135 84 4 221 352 79 212 8.57e-17 79.0
Msa0479320 MtrunA17_Chr4g0050921 37.255 102 64 0 230 331 3 104 2.13e-16 75.5
Msa0479320 MtrunA17_Chr2g0278031 40.741 108 64 0 25 132 19 126 7.37e-16 73.6
Msa0479320 MtrunA17_Chr1g0211811 43.662 71 40 0 280 350 1 71 1.11e-15 72.0
Msa0479320 MtrunA17_Chr1g0177231 38.202 89 54 1 264 352 15 102 2.71e-15 72.0
Msa0479320 MtrunA17_Chr1g0172881 29.252 147 83 3 133 278 23 149 4.34e-15 72.4
Msa0479320 MtrunA17_Chr4g0050911 35.200 125 78 1 105 229 16 137 5.94e-14 69.3
Msa0479320 MtrunA17_Chr1g0172891 41.176 68 40 0 285 352 13 80 7.58e-14 67.8
Msa0479320 MtrunA17_Chr8g0334741 28.387 155 78 5 243 390 2 130 4.84e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479320 AT1G75500.1 74.747 396 90 5 1 393 1 389 0.0 587
Msa0479320 AT1G75500.2 74.747 396 90 5 1 393 1 389 0.0 587
Msa0479320 AT3G53210.1 55.968 377 152 4 15 388 4 369 2.09e-146 420
Msa0479320 AT3G18200.2 57.104 366 141 3 15 380 29 378 1.84e-145 418
Msa0479320 AT3G53210.3 60.606 264 93 2 15 278 4 256 3.68e-110 324
Msa0479320 AT3G53210.2 52.862 297 126 4 95 388 27 312 2.17e-104 311
Msa0479320 AT3G18200.1 53.788 264 106 3 117 380 1 248 2.63e-93 280
Msa0479320 AT4G30420.2 39.481 385 212 6 17 393 5 376 1.72e-81 254
Msa0479320 AT4G30420.1 39.947 378 206 6 24 393 2 366 3.49e-81 254
Msa0479320 AT5G07050.1 38.162 359 215 3 24 380 21 374 1.60e-79 250
Msa0479320 AT4G08300.1 37.838 333 198 2 24 356 14 337 3.16e-77 243
Msa0479320 AT4G08290.1 36.000 375 220 3 17 381 9 373 2.47e-76 241
Msa0479320 AT1G44800.1 34.530 362 223 3 17 376 7 356 3.51e-76 241
Msa0479320 AT5G45370.2 37.234 376 213 6 17 386 16 374 1.62e-75 239
Msa0479320 AT5G45370.4 37.234 376 213 6 17 386 16 374 1.62e-75 239
Msa0479320 AT5G45370.1 37.466 371 195 6 17 386 16 350 2.09e-75 238
Msa0479320 AT1G21890.1 37.313 335 207 1 22 356 12 343 1.65e-74 237
Msa0479320 AT2G39510.1 36.579 380 213 8 25 393 12 374 6.15e-74 235
Msa0479320 AT3G45870.1 40.909 330 191 4 17 345 8 334 1.68e-72 231
Msa0479320 AT2G40900.1 36.620 355 203 3 11 360 1 338 3.17e-71 229
Msa0479320 AT4G19185.1 37.433 374 216 5 22 392 22 380 2.21e-70 226
Msa0479320 AT1G09380.1 38.769 325 191 2 24 348 11 327 2.71e-70 226
Msa0479320 AT5G13670.1 35.417 336 206 3 17 351 4 329 8.69e-68 219
Msa0479320 AT2G37460.1 37.391 345 195 6 17 357 11 338 3.71e-67 218
Msa0479320 AT3G45870.8 40.256 313 183 4 17 328 8 317 5.51e-67 216
Msa0479320 AT4G01440.1 38.217 314 180 2 40 352 29 329 3.96e-66 214
Msa0479320 AT3G30340.1 33.636 330 202 2 25 351 15 330 1.84e-65 213
Msa0479320 AT1G11450.3 36.522 345 200 3 25 368 20 346 3.10e-65 212
Msa0479320 AT1G01070.1 34.795 365 220 4 15 372 10 363 1.11e-64 211
Msa0479320 AT4G01430.1 35.549 346 209 5 40 381 28 363 1.13e-63 208
Msa0479320 AT1G21890.2 36.482 307 192 1 22 328 12 315 1.26e-62 205
Msa0479320 AT3G56620.1 34.911 338 204 2 11 348 1 322 1.96e-62 205
Msa0479320 AT1G43650.1 34.524 336 201 3 22 355 8 326 3.29e-62 204
Msa0479320 AT1G11450.5 37.500 320 181 3 50 368 1 302 1.06e-61 201
Msa0479320 AT4G01440.3 38.276 290 165 2 40 328 29 305 1.50e-60 199
Msa0479320 AT1G11450.2 37.942 311 174 3 59 368 3 295 3.17e-60 197
Msa0479320 AT1G11460.1 34.954 329 201 3 25 352 20 336 3.00e-58 193
Msa0479320 AT5G64700.1 34.154 325 209 2 28 352 15 334 1.25e-56 189
Msa0479320 AT4G28040.1 30.833 360 220 6 17 373 4 337 2.11e-55 186
Msa0479320 AT4G28040.5 30.833 360 220 6 17 373 4 337 2.11e-55 186
Msa0479320 AT4G28040.3 30.833 360 220 6 17 373 4 337 2.11e-55 186
Msa0479320 AT4G28040.4 30.833 360 220 6 17 373 4 337 2.11e-55 186
Msa0479320 AT4G28040.2 30.833 360 220 6 17 373 4 337 2.11e-55 186
Msa0479320 AT3G45870.9 41.065 263 151 4 17 278 8 267 3.90e-55 183
Msa0479320 AT1G11450.4 35.738 305 182 2 25 328 20 311 1.60e-54 183
Msa0479320 AT1G01070.2 35.463 313 184 4 67 372 15 316 4.80e-54 182
Msa0479320 AT4G19185.2 35.762 302 176 5 94 392 16 302 1.78e-53 180
Msa0479320 AT4G01430.2 36.082 291 174 3 40 328 28 308 4.49e-53 179
Msa0479320 AT1G68170.2 31.443 388 232 5 13 393 5 365 4.82e-52 178
Msa0479320 AT1G25270.1 33.718 347 206 4 24 366 6 332 9.49e-52 177
Msa0479320 AT4G08290.2 37.165 261 154 2 17 277 9 259 9.59e-52 174
Msa0479320 AT1G68170.1 32.011 378 223 5 23 393 5 355 1.49e-51 176
Msa0479320 AT5G45370.6 36.332 289 161 6 104 386 1 272 8.40e-51 172
Msa0479320 AT5G45370.5 36.332 289 161 6 104 386 1 272 8.40e-51 172
Msa0479320 AT2G37450.2 31.250 368 204 8 25 388 13 335 1.16e-50 173
Msa0479320 AT1G11450.1 37.638 271 150 3 99 368 2 254 1.75e-49 168
Msa0479320 AT4G01440.4 39.167 240 132 2 40 278 29 255 1.62e-48 166
Msa0479320 AT4G01450.2 36.218 312 181 2 40 350 29 323 9.99e-48 166
Msa0479320 AT5G40210.1 30.659 349 203 10 24 367 16 330 5.83e-47 164
Msa0479320 AT4G01450.1 36.207 290 167 2 40 328 29 301 2.68e-46 162
Msa0479320 AT5G40230.1 29.487 390 245 10 1 382 1 368 4.39e-45 159
Msa0479320 AT5G40240.1 30.330 333 215 4 23 351 22 341 4.91e-45 159
Msa0479320 AT5G40240.3 30.330 333 215 4 23 351 22 341 4.91e-45 159
Msa0479320 AT5G40240.2 30.330 333 215 4 23 351 36 355 1.12e-44 159
Msa0479320 AT1G70260.1 29.558 362 233 5 37 392 28 373 3.96e-44 157
Msa0479320 AT3G28050.1 29.600 375 233 10 24 392 15 364 1.08e-43 156
Msa0479320 AT4G01440.5 36.564 227 130 2 122 347 3 216 1.88e-43 152
Msa0479320 AT4G01440.2 36.564 227 130 2 122 347 3 216 1.88e-43 152
Msa0479320 AT3G28130.2 31.065 338 211 9 21 352 13 334 6.18e-43 154
Msa0479320 AT3G30340.2 31.907 257 158 2 25 278 15 257 1.29e-42 150
Msa0479320 AT3G28130.5 33.068 251 156 4 103 352 9 248 5.92e-40 143
Msa0479320 AT3G28130.1 33.068 251 156 4 103 352 9 248 5.92e-40 143
Msa0479320 AT4G01450.4 35.833 240 136 2 40 278 29 251 5.62e-39 140
Msa0479320 AT5G47470.2 28.940 349 217 5 10 350 47 372 2.30e-38 142
Msa0479320 AT5G47470.3 28.940 349 217 5 10 350 47 372 2.33e-38 142
Msa0479320 AT5G47470.1 28.986 345 222 6 10 350 19 344 2.36e-38 141
Msa0479320 AT3G28100.1 30.448 335 214 9 23 352 16 336 2.54e-38 141
Msa0479320 AT2G37450.3 31.707 287 168 6 106 388 1 263 3.76e-38 138
Msa0479320 AT3G45870.5 38.318 214 128 4 133 345 49 259 4.43e-38 139
Msa0479320 AT5G45370.3 34.496 258 146 6 135 386 74 314 4.53e-38 140
Msa0479320 AT3G28070.2 29.008 262 174 3 104 364 8 258 1.62e-37 137
Msa0479320 AT3G28080.5 30.566 265 167 5 104 364 8 259 4.80e-37 135
Msa0479320 AT3G28080.7 30.566 265 167 5 104 364 8 259 4.80e-37 135
Msa0479320 AT3G28080.8 30.566 265 167 5 104 364 8 259 4.80e-37 135
Msa0479320 AT3G28080.6 30.566 265 167 5 104 364 8 259 4.80e-37 135
Msa0479320 AT3G28070.1 29.008 262 174 3 104 364 100 350 1.63e-36 136
Msa0479320 AT3G28080.2 30.566 265 167 5 104 364 89 340 2.71e-36 135
Msa0479320 AT3G28080.1 30.566 265 167 5 104 364 97 348 2.87e-36 135
Msa0479320 AT4G15540.1 29.429 333 205 7 23 351 19 325 1.05e-34 131
Msa0479320 AT4G15540.2 29.429 333 205 7 23 351 19 325 1.05e-34 131
Msa0479320 AT1G43650.2 32.171 258 156 3 22 277 8 248 2.43e-34 128
Msa0479320 AT5G64700.2 33.755 237 152 2 28 264 15 246 2.80e-34 128
Msa0479320 AT1G60050.1 29.063 320 217 3 37 352 29 342 5.00e-34 130
Msa0479320 AT4G16620.1 30.303 363 224 10 29 386 20 358 1.10e-33 129
Msa0479320 AT4G01450.3 37.500 208 112 2 40 246 29 219 1.56e-33 125
Msa0479320 AT3G45870.6 37.056 197 120 4 133 328 49 242 8.27e-33 124
Msa0479320 AT3G45870.7 37.056 197 120 4 133 328 49 242 8.27e-33 124
Msa0479320 AT4G01430.3 31.915 235 147 4 150 381 2 226 1.27e-32 122
Msa0479320 AT3G45870.2 42.254 142 81 1 204 345 43 183 1.98e-30 117
Msa0479320 AT4G24980.1 29.841 315 143 9 37 351 3 239 6.44e-29 114
Msa0479320 AT2G37450.1 32.571 175 110 2 215 388 129 296 3.62e-28 112
Msa0479320 AT3G28130.3 30.455 220 141 4 134 352 1 209 9.28e-28 109
Msa0479320 AT3G28070.3 27.434 226 152 3 104 328 100 314 6.80e-27 109
Msa0479320 AT3G28070.5 25.862 232 160 3 134 364 1 221 5.79e-25 102
Msa0479320 AT3G28080.9 27.234 235 154 5 134 364 1 222 1.50e-24 101
Msa0479320 AT4G16620.4 30.175 285 171 9 106 386 1 261 2.43e-22 95.9
Msa0479320 AT4G16620.2 30.175 285 171 9 106 386 1 261 2.43e-22 95.9
Msa0479320 AT3G45870.4 37.241 145 87 4 135 278 4 145 2.31e-21 90.1
Msa0479320 AT3G45870.3 37.415 147 88 4 133 278 49 192 2.56e-21 91.7
Msa0479320 AT4G16620.3 31.050 219 136 4 29 246 20 224 1.59e-20 90.9
Msa0479320 AT3G28130.4 29.644 253 157 8 21 267 13 250 2.91e-20 90.1
Msa0479320 AT3G28100.3 29.457 258 165 7 23 276 16 260 2.49e-18 84.7
Msa0479320 AT3G28130.6 34.591 159 96 4 21 175 13 167 4.88e-18 82.8
Msa0479320 AT3G28100.2 34.839 155 97 3 23 175 16 168 1.96e-16 79.0
Msa0479320 AT3G28080.4 44.737 76 40 1 104 177 8 83 1.26e-13 70.1
Msa0479320 AT3G28080.4 31.132 106 62 3 269 364 101 205 7.21e-12 65.1
Msa0479320 AT3G28080.3 44.737 76 40 1 104 177 97 172 3.96e-13 70.1
Msa0479320 AT3G28080.3 31.132 106 62 3 269 364 190 294 1.37e-11 65.5

Find 160 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATAGATGTCAATTAAATT+TGG 0.111724 3_3:-84274209 Msa0479320:three_prime_UTR
TTTGGTAAACAAAATTTATT+AGG 0.156606 3_3:-84274112 Msa0479320:three_prime_UTR
TGCCTATATATGTTAATTAA+TGG 0.166730 3_3:-84274163 Msa0479320:three_prime_UTR
AACTCTTGTTGTGGCTATTA+TGG 0.204204 3_3:-84275388 Msa0479320:CDS
CCTCTAAACAGCAGCATTAA+TGG 0.217047 3_3:-84277107 Msa0479320:CDS
CTTGGATGTTTGTACCTTAT+AGG 0.224383 3_3:-84277014 Msa0479320:CDS
TGTTCTAATATCATCATTAA+TGG 0.235933 3_3:-84278595 Msa0479320:five_prime_UTR
GCAATAATATTGCGGTAAAC+TGG 0.242432 3_3:+84278051 None:intergenic
AATTCAAAGTGCTTTCTTAC+TGG 0.252575 3_3:-84274273 Msa0479320:three_prime_UTR
ACTTCCTATACATGTTTCTT+TGG 0.256420 3_3:-84276915 Msa0479320:CDS
TATAGGCATAATGGGATTTC+AGG 0.258266 3_3:+84274178 None:intergenic
TTTAGGAGAAGAGTTCTATT+TGG 0.258282 3_3:-84275355 Msa0479320:CDS
TCAAAGCAATAATGAGAAAT+TGG 0.266484 3_3:+84276886 None:intergenic
CCAAATTTAATTGACATCTA+TGG 0.268831 3_3:+84274209 None:intergenic
TGATACACCGCAACGAAAAC+TGG 0.280768 3_3:+84275420 None:intergenic
ATTATGGCTTCCCTTGCTTT+AGG 0.284109 3_3:-84275372 Msa0479320:CDS
CATAGATGTCAATTAAATTT+GGG 0.311237 3_3:-84274208 Msa0479320:three_prime_UTR
TTTGTTCAATTATTATAGTT+TGG 0.312975 3_3:+84274010 None:intergenic
CCATTAATGCTGCTGTTTAG+AGG 0.328701 3_3:+84277107 None:intergenic
GCTGATTCAGGTGGATCTTC+GGG 0.328958 3_3:-84278204 Msa0479320:CDS
TTTATGAATGGGTTTGCTTT+TGG 0.335652 3_3:-84274298 Msa0479320:three_prime_UTR
TTAACATATATAGGCATAAT+GGG 0.337448 3_3:+84274170 None:intergenic
TTAGGAGAAGAGTTCTATTT+GGG 0.354674 3_3:-84275354 Msa0479320:CDS
GGCTGATTCAGGTGGATCTT+CGG 0.355763 3_3:-84278205 Msa0479320:CDS
ATTAACATATATAGGCATAA+TGG 0.357185 3_3:+84274169 None:intergenic
AGGTTGAGAAAGTGATGTTT+TGG 0.357252 3_3:+84274489 None:intergenic
CTCAATCTCATCACTGGGAT+TGG 0.359629 3_3:-84277063 Msa0479320:CDS
GCCATGTTGGCCCTGCAGTT+TGG 0.363749 3_3:-84278138 Msa0479320:CDS
ATGACAAACAATGTCCTATA+AGG 0.364535 3_3:+84277000 None:intergenic
AAATTCAAAGAGATCATAAC+AGG 0.364850 3_3:+84278562 None:intergenic
AAGTAGTAGTAATGTATATC+TGG 0.370668 3_3:+84274341 None:intergenic
GCCCTGCAGTTTGGATATGC+AGG 0.381834 3_3:-84278129 Msa0479320:CDS
TTTGTCATGGTCTGGTTGGC+TGG 0.389764 3_3:-84276985 Msa0479320:CDS
AATACAGTAATGGCTGATTC+AGG 0.391933 3_3:-84278216 Msa0479320:exon
TTGGTAAACAAAATTTATTA+GGG 0.392131 3_3:-84274111 Msa0479320:three_prime_UTR
GAAGAGGTGGTGGAAGAGTA+AGG 0.392825 3_3:+84278322 None:intergenic
AATTTATTAGGGAGAGCATA+AGG 0.394245 3_3:-84274100 Msa0479320:three_prime_UTR
AACCAGGGTTTCTACTTGCT+TGG 0.399423 3_3:-84277424 Msa0479320:CDS
AAGCCTGAGCATCTCTTTCA+AGG 0.401704 3_3:+84276862 None:intergenic
TTGTGATGTTACAGGATCAT+TGG 0.404975 3_3:-84274646 Msa0479320:intron
CTCAATCTCAATCTCATCAC+TGG 0.407185 3_3:-84277069 Msa0479320:CDS
GAAAACTCTAAACTTGAAAC+TGG 0.413543 3_3:-84274432 Msa0479320:three_prime_UTR
GGACATTGTTTGTCATGGTC+TGG 0.421517 3_3:-84276993 Msa0479320:CDS
GGGGTTATACCTAGTGTTGT+GGG 0.425622 3_3:-84274605 Msa0479320:CDS
AACCATTAATTAACATATAT+AGG 0.427174 3_3:+84274161 None:intergenic
CTGCTGTTTAGAGGTGGAAC+TGG 0.427694 3_3:+84277116 None:intergenic
CGGAGCATAGTAACATAATC+AGG 0.429439 3_3:-84274528 Msa0479320:CDS
ATTCAAAGTGCTTTCTTACT+GGG 0.430014 3_3:-84274272 Msa0479320:three_prime_UTR
TTGCATTCGCTGTACAGATA+TGG 0.431672 3_3:-84275461 Msa0479320:CDS
TCAGCTGCATGCGGCCATGT+TGG 0.431764 3_3:-84278151 Msa0479320:CDS
TATTATAAGATTATTAAGAA+TGG 0.433275 3_3:+84278283 None:intergenic
CTCAAGAGCTGCACTTAACA+TGG 0.436174 3_3:-84278094 Msa0479320:CDS
GATCCTTGAAAGAGATGCTC+AGG 0.436181 3_3:-84276865 Msa0479320:CDS
GCATGCAGCTGAAACCGTTC+TGG 0.437452 3_3:+84278162 None:intergenic
GAAGCTTGTGTGTTTATGAA+TGG 0.439160 3_3:-84274310 Msa0479320:three_prime_UTR
TCAATCTCATCACTGGGATT+GGG 0.458072 3_3:-84277062 Msa0479320:CDS
GGAGCAGTGTTGATCATTGT+GGG 0.460894 3_3:-84274625 Msa0479320:CDS
GGGTTTCTACTTGCTTGGCT+TGG 0.462522 3_3:-84277419 Msa0479320:CDS
GGCGAGCCGGATACTTCTTA+AGG 0.463392 3_3:+84276946 None:intergenic
GCCACAACAAGAGTTTGAAC+AGG 0.464692 3_3:+84275396 None:intergenic
TTGAAAGAGATGCTCAGGCT+TGG 0.468366 3_3:-84276860 Msa0479320:CDS
GGTATAAATATAGTGAAAGA+GGG 0.470755 3_3:+84278344 None:intergenic
TGGGGTTATACCTAGTGTTG+TGG 0.473197 3_3:-84274606 Msa0479320:CDS
ATTGTTTGTCATGGTCTGGT+TGG 0.476353 3_3:-84276989 Msa0479320:CDS
CAGCTGAAACCGTTCTGGTA+TGG 0.479979 3_3:+84278167 None:intergenic
GAAGTGGTGTGAAGAGGTGG+TGG 0.485056 3_3:+84278312 None:intergenic
TTGAACAGAAAGGATGGAAT+AGG 0.486366 3_3:-84277215 Msa0479320:CDS
TTGCAGGGAGTAGTGGCATC+AGG 0.488447 3_3:-84275486 Msa0479320:intron
ATGAATATCAAAGAAGAATG+TGG 0.489445 3_3:-84278445 Msa0479320:five_prime_UTR
ACCTGTCCTTAAGAAGTATC+CGG 0.489808 3_3:-84276952 Msa0479320:CDS
TGAATATCAAAGAAGAATGT+GGG 0.490144 3_3:-84278444 Msa0479320:five_prime_UTR
CATTACTACTACTTTATGTC+AGG 0.491278 3_3:-84274332 Msa0479320:three_prime_UTR
TTAAGAATGGAGAGAGGAAG+TGG 0.492254 3_3:+84278296 None:intergenic
CAGATATGGTGCATTGATAG+AGG 0.493778 3_3:-84275447 Msa0479320:CDS
ACCCTGCATATCCAAACTGC+AGG 0.493851 3_3:+84278127 None:intergenic
ATACAATTTCAGAATAGAAA+AGG 0.499386 3_3:-84277243 Msa0479320:intron
AAAGAAATTTGCAAGGGAGC+TGG 0.500926 3_3:-84274569 Msa0479320:CDS
TTATAGGACATTGTTTGTCA+TGG 0.505005 3_3:-84276998 Msa0479320:CDS
AAGTCCAAAGAAACATGTAT+AGG 0.507011 3_3:+84276911 None:intergenic
TGTATAGCTGATGCAAAGGT+TGG 0.507289 3_3:+84277385 None:intergenic
GGGTATAAATATAGTGAAAG+AGG 0.509614 3_3:+84278343 None:intergenic
CCCTGCAGTTTGGATATGCA+GGG 0.509922 3_3:-84278128 Msa0479320:CDS
ATTTATTAGGGAGAGCATAA+GGG 0.510005 3_3:-84274099 Msa0479320:three_prime_UTR
AATTAATTTAAATTTATCAA+AGG 0.510423 3_3:-84278515 Msa0479320:five_prime_UTR
AAAAGGAAGGAGGAGAAGAA+AGG 0.512453 3_3:+84278029 None:intergenic
CAATAATATTGCGGTAAACT+GGG 0.512889 3_3:+84278052 None:intergenic
GCCGGATACTTCTTAAGGAC+AGG 0.515533 3_3:+84276951 None:intergenic
AAGCTTGTGTGTTTATGAAT+GGG 0.517113 3_3:-84274309 Msa0479320:three_prime_UTR
CTGGGATTGGGAGATGCAAA+AGG 0.517390 3_3:-84277050 Msa0479320:CDS
GAGAAGAGTTCTATTTGGGA+GGG 0.519169 3_3:-84275350 Msa0479320:intron
ACACAGGATTACAGCCAACC+AGG 0.519218 3_3:-84277440 Msa0479320:intron
GGTTGTCTTGTCAGCAAAGG+AGG 0.520471 3_3:-84278475 Msa0479320:five_prime_UTR
GAGGAAGTGGTGTGAAGAGG+TGG 0.525566 3_3:+84278309 None:intergenic
CTGATTATGTTACTATGCTC+CGG 0.528035 3_3:+84274529 None:intergenic
GGAGAAGAGTTCTATTTGGG+AGG 0.530894 3_3:-84275351 Msa0479320:CDS
TGGAGCAGTGTTGATCATTG+TGG 0.532059 3_3:-84274626 Msa0479320:CDS
GAAGTGACAGAGAGGCGAGC+CGG 0.532938 3_3:+84276933 None:intergenic
AGAAAGTTGAAAGTAATAGC+TGG 0.533149 3_3:+84277845 None:intergenic
CTGGGATAACATGTAGAATG+AGG 0.538002 3_3:-84274254 Msa0479320:three_prime_UTR
CTTGTCAGCAAAGGAGGGTG+TGG 0.539463 3_3:-84278469 Msa0479320:five_prime_UTR
ACCTCTTCTCCCTTCATCAA+CGG 0.543925 3_3:-84274470 Msa0479320:CDS
AATGATATTGCAGGGAGTAG+TGG 0.547741 3_3:-84275493 Msa0479320:intron
AAGAGGTGGTGGAAGAGTAA+GGG 0.557973 3_3:+84278323 None:intergenic
CTAAGAAGTAGGCAAAAGGA+AGG 0.557992 3_3:+84278016 None:intergenic
AATGATGATATTAGAACAAG+AGG 0.559613 3_3:+84278600 None:intergenic
GTGGATCTTCGGGGAGAATG+TGG 0.560514 3_3:-84278194 Msa0479320:CDS
GGAACTGGACTGTATATTGT+TGG 0.563287 3_3:+84277131 None:intergenic
AGAACTCTTCTCCTAAAGCA+AGG 0.563349 3_3:+84275361 None:intergenic
TTAATGGTTTGATTTACAGA+AGG 0.563496 3_3:-84274147 Msa0479320:three_prime_UTR
TCCAAACTGCAGGGCCAACA+TGG 0.564674 3_3:+84278137 None:intergenic
GATACACCGCAACGAAAACT+GGG 0.571780 3_3:+84275421 None:intergenic
GCTAGATCATAATACAGTAA+TGG 0.572199 3_3:-84278226 Msa0479320:exon
TTCTCATGGCAGTTATACTC+AGG 0.573050 3_3:-84277339 Msa0479320:intron
ACCAGCCATTACATTTCTCA+TGG 0.574113 3_3:-84277353 Msa0479320:CDS
GGCAGCAATCACTTCCACTC+CGG 0.576279 3_3:-84274548 Msa0479320:CDS
ACGAAGAAAAGAAATTTGCA+AGG 0.577476 3_3:-84274576 Msa0479320:CDS
TCCGTTGATGAAGGGAGAAG+AGG 0.579930 3_3:+84274469 None:intergenic
CACAGGATTACAGCCAACCA+GGG 0.585971 3_3:-84277439 Msa0479320:intron
ACCTGTTCAAACTCTTGTTG+TGG 0.587524 3_3:-84275397 Msa0479320:CDS
CTATAAGGTACAAACATCCA+AGG 0.588308 3_3:+84277015 None:intergenic
AACTGCCATGAGAAATGTAA+TGG 0.589675 3_3:+84277348 None:intergenic
GTGCGGTTGAACAGAAAGGA+TGG 0.591081 3_3:-84277221 Msa0479320:CDS
AAAGGTGCGGTTGAACAGAA+AGG 0.592072 3_3:-84277225 Msa0479320:CDS
TCAATCTCAATCTCATCACT+GGG 0.594573 3_3:-84277068 Msa0479320:CDS
TAGTAATGTATATCTGGCCA+TGG 0.596808 3_3:+84274347 None:intergenic
GTGCAGCTCTTGAGACGACA+TGG 0.599138 3_3:+84278103 None:intergenic
CAGAAAGGATGGAATAGGAA+AGG 0.600178 3_3:-84277210 Msa0479320:CDS
AAATGAAGAAAATGCTACCA+TGG 0.600596 3_3:-84274364 Msa0479320:three_prime_UTR
GAACTCTTCTCCTAAAGCAA+GGG 0.601075 3_3:+84275362 None:intergenic
AGCCAAGCAAGTAGAAACCC+TGG 0.603068 3_3:+84277422 None:intergenic
AGATTATTAAGAATGGAGAG+AGG 0.603980 3_3:+84278290 None:intergenic
CGAAGAAAAGAAATTTGCAA+GGG 0.607837 3_3:-84274575 Msa0479320:CDS
AGAGAGGAAGTGGTGTGAAG+AGG 0.608748 3_3:+84278306 None:intergenic
TTAATGCTGCTGTTTAGAGG+TGG 0.608851 3_3:+84277110 None:intergenic
GATGGAATAGGAAAGGTGGC+AGG 0.613834 3_3:-84277203 Msa0479320:CDS
GGAGGTTGTCTTGTCAGCAA+AGG 0.620039 3_3:-84278478 Msa0479320:five_prime_UTR
ATTCTGTATAGCTGATGCAA+AGG 0.622901 3_3:+84277381 None:intergenic
GTATAAATATAGTGAAAGAG+GGG 0.626247 3_3:+84278345 None:intergenic
ACAGTAATGGCTGATTCAGG+TGG 0.627179 3_3:-84278213 Msa0479320:exon
GAAGAAAGGCAATAATATTG+CGG 0.628252 3_3:+84278043 None:intergenic
ATTTCAGAATAGAAAAGGTG+CGG 0.629935 3_3:-84277238 Msa0479320:intron
GGGTTATACCTAGTGTTGTG+GGG 0.633805 3_3:-84274604 Msa0479320:CDS
AGAAGTAGGCAAAAGGAAGG+AGG 0.634893 3_3:+84278019 None:intergenic
GCCATGAGAAATGTAATGGC+TGG 0.637647 3_3:+84277352 None:intergenic
GTTGTCTTGTCAGCAAAGGA+GGG 0.640114 3_3:-84278474 Msa0479320:five_prime_UTR
CTGATTCAGGTGGATCTTCG+GGG 0.648140 3_3:-84278203 Msa0479320:CDS
AGAACGGTTTCAGCTGCATG+CGG 0.650802 3_3:-84278160 Msa0479320:CDS
TCAAGAGCTGCACTTAACAT+GGG 0.652569 3_3:-84278093 Msa0479320:CDS
TATAAGGTACAAACATCCAA+GGG 0.653632 3_3:+84277016 None:intergenic
CCCTGCATATCCAAACTGCA+GGG 0.660971 3_3:+84278128 None:intergenic
AAGCAAGTAGAAACCCTGGT+TGG 0.660998 3_3:+84277426 None:intergenic
AAAGGATGGAATAGGAAAGG+TGG 0.662240 3_3:-84277207 Msa0479320:CDS
TATGTTACTATGCTCCGGAG+TGG 0.664769 3_3:+84274534 None:intergenic
ATATGGTGCATTGATAGAGG+AGG 0.677684 3_3:-84275444 Msa0479320:CDS
GAGCAGTGTTGATCATTGTG+GGG 0.677789 3_3:-84274624 Msa0479320:CDS
CTAAACAGCAGCATTAATGG+TGG 0.679207 3_3:-84277104 Msa0479320:CDS
TCAGTGATTACACTATACAA+AGG 0.680062 3_3:-84277155 Msa0479320:CDS
TGTGGTGCTCCATACCAGAA+CGG 0.693501 3_3:-84278176 Msa0479320:CDS
ATGTATAGGAAGTGACAGAG+AGG 0.721692 3_3:+84276925 None:intergenic
AATTCAAAGAGATCATAACA+GGG 0.726017 3_3:+84278563 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATAAGATTATTAAGAA+TGG + chr3_3:84274313-84274332 None:intergenic 10.0%
!! TATAATCTAAATTTATATTG+TGG - chr3_3:84274933-84274952 Msa0479320:intron 10.0%
!! AAATTAAATGAATGAATTAA+GGG + chr3_3:84275298-84275317 None:intergenic 10.0%
!! TAAATTAAATGAATGAATTA+AGG + chr3_3:84275299-84275318 None:intergenic 10.0%
!! ATATATATGACATATTAAAT+TGG + chr3_3:84275811-84275830 None:intergenic 10.0%
!! ACAAAATAATAATATATTTC+CGG + chr3_3:84275925-84275944 None:intergenic 10.0%
!! ATTTATTAAAACCAAATATA+GGG + chr3_3:84276021-84276040 None:intergenic 10.0%
!! TATTTATTAAAACCAAATAT+AGG + chr3_3:84276022-84276041 None:intergenic 10.0%
!!! TTGGTTTTAATAAATATTAT+TGG - chr3_3:84276026-84276045 Msa0479320:intron 10.0%
!!! AGTAGATATAATATTTTTTA+AGG - chr3_3:84276276-84276295 Msa0479320:intron 10.0%
!!! GTAGATATAATATTTTTTAA+GGG - chr3_3:84276277-84276296 Msa0479320:intron 10.0%
!!! TAGATATAATATTTTTTAAG+GGG - chr3_3:84276278-84276297 Msa0479320:intron 10.0%
!! ATTTATACTATGTTAATTAG+TGG + chr3_3:84274627-84274646 None:intergenic 15.0%
!! AAATTAACATACATAAAAGT+TGG - chr3_3:84274643-84274662 Msa0479320:intron 15.0%
!! TATTATATTGTTAGAAAATG+TGG - chr3_3:84274904-84274923 Msa0479320:intron 15.0%
!! TTTAAATCATTTATATACTG+CGG - chr3_3:84274982-84275001 Msa0479320:intron 15.0%
!!! ATATATTGGCTTTTATATAT+TGG - chr3_3:84276084-84276103 Msa0479320:intron 15.0%
!!! TTTTTTTACATAATGATGTT+TGG - chr3_3:84276656-84276675 Msa0479320:intron 15.0%
!!! TTATATTGATTTTATCTTAG+AGG - chr3_3:84276754-84276773 Msa0479320:intron 15.0%
!!! ATAATGTTCTAAAGATATAA+TGG - chr3_3:84276959-84276978 Msa0479320:CDS 15.0%
!! TTAAAAATAAAGCAAAAAGA+GGG + chr3_3:84277304-84277323 None:intergenic 15.0%
!! ATTAAAAATAAAGCAAAAAG+AGG + chr3_3:84277305-84277324 None:intergenic 15.0%
!! TTATAATAAAATAAAATGCG+TGG + chr3_3:84277442-84277461 None:intergenic 15.0%
!!! TTTTCTTTTGTAATAAAGAT+AGG + chr3_3:84277882-84277901 None:intergenic 15.0%
!! TATTACAAAAGAAAAAGAAA+TGG - chr3_3:84277887-84277906 Msa0479320:intron 15.0%
!! ATTCATAAAAGTTATTTACA+AGG + chr3_3:84277916-84277935 None:intergenic 15.0%
!!! TTGTAAATAACTTTTATGAA+TGG - chr3_3:84277915-84277934 Msa0479320:intron 15.0%
!! CTTGAAAAGATTTAAAAAAT+AGG - chr3_3:84278195-84278214 Msa0479320:CDS 15.0%
!! AACCATTAATTAACATATAT+AGG + chr3_3:84278435-84278454 None:intergenic 15.0%
!! TTTGGTAAACAAAATTTATT+AGG - chr3_3:84278481-84278500 Msa0479320:five_prime_UTR 15.0%
!! TTGGTAAACAAAATTTATTA+GGG - chr3_3:84278482-84278501 Msa0479320:five_prime_UTR 15.0%
!! TTTGTTCAATTATTATAGTT+TGG + chr3_3:84278586-84278605 None:intergenic 15.0%
!! TGTTCTAATATCATCATTAA+TGG - chr3_3:84273998-84274017 Msa0479320:three_prime_UTR 20.0%
!! AACTTATGTTATGTATTGTA+CGG + chr3_3:84274671-84274690 None:intergenic 20.0%
!!! TTTTACTTTAAGTAATGAGT+GGG + chr3_3:84274820-84274839 None:intergenic 20.0%
!! AAAAGAAGTAAAAAAAACGA+TGG - chr3_3:84274836-84274855 Msa0479320:intron 20.0%
!!! TCTTTTAAGTATAACAAAAC+AGG + chr3_3:84275051-84275070 None:intergenic 20.0%
!! ATACAATTTCAGAATAGAAA+AGG - chr3_3:84275350-84275369 Msa0479320:intron 20.0%
!! ATATATAAAGACAACTCTAA+CGG + chr3_3:84276070-84276089 None:intergenic 20.0%
!! TTAGAGTTGTCTTTATATAT+TGG - chr3_3:84276070-84276089 Msa0479320:intron 20.0%
!! ATCTAAAAGTCTAAAAACAT+TGG - chr3_3:84276136-84276155 Msa0479320:intron 20.0%
!! TCTAAAAGTCTAAAAACATT+GGG - chr3_3:84276137-84276156 Msa0479320:intron 20.0%
!! CATTGTTAATACTAAATATG+CGG + chr3_3:84276248-84276267 None:intergenic 20.0%
!! GATGAAATTTCATATAATCT+TGG + chr3_3:84276379-84276398 None:intergenic 20.0%
!! TGAATAAAAACCTAATGATA+TGG - chr3_3:84276405-84276424 Msa0479320:intron 20.0%
!! AATTTACATCTTAATAAAGC+TGG - chr3_3:84276788-84276807 Msa0479320:intron 20.0%
!! AATGTATATTAGTAGTACAT+AGG + chr3_3:84277063-84277082 None:intergenic 20.0%
!! TTAATATACAATGATATTGC+AGG - chr3_3:84277091-84277110 Msa0479320:CDS 20.0%
!! TAATATACAATGATATTGCA+GGG - chr3_3:84277092-84277111 Msa0479320:CDS 20.0%
!! GAAAATGAATGAAAAAGATA+AGG + chr3_3:84277282-84277301 None:intergenic 20.0%
!! TATGTATGTGATGAAATTAA+AGG + chr3_3:84277348-84277367 None:intergenic 20.0%
!! CATAGATGTCAATTAAATTT+GGG - chr3_3:84278385-84278404 Msa0479320:five_prime_UTR 20.0%
!! TTAACATATATAGGCATAAT+GGG + chr3_3:84278426-84278445 None:intergenic 20.0%
!! ATTAACATATATAGGCATAA+TGG + chr3_3:84278427-84278446 None:intergenic 20.0%
!! TGCCTATATATGTTAATTAA+TGG - chr3_3:84278430-84278449 Msa0479320:five_prime_UTR 20.0%
!!! TCTTAATCTTTTCGATTTAA+TGG + chr3_3:84278530-84278549 None:intergenic 20.0%
! AATTCAAAGAGATCATAACA+GGG + chr3_3:84274033-84274052 None:intergenic 25.0%
! AAATTCAAAGAGATCATAAC+AGG + chr3_3:84274034-84274053 None:intergenic 25.0%
!!! TTATCAAAGGTTTTTAAGTG+CGG - chr3_3:84274091-84274110 Msa0479320:three_prime_UTR 25.0%
! ATGAATATCAAAGAAGAATG+TGG - chr3_3:84274148-84274167 Msa0479320:three_prime_UTR 25.0%
! TGAATATCAAAGAAGAATGT+GGG - chr3_3:84274149-84274168 Msa0479320:three_prime_UTR 25.0%
! GTATAAATATAGTGAAAGAG+GGG + chr3_3:84274251-84274270 None:intergenic 25.0%
! GGTATAAATATAGTGAAAGA+GGG + chr3_3:84274252-84274271 None:intergenic 25.0%
!!! TAACTAGCTAGTCTTTTAAT+TGG + chr3_3:84274347-84274366 None:intergenic 25.0%
! AATTAGTGGAGGTAATATAT+AGG + chr3_3:84274613-84274632 None:intergenic 25.0%
! TATACTATGTTAATTAGTGG+AGG + chr3_3:84274624-84274643 None:intergenic 25.0%
!!! ATAGTTCTACTTTTTTGTTC+AGG - chr3_3:84274716-84274735 Msa0479320:intron 25.0%
! TTTACTTTAAGTAATGAGTG+GGG + chr3_3:84274819-84274838 None:intergenic 25.0%
!! CTTTTACTTTAAGTAATGAG+TGG + chr3_3:84274821-84274840 None:intergenic 25.0%
! AAAAAAAACGATGGAAATCA+TGG - chr3_3:84274845-84274864 Msa0479320:intron 25.0%
!!! ATGGTTTTAAATTACAGTTG+TGG - chr3_3:84274864-84274883 Msa0479320:intron 25.0%
! TAATACTAATGTTTCCATCA+TGG + chr3_3:84275023-84275042 None:intergenic 25.0%
! AAATGAAATTTGCATTACAC+AGG - chr3_3:84275137-84275156 Msa0479320:intron 25.0%
! TCAAAGCAATAATGAGAAAT+TGG + chr3_3:84275710-84275729 None:intergenic 25.0%
!! AGTTTTTACTATTTTGTACG+CGG - chr3_3:84275776-84275795 Msa0479320:intron 25.0%
! TATACTTTCAAAGTGACTTT+GGG - chr3_3:84275981-84276000 Msa0479320:intron 25.0%
! TATATAAAGACAACTCTAAC+GGG + chr3_3:84276069-84276088 None:intergenic 25.0%
!!! TTTTATATATTGGCCTTTAG+TGG - chr3_3:84276094-84276113 Msa0479320:intron 25.0%
! CTAAAAGTCTAAAAACATTG+GGG - chr3_3:84276138-84276157 Msa0479320:intron 25.0%
!!! CACTATTTTTATCCAATATG+TGG - chr3_3:84276182-84276201 Msa0479320:intron 25.0%
!!! TTCATTTTGACCATATCATT+AGG + chr3_3:84276418-84276437 None:intergenic 25.0%
! GTTGTAGCTTCATAAATATA+CGG + chr3_3:84276514-84276533 None:intergenic 25.0%
! AAGATGTAAATTCTGATGTA+TGG + chr3_3:84276780-84276799 None:intergenic 25.0%
!!! CACTTTGTAGTCTTTTTTTT+TGG - chr3_3:84276816-84276835 Msa0479320:intron 25.0%
!!! TGTTCTAAAGATATAATGGT+AGG - chr3_3:84276963-84276982 Msa0479320:CDS 25.0%
!! TGTAATCTTGATAACTTTCA+TGG - chr3_3:84277415-84277434 Msa0479320:CDS 25.0%
!!! TTCATTTGTCGTTTTCAAAA+TGG + chr3_3:84277508-84277527 None:intergenic 25.0%
!!! AATCTTTTCAAGATAATGCT+GGG + chr3_3:84278187-84278206 None:intergenic 25.0%
!!! AAATCTTTTCAAGATAATGC+TGG + chr3_3:84278188-84278207 None:intergenic 25.0%
! AAGTAGTAGTAATGTATATC+TGG + chr3_3:84278255-84278274 None:intergenic 25.0%
!!! ATGTAGAATGAGGTTTTTTA+TGG - chr3_3:84278349-84278368 Msa0479320:five_prime_UTR 25.0%
!!! TGTAGAATGAGGTTTTTTAT+GGG - chr3_3:84278350-84278369 Msa0479320:five_prime_UTR 25.0%
! CCAAATTTAATTGACATCTA+TGG + chr3_3:84278387-84278406 None:intergenic 25.0%
! CCATAGATGTCAATTAAATT+TGG - chr3_3:84278384-84278403 Msa0479320:five_prime_UTR 25.0%
!! TTAATGGTTTGATTTACAGA+AGG - chr3_3:84278446-84278465 Msa0479320:five_prime_UTR 25.0%
!!! AGAAGGATATTATTTTGCTT+TGG - chr3_3:84278463-84278482 Msa0479320:five_prime_UTR 25.0%
! GTTGACAAAACGTCTTTTTA+TGG - chr3_3:84274205-84274224 Msa0479320:three_prime_UTR 30.0%
GGGTATAAATATAGTGAAAG+AGG + chr3_3:84274253-84274272 None:intergenic 30.0%
AGATTATTAAGAATGGAGAG+AGG + chr3_3:84274306-84274325 None:intergenic 30.0%
GCTAGATCATAATACAGTAA+TGG - chr3_3:84274367-84274386 Msa0479320:three_prime_UTR 30.0%
CAATAATATTGCGGTAAACT+GGG + chr3_3:84274544-84274563 None:intergenic 30.0%
GAAGAAAGGCAATAATATTG+CGG + chr3_3:84274553-84274572 None:intergenic 30.0%
!! TTTTCTAAGAAGTAGGCAAA+AGG + chr3_3:84274584-84274603 None:intergenic 30.0%
!! GACTAACTTTTCTAAGAAGT+AGG + chr3_3:84274591-84274610 None:intergenic 30.0%
!!! TTCTACTTTTTTGTTCAGGA+AGG - chr3_3:84274720-84274739 Msa0479320:intron 30.0%
AGAAAGTTGAAAGTAATAGC+TGG + chr3_3:84274751-84274770 None:intergenic 30.0%
!! GTTTTAAATTACAGTTGTGG+TGG - chr3_3:84274867-84274886 Msa0479320:intron 30.0%
! TTTGCAATTTGAAACCATGA+TGG - chr3_3:84275006-84275025 Msa0479320:intron 30.0%
ATTTCAGAATAGAAAAGGTG+CGG - chr3_3:84275355-84275374 Msa0479320:CDS 30.0%
TCAGTGATTACACTATACAA+AGG - chr3_3:84275438-84275457 Msa0479320:CDS 30.0%
TATAAGGTACAAACATCCAA+GGG + chr3_3:84275580-84275599 None:intergenic 30.0%
ATGACAAACAATGTCCTATA+AGG + chr3_3:84275596-84275615 None:intergenic 30.0%
TTATAGGACATTGTTTGTCA+TGG - chr3_3:84275595-84275614 Msa0479320:intron 30.0%
ACTTCCTATACATGTTTCTT+TGG - chr3_3:84275678-84275697 Msa0479320:intron 30.0%
AAGTCCAAAGAAACATGTAT+AGG + chr3_3:84275685-84275704 None:intergenic 30.0%
TAGAAAATCAAACATGTGTC+CGG - chr3_3:84275903-84275922 Msa0479320:intron 30.0%
!!! CACTGTTTTTATCTTCTTTC+CGG - chr3_3:84275955-84275974 Msa0479320:intron 30.0%
! TCACTTTGAAAGTATACTTC+CGG + chr3_3:84275977-84275996 None:intergenic 30.0%
GTATACTTTCAAAGTGACTT+TGG - chr3_3:84275980-84275999 Msa0479320:intron 30.0%
ATACTTTCAAAGTGACTTTG+GGG - chr3_3:84275982-84276001 Msa0479320:intron 30.0%
ATATAAAGACAACTCTAACG+GGG + chr3_3:84276068-84276087 None:intergenic 30.0%
AATAGTGCTAAAAACATGTG+AGG + chr3_3:84276169-84276188 None:intergenic 30.0%
! AAGTTAATTTTGAGCTAAGC+GGG + chr3_3:84276590-84276609 None:intergenic 30.0%
! GAAGTTAATTTTGAGCTAAG+CGG + chr3_3:84276591-84276610 None:intergenic 30.0%
AAAAAAGACTACAAAGTGCA+TGG + chr3_3:84276814-84276833 None:intergenic 30.0%
TTTAGGAGAAGAGTTCTATT+TGG - chr3_3:84277238-84277257 Msa0479320:intron 30.0%
TTAGGAGAAGAGTTCTATTT+GGG - chr3_3:84277239-84277258 Msa0479320:intron 30.0%
ATGAAAAAGATAAGGTAGCT+AGG + chr3_3:84277274-84277293 None:intergenic 30.0%
! ACTGACTCAACTAAGAAAAA+AGG - chr3_3:84277598-84277617 Msa0479320:intron 30.0%
GCTATTATTACAAGCACTAT+TGG - chr3_3:84277624-84277643 Msa0479320:intron 30.0%
TTAATGATTCCATGTTCCAT+AGG - chr3_3:84277810-84277829 Msa0479320:intron 30.0%
TAATGATTCCATGTTCCATA+GGG - chr3_3:84277811-84277830 Msa0479320:intron 30.0%
!!! TTTAAGCTTTTTTGACCCTA+TGG + chr3_3:84277829-84277848 None:intergenic 30.0%
ACGAAGAAAAGAAATTTGCA+AGG - chr3_3:84278017-84278036 Msa0479320:CDS 30.0%
CGAAGAAAAGAAATTTGCAA+GGG - chr3_3:84278018-84278037 Msa0479320:CDS 30.0%
!! AAACATTTTCCGTTGATGAA+GGG + chr3_3:84278135-84278154 None:intergenic 30.0%
GAAAACTCTAAACTTGAAAC+TGG - chr3_3:84278161-84278180 Msa0479320:CDS 30.0%
AAATGAAGAAAATGCTACCA+TGG - chr3_3:84278229-84278248 Msa0479320:exon 30.0%
CATTACTACTACTTTATGTC+AGG - chr3_3:84278261-84278280 Msa0479320:five_prime_UTR 30.0%
AAGCTTGTGTGTTTATGAAT+GGG - chr3_3:84278284-84278303 Msa0479320:five_prime_UTR 30.0%
!! TTTATGAATGGGTTTGCTTT+TGG - chr3_3:84278295-84278314 Msa0479320:five_prime_UTR 30.0%
! AATTCAAAGTGCTTTCTTAC+TGG - chr3_3:84278320-84278339 Msa0479320:five_prime_UTR 30.0%
! ATTCAAAGTGCTTTCTTACT+GGG - chr3_3:84278321-84278340 Msa0479320:five_prime_UTR 30.0%
! AATTTATTAGGGAGAGCATA+AGG - chr3_3:84278493-84278512 Msa0479320:five_prime_UTR 30.0%
! ATTTATTAGGGAGAGCATAA+GGG - chr3_3:84278494-84278513 Msa0479320:five_prime_UTR 30.0%
! AAAGACGTTTTGTCAACTGT+TGG + chr3_3:84274202-84274221 None:intergenic 35.0%
! ACGTCTTTTTATGGTCATTG+TGG - chr3_3:84274214-84274233 Msa0479320:three_prime_UTR 35.0%
! CGTCTTTTTATGGTCATTGT+GGG - chr3_3:84274215-84274234 Msa0479320:three_prime_UTR 35.0%
! GTCTTTTTATGGTCATTGTG+GGG - chr3_3:84274216-84274235 Msa0479320:three_prime_UTR 35.0%
! AATACAGTAATGGCTGATTC+AGG - chr3_3:84274377-84274396 Msa0479320:three_prime_UTR 35.0%
GCAATAATATTGCGGTAAAC+TGG + chr3_3:84274545-84274564 None:intergenic 35.0%
TATATAGCTTCATGACAACG+TGG + chr3_3:84275086-84275105 None:intergenic 35.0%
ATTCTGTATAGCTGATGCAA+AGG + chr3_3:84275215-84275234 None:intergenic 35.0%
AACTGCCATGAGAAATGTAA+TGG + chr3_3:84275248-84275267 None:intergenic 35.0%
TTGAACAGAAAGGATGGAAT+AGG - chr3_3:84275378-84275397 Msa0479320:CDS 35.0%
TCAATCTCAATCTCATCACT+GGG - chr3_3:84275525-84275544 Msa0479320:intron 35.0%
GAGATGCAAAAGGAAAAAAC+TGG - chr3_3:84275553-84275572 Msa0479320:intron 35.0%
CTATAAGGTACAAACATCCA+AGG + chr3_3:84275581-84275600 None:intergenic 35.0%
CTTGGATGTTTGTACCTTAT+AGG - chr3_3:84275579-84275598 Msa0479320:intron 35.0%
! AAAGTGACTTTGGGGAATAT+AGG - chr3_3:84275990-84276009 Msa0479320:intron 35.0%
TATAGGAAGCTCCCTATATT+TGG - chr3_3:84276007-84276026 Msa0479320:intron 35.0%
TGAAAACGAAGTCCACATAT+TGG + chr3_3:84276197-84276216 None:intergenic 35.0%
!!! TTGTTTTTGCATCAAGTCCT+TGG - chr3_3:84276485-84276504 Msa0479320:intron 35.0%
TCATAAATATACGGTGACCA+AGG + chr3_3:84276505-84276524 None:intergenic 35.0%
! TCTCTACACCAAAAAGCATA+AGG + chr3_3:84276619-84276638 None:intergenic 35.0%
! AACTCTTGTTGTGGCTATTA+TGG - chr3_3:84277205-84277224 Msa0479320:CDS 35.0%
!!! TTTTTTGACCCTATGGAACA+TGG + chr3_3:84277822-84277841 None:intergenic 35.0%
ATCCTGTAACATCACAAATG+TGG + chr3_3:84277944-84277963 None:intergenic 35.0%
TTGTGATGTTACAGGATCAT+TGG - chr3_3:84277947-84277966 Msa0479320:intron 35.0%
CTGATTATGTTACTATGCTC+CGG + chr3_3:84278067-84278086 None:intergenic 35.0%
!!! AAAGTGATGTTTTGGCATGA+TGG + chr3_3:84278099-84278118 None:intergenic 35.0%
! AGGTTGAGAAAGTGATGTTT+TGG + chr3_3:84278107-84278126 None:intergenic 35.0%
!! CAAACATTTTCCGTTGATGA+AGG + chr3_3:84278136-84278155 None:intergenic 35.0%
TAGTAATGTATATCTGGCCA+TGG + chr3_3:84278249-84278268 None:intergenic 35.0%
GAAGCTTGTGTGTTTATGAA+TGG - chr3_3:84278283-84278302 Msa0479320:five_prime_UTR 35.0%
! TATAGGCATAATGGGATTTC+AGG + chr3_3:84278418-84278437 None:intergenic 35.0%
!!! TCAAAGGTTTTTAAGTGCGG+TGG - chr3_3:84274094-84274113 Msa0479320:three_prime_UTR 40.0%
TTAAGAATGGAGAGAGGAAG+TGG + chr3_3:84274300-84274319 None:intergenic 40.0%
TCAAGAGCTGCACTTAACAT+GGG - chr3_3:84274500-84274519 Msa0479320:CDS 40.0%
AAAAGGAAGGAGGAGAAGAA+AGG + chr3_3:84274567-84274586 None:intergenic 40.0%
CTAAGAAGTAGGCAAAAGGA+AGG + chr3_3:84274580-84274599 None:intergenic 40.0%
!!! CTTTTTTGTTCAGGAAGGAG+AGG - chr3_3:84274725-84274744 Msa0479320:intron 40.0%
AAAAATTGCATACCCGACGA+GGG + chr3_3:84274794-84274813 None:intergenic 40.0%
AAAAAATTGCATACCCGACG+AGG + chr3_3:84274795-84274814 None:intergenic 40.0%
TGTATAGCTGATGCAAAGGT+TGG + chr3_3:84275211-84275230 None:intergenic 40.0%
ACCAGCCATTACATTTCTCA+TGG - chr3_3:84275240-84275259 Msa0479320:intron 40.0%
TTCTCATGGCAGTTATACTC+AGG - chr3_3:84275254-84275273 Msa0479320:intron 40.0%
CAGAAAGGATGGAATAGGAA+AGG - chr3_3:84275383-84275402 Msa0479320:CDS 40.0%
AAAGGATGGAATAGGAAAGG+TGG - chr3_3:84275386-84275405 Msa0479320:CDS 40.0%
!! GGAACATTGTTTTGTGTTGC+AGG - chr3_3:84275411-84275430 Msa0479320:CDS 40.0%
GGAACTGGACTGTATATTGT+TGG + chr3_3:84275465-84275484 None:intergenic 40.0%
! TTAATGCTGCTGTTTAGAGG+TGG + chr3_3:84275486-84275505 None:intergenic 40.0%
! CCATTAATGCTGCTGTTTAG+AGG + chr3_3:84275489-84275508 None:intergenic 40.0%
CCTCTAAACAGCAGCATTAA+TGG - chr3_3:84275486-84275505 Msa0479320:intron 40.0%
CTAAACAGCAGCATTAATGG+TGG - chr3_3:84275489-84275508 Msa0479320:intron 40.0%
CTCAATCTCAATCTCATCAC+TGG - chr3_3:84275524-84275543 Msa0479320:intron 40.0%
TCAATCTCATCACTGGGATT+GGG - chr3_3:84275531-84275550 Msa0479320:intron 40.0%
AAAGGAAAAAACTGGACCCT+TGG - chr3_3:84275561-84275580 Msa0479320:intron 40.0%
ATTGTTTGTCATGGTCTGGT+TGG - chr3_3:84275604-84275623 Msa0479320:intron 40.0%
!! ACCTGTCCTTAAGAAGTATC+CGG - chr3_3:84275641-84275660 Msa0479320:intron 40.0%
ATGTATAGGAAGTGACAGAG+AGG + chr3_3:84275671-84275690 None:intergenic 40.0%
!! CAGGCTTGGATTTTTCAATC+TGG - chr3_3:84275747-84275766 Msa0479320:intron 40.0%
!! GCTTGGATTTTTCAATCTGG+TGG - chr3_3:84275750-84275769 Msa0479320:intron 40.0%
GCCTTTAGTGGTCTAAACTT+GGG - chr3_3:84276106-84276125 Msa0479320:intron 40.0%
CCTTTAGTGGTCTAAACTTG+GGG - chr3_3:84276107-84276126 Msa0479320:intron 40.0%
GAAGCTACAACTTGTAGCAT+CGG - chr3_3:84276523-84276542 Msa0479320:intron 40.0%
AATGATATTGCAGGGAGTAG+TGG - chr3_3:84277100-84277119 Msa0479320:CDS 40.0%
TTGCATTCGCTGTACAGATA+TGG - chr3_3:84277132-84277151 Msa0479320:CDS 40.0%
! CAGATATGGTGCATTGATAG+AGG - chr3_3:84277146-84277165 Msa0479320:CDS 40.0%
! ATATGGTGCATTGATAGAGG+AGG - chr3_3:84277149-84277168 Msa0479320:CDS 40.0%
ACCTGTTCAAACTCTTGTTG+TGG - chr3_3:84277196-84277215 Msa0479320:CDS 40.0%
ATTATGGCTTCCCTTGCTTT+AGG - chr3_3:84277221-84277240 Msa0479320:CDS 40.0%
GAACTCTTCTCCTAAAGCAA+GGG + chr3_3:84277234-84277253 None:intergenic 40.0%
AGAACTCTTCTCCTAAAGCA+AGG + chr3_3:84277235-84277254 None:intergenic 40.0%
GAGAAGAGTTCTATTTGGGA+GGG - chr3_3:84277243-84277262 Msa0479320:intron 40.0%
AATGGCGATCATTCATCTGT+TGG + chr3_3:84277490-84277509 None:intergenic 40.0%
CAACTAGTAAGCTAGAGCTA+AGG - chr3_3:84277539-84277558 Msa0479320:intron 40.0%
AGTTCTCACCTAAGTCCTAA+AGG + chr3_3:84277581-84277600 None:intergenic 40.0%
TGCCACATTTGTGATGTTAC+AGG - chr3_3:84277939-84277958 Msa0479320:intron 40.0%
AAAGAAATTTGCAAGGGAGC+TGG - chr3_3:84278024-84278043 Msa0479320:CDS 40.0%
CGGAGCATAGTAACATAATC+AGG - chr3_3:84278065-84278084 Msa0479320:CDS 40.0%
CTGGGATAACATGTAGAATG+AGG - chr3_3:84278339-84278358 Msa0479320:five_prime_UTR 40.0%
!!! AAGGTTTTTAAGTGCGGTGG+AGG - chr3_3:84274097-84274116 Msa0479320:three_prime_UTR 45.0%
GTTGTCTTGTCAGCAAAGGA+GGG - chr3_3:84274119-84274138 Msa0479320:three_prime_UTR 45.0%
!! AAGAGGTGGTGGAAGAGTAA+GGG + chr3_3:84274273-84274292 None:intergenic 45.0%
! ACAGTAATGGCTGATTCAGG+TGG - chr3_3:84274380-84274399 Msa0479320:three_prime_UTR 45.0%
CTCAAGAGCTGCACTTAACA+TGG - chr3_3:84274499-84274518 Msa0479320:CDS 45.0%
AGAAGTAGGCAAAAGGAAGG+AGG + chr3_3:84274577-84274596 None:intergenic 45.0%
! TTCTTTTGTCTTGCCCTCGT+CGG - chr3_3:84274778-84274797 Msa0479320:intron 45.0%
AAGCAAGTAGAAACCCTGGT+TGG + chr3_3:84275170-84275189 None:intergenic 45.0%
AACCAGGGTTTCTACTTGCT+TGG - chr3_3:84275169-84275188 Msa0479320:intron 45.0%
GCCATGAGAAATGTAATGGC+TGG + chr3_3:84275244-84275263 None:intergenic 45.0%
! AAAGGTGCGGTTGAACAGAA+AGG - chr3_3:84275368-84275387 Msa0479320:CDS 45.0%
CTCAATCTCATCACTGGGAT+TGG - chr3_3:84275530-84275549 Msa0479320:intron 45.0%
GGACATTGTTTGTCATGGTC+TGG - chr3_3:84275600-84275619 Msa0479320:intron 45.0%
GATCCTTGAAAGAGATGCTC+AGG - chr3_3:84275728-84275747 Msa0479320:intron 45.0%
AAGCCTGAGCATCTCTTTCA+AGG + chr3_3:84275734-84275753 None:intergenic 45.0%
TTGAAAGAGATGCTCAGGCT+TGG - chr3_3:84275733-84275752 Msa0479320:intron 45.0%
GGCCTTTAGTGGTCTAAACT+TGG - chr3_3:84276105-84276124 Msa0479320:intron 45.0%
CCCCAAGTTTAGACCACTAA+AGG + chr3_3:84276110-84276129 None:intergenic 45.0%
! TTTTGAGCTAAGCGGGTGTT+TGG + chr3_3:84276583-84276602 None:intergenic 45.0%
! TTCGCTCGCCTTATGCTTTT+TGG - chr3_3:84276608-84276627 Msa0479320:intron 45.0%
GATACACCGCAACGAAAACT+GGG + chr3_3:84277175-84277194 None:intergenic 45.0%
TGATACACCGCAACGAAAAC+TGG + chr3_3:84277176-84277195 None:intergenic 45.0%
GCCACAACAAGAGTTTGAAC+AGG + chr3_3:84277200-84277219 None:intergenic 45.0%
GGAGAAGAGTTCTATTTGGG+AGG - chr3_3:84277242-84277261 Msa0479320:intron 45.0%
! AGCTAGAGCTAAGGCACTAT+TGG - chr3_3:84277548-84277567 Msa0479320:intron 45.0%
! GCTAGAGCTAAGGCACTATT+GGG - chr3_3:84277549-84277568 Msa0479320:intron 45.0%
! AGCTAAGGCACTATTGGGTT+GGG - chr3_3:84277554-84277573 Msa0479320:intron 45.0%
!! ACTATTGGGTTGGGACCTTT+AGG - chr3_3:84277563-84277582 Msa0479320:intron 45.0%
!! TGGAGCAGTGTTGATCATTG+TGG - chr3_3:84277967-84277986 Msa0479320:intron 45.0%
!! GGAGCAGTGTTGATCATTGT+GGG - chr3_3:84277968-84277987 Msa0479320:intron 45.0%
!! GAGCAGTGTTGATCATTGTG+GGG - chr3_3:84277969-84277988 Msa0479320:intron 45.0%
TGGGGTTATACCTAGTGTTG+TGG - chr3_3:84277987-84278006 Msa0479320:intron 45.0%
GGGGTTATACCTAGTGTTGT+GGG - chr3_3:84277988-84278007 Msa0479320:intron 45.0%
GGGTTATACCTAGTGTTGTG+GGG - chr3_3:84277989-84278008 Msa0479320:intron 45.0%
! CGTTTTTACCCCACAACACT+AGG + chr3_3:84278000-84278019 None:intergenic 45.0%
TATGTTACTATGCTCCGGAG+TGG + chr3_3:84278062-84278081 None:intergenic 45.0%
!!! TGTTTTGGCATGATGGCTTG+AGG + chr3_3:84278092-84278111 None:intergenic 45.0%
ACCTCTTCTCCCTTCATCAA+CGG - chr3_3:84278123-84278142 Msa0479320:CDS 45.0%
!! AATTAATTTAAATTTATCAA+AGG - chr3_3:84274078-84274097 Msa0479320:three_prime_UTR 5.0%
!! CTATATATATATAATTAATA+TGG - chr3_3:84275099-84275118 Msa0479320:intron 5.0%
!!! AAATATTTTATCTATTTTTT+TGG + chr3_3:84276325-84276344 None:intergenic 5.0%
GGAGGTTGTCTTGTCAGCAA+AGG - chr3_3:84274115-84274134 Msa0479320:three_prime_UTR 50.0%
GGTTGTCTTGTCAGCAAAGG+AGG - chr3_3:84274118-84274137 Msa0479320:three_prime_UTR 50.0%
!! GAAGAGGTGGTGGAAGAGTA+AGG + chr3_3:84274274-84274293 None:intergenic 50.0%
AGAGAGGAAGTGGTGTGAAG+AGG + chr3_3:84274290-84274309 None:intergenic 50.0%
! GGCTGATTCAGGTGGATCTT+CGG - chr3_3:84274388-84274407 Msa0479320:three_prime_UTR 50.0%
! GCTGATTCAGGTGGATCTTC+GGG - chr3_3:84274389-84274408 Msa0479320:three_prime_UTR 50.0%
CTGATTCAGGTGGATCTTCG+GGG - chr3_3:84274390-84274409 Msa0479320:three_prime_UTR 50.0%
TGTGGTGCTCCATACCAGAA+CGG - chr3_3:84274417-84274436 Msa0479320:three_prime_UTR 50.0%
CAGCTGAAACCGTTCTGGTA+TGG + chr3_3:84274429-84274448 None:intergenic 50.0%
AGAACGGTTTCAGCTGCATG+CGG - chr3_3:84274433-84274452 Msa0479320:three_prime_UTR 50.0%
CCCTGCATATCCAAACTGCA+GGG + chr3_3:84274468-84274487 None:intergenic 50.0%
CCCTGCAGTTTGGATATGCA+GGG - chr3_3:84274465-84274484 Msa0479320:CDS 50.0%
ACCCTGCATATCCAAACTGC+AGG + chr3_3:84274469-84274488 None:intergenic 50.0%
! TCTTTTGTCTTGCCCTCGTC+GGG - chr3_3:84274779-84274798 Msa0479320:intron 50.0%
ACACAGGATTACAGCCAACC+AGG - chr3_3:84275153-84275172 Msa0479320:intron 50.0%
CACAGGATTACAGCCAACCA+GGG - chr3_3:84275154-84275173 Msa0479320:intron 50.0%
AGCCAAGCAAGTAGAAACCC+TGG + chr3_3:84275174-84275193 None:intergenic 50.0%
GGGTTTCTACTTGCTTGGCT+TGG - chr3_3:84275174-84275193 Msa0479320:intron 50.0%
GTGCGGTTGAACAGAAAGGA+TGG - chr3_3:84275372-84275391 Msa0479320:CDS 50.0%
GATGGAATAGGAAAGGTGGC+AGG - chr3_3:84275390-84275409 Msa0479320:CDS 50.0%
! CTGCTGTTTAGAGGTGGAAC+TGG + chr3_3:84275480-84275499 None:intergenic 50.0%
CTGGGATTGGGAGATGCAAA+AGG - chr3_3:84275543-84275562 Msa0479320:intron 50.0%
TTTGTCATGGTCTGGTTGGC+TGG - chr3_3:84275608-84275627 Msa0479320:intron 50.0%
GCCGGATACTTCTTAAGGAC+AGG + chr3_3:84275645-84275664 None:intergenic 50.0%
! GAGCTAAGGCACTATTGGGT+TGG - chr3_3:84277553-84277572 Msa0479320:intron 50.0%
!! GGTTGGGACCTTTAGGACTT+AGG - chr3_3:84277570-84277589 Msa0479320:intron 50.0%
! TCCGTTGATGAAGGGAGAAG+AGG + chr3_3:84278127-84278146 None:intergenic 50.0%
CTTGTCAGCAAAGGAGGGTG+TGG - chr3_3:84274124-84274143 Msa0479320:three_prime_UTR 55.0%
GAAGTGGTGTGAAGAGGTGG+TGG + chr3_3:84274284-84274303 None:intergenic 55.0%
GAGGAAGTGGTGTGAAGAGG+TGG + chr3_3:84274287-84274306 None:intergenic 55.0%
GTGGATCTTCGGGGAGAATG+TGG - chr3_3:84274399-84274418 Msa0479320:three_prime_UTR 55.0%
GCATGCAGCTGAAACCGTTC+TGG + chr3_3:84274434-84274453 None:intergenic 55.0%
TCCAAACTGCAGGGCCAACA+TGG + chr3_3:84274459-84274478 None:intergenic 55.0%
GCCCTGCAGTTTGGATATGC+AGG - chr3_3:84274464-84274483 Msa0479320:CDS 55.0%
GTGCAGCTCTTGAGACGACA+TGG + chr3_3:84274493-84274512 None:intergenic 55.0%
GGCGAGCCGGATACTTCTTA+AGG + chr3_3:84275650-84275669 None:intergenic 55.0%
TTGCAGGGAGTAGTGGCATC+AGG - chr3_3:84277107-84277126 Msa0479320:CDS 55.0%
! AGGAGGCCCAGTTTTCGTTG+CGG - chr3_3:84277166-84277185 Msa0479320:CDS 55.0%
GGCAGCAATCACTTCCACTC+CGG - chr3_3:84278045-84278064 Msa0479320:CDS 55.0%
TCAGCTGCATGCGGCCATGT+TGG - chr3_3:84274442-84274461 Msa0479320:exon 60.0%
GCCATGTTGGCCCTGCAGTT+TGG - chr3_3:84274455-84274474 Msa0479320:exon 60.0%
GAAGTGACAGAGAGGCGAGC+CGG + chr3_3:84275663-84275682 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 84273996 84278619 84273996 ID=Msa0479320;Name=Msa0479320
chr3_3 mRNA 84273996 84278619 84273996 ID=Msa0479320-mRNA-1;Parent=Msa0479320;Name=Msa0479320-mRNA-1;_AED=0.07;_eAED=0.07;_QI=390|1|1|1|1|1|6|463|393
chr3_3 exon 84273996 84274654 84273996 ID=Msa0479320-mRNA-1:exon:23893;Parent=Msa0479320-mRNA-1
chr3_3 exon 84275351 84275502 84275351 ID=Msa0479320-mRNA-1:exon:23892;Parent=Msa0479320-mRNA-1
chr3_3 exon 84276818 84277253 84276818 ID=Msa0479320-mRNA-1:exon:23891;Parent=Msa0479320-mRNA-1
chr3_3 exon 84277340 84277456 84277340 ID=Msa0479320-mRNA-1:exon:23890;Parent=Msa0479320-mRNA-1
chr3_3 exon 84277815 84277877 84277815 ID=Msa0479320-mRNA-1:exon:23889;Parent=Msa0479320-mRNA-1
chr3_3 exon 84278012 84278619 84278012 ID=Msa0479320-mRNA-1:exon:23888;Parent=Msa0479320-mRNA-1
chr3_3 five_prime_UTR 84278230 84278619 84278230 ID=Msa0479320-mRNA-1:five_prime_utr;Parent=Msa0479320-mRNA-1
chr3_3 CDS 84278012 84278229 84278012 ID=Msa0479320-mRNA-1:cds;Parent=Msa0479320-mRNA-1
chr3_3 CDS 84277815 84277877 84277815 ID=Msa0479320-mRNA-1:cds;Parent=Msa0479320-mRNA-1
chr3_3 CDS 84277340 84277456 84277340 ID=Msa0479320-mRNA-1:cds;Parent=Msa0479320-mRNA-1
chr3_3 CDS 84276818 84277253 84276818 ID=Msa0479320-mRNA-1:cds;Parent=Msa0479320-mRNA-1
chr3_3 CDS 84275351 84275502 84275351 ID=Msa0479320-mRNA-1:cds;Parent=Msa0479320-mRNA-1
chr3_3 CDS 84274459 84274654 84274459 ID=Msa0479320-mRNA-1:cds;Parent=Msa0479320-mRNA-1
chr3_3 three_prime_UTR 84273996 84274458 84273996 ID=Msa0479320-mRNA-1:three_prime_utr;Parent=Msa0479320-mRNA-1
Gene Sequence

>Msa0479320

ATGGCTGATTCAGGTGGATCTTCGGGGAGAATGTGGTGCTCCATACCAGAACGGTTTCAGCTGCATGCGGCCATGTTGGCCCTGCAGTTTGGATATGCAGGGTTCCATGTCGTCTCAAGAGCTGCACTTAACATGGGTGTTAGCAAACTTGTTTTCCCAGTTTACCGCAATATTATTGCCTTTCTTCTCCTCCTTCCTTTTGCCTACTTCTTAGAAAAGAAGGAGAGGCCAGCTATTACTTTCAACTTTCTCTTGCAGTTCTTTTGTCTTGCCCTCGTCGGGATTACAGCCAACCAGGGTTTCTACTTGCTTGGCTTGGACAACACATCTCCAACCTTTGCATCAGCTATACAGAATTCTGTACCAGCCATTACATTTCTCATGGCAGTTATACTCAGAATAGAAAAGGTGCGGTTGAACAGAAAGGATGGAATAGGAAAGGTGGCAGGAACATTGTTTTGTGTTGCAGGAGCATCAGTGATTACACTATACAAAGGTCCAACAATATACAGTCCAGTTCCACCTCTAAACAGCAGCATTAATGGTGGCAGTGAGTCAATCTCAATCTCAATCTCATCACTGGGATTGGGAGATGCAAAAGGAAAAAACTGGACCCTTGGATGTTTGTACCTTATAGGACATTGTTTGTCATGGTCTGGTTGGCTGGTGTTGCAAGCACCTGTCCTTAAGAAGTATCCGGCTCGCCTCTCTGTCACTTCCTATACATGTTTCTTTGGACTTATCCAATTTCTCATTATTGCTTTGATCCTTGAAAGAGATGCTCAGGCTTGGATTTTTCAATCTGGTGGAGAAGTTTTTACTATTTTGTACGCGGGAGTAGTGGCATCAGGAATTGCATTCGCTGTACAGATATGGTGCATTGATAGAGGAGGCCCAGTTTTCGTTGCGGTGTATCAACCTGTTCAAACTCTTGTTGTGGCTATTATGGCTTCCCTTGCTTTAGGAGAAGAGTTCTATTTGGGAGGGATCATTGGAGCAGTGTTGATCATTGTGGGGTTATACCTAGTGTTGTGGGGTAAAAACGAAGAAAAGAAATTTGCAAGGGAGCTGGCAGCAATCACTTCCACTCCGGAGCATAGTAACATAATCAGGTCCTCAAGCCATCATGCCAAAACATCACTTTCTCAACCTCTTCTCCCTTCATCAACGGAAAATGTTTGA
Protein sequence

>Msa0479320

MADSGGSSGRMWCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIAFLLLLPFAYFLEKKERPAITFNFLLQFFCLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAVILRIEKVRLNRKDGIGKVAGTLFCVAGASVITLYKGPTIYSPVPPLNSSINGGSESISISISSLGLGDAKGKNWTLGCLYLIGHCLSWSGWLVLQAPVLKKYPARLSVTSYTCFFGLIQFLIIALILERDAQAWIFQSGGEVFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASLALGEEFYLGGIIGAVLIIVGLYLVLWGKNEEKKFARELAAITSTPEHSNIIRSSSHHAKTSLSQPLLPSSTENV*