Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099980 | GAU23323.1 | 62.500 | 152 | 12 | 4 | 23 | 129 | 10 | 161 | 6.95e-45 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099980 | sp|Q9ZPC0|ICS_CATRO | 37.853 | 177 | 40 | 3 | 23 | 129 | 330 | 506 | 1.47e-21 | 92.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099980 | A0A2Z6M040 | 62.500 | 152 | 12 | 4 | 23 | 129 | 10 | 161 | 3.32e-45 | 154 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0701010 | Msa1099980 | 0.807847 | 4.137480e-50 | -8.615850e-47 |
| Msa0768290 | Msa1099980 | 0.858482 | 7.993044e-63 | -8.615850e-47 |
| Msa0768370 | Msa1099980 | 0.836126 | 1.123309e-56 | -8.615850e-47 |
| Msa0150840 | Msa1099980 | 0.801015 | 1.098961e-48 | -8.615850e-47 |
| Msa1099980 | Msa1121490 | 0.810423 | 1.161297e-50 | -8.615850e-47 |
| Msa1099980 | Msa1366810 | 0.811030 | 8.583705e-51 | -8.615850e-47 |
| Msa0844490 | Msa1099980 | 0.825343 | 4.936035e-54 | -8.615850e-47 |
| Msa0877250 | Msa1099980 | 0.831964 | 1.238262e-55 | -8.615850e-47 |
| Msa0899430 | Msa1099980 | 0.812011 | 5.254082e-51 | -8.615850e-47 |
| Msa0899450 | Msa1099980 | 0.827624 | 1.411331e-54 | -8.615850e-47 |
| Msa0927380 | Msa1099980 | 0.814205 | 1.734158e-51 | -8.615850e-47 |
| Msa0936300 | Msa1099980 | 0.803952 | 2.726998e-49 | -8.615850e-47 |
| Msa0948320 | Msa1099980 | 0.803412 | 3.530309e-49 | -8.615850e-47 |
| Msa0958550 | Msa1099980 | 0.818002 | 2.459557e-52 | -8.615850e-47 |
| Msa0964900 | Msa1099980 | 0.814602 | 1.416840e-51 | -8.615850e-47 |
| Msa0974080 | Msa1099980 | 0.805522 | 1.282090e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099980 | MtrunA17_Chr4g0039031 | 50.282 | 177 | 18 | 3 | 23 | 129 | 312 | 488 | 3.71e-39 | 138 |
| Msa1099980 | MtrunA17_Chr7g0217861 | 88.095 | 42 | 5 | 0 | 88 | 129 | 15 | 56 | 1.12e-18 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099980 | AT1G18870.3 | 41.176 | 153 | 44 | 3 | 23 | 129 | 310 | 462 | 1.55e-24 | 97.8 |
| Msa1099980 | AT1G74710.2 | 35.028 | 177 | 45 | 3 | 23 | 129 | 315 | 491 | 1.09e-21 | 90.1 |
| Msa1099980 | AT1G74710.1 | 35.028 | 177 | 45 | 3 | 23 | 129 | 315 | 491 | 1.16e-21 | 89.7 |
| Msa1099980 | AT1G18870.1 | 35.028 | 177 | 45 | 3 | 23 | 129 | 310 | 486 | 1.16e-20 | 87.0 |
| Msa1099980 | AT1G18870.2 | 35.028 | 177 | 45 | 3 | 23 | 129 | 260 | 436 | 1.48e-20 | 86.7 |
Find 29 sgRNAs with CRISPR-Local
Find 405 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAATGCACCAGCATTTAT+TGG | 0.140518 | 7_3:-29292234 | Msa1099980:CDS |
| CCAATAAATGCTGGTGCATT+AGG | 0.311387 | 7_3:+29292234 | None:intergenic |
| CACCCAAGTCCCGCAGTTTG+TGG | 0.369172 | 7_3:-29286340 | Msa1099980:CDS |
| GCAGGTCAAGTTCAATTTGA+TGG | 0.396106 | 7_3:+29291965 | None:intergenic |
| AACAACCTGAGTTTCCAATA+TGG | 0.416153 | 7_3:+29292323 | None:intergenic |
| AATCCACAAACTGCGGGACT+TGG | 0.418599 | 7_3:+29286337 | None:intergenic |
| GCTTTGGCCGCAACCCGTGC+TGG | 0.451761 | 7_3:-29292009 | Msa1099980:CDS |
| ACATATCACTAGTGATGCTT+TGG | 0.454991 | 7_3:-29292025 | Msa1099980:CDS |
| TTGAACTTGACCTGCTTACC+AGG | 0.455178 | 7_3:-29291957 | Msa1099980:intron |
| CACTCCTCCAGCACGGGTTG+CGG | 0.465835 | 7_3:+29292002 | None:intergenic |
| TTCTTCCATATTGGAAACTC+AGG | 0.470347 | 7_3:-29292328 | Msa1099980:CDS |
| AAAAGTTGTGCCTCTTCTGT+TGG | 0.474937 | 7_3:+29286313 | None:intergenic |
| GTTAAGAAGTGATGAGGATG+AGG | 0.481861 | 7_3:-29286509 | Msa1099980:intron |
| ATCCACAAACTGCGGGACTT+GGG | 0.506816 | 7_3:+29286338 | None:intergenic |
| ACAAGGTAAACCTGGTAAGC+AGG | 0.510358 | 7_3:+29291947 | None:intergenic |
| AAGCATCACTAGTGATATGT+AGG | 0.527000 | 7_3:+29292028 | None:intergenic |
| AAATGATTTCTTGCAACACA+AGG | 0.537863 | 7_3:+29292366 | None:intergenic |
| GTTGGAAATCCACAAACTGC+GGG | 0.537949 | 7_3:+29286331 | None:intergenic |
| AAACTCAGGTTGTTCTAGCA+TGG | 0.545109 | 7_3:-29292314 | Msa1099980:CDS |
| TAGTGACACTCCTCCAGCAC+GGG | 0.560918 | 7_3:+29291996 | None:intergenic |
| TTGGCCGCAACCCGTGCTGG+AGG | 0.561426 | 7_3:-29292006 | Msa1099980:CDS |
| TTGTGGATTTCCAACAGAAG+AGG | 0.577512 | 7_3:-29286323 | Msa1099980:CDS |
| ACTGTGTTTCCAATAAATGC+TGG | 0.591200 | 7_3:+29292225 | None:intergenic |
| CTGGTGCATTAGGCGGCTGA+AGG | 0.594130 | 7_3:+29292244 | None:intergenic |
| ATAAATGCTGGTGCATTAGG+CGG | 0.626646 | 7_3:+29292237 | None:intergenic |
| TGGCAGGTTAAGAAGTGATG+AGG | 0.637555 | 7_3:-29286515 | Msa1099980:intron |
| CTAGTGACACTCCTCCAGCA+CGG | 0.638630 | 7_3:+29291995 | None:intergenic |
| TAAGGATCGATAATAGCAGT+AGG | 0.639490 | 7_3:+29292276 | None:intergenic |
| TGTTGGAAATCCACAAACTG+CGG | 0.645453 | 7_3:+29286330 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGTATTAAAAATCTAG+GGG | + | chr7_3:29287906-29287925 | None:intergenic | 15.0% |
| !!! | CATTTTGTATTAAAAATCTA+GGG | + | chr7_3:29287907-29287926 | None:intergenic | 15.0% |
| !!! | ACATTTTGTATTAAAAATCT+AGG | + | chr7_3:29287908-29287927 | None:intergenic | 15.0% |
| !!! | ATTACTTCATTTTGATATTT+GGG | + | chr7_3:29289571-29289590 | None:intergenic | 15.0% |
| !!! | AATTTTTTTTTGAAATTTGG+AGG | + | chr7_3:29292004-29292023 | None:intergenic | 15.0% |
| !!! | TCGAATTTTTTTTTGAAATT+TGG | + | chr7_3:29292007-29292026 | None:intergenic | 15.0% |
| !!! | ATTTAAACACTGTTGTTTAA+TGG | - | chr7_3:29286735-29286754 | Msa1099980:intron | 20.0% |
| !!! | AAATGTCAAATTTTTTGACA+TGG | + | chr7_3:29288926-29288945 | None:intergenic | 20.0% |
| !! | TATAAGTATTAACATCAACA+AGG | - | chr7_3:29288962-29288981 | Msa1099980:intron | 20.0% |
| !! | AAATCTTTCAACAAAAATTC+AGG | - | chr7_3:29289357-29289376 | Msa1099980:intron | 20.0% |
| !! | CAAATACTTTCTTACAATAT+TGG | + | chr7_3:29289517-29289536 | None:intergenic | 20.0% |
| !!! | TTACTTCATTTTGATATTTG+GGG | + | chr7_3:29289570-29289589 | None:intergenic | 20.0% |
| !!! | CATTACTTCATTTTGATATT+TGG | + | chr7_3:29289572-29289591 | None:intergenic | 20.0% |
| !! | ATTAGTGTTAATTTACCTAA+TGG | + | chr7_3:29290080-29290099 | None:intergenic | 20.0% |
| !! | TTAGGTAAATTAACACTAAT+AGG | - | chr7_3:29290080-29290099 | Msa1099980:intron | 20.0% |
| !!! | ATACTTGTTTTGATATGAAA+TGG | + | chr7_3:29290130-29290149 | None:intergenic | 20.0% |
| !!! | TTTTCTTATTGTTTTCTGTT+TGG | - | chr7_3:29291824-29291843 | Msa1099980:intron | 20.0% |
| !! | ATGGTGTGAAAATTTAATAA+AGG | + | chr7_3:29292229-29292248 | None:intergenic | 20.0% |
| ! | ATTAAGCGAAATTCATTTCA+TGG | + | chr7_3:29286489-29286508 | None:intergenic | 25.0% |
| !!! | ATGATTTTGTTTACCTCAAA+AGG | - | chr7_3:29286559-29286578 | Msa1099980:intron | 25.0% |
| ! | TCAAAATAGAGTTTCAAGAA+AGG | + | chr7_3:29286592-29286611 | None:intergenic | 25.0% |
| !!! | CTTGAAACTCTATTTTGAAA+AGG | - | chr7_3:29286594-29286613 | Msa1099980:intron | 25.0% |
| ! | ATTACATATTTCAGCTAATC+CGG | + | chr7_3:29287243-29287262 | None:intergenic | 25.0% |
| !!! | CAGGCTATTGTTTTTTTATT+GGG | + | chr7_3:29287445-29287464 | None:intergenic | 25.0% |
| !!! | TCAGGCTATTGTTTTTTTAT+TGG | + | chr7_3:29287446-29287465 | None:intergenic | 25.0% |
| ! | ATACTGATATAACTGGTTAT+AGG | + | chr7_3:29287712-29287731 | None:intergenic | 25.0% |
| !!! | TAAGTTCTTTTTAGGTTTAG+AGG | + | chr7_3:29287879-29287898 | None:intergenic | 25.0% |
| ! | ATATATGGATGATATCATCT+TGG | + | chr7_3:29287981-29288000 | None:intergenic | 25.0% |
| ! | ACATAATCTTGCAAATAAGA+TGG | - | chr7_3:29288682-29288701 | Msa1099980:intron | 25.0% |
| ! | CATAATCTTGCAAATAAGAT+GGG | - | chr7_3:29288683-29288702 | Msa1099980:intron | 25.0% |
| ! | ATAATCTTGCAAATAAGATG+GGG | - | chr7_3:29288684-29288703 | Msa1099980:intron | 25.0% |
| ! | GTCAAAAAATTTGACATTTC+TGG | - | chr7_3:29288927-29288946 | Msa1099980:intron | 25.0% |
| ! | TTAAGCATCCAAAAACTTTA+AGG | - | chr7_3:29289082-29289101 | Msa1099980:intron | 25.0% |
| !! | CTTAGTAACCTTAAAGTTTT+TGG | + | chr7_3:29289093-29289112 | None:intergenic | 25.0% |
| !!! | CAAAAACTTTAAGGTTACTA+AGG | - | chr7_3:29289091-29289110 | Msa1099980:intron | 25.0% |
| ! | TTATTGTTCAGAATTCTAGT+AGG | - | chr7_3:29289150-29289169 | Msa1099980:intron | 25.0% |
| ! | TATTGTTCAGAATTCTAGTA+GGG | - | chr7_3:29289151-29289170 | Msa1099980:intron | 25.0% |
| !! | CAAAATTGCCTAAGAAATTT+TGG | + | chr7_3:29289218-29289237 | None:intergenic | 25.0% |
| !! | AAAGATTTTTATGCTGAGAA+AGG | + | chr7_3:29289345-29289364 | None:intergenic | 25.0% |
| ! | AAATCATTAGGAGTGATAAT+GGG | + | chr7_3:29289383-29289402 | None:intergenic | 25.0% |
| ! | AAAATCATTAGGAGTGATAA+TGG | + | chr7_3:29289384-29289403 | None:intergenic | 25.0% |
| ! | AGTGTAAAGTGAAAATCATT+AGG | + | chr7_3:29289395-29289414 | None:intergenic | 25.0% |
| ! | TGTGAAAAGTTTCATTTCAA+TGG | + | chr7_3:29289433-29289452 | None:intergenic | 25.0% |
| ! | TCAAAATGAAGTAATGCAAA+AGG | - | chr7_3:29289576-29289595 | Msa1099980:intron | 25.0% |
| !! | TAATTGCATTTTGCAATTTG+AGG | + | chr7_3:29289931-29289950 | None:intergenic | 25.0% |
| ! | TCATATCAAAACAAGTATGA+TGG | - | chr7_3:29290132-29290151 | Msa1099980:intron | 25.0% |
| ! | CATATCAAAACAAGTATGAT+GGG | - | chr7_3:29290133-29290152 | Msa1099980:intron | 25.0% |
| ! | TCTATTGGAAAAGAGTAATT+TGG | + | chr7_3:29290285-29290304 | None:intergenic | 25.0% |
| ! | AGGAAATTCTTATGCAAATA+TGG | + | chr7_3:29290414-29290433 | None:intergenic | 25.0% |
| !! | AATAAACAGAGTCTTTTCTA+TGG | + | chr7_3:29290684-29290703 | None:intergenic | 25.0% |
| ! | ATAGAAAAGACTCTGTTTAT+TGG | - | chr7_3:29290683-29290702 | Msa1099980:intron | 25.0% |
| !! | AAATTGCTAATTTGAAGCAA+GGG | + | chr7_3:29290934-29290953 | None:intergenic | 25.0% |
| !!! | CTCAATTTTTTGTTGAATCA+TGG | + | chr7_3:29291334-29291353 | None:intergenic | 25.0% |
| !!! | TATTGTTTTCTGTTTGGTTT+TGG | - | chr7_3:29291830-29291849 | Msa1099980:intron | 25.0% |
| ! | CGTGGATTTATAAATGTATT+GGG | + | chr7_3:29291973-29291992 | None:intergenic | 25.0% |
| ! | TCGTGGATTTATAAATGTAT+TGG | + | chr7_3:29291974-29291993 | None:intergenic | 25.0% |
| !! | CATTTATAAATCCACGATTT+TGG | - | chr7_3:29291977-29291996 | Msa1099980:CDS | 25.0% |
| ! | TTCAAAAAAAAATTCGACCT+TGG | - | chr7_3:29292010-29292029 | Msa1099980:CDS | 25.0% |
| ! | TTAGTTGAGCAAATAAATGT+TGG | + | chr7_3:29292109-29292128 | None:intergenic | 25.0% |
| ! | AACCATGATACAATTTAAGT+TGG | - | chr7_3:29292160-29292179 | Msa1099980:intron | 25.0% |
| ! | TTCCAACTTAAATTGTATCA+TGG | + | chr7_3:29292165-29292184 | None:intergenic | 25.0% |
| !! | ATTTTCACACCATATAACTA+AGG | - | chr7_3:29292236-29292255 | Msa1099980:CDS | 25.0% |
| ! | AATTTGACACCTTAGTTATA+TGG | + | chr7_3:29292248-29292267 | None:intergenic | 25.0% |
| AAATGATTTCTTGCAACACA+AGG | + | chr7_3:29286282-29286301 | None:intergenic | 30.0% | |
| ! | CTCATTTTCTTCTTCCATAT+TGG | - | chr7_3:29286308-29286327 | Msa1099980:CDS | 30.0% |
| !! | ATTTTGTTTACCTCAAAAGG+TGG | - | chr7_3:29286562-29286581 | Msa1099980:intron | 30.0% |
| GTGGTGAAAAAGTTCAAAAA+AGG | - | chr7_3:29286804-29286823 | Msa1099980:intron | 30.0% | |
| ! | ACTGTTTCATTGATTGTGAA+AGG | - | chr7_3:29286841-29286860 | Msa1099980:intron | 30.0% |
| ATGAATGTATGCTCAAACTA+GGG | + | chr7_3:29287073-29287092 | None:intergenic | 30.0% | |
| ATACATTCATGAAACTGTCT+AGG | - | chr7_3:29287083-29287102 | Msa1099980:intron | 30.0% | |
| TACGAGAGAAAATTCAAGAT+GGG | + | chr7_3:29287175-29287194 | None:intergenic | 30.0% | |
| TTTGGATATAGATTGCCATT+TGG | + | chr7_3:29287198-29287217 | None:intergenic | 30.0% | |
| GCAATCTATATCCAAATGTT+TGG | - | chr7_3:29287202-29287221 | Msa1099980:intron | 30.0% | |
| TGTTGTATCTTACAACTACA+CGG | + | chr7_3:29287673-29287692 | None:intergenic | 30.0% | |
| TAACCAGTTATATCAGTATG+AGG | - | chr7_3:29287713-29287732 | Msa1099980:intron | 30.0% | |
| AGAGTTTGATTCATTGAAAC+AGG | + | chr7_3:29287942-29287961 | None:intergenic | 30.0% | |
| TCAATGAATCAAACTCTTTG+AGG | - | chr7_3:29287945-29287964 | Msa1099980:intron | 30.0% | |
| CACTGTGATCTTAGTATATA+TGG | + | chr7_3:29287996-29288015 | None:intergenic | 30.0% | |
| ATATACTAAGATCACAGTGT+AGG | - | chr7_3:29287997-29288016 | Msa1099980:intron | 30.0% | |
| ATGTAAATACCATCCATGAA+TGG | - | chr7_3:29288258-29288277 | Msa1099980:intron | 30.0% | |
| !!! | ATGGTTGATAATTTTGCAAC+AGG | - | chr7_3:29288304-29288323 | Msa1099980:intron | 30.0% |
| AGTATTCAAAGAGTTTGCAT+AGG | - | chr7_3:29288585-29288604 | Msa1099980:intron | 30.0% | |
| TATGTTTGCAACTCAATAGA+TGG | + | chr7_3:29288667-29288686 | None:intergenic | 30.0% | |
| GATGATTTAGAAGTTTCACA+GGG | + | chr7_3:29288790-29288809 | None:intergenic | 30.0% | |
| AGATGATTTAGAAGTTTCAC+AGG | + | chr7_3:29288791-29288810 | None:intergenic | 30.0% | |
| CTACAGAAATTTACCTTGAT+AGG | + | chr7_3:29288864-29288883 | None:intergenic | 30.0% | |
| TCAAGGTAAATTTCTGTAGA+TGG | - | chr7_3:29288865-29288884 | Msa1099980:intron | 30.0% | |
| ! | AGTCTTGTACAATGAAATAC+CGG | + | chr7_3:29289118-29289137 | None:intergenic | 30.0% |
| TTCATTGTACAAGACTTCAT+AGG | - | chr7_3:29289122-29289141 | Msa1099980:intron | 30.0% | |
| GCATAAGACCAAAATTTCTT+AGG | - | chr7_3:29289207-29289226 | Msa1099980:intron | 30.0% | |
| ACATATACTCAATGTCAGTA+GGG | + | chr7_3:29289256-29289275 | None:intergenic | 30.0% | |
| AACATATACTCAATGTCAGT+AGG | + | chr7_3:29289257-29289276 | None:intergenic | 30.0% | |
| AGAAAGGAATTATACATCAG+AGG | + | chr7_3:29289329-29289348 | None:intergenic | 30.0% | |
| GTTTCATTTCAATGGTTGAA+AGG | + | chr7_3:29289425-29289444 | None:intergenic | 30.0% | |
| ATGACTGTACAAGACATATT+TGG | + | chr7_3:29289494-29289513 | None:intergenic | 30.0% | |
| TTAGCATTCTTATCACTAAC+AGG | - | chr7_3:29289603-29289622 | Msa1099980:intron | 30.0% | |
| ATTCTTATCACTAACAGGAA+AGG | - | chr7_3:29289608-29289627 | Msa1099980:intron | 30.0% | |
| TTCTTATCACTAACAGGAAA+GGG | - | chr7_3:29289609-29289628 | Msa1099980:intron | 30.0% | |
| ATAAGTGTACTATACAGGAA+AGG | + | chr7_3:29289905-29289924 | None:intergenic | 30.0% | |
| ATTAGATTCACAGCAAATTG+AGG | - | chr7_3:29289978-29289997 | Msa1099980:intron | 30.0% | |
| GATAATAAGCATGATGATAC+TGG | + | chr7_3:29290182-29290201 | None:intergenic | 30.0% | |
| TTCAGGTATCAATCTTACAA+AGG | + | chr7_3:29290330-29290349 | None:intergenic | 30.0% | |
| TCTTATGCAAATATGGTAGA+TGG | + | chr7_3:29290407-29290426 | None:intergenic | 30.0% | |
| CAGGAAAGAAAACTACAATA+TGG | + | chr7_3:29290653-29290672 | None:intergenic | 30.0% | |
| AGAACTATACAGTTCTTGAT+TGG | + | chr7_3:29290767-29290786 | None:intergenic | 30.0% | |
| AGATTACTTCACTGAAATGA+GGG | + | chr7_3:29290897-29290916 | None:intergenic | 30.0% | |
| ! | GAAATTGCTAATTTGAAGCA+AGG | + | chr7_3:29290935-29290954 | None:intergenic | 30.0% |
| TAGAAAATGCAATAGACATG+TGG | + | chr7_3:29291018-29291037 | None:intergenic | 30.0% | |
| AATTCCTAATGAAGATGATC+TGG | + | chr7_3:29291131-29291150 | None:intergenic | 30.0% | |
| AGATCATCTTCATTAGGAAT+TGG | - | chr7_3:29291130-29291149 | Msa1099980:intron | 30.0% | |
| TAATTGTCACCATTTAACTG+CGG | - | chr7_3:29291225-29291244 | Msa1099980:intron | 30.0% | |
| TGGTGAAAAAGCTTCAAAAA+AGG | - | chr7_3:29291585-29291604 | Msa1099980:intron | 30.0% | |
| ! | ACTGTTTCATTGATTGTGAA+AGG | - | chr7_3:29286841-29286860 | Msa1099980:intron | 30.0% |
| AATCACAAGCTATTAACACA+TGG | + | chr7_3:29291804-29291823 | None:intergenic | 30.0% | |
| GACCATAAGAAGAAAATTAG+AGG | - | chr7_3:29291897-29291916 | Msa1099980:intron | 30.0% | |
| ! | TGCCTCTAATTTTCTTCTTA+TGG | + | chr7_3:29291902-29291921 | None:intergenic | 30.0% |
| ! | TACAATCGATTCAACGAAAA+TGG | - | chr7_3:29292064-29292083 | Msa1099980:intron | 30.0% |
| CATTTATTTGCTCAACTAAC+TGG | - | chr7_3:29292110-29292129 | Msa1099980:intron | 30.0% | |
| !! | CAACTTTTAATTGCAGAAAC+AGG | - | chr7_3:29292347-29292366 | Msa1099980:CDS | 30.0% |
| TTCTTCCATATTGGAAACTC+AGG | - | chr7_3:29286317-29286336 | Msa1099980:CDS | 35.0% | |
| AACAACCTGAGTTTCCAATA+TGG | + | chr7_3:29286325-29286344 | None:intergenic | 35.0% | |
| TAAGGATCGATAATAGCAGT+AGG | + | chr7_3:29286372-29286391 | None:intergenic | 35.0% | |
| ACTGTGTTTCCAATAAATGC+TGG | + | chr7_3:29286423-29286442 | None:intergenic | 35.0% | |
| AAGCATCACTAGTGATATGT+AGG | + | chr7_3:29286620-29286639 | None:intergenic | 35.0% | |
| ACATATCACTAGTGATGCTT+TGG | - | chr7_3:29286620-29286639 | Msa1099980:intron | 35.0% | |
| AATCAAAGCCTTAAGCAACA+AGG | + | chr7_3:29286718-29286737 | None:intergenic | 35.0% | |
| !!! | AACTTTTTCACCACCTTCAA+TGG | + | chr7_3:29286798-29286817 | None:intergenic | 35.0% |
| TAGTTAGAGTTATCATGAGC+TGG | + | chr7_3:29286898-29286917 | None:intergenic | 35.0% | |
| TAACGTAGAGGAAGATAACT+TGG | + | chr7_3:29286994-29287013 | None:intergenic | 35.0% | |
| ACATGGAGAAAATAACGTAG+AGG | + | chr7_3:29287006-29287025 | None:intergenic | 35.0% | |
| CATGAATGTATGCTCAAACT+AGG | + | chr7_3:29287074-29287093 | None:intergenic | 35.0% | |
| ACGAGAGAAAATTCAAGATG+GGG | + | chr7_3:29287174-29287193 | None:intergenic | 35.0% | |
| GTACGAGAGAAAATTCAAGA+TGG | + | chr7_3:29287176-29287195 | None:intergenic | 35.0% | |
| ! | GAATTTTCTCTCGTACCAAA+TGG | - | chr7_3:29287180-29287199 | Msa1099980:intron | 35.0% |
| TGATTGTCACAATAGAGTAC+AGG | - | chr7_3:29287269-29287288 | Msa1099980:intron | 35.0% | |
| !!! | TTTTTTTATTGGGCACTCTC+TGG | + | chr7_3:29287435-29287454 | None:intergenic | 35.0% |
| AGTTGAAGTTCAGATGAATG+AGG | - | chr7_3:29287521-29287540 | Msa1099980:intron | 35.0% | |
| GCTCTATAATGCAATTCAGT+AGG | - | chr7_3:29287599-29287618 | Msa1099980:intron | 35.0% | |
| ATAATGCAATTCAGTAGGAG+AGG | - | chr7_3:29287604-29287623 | Msa1099980:intron | 35.0% | |
| TCAACAACTAAGCCAATTCA+TGG | + | chr7_3:29287630-29287649 | None:intergenic | 35.0% | |
| TCTCCTCATACTGATATAAC+TGG | + | chr7_3:29287719-29287738 | None:intergenic | 35.0% | |
| TCTATTCGTTTGTCTCAAGA+TGG | + | chr7_3:29287746-29287765 | None:intergenic | 35.0% | |
| TCTTGAGACAAACGAATAGA+AGG | - | chr7_3:29287746-29287765 | Msa1099980:intron | 35.0% | |
| CTTGAGACAAACGAATAGAA+GGG | - | chr7_3:29287747-29287766 | Msa1099980:intron | 35.0% | |
| ! | GGGGAACTTAAGTTCTTTTT+AGG | + | chr7_3:29287887-29287906 | None:intergenic | 35.0% |
| !!! | ACACATTTTTTGCATGCTCA+GGG | + | chr7_3:29288076-29288095 | None:intergenic | 35.0% |
| !!! | TACACATTTTTTGCATGCTC+AGG | + | chr7_3:29288077-29288096 | None:intergenic | 35.0% |
| AAGCTCTTGAAATCACTCTA+TGG | + | chr7_3:29288136-29288155 | None:intergenic | 35.0% | |
| ATTTCAAGAGCTTGCAAACT+TGG | - | chr7_3:29288143-29288162 | Msa1099980:intron | 35.0% | |
| GTAAATAACGCATTCCTTCA+TGG | + | chr7_3:29288229-29288248 | None:intergenic | 35.0% | |
| TAAATACCATCCATGAATGG+AGG | - | chr7_3:29288261-29288280 | Msa1099980:intron | 35.0% | |
| AGTGGGTGTATAAAATCAAG+AGG | + | chr7_3:29288423-29288442 | None:intergenic | 35.0% | |
| CAAACCTATAGGTAGTAAGT+GGG | + | chr7_3:29288440-29288459 | None:intergenic | 35.0% | |
| ACTCAATGTTAACCACACTT+GGG | + | chr7_3:29288488-29288507 | None:intergenic | 35.0% | |
| TTTCAGCCAGTAAAGATTCT+AGG | + | chr7_3:29288543-29288562 | None:intergenic | 35.0% | |
| ! | TTTACTGGCTGAAAGAAAAC+TGG | - | chr7_3:29288549-29288568 | Msa1099980:intron | 35.0% |
| TTTGCATAGGCTAAATGCTT+AGG | - | chr7_3:29288598-29288617 | Msa1099980:intron | 35.0% | |
| GATGACTTTCTGATAGAAAC+TGG | - | chr7_3:29288721-29288740 | Msa1099980:intron | 35.0% | |
| ATTCCTTTCTTCTGTATCAC+TGG | - | chr7_3:29288756-29288775 | Msa1099980:intron | 35.0% | |
| ATCATGCCTGTGAGTAATAT+AGG | + | chr7_3:29288829-29288848 | None:intergenic | 35.0% | |
| ATATTACTCACAGGCATGAT+AGG | - | chr7_3:29288829-29288848 | Msa1099980:intron | 35.0% | |
| GTGATACTAGAGGAATGAAA+AGG | - | chr7_3:29288895-29288914 | Msa1099980:intron | 35.0% | |
| CAGACATAAGTTTGACTCAA+GGG | + | chr7_3:29289037-29289056 | None:intergenic | 35.0% | |
| ACAGACATAAGTTTGACTCA+AGG | + | chr7_3:29289038-29289057 | None:intergenic | 35.0% | |
| TCAAACTTATGTCTGTTGAC+TGG | - | chr7_3:29289042-29289061 | Msa1099980:intron | 35.0% | |
| !! | ACTTTAAGGTTACTAAGGTC+CGG | - | chr7_3:29289096-29289115 | Msa1099980:intron | 35.0% |
| ATTGTACAAGACTTCATAGG+AGG | - | chr7_3:29289125-29289144 | Msa1099980:intron | 35.0% | |
| ATGCTGTATACCTGATTAAC+AGG | + | chr7_3:29289179-29289198 | None:intergenic | 35.0% | |
| TTTGATATTTGGGGACCATT+TGG | + | chr7_3:29289561-29289580 | None:intergenic | 35.0% | |
| CATGCATATCATTCTATCCT+TGG | - | chr7_3:29289710-29289729 | Msa1099980:intron | 35.0% | |
| GGTTTAGCTGAAGAAAGAAA+TGG | + | chr7_3:29289864-29289883 | None:intergenic | 35.0% | |
| AGGACAAATAAGATTGACAC+AGG | + | chr7_3:29290033-29290052 | None:intergenic | 35.0% | |
| ATAAGCATGATGATACTGGA+TGG | + | chr7_3:29290178-29290197 | None:intergenic | 35.0% | |
| ATCAATCTCTACTCATCTAG+TGG | + | chr7_3:29290230-29290249 | None:intergenic | 35.0% | |
| TGTTCAGCAAATGTGGTAAA+AGG | + | chr7_3:29290254-29290273 | None:intergenic | 35.0% | |
| TCAGAACTTGATGTCTCTAT+TGG | + | chr7_3:29290300-29290319 | None:intergenic | 35.0% | |
| AGCAGAAATGAAGAAAGTTC+AGG | + | chr7_3:29290347-29290366 | None:intergenic | 35.0% | |
| ATAGCCATGCTTCTTATAAC+AGG | - | chr7_3:29290457-29290476 | Msa1099980:intron | 35.0% | |
| GAAACCTGTTATAAGAAGCA+TGG | + | chr7_3:29290464-29290483 | None:intergenic | 35.0% | |
| !! | GGTATTGCACTTTTTGTGAA+AGG | + | chr7_3:29290502-29290521 | None:intergenic | 35.0% |
| AATAACTCTTCTCAAGGAAG+AGG | + | chr7_3:29290539-29290558 | None:intergenic | 35.0% | |
| AGAGGAAATAACTCTTCTCA+AGG | + | chr7_3:29290545-29290564 | None:intergenic | 35.0% | |
| GTGAATGGACAAAAGCAATT+TGG | + | chr7_3:29290575-29290594 | None:intergenic | 35.0% | |
| ACTAGAAGACACTAATGGTT+TGG | + | chr7_3:29290606-29290625 | None:intergenic | 35.0% | |
| AAACCATTAGTGTCTTCTAG+TGG | - | chr7_3:29290605-29290624 | Msa1099980:intron | 35.0% | |
| GAAAAGACTCTGTTTATTGG+TGG | - | chr7_3:29290686-29290705 | Msa1099980:intron | 35.0% | |
| !! | GGTTTGAATGAAGAGTATCA+AGG | + | chr7_3:29290746-29290765 | None:intergenic | 35.0% |
| GATTACTTCACTGAAATGAG+GGG | + | chr7_3:29290896-29290915 | None:intergenic | 35.0% | |
| CAGATTACTTCACTGAAATG+AGG | + | chr7_3:29290898-29290917 | None:intergenic | 35.0% | |
| CATGAGAGGTGATAGAATTA+GGG | + | chr7_3:29290975-29290994 | None:intergenic | 35.0% | |
| TCATGAGAGGTGATAGAATT+AGG | + | chr7_3:29290976-29290995 | None:intergenic | 35.0% | |
| CTGAAAGATAGATTCATGAG+AGG | + | chr7_3:29290989-29291008 | None:intergenic | 35.0% | |
| ACAACACTTTGTGCAATAGA+AGG | - | chr7_3:29291043-29291062 | Msa1099980:intron | 35.0% | |
| ACTTGTAACGAAGAAGAAAG+AGG | - | chr7_3:29291405-29291424 | Msa1099980:intron | 35.0% | |
| !! | AATCAGAGTAGTGTTGATTG+CGG | - | chr7_3:29291501-29291520 | Msa1099980:intron | 35.0% |
| TAGTTAGAGTTATCATGAGC+TGG | + | chr7_3:29286898-29286917 | None:intergenic | 35.0% | |
| TAACGTAGAGGAAGATAACT+TGG | + | chr7_3:29286994-29287013 | None:intergenic | 35.0% | |
| ACATGGAGAAAATAACGTAG+AGG | + | chr7_3:29287006-29287025 | None:intergenic | 35.0% | |
| AAATGGTCAGAAAACTACTG+AGG | - | chr7_3:29292081-29292100 | Msa1099980:intron | 35.0% | |
| ! | AAACTCAGGTTGTTCTAGCA+TGG | - | chr7_3:29286331-29286350 | Msa1099980:CDS | 40.0% |
| ATAAATGCTGGTGCATTAGG+CGG | + | chr7_3:29286411-29286430 | None:intergenic | 40.0% | |
| CCAATAAATGCTGGTGCATT+AGG | + | chr7_3:29286414-29286433 | None:intergenic | 40.0% | |
| CCTAATGCACCAGCATTTAT+TGG | - | chr7_3:29286411-29286430 | Msa1099980:intron | 40.0% | |
| GCAGGTCAAGTTCAATTTGA+TGG | + | chr7_3:29286683-29286702 | None:intergenic | 40.0% | |
| CTTAAGCAACAAGGTAAACC+TGG | + | chr7_3:29286709-29286728 | None:intergenic | 40.0% | |
| ! | CAGGTTTACCTTGTTGCTTA+AGG | - | chr7_3:29286707-29286726 | Msa1099980:intron | 40.0% |
| GAAGATAAAACCGCCATTGA+AGG | - | chr7_3:29286782-29286801 | Msa1099980:intron | 40.0% | |
| ! | TTTTTCACCACCTTCAATGG+CGG | + | chr7_3:29286795-29286814 | None:intergenic | 40.0% |
| ATGTATGCTCAAACTAGGGA+TGG | + | chr7_3:29287069-29287088 | None:intergenic | 40.0% | |
| TCATGAGCGTACCAAACATT+TGG | + | chr7_3:29287216-29287235 | None:intergenic | 40.0% | |
| TTGGTACGCTCATGAAAAAC+CGG | - | chr7_3:29287221-29287240 | Msa1099980:intron | 40.0% | |
| TGAAGCAGAATACAGAGCAT+TGG | + | chr7_3:29287366-29287385 | None:intergenic | 40.0% | |
| TCATCTGAACTTCAACTGCT+TGG | + | chr7_3:29287518-29287537 | None:intergenic | 40.0% | |
| TGAGCTGCAAAAGCTATATC+TGG | - | chr7_3:29287647-29287666 | Msa1099980:intron | 40.0% | |
| ACTGGTTATAGGCGTTTAGT+TGG | + | chr7_3:29287701-29287720 | None:intergenic | 40.0% | |
| ATTCGTTTGTCTCAAGATGG+TGG | + | chr7_3:29287743-29287762 | None:intergenic | 40.0% | |
| AAACGAATAGAAGGGTCAAG+AGG | - | chr7_3:29287755-29287774 | Msa1099980:intron | 40.0% | |
| ATGGATGATATCATCTTGGC+AGG | + | chr7_3:29287977-29287996 | None:intergenic | 40.0% | |
| GAATAATGTGTGATCTGCAG+TGG | - | chr7_3:29288039-29288058 | Msa1099980:intron | 40.0% | |
| ! | ATCACTCTATGGTCTTAAGC+AGG | + | chr7_3:29288125-29288144 | None:intergenic | 40.0% |
| ACATGAAGCTGTCTACATGA+AGG | + | chr7_3:29288200-29288219 | None:intergenic | 40.0% | |
| CTTCATGTAGATCTCCATGA+AGG | - | chr7_3:29288212-29288231 | Msa1099980:intron | 40.0% | |
| TAGTGCAAGCAATACTCTGA+TGG | - | chr7_3:29288285-29288304 | Msa1099980:intron | 40.0% | |
| AAAGCACGTTTAGTTGCACA+GGG | + | chr7_3:29288373-29288392 | None:intergenic | 40.0% | |
| TAAAGCACGTTTAGTTGCAC+AGG | + | chr7_3:29288374-29288393 | None:intergenic | 40.0% | |
| ! | AAAATCAAGAGGCATGCAGA+TGG | + | chr7_3:29288412-29288431 | None:intergenic | 40.0% |
| TACACCCACTTACTACCTAT+AGG | - | chr7_3:29288433-29288452 | Msa1099980:intron | 40.0% | |
| CCAAACCTATAGGTAGTAAG+TGG | + | chr7_3:29288441-29288460 | None:intergenic | 40.0% | |
| CCACTTACTACCTATAGGTT+TGG | - | chr7_3:29288438-29288457 | Msa1099980:intron | 40.0% | |
| TACCTATAGGTTTGGCATCT+AGG | - | chr7_3:29288446-29288465 | Msa1099980:intron | 40.0% | |
| ACCTATAGGTTTGGCATCTA+GGG | - | chr7_3:29288447-29288466 | Msa1099980:intron | 40.0% | |
| CACTCAATGTTAACCACACT+TGG | + | chr7_3:29288489-29288508 | None:intergenic | 40.0% | |
| TGCTATGCAAGCAGAAATAG+AGG | + | chr7_3:29288512-29288531 | None:intergenic | 40.0% | |
| CAACCACCTAGAATCTTTAC+TGG | - | chr7_3:29288534-29288553 | Msa1099980:intron | 40.0% | |
| CTTGCAAATAAGATGGGGTA+TGG | - | chr7_3:29288689-29288708 | Msa1099980:intron | 40.0% | |
| CTCACACCTATATTACTCAC+AGG | - | chr7_3:29288820-29288839 | Msa1099980:intron | 40.0% | |
| TGGAACTGTAGTGATACTAG+AGG | - | chr7_3:29288885-29288904 | Msa1099980:intron | 40.0% | |
| ! | ACCTAAGAAAGCACACTTTC+TGG | - | chr7_3:29289011-29289030 | Msa1099980:intron | 40.0% |
| TAGTAGGGATCCTGTTAATC+AGG | - | chr7_3:29289166-29289185 | Msa1099980:intron | 40.0% | |
| AGAATGGTAGAGTGGAAAGA+AGG | + | chr7_3:29289284-29289303 | None:intergenic | 40.0% | |
| GTATATTCTCCACAGCAGAA+TGG | + | chr7_3:29289300-29289319 | None:intergenic | 40.0% | |
| GTATTTGTGACCATGTACAG+AGG | - | chr7_3:29289530-29289549 | Msa1099980:intron | 40.0% | |
| ! | AGGAACACTTTGAGGAAGAT+TGG | + | chr7_3:29289885-29289904 | None:intergenic | 40.0% |
| TACAGGAAAGGAACACTTTG+AGG | + | chr7_3:29289893-29289912 | None:intergenic | 40.0% | |
| GGCTGATAAGTGTACTATAC+AGG | + | chr7_3:29289910-29289929 | None:intergenic | 40.0% | |
| ACTACAGAGGCAAATTGTAG+AGG | + | chr7_3:29290053-29290072 | None:intergenic | 40.0% | |
| ACCTAATGGAAACACTACAG+AGG | + | chr7_3:29290066-29290085 | None:intergenic | 40.0% | |
| !! | ACTGGATGGATTGTAGATAC+AGG | + | chr7_3:29290164-29290183 | None:intergenic | 40.0% |
| AATCTCTACTCATCTAGTGG+AGG | + | chr7_3:29290227-29290246 | None:intergenic | 40.0% | |
| ! | GACAAAGTGTTCAGCAAATG+TGG | + | chr7_3:29290261-29290280 | None:intergenic | 40.0% |
| AGATGATGCAGAGAGTAAAG+TGG | + | chr7_3:29290384-29290403 | None:intergenic | 40.0% | |
| AAGCAATTTGGTAGAGGAAG+AGG | + | chr7_3:29290563-29290582 | None:intergenic | 40.0% | |
| GGACAAAAGCAATTTGGTAG+AGG | + | chr7_3:29290569-29290588 | None:intergenic | 40.0% | |
| ! | GGTTTGGTTAATGCTGTGAA+TGG | + | chr7_3:29290590-29290609 | None:intergenic | 40.0% |
| ACACCACTAGAAGACACTAA+TGG | + | chr7_3:29290611-29290630 | None:intergenic | 40.0% | |
| !!! | CTTTTCTATGGTGCTACAAC+AGG | + | chr7_3:29290672-29290691 | None:intergenic | 40.0% |
| ! | ACTCTGTTTATTGGTGGCAT+AGG | - | chr7_3:29290692-29290711 | Msa1099980:intron | 40.0% |
| !!! | GGCTTCTCAGGTTTTGTTAA+TGG | + | chr7_3:29290720-29290739 | None:intergenic | 40.0% |
| !! | GAATGAAGAGTATCAAGGAG+TGG | + | chr7_3:29290741-29290760 | None:intergenic | 40.0% |
| CAGCACAAGTACATGCAATA+GGG | - | chr7_3:29290822-29290841 | Msa1099980:intron | 40.0% | |
| GCAATAGGGCAATTACAATG+AGG | - | chr7_3:29290836-29290855 | Msa1099980:intron | 40.0% | |
| GCAACAATCTGGTACATACA+TGG | + | chr7_3:29291087-29291106 | None:intergenic | 40.0% | |
| CTAATGAAGATGATCTGGAC+AGG | + | chr7_3:29291126-29291145 | None:intergenic | 40.0% | |
| CTGTCCAGATCATCTTCATT+AGG | - | chr7_3:29291124-29291143 | Msa1099980:intron | 40.0% | |
| CATGAAGATGTGAAGAGCTT+TGG | + | chr7_3:29291193-29291212 | None:intergenic | 40.0% | |
| CAAAGCTCTTCACATCTTCA+TGG | - | chr7_3:29291191-29291210 | Msa1099980:intron | 40.0% | |
| ATGGTGACAATTACCATGCT+TGG | + | chr7_3:29291218-29291237 | None:intergenic | 40.0% | |
| AGTGTTACACCGCAGTTAAA+TGG | + | chr7_3:29291237-29291256 | None:intergenic | 40.0% | |
| TCTGAAGAATGGACGAAGTA+AGG | - | chr7_3:29291273-29291292 | Msa1099980:intron | 40.0% | |
| !! | GGCGGTTTTATCTTCTTACA+TGG | + | chr7_3:29286777-29286796 | None:intergenic | 40.0% |
| GAAGATAAAACCGCCATTGA+AGG | - | chr7_3:29286782-29286801 | Msa1099980:intron | 40.0% | |
| ! | TTTTTCACCACCTTCAATGG+CGG | + | chr7_3:29286795-29286814 | None:intergenic | 40.0% |
| !!! | AGCTTTTTCACCACCTTCAA+TGG | + | chr7_3:29291578-29291597 | None:intergenic | 40.0% |
| !! | GTTTTGGTCATACAGTCTGA+AGG | - | chr7_3:29291846-29291865 | Msa1099980:intron | 40.0% |
| AATTTGGAGGACCAAAATCG+TGG | + | chr7_3:29291991-29292010 | None:intergenic | 40.0% | |
| !!! | ATTCGACCTTGGAAGTGTTT+TGG | - | chr7_3:29292021-29292040 | Msa1099980:CDS | 40.0% |
| TATTTGCTCAACTAACTGGC+AGG | - | chr7_3:29292114-29292133 | Msa1099980:intron | 40.0% | |
| GTTAAGAAGTGATGAGGATG+AGG | - | chr7_3:29292136-29292155 | Msa1099980:intron | 40.0% | |
| TGTTGGAAATCCACAAACTG+CGG | + | chr7_3:29292318-29292337 | None:intergenic | 40.0% | |
| TTGTGGATTTCCAACAGAAG+AGG | - | chr7_3:29292322-29292341 | Msa1099980:CDS | 40.0% | |
| AAAAGTTGTGCCTCTTCTGT+TGG | + | chr7_3:29292335-29292354 | None:intergenic | 40.0% | |
| GGCTGAAGGAAAAACTGGTA+AGG | + | chr7_3:29286390-29286409 | None:intergenic | 45.0% | |
| ! | GAAAGGTTGTCCACCTTTTG+AGG | + | chr7_3:29286575-29286594 | None:intergenic | 45.0% |
| TTGAACTTGACCTGCTTACC+AGG | - | chr7_3:29286688-29286707 | Msa1099980:intron | 45.0% | |
| ACAAGGTAAACCTGGTAAGC+AGG | + | chr7_3:29286701-29286720 | None:intergenic | 45.0% | |
| GATAAAACCGCCATTGAAGG+TGG | - | chr7_3:29286785-29286804 | Msa1099980:intron | 45.0% | |
| AACAGCTGACATGTTCACCA+AGG | + | chr7_3:29287117-29287136 | None:intergenic | 45.0% | |
| ACATGTCAGCTGTTTGATGC+TGG | - | chr7_3:29287123-29287142 | Msa1099980:intron | 45.0% | |
| CATGTCAGCTGTTTGATGCT+GGG | - | chr7_3:29287124-29287143 | Msa1099980:intron | 45.0% | |
| TAGAGTACAGGCAAACGAGA+AGG | - | chr7_3:29287281-29287300 | Msa1099980:intron | 45.0% | |
| GCAGATGAACATGAGACTGT+TGG | - | chr7_3:29287386-29287405 | Msa1099980:intron | 45.0% | |
| !! | TGAGACTGTTGGCTGTTTCT+TGG | - | chr7_3:29287397-29287416 | Msa1099980:intron | 45.0% |
| !! | TGGCTGTTTCTTGGATTTCC+AGG | - | chr7_3:29287406-29287425 | Msa1099980:intron | 45.0% |
| ! | GAGAACGTTTCAAGTAGCGT+AGG | - | chr7_3:29287564-29287583 | Msa1099980:intron | 45.0% |
| AATAGAAGGGTCAAGAGGAG+TGG | - | chr7_3:29287760-29287779 | Msa1099980:intron | 45.0% | |
| ! | TTAGAACTGCTTGCTGAAGC+AGG | + | chr7_3:29287809-29287828 | None:intergenic | 45.0% |
| TTAAGCAGGCTAGTAGGCAA+TGG | + | chr7_3:29288111-29288130 | None:intergenic | 45.0% | |
| ! | ATGGTCTTAAGCAGGCTAGT+AGG | + | chr7_3:29288117-29288136 | None:intergenic | 45.0% |
| TTGCAAACTTGGCCAGGTTT+AGG | - | chr7_3:29288154-29288173 | Msa1099980:intron | 45.0% | |
| TTAGGAGAAGTGACACCTTG+AGG | - | chr7_3:29288172-29288191 | Msa1099980:intron | 45.0% | |
| !! | GTCTACATGAAGGTACCTCA+AGG | + | chr7_3:29288190-29288209 | None:intergenic | 45.0% |
| CAGGGGTTTAATCAGACTGA+GGG | + | chr7_3:29288355-29288374 | None:intergenic | 45.0% | |
| ACAGGGGTTTAATCAGACTG+AGG | + | chr7_3:29288356-29288375 | None:intergenic | 45.0% | |
| AAGCACGTTTAGTTGCACAG+GGG | + | chr7_3:29288372-29288391 | None:intergenic | 45.0% | |
| CCTATAGGTTTGGCATCTAG+GGG | - | chr7_3:29288448-29288467 | Msa1099980:intron | 45.0% | |
| AATCAGCAAACACCCAAGTG+TGG | - | chr7_3:29288473-29288492 | Msa1099980:intron | 45.0% | |
| CAGCCAGTAAAGATTCTAGG+TGG | + | chr7_3:29288540-29288559 | None:intergenic | 45.0% | |
| ACTGGCTGAAAGAAAACTGG+TGG | - | chr7_3:29288552-29288571 | Msa1099980:intron | 45.0% | |
| CTGGCTGAAAGAAAACTGGT+GGG | - | chr7_3:29288553-29288572 | Msa1099980:intron | 45.0% | |
| ! | AGATGGGGTATGGCTATTTC+TGG | - | chr7_3:29288699-29288718 | Msa1099980:intron | 45.0% |
| CCACCAGTGATACAGAAGAA+AGG | + | chr7_3:29288762-29288781 | None:intergenic | 45.0% | |
| CCTTTCTTCTGTATCACTGG+TGG | - | chr7_3:29288759-29288778 | Msa1099980:intron | 45.0% | |
| ACAGGCATGATAGGATTGAC+TGG | - | chr7_3:29288838-29288857 | Msa1099980:intron | 45.0% | |
| !! | TAGGATTGACTGGCCTATCA+AGG | - | chr7_3:29288848-29288867 | Msa1099980:intron | 45.0% |
| AGGACAAAACCTTTGATGCC+TGG | - | chr7_3:29288982-29289001 | Msa1099980:intron | 45.0% | |
| GCTTTCTTAGGTTACAAGCC+AGG | + | chr7_3:29289003-29289022 | None:intergenic | 45.0% | |
| ! | GCCAGAAAGTGTGCTTTCTT+AGG | + | chr7_3:29289015-29289034 | None:intergenic | 45.0% |
| TTTGGTACAGCCTCTGTACA+TGG | + | chr7_3:29289543-29289562 | None:intergenic | 45.0% | |
| TGTACAGAGGCTGTACCAAA+TGG | - | chr7_3:29289543-29289562 | Msa1099980:intron | 45.0% | |
| ATGGAATCCTATGGCATCTC+AGG | + | chr7_3:29289749-29289768 | None:intergenic | 45.0% | |
| AGATGCCATAGGATTCCATC+AGG | - | chr7_3:29289750-29289769 | Msa1099980:intron | 45.0% | |
| ATGTGCCTGATGGAATCCTA+TGG | + | chr7_3:29289758-29289777 | None:intergenic | 45.0% | |
| CACAAAGAACATGTGCCTGA+TGG | + | chr7_3:29289768-29289787 | None:intergenic | 45.0% | |
| GCCTCTGTAGTGTTTCCATT+AGG | - | chr7_3:29290062-29290081 | Msa1099980:intron | 45.0% | |
| GAAGAGGTAGAGGAAATGGA+AGG | + | chr7_3:29290523-29290542 | None:intergenic | 45.0% | |
| CAAGGAAGAGGTAGAGGAAA+TGG | + | chr7_3:29290527-29290546 | None:intergenic | 45.0% | |
| TCTTCTCAAGGAAGAGGTAG+AGG | + | chr7_3:29290533-29290552 | None:intergenic | 45.0% | |
| AGTTCTATCCTCTGCTCTGA+AGG | - | chr7_3:29290781-29290800 | Msa1099980:intron | 45.0% | |
| ! | CATGTACTTGTGCTGCTATG+AGG | + | chr7_3:29290817-29290836 | None:intergenic | 45.0% |
| GCAGCACAAGTACATGCAAT+AGG | - | chr7_3:29290821-29290840 | Msa1099980:intron | 45.0% | |
| GGGCAATTACAATGAGGCAT+TGG | - | chr7_3:29290842-29290861 | Msa1099980:intron | 45.0% | |
| CACTGAAATGAGGGGTCTAT+GGG | + | chr7_3:29290888-29290907 | None:intergenic | 45.0% | |
| TCACTGAAATGAGGGGTCTA+TGG | + | chr7_3:29290889-29290908 | None:intergenic | 45.0% | |
| ! | TTGGGAAAGGTGCAACAATC+TGG | + | chr7_3:29291098-29291117 | None:intergenic | 45.0% |
| ACATCTTCATGGACCAAGCA+TGG | - | chr7_3:29291202-29291221 | Msa1099980:intron | 45.0% | |
| GATAAAACCGCCATTGAAGG+TGG | - | chr7_3:29286785-29286804 | Msa1099980:intron | 45.0% | |
| TGGCAGGTTAAGAAGTGATG+AGG | - | chr7_3:29292130-29292149 | Msa1099980:intron | 45.0% | |
| GTTGGAAATCCACAAACTGC+GGG | + | chr7_3:29292317-29292336 | None:intergenic | 45.0% | |
| TAGGCGGCTGAAGGAAAAAC+TGG | + | chr7_3:29286395-29286414 | None:intergenic | 50.0% | |
| !! | TGCGAGGGGGTATTAACACA+TGG | + | chr7_3:29287023-29287042 | None:intergenic | 50.0% |
| GTTAATACCCCCTCGCAAAC+TGG | - | chr7_3:29287026-29287045 | Msa1099980:intron | 50.0% | |
| TACCAACCTCCAGTTTGCGA+GGG | + | chr7_3:29287038-29287057 | None:intergenic | 50.0% | |
| ! | GACATGTTCACCAAGGCATC+TGG | + | chr7_3:29287110-29287129 | None:intergenic | 50.0% |
| TCAGCTGTTTGATGCTGGGA+GGG | - | chr7_3:29287128-29287147 | Msa1099980:intron | 50.0% | |
| ACACAGCCATTGCAGTTCTC+TGG | - | chr7_3:29287331-29287350 | Msa1099980:intron | 50.0% | |
| CTGCAACCAGAGAACTGCAA+TGG | + | chr7_3:29287340-29287359 | None:intergenic | 50.0% | |
| GACACTCGTCGCTCTATATC+AGG | + | chr7_3:29287464-29287483 | None:intergenic | 50.0% | |
| TGGCTTCAGTGATGCAGACT+GGG | + | chr7_3:29287498-29287517 | None:intergenic | 50.0% | |
| TTGGCTTCAGTGATGCAGAC+TGG | + | chr7_3:29287499-29287518 | None:intergenic | 50.0% | |
| TTGAAACGTTCTCCAGGCAG+GGG | + | chr7_3:29287557-29287576 | None:intergenic | 50.0% | |
| CTTGAAACGTTCTCCAGGCA+GGG | + | chr7_3:29287558-29287577 | None:intergenic | 50.0% | |
| ACTTGAAACGTTCTCCAGGC+AGG | + | chr7_3:29287559-29287578 | None:intergenic | 50.0% | |
| CGCTACTTGAAACGTTCTCC+AGG | + | chr7_3:29287563-29287582 | None:intergenic | 50.0% | |
| CAGTAGGAGAGGCCATGAAT+TGG | - | chr7_3:29287615-29287634 | Msa1099980:intron | 50.0% | |
| GAGGTAGCACGTTCTTCTAG+AGG | + | chr7_3:29287860-29287879 | None:intergenic | 50.0% | |
| AAGAGCTTGCAAACTTGGCC+AGG | - | chr7_3:29288148-29288167 | Msa1099980:intron | 50.0% | |
| !! | GGTGTCACTTCTCCTAAACC+TGG | + | chr7_3:29288169-29288188 | None:intergenic | 50.0% |
| ! | CACTAGCCTCCATTCATGGA+TGG | + | chr7_3:29288270-29288289 | None:intergenic | 50.0% |
| ! | CTTGCACTAGCCTCCATTCA+TGG | + | chr7_3:29288274-29288293 | None:intergenic | 50.0% |
| CCCCTAGATGCCAAACCTAT+AGG | + | chr7_3:29288451-29288470 | None:intergenic | 50.0% | |
| GGTTACAAGCCAGGCATCAA+AGG | + | chr7_3:29288994-29289013 | None:intergenic | 50.0% | |
| TCCACTCTACCATTCTGCTG+TGG | - | chr7_3:29289288-29289307 | Msa1099980:intron | 50.0% | |
| TCCACAGCAGAATGGTAGAG+TGG | + | chr7_3:29289292-29289311 | None:intergenic | 50.0% | |
| ! | CAGGCTTGGTCATTTGTCCA+AGG | + | chr7_3:29289730-29289749 | None:intergenic | 50.0% |
| ATCCTATGGCATCTCAGGCT+TGG | + | chr7_3:29289744-29289763 | None:intergenic | 50.0% | |
| TATCCACCAAACTGGGGAAG+AGG | + | chr7_3:29290440-29290459 | None:intergenic | 50.0% | |
| CATGGCTATCCACCAAACTG+GGG | + | chr7_3:29290446-29290465 | None:intergenic | 50.0% | |
| GCATGGCTATCCACCAAACT+GGG | + | chr7_3:29290447-29290466 | None:intergenic | 50.0% | |
| AGCATGGCTATCCACCAAAC+TGG | + | chr7_3:29290448-29290467 | None:intergenic | 50.0% | |
| GTATCAAGGAGTGGCTTCTC+AGG | + | chr7_3:29290732-29290751 | None:intergenic | 50.0% | |
| !! | TGATCTGGACAGGAGTGCTT+GGG | + | chr7_3:29291116-29291135 | None:intergenic | 50.0% |
| !! | ATGATCTGGACAGGAGTGCT+TGG | + | chr7_3:29291117-29291136 | None:intergenic | 50.0% |
| !!! | GACCTTGGAAGTGTTTTGGC+AGG | - | chr7_3:29292025-29292044 | Msa1099980:CDS | 50.0% |
| TGCCTGCCAAAACACTTCCA+AGG | + | chr7_3:29292030-29292049 | None:intergenic | 50.0% | |
| ATCCACAAACTGCGGGACTT+GGG | + | chr7_3:29292310-29292329 | None:intergenic | 50.0% | |
| AATCCACAAACTGCGGGACT+TGG | + | chr7_3:29292311-29292330 | None:intergenic | 50.0% | |
| TAGTGACACTCCTCCAGCAC+GGG | + | chr7_3:29286652-29286671 | None:intergenic | 55.0% | |
| CTAGTGACACTCCTCCAGCA+CGG | + | chr7_3:29286653-29286672 | None:intergenic | 55.0% | |
| AATACCCCCTCGCAAACTGG+AGG | - | chr7_3:29287029-29287048 | Msa1099980:intron | 55.0% | |
| ACCAACCTCCAGTTTGCGAG+GGG | + | chr7_3:29287037-29287056 | None:intergenic | 55.0% | |
| CTACCAACCTCCAGTTTGCG+AGG | + | chr7_3:29287039-29287058 | None:intergenic | 55.0% | |
| ! | CTGTCTAGGACCAGATGCCT+TGG | - | chr7_3:29287097-29287116 | Msa1099980:intron | 55.0% |
| GTCAGCTGTTTGATGCTGGG+AGG | - | chr7_3:29287127-29287146 | Msa1099980:intron | 55.0% | |
| GTTTGATGCTGGGAGGGAAC+TGG | - | chr7_3:29287134-29287153 | Msa1099980:intron | 55.0% | |
| ! | TTGGGCACTCTCTGGTTTCC+TGG | + | chr7_3:29287427-29287446 | None:intergenic | 55.0% |
| TTCAGTGATGCAGACTGGGG+TGG | + | chr7_3:29287494-29287513 | None:intergenic | 55.0% | |
| GGCTTCAGTGATGCAGACTG+GGG | + | chr7_3:29287497-29287516 | None:intergenic | 55.0% | |
| AGAAGGGTCAAGAGGAGTGG+AGG | - | chr7_3:29287763-29287782 | Msa1099980:intron | 55.0% | |
| GACCAAGCCTGAGATGCCAT+AGG | - | chr7_3:29289739-29289758 | Msa1099980:intron | 55.0% | |
| TGCAAGAGCCTTCAGAGCAG+AGG | + | chr7_3:29290792-29290811 | None:intergenic | 55.0% | |
| !! | TGGACAGGAGTGCTTGGGAA+AGG | + | chr7_3:29291111-29291130 | None:intergenic | 55.0% |
| CTGGTGCATTAGGCGGCTGA+AGG | + | chr7_3:29286404-29286423 | None:intergenic | 60.0% | |
| CCAACCTCCAGTTTGCGAGG+GGG | + | chr7_3:29287036-29287055 | None:intergenic | 60.0% | |
| TGCAGACTGGGGTGGATGTG+TGG | + | chr7_3:29287486-29287505 | None:intergenic | 60.0% | |
| GGAAAGAAGAGACCCCTGCC+TGG | - | chr7_3:29287542-29287561 | Msa1099980:intron | 60.0% | |
| CCAAACTGGGGAAGAGGTGG+AGG | + | chr7_3:29290434-29290453 | None:intergenic | 60.0% | |
| CCTCCACCTCTTCCCCAGTT+TGG | - | chr7_3:29290431-29290450 | Msa1099980:intron | 60.0% | |
| CCACCAAACTGGGGAAGAGG+TGG | + | chr7_3:29290437-29290456 | None:intergenic | 60.0% | |
| CCACCTCTTCCCCAGTTTGG+TGG | - | chr7_3:29290434-29290453 | Msa1099980:intron | 60.0% | |
| CACCCAAGTCCCGCAGTTTG+TGG | - | chr7_3:29292305-29292324 | Msa1099980:CDS | 60.0% | |
| ! | CACTCCTCCAGCACGGGTTG+CGG | + | chr7_3:29286646-29286665 | None:intergenic | 65.0% |
| CCCCCTCGCAAACTGGAGGT+TGG | - | chr7_3:29287033-29287052 | Msa1099980:intron | 65.0% | |
| GGGTCAAGAGGAGTGGAGGC+AGG | - | chr7_3:29287767-29287786 | Msa1099980:intron | 65.0% | |
| GCTTTGGCCGCAACCCGTGC+TGG | - | chr7_3:29286636-29286655 | Msa1099980:intron | 70.0% | |
| TTGGCCGCAACCCGTGCTGG+AGG | - | chr7_3:29286639-29286658 | Msa1099980:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 29286267 | 29292400 | 29286267 | ID=Msa1099980;Name=Msa1099980 |
| chr7_3 | mRNA | 29286267 | 29292400 | 29286267 | ID=Msa1099980-mRNA-1;Parent=Msa1099980;Name=Msa1099980-mRNA-1;_AED=0.48;_eAED=0.49;_QI=0|0|0|1|0|0|4|0|137 |
| chr7_3 | exon | 29292223 | 29292400 | 29292223 | ID=Msa1099980-mRNA-1:exon:6224;Parent=Msa1099980-mRNA-1 |
| chr7_3 | exon | 29291958 | 29292051 | 29291958 | ID=Msa1099980-mRNA-1:exon:6223;Parent=Msa1099980-mRNA-1 |
| chr7_3 | exon | 29286510 | 29286531 | 29286510 | ID=Msa1099980-mRNA-1:exon:6222;Parent=Msa1099980-mRNA-1 |
| chr7_3 | exon | 29286267 | 29286383 | 29286267 | ID=Msa1099980-mRNA-1:exon:6221;Parent=Msa1099980-mRNA-1 |
| chr7_3 | CDS | 29292223 | 29292400 | 29292223 | ID=Msa1099980-mRNA-1:cds;Parent=Msa1099980-mRNA-1 |
| chr7_3 | CDS | 29291958 | 29292051 | 29291958 | ID=Msa1099980-mRNA-1:cds;Parent=Msa1099980-mRNA-1 |
| chr7_3 | CDS | 29286510 | 29286531 | 29286510 | ID=Msa1099980-mRNA-1:cds;Parent=Msa1099980-mRNA-1 |
| chr7_3 | CDS | 29286267 | 29286383 | 29286267 | ID=Msa1099980-mRNA-1:cds;Parent=Msa1099980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
