AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0948320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0948320 MtrunA17_Chr2g0285481 62.654 324 115 4 2 321 1 322 2.69e-142 405
Msa0948320 MtrunA17_Chr1g0172741 62.037 324 117 4 2 321 1 322 7.31e-141 401
Msa0948320 MtrunA17_Chr8g0334551 56.707 328 135 2 1 321 1 328 2.05e-128 370
Msa0948320 MtrunA17_Chr2g0321391 67.213 244 77 2 79 321 3 244 7.38e-116 335
Msa0948320 MtrunA17_Chr5g0422701 65.174 201 67 2 122 321 14 212 4.63e-87 260
Msa0948320 MtrunA17_Chr2g0295811 41.629 221 111 6 119 321 10 230 3.54e-44 151
Msa0948320 MtrunA17_Chr5g0422691 61.957 92 34 1 13 103 14 105 8.06e-35 122
Msa0948320 MtrunA17_Chr2g0295611 62.500 96 35 1 100 194 1 96 3.24e-33 118
Msa0948320 MtrunA17_Chr5g0402821 27.848 316 198 9 22 315 16 323 1.33e-25 104
Msa0948320 MtrunA17_Chr3g0113081 38.816 152 84 2 22 173 185 327 1.47e-25 107
Msa0948320 MtrunA17_Chr3g0113081 28.479 309 159 8 12 311 373 628 1.28e-24 104
Msa0948320 MtrunA17_Chr3g0113081 36.567 134 78 2 11 144 3 129 1.19e-17 83.6
Msa0948320 MtrunA17_Chr8g0362511 36.095 169 103 3 21 187 67 232 1.69e-25 105
Msa0948320 MtrunA17_Chr5g0405761 28.428 299 184 7 19 312 47 320 8.04e-24 99.8
Msa0948320 MtrunA17_Chr6g0469501 63.793 58 21 0 264 321 1 58 1.12e-21 86.7
Msa0948320 MtrunA17_Chr1g0176881 29.412 136 95 1 21 156 21 155 5.73e-15 75.5
Msa0948320 MtrunA17_Chr1g0176881 29.655 145 99 2 2 146 175 316 5.73e-15 75.5
Msa0948320 MtrunA17_Chr8g0360271 25.256 293 183 11 33 310 21 292 1.63e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0948320 AT5G05800.1 25.552 317 211 6 6 322 156 447 6.67e-25 104
Msa0948320 AT5G05800.1 36.937 111 69 1 20 130 2 111 1.08e-17 84.0
Msa0948320 AT5G05800.5 25.552 317 211 6 6 322 156 447 6.67e-25 104
Msa0948320 AT5G05800.5 36.937 111 69 1 20 130 2 111 1.08e-17 84.0
Msa0948320 AT5G05800.3 25.552 317 211 6 6 322 156 447 6.67e-25 104
Msa0948320 AT5G05800.3 36.937 111 69 1 20 130 2 111 1.08e-17 84.0
Msa0948320 AT5G05800.2 25.552 317 211 6 6 322 156 447 6.67e-25 104
Msa0948320 AT5G05800.2 36.937 111 69 1 20 130 2 111 1.08e-17 84.0
Msa0948320 AT5G05800.4 25.552 317 211 6 6 322 156 447 6.67e-25 104
Msa0948320 AT5G05800.4 36.937 111 69 1 20 130 2 111 1.08e-17 84.0
Msa0948320 AT3G11290.2 26.214 309 187 8 20 310 163 448 1.81e-20 92.0
Msa0948320 AT3G11290.1 26.214 309 187 8 20 310 163 448 1.81e-20 92.0
Msa0948320 AT2G24960.1 29.197 137 96 1 8 144 155 290 5.17e-15 76.3
Msa0948320 AT2G24960.1 25.874 143 105 1 12 154 2 143 6.91e-11 63.9
Msa0948320 AT2G24960.2 29.197 137 96 1 8 144 155 290 5.40e-15 76.3
Msa0948320 AT2G24960.2 27.972 143 102 1 12 154 314 455 1.94e-12 68.6
Msa0948320 AT2G24960.2 26.667 135 98 1 20 154 10 143 7.49e-11 63.5
Msa0948320 AT3G11310.1 34.266 143 88 2 20 157 171 312 9.18e-14 72.4
Msa0948320 AT4G02210.1 27.673 159 113 2 13 170 2 159 2.73e-11 64.7
Msa0948320 AT4G02210.2 27.673 159 113 2 13 170 2 159 2.73e-11 64.7
Msa0948320 AT2G19220.1 26.332 319 197 12 9 317 149 439 3.75e-11 64.3

Find 76 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGCATGGTATAACTTATT+TGG 0.134716 6_3:+32356492 Msa0948320:CDS
ACAACTGAATTTGGAAATAT+TGG 0.148866 6_3:+32356895 Msa0948320:CDS
AAGAAGGGTGGACAAATATT+AGG 0.206643 6_3:+32356388 Msa0948320:CDS
GTTGGAGCAACAACTGAATT+TGG 0.213211 6_3:+32356886 Msa0948320:CDS
GGCAGAAAACAAAAGCTATT+TGG 0.232374 6_3:+32356283 Msa0948320:CDS
AACTTATTTGGGAGAGAAAC+TGG 0.287945 6_3:+32356504 Msa0948320:CDS
TTGGGAGAGAAACTGGATTA+GGG 0.298488 6_3:+32356511 Msa0948320:CDS
TTTGGGAGAGAAACTGGATT+AGG 0.315464 6_3:+32356510 Msa0948320:CDS
GAAATAAACATCTCCCTTGC+AGG 0.323302 6_3:-32357186 None:intergenic
AAACTTTGTGAAAGCATGTT+TGG 0.334075 6_3:+32356323 Msa0948320:CDS
GCAGAAAACAAAAGCTATTT+GGG 0.339319 6_3:+32356284 Msa0948320:CDS
GTCCGGTTAAATTATGAAAT+CGG 0.352053 6_3:-32356413 None:intergenic
TGTATTACATACCAGTTGTT+TGG 0.352266 6_3:-32356583 None:intergenic
CAACTGAATTTGGAAATATT+GGG 0.356640 6_3:+32356896 Msa0948320:CDS
GAGCATGGTATAACTTATTT+GGG 0.363157 6_3:+32356493 Msa0948320:CDS
TTCAAGGATGTAGTGGCTAA+TGG 0.366838 6_3:+32356745 Msa0948320:CDS
CAGAGGAGAAGAGGTTGAAT+TGG 0.373243 6_3:+32357220 Msa0948320:CDS
GTCCGATTTCATAATTTAAC+CGG 0.374307 6_3:+32356411 Msa0948320:CDS
TTGGTCTCCCACCACTCATC+AGG 0.410369 6_3:-32356564 None:intergenic
GTTCCTCCTCACCTAGTGAT+GGG 0.415978 6_3:+32356259 Msa0948320:CDS
GAAAAGTGTGGTTAACTCAT+TGG 0.420206 6_3:-32356725 None:intergenic
AGAAGGGTGGACAAATATTA+GGG 0.422862 6_3:+32356389 Msa0948320:CDS
ATGATCTTTATTTGCATGCT+CGG 0.426517 6_3:+32357139 Msa0948320:CDS
GGTTCCTCCTCACCTAGTGA+TGG 0.438340 6_3:+32356258 Msa0948320:CDS
TTCCTCCTCACCTAGTGATG+GGG 0.476214 6_3:+32356260 Msa0948320:CDS
AGAAGGCTCAACTAAAGAAT+AGG 0.479515 6_3:+32356445 Msa0948320:CDS
TCCTCCTCACCTAGTGATGG+GGG 0.484199 6_3:+32356261 Msa0948320:CDS
GCTGCTGGTAATGCATCTAT+TGG 0.486263 6_3:+32357075 Msa0948320:CDS
GATGAGGCAGTGGCTGTAGA+AGG 0.502147 6_3:+32356838 Msa0948320:CDS
AGCCTTCTCATACTTCAGTC+CGG 0.504703 6_3:-32356430 None:intergenic
CGTACCAACACGTTCTCCCT+TGG 0.505137 6_3:-32356355 None:intergenic
TGGCTAATGGAGAGTACACT+TGG 0.522261 6_3:+32356758 Msa0948320:CDS
GCAGTGGCTGTAGAAGGATC+TGG 0.527670 6_3:+32356844 Msa0948320:CDS
ATGACAGTCTGAGAAAGGAT+TGG 0.531322 6_3:+32356469 Msa0948320:CDS
CTTCTCCTCTGAACCTCGTA+GGG 0.535159 6_3:-32357208 None:intergenic
GTGGTGGGAGACCAAACAAC+TGG 0.536532 6_3:+32356572 Msa0948320:CDS
AGGTTAGTCATGAACGGCAG+TGG 0.537233 6_3:-32357264 None:intergenic
TAGGTATGACAGTCTGAGAA+AGG 0.543958 6_3:+32356464 Msa0948320:CDS
CGTTCTCGCAATGATGCTGC+TGG 0.555390 6_3:+32357060 Msa0948320:CDS
TATTTCCCTACGAGGTTCAG+AGG 0.555424 6_3:+32357203 Msa0948320:CDS
GGAGAGAAACTGGATTAGGG+TGG 0.557144 6_3:+32356514 Msa0948320:CDS
ATCATTTGAGACTTCATCCA+TGG 0.558263 6_3:-32357121 None:intergenic
TGATGATGTTTAAGCCTGCA+AGG 0.560100 6_3:+32357172 Msa0948320:CDS
GTCAAAAGAGTGGTGAGAAG+AGG 0.562252 6_3:+32356944 Msa0948320:CDS
CATGACTAACCTGTGTGACT+AGG 0.562786 6_3:+32357275 Msa0948320:CDS
AGACTTCATCCATGGTGTGA+AGG 0.567550 6_3:-32357113 None:intergenic
TACGAGGTTCAGAGGAGAAG+AGG 0.567800 6_3:+32357211 Msa0948320:CDS
ATGTTTGGAGCAAGTCTCCA+AGG 0.570714 6_3:+32356338 Msa0948320:CDS
TACACTTGGGCACCATCATG+TGG 0.573130 6_3:+32356772 Msa0948320:CDS
TGCATCTATTGGTGAAGTGA+TGG 0.591393 6_3:+32357086 Msa0948320:CDS
TCTTCTCCTCTGAACCTCGT+AGG 0.595412 6_3:-32357209 None:intergenic
GATAGCGAGGATGCAAGTGT+TGG 0.599986 6_3:+32356868 Msa0948320:CDS
GATGGCAATACCCCACATGA+TGG 0.601622 6_3:-32356784 None:intergenic
GATGATGTTTAAGCCTGCAA+GGG 0.607001 6_3:+32357173 Msa0948320:CDS
CCTCCTCACCTAGTGATGGG+GGG 0.608278 6_3:+32356262 Msa0948320:CDS
TGAGAAAGGATTGGAGAGCA+TGG 0.612846 6_3:+32356478 Msa0948320:CDS
GCTACAACAGTGTTGTTCAC+AGG 0.614063 6_3:-32356540 None:intergenic
GTGGTTAACTCATTGGCGAA+TGG 0.617203 6_3:-32356718 None:intergenic
AGAAGGATCTGGCGATAGCG+AGG 0.624952 6_3:+32356855 Msa0948320:CDS
AACCGGACTGAAGTATGAGA+AGG 0.626830 6_3:+32356428 Msa0948320:CDS
ACACTTGGGCACCATCATGT+GGG 0.626839 6_3:+32356773 Msa0948320:CDS
CACTACATCCTTGAAAAGTG+TGG 0.627204 6_3:-32356737 None:intergenic
GGTTAGTCATGAACGGCAGT+GGG 0.628971 6_3:-32357263 None:intergenic
AAAACTGATGGTCAAAAGAG+TGG 0.632803 6_3:+32356934 Msa0948320:CDS
TTGTAGCACCTGATGAGTGG+TGG 0.632872 6_3:+32356556 Msa0948320:CDS
TCACACAGGTTAGTCATGAA+CGG 0.640237 6_3:-32357270 None:intergenic
CCATTACATCCTAGTCACAC+AGG 0.643132 6_3:-32357284 None:intergenic
GAGAGAAACTGGATTAGGGT+GGG 0.643865 6_3:+32356515 Msa0948320:CDS
GTCTCCAAGGGAGAACGTGT+TGG 0.644338 6_3:+32356351 Msa0948320:CDS
CACTTGGGCACCATCATGTG+GGG 0.646121 6_3:+32356774 Msa0948320:CDS
TGTTTGGAGCAAGTCTCCAA+GGG 0.647436 6_3:+32356339 Msa0948320:CDS
TGTAGCACCTGATGAGTGGT+GGG 0.651018 6_3:+32356557 Msa0948320:CDS
GATGGCTGACCTTCACACCA+TGG 0.672139 6_3:+32357104 Msa0948320:CDS
GGCTAATGGAGAGTACACTT+GGG 0.684848 6_3:+32356759 Msa0948320:CDS
CTGTTGTAGCACCTGATGAG+TGG 0.705267 6_3:+32356553 Msa0948320:CDS
GAGATGTTTATTTCCCTACG+AGG 0.736446 6_3:+32357195 Msa0948320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCCTAAATTTTTCATAAAGA+GGG - chr6_3:32356687-32356706 None:intergenic 20.0%
!!! TTCCTAAATTTTTCATAAAG+AGG - chr6_3:32356688-32356707 None:intergenic 20.0%
!! TTATGAAAAATTTAGGAACA+AGG + chr6_3:32356690-32356709 Msa0948320:CDS 20.0%
!! TATGAAAAATTTAGGAACAA+GGG + chr6_3:32356691-32356710 Msa0948320:CDS 20.0%
!!! TCCTAAATTTTTCATAAAGA+GGG - chr6_3:32356687-32356706 None:intergenic 20.0%
!!! TTCCTAAATTTTTCATAAAG+AGG - chr6_3:32356688-32356707 None:intergenic 20.0%
!! TTATGAAAAATTTAGGAACA+AGG + chr6_3:32356690-32356709 Msa0948320:CDS 20.0%
!! TATGAAAAATTTAGGAACAA+GGG + chr6_3:32356691-32356710 Msa0948320:CDS 20.0%
! AATACCAAGAAAAATGTTGT+GGG + chr6_3:32356237-32356256 Msa0948320:CDS 25.0%
! ACCCTCTTTATGAAAAATTT+AGG + chr6_3:32356683-32356702 Msa0948320:CDS 25.0%
! ATGAAAAATTTAGGAACAAG+GGG + chr6_3:32356692-32356711 Msa0948320:CDS 25.0%
! ACAACTGAATTTGGAAATAT+TGG + chr6_3:32356895-32356914 Msa0948320:CDS 25.0%
! CAACTGAATTTGGAAATATT+GGG + chr6_3:32356896-32356915 Msa0948320:CDS 25.0%
! AATTCTTCACAAAAAACTGA+TGG + chr6_3:32356922-32356941 Msa0948320:CDS 25.0%
! AATACCAAGAAAAATGTTGT+GGG + chr6_3:32356237-32356256 Msa0948320:CDS 25.0%
! ACCCTCTTTATGAAAAATTT+AGG + chr6_3:32356683-32356702 Msa0948320:CDS 25.0%
! ATGAAAAATTTAGGAACAAG+GGG + chr6_3:32356692-32356711 Msa0948320:CDS 25.0%
! ACAACTGAATTTGGAAATAT+TGG + chr6_3:32356895-32356914 Msa0948320:CDS 25.0%
! CAACTGAATTTGGAAATATT+GGG + chr6_3:32356896-32356915 Msa0948320:CDS 25.0%
! AATTCTTCACAAAAAACTGA+TGG + chr6_3:32356922-32356941 Msa0948320:CDS 25.0%
GAATACCAAGAAAAATGTTG+TGG + chr6_3:32356236-32356255 Msa0948320:CDS 30.0%
GCAGAAAACAAAAGCTATTT+GGG + chr6_3:32356284-32356303 Msa0948320:CDS 30.0%
! AAACTTTGTGAAAGCATGTT+TGG + chr6_3:32356323-32356342 Msa0948320:CDS 30.0%
GTCCGATTTCATAATTTAAC+CGG + chr6_3:32356411-32356430 Msa0948320:CDS 30.0%
GTCCGGTTAAATTATGAAAT+CGG - chr6_3:32356416-32356435 None:intergenic 30.0%
AGAGCATGGTATAACTTATT+TGG + chr6_3:32356492-32356511 Msa0948320:CDS 30.0%
GAGCATGGTATAACTTATTT+GGG + chr6_3:32356493-32356512 Msa0948320:CDS 30.0%
TGTATTACATACCAGTTGTT+TGG - chr6_3:32356586-32356605 None:intergenic 30.0%
AACACGAGTATACATATCTA+AGG - chr6_3:32356629-32356648 None:intergenic 30.0%
! TCATCATTTTCAAACACAGA+TGG - chr6_3:32356805-32356824 None:intergenic 30.0%
! TGATAATGATGATGATGATG+AGG + chr6_3:32356822-32356841 Msa0948320:CDS 30.0%
! ATGATCTTTATTTGCATGCT+CGG + chr6_3:32357139-32357158 Msa0948320:CDS 30.0%
GAATACCAAGAAAAATGTTG+TGG + chr6_3:32356236-32356255 Msa0948320:CDS 30.0%
GCAGAAAACAAAAGCTATTT+GGG + chr6_3:32356284-32356303 Msa0948320:CDS 30.0%
! AAACTTTGTGAAAGCATGTT+TGG + chr6_3:32356323-32356342 Msa0948320:CDS 30.0%
GTCCGATTTCATAATTTAAC+CGG + chr6_3:32356411-32356430 Msa0948320:CDS 30.0%
GTCCGGTTAAATTATGAAAT+CGG - chr6_3:32356416-32356435 None:intergenic 30.0%
AGAGCATGGTATAACTTATT+TGG + chr6_3:32356492-32356511 Msa0948320:CDS 30.0%
GAGCATGGTATAACTTATTT+GGG + chr6_3:32356493-32356512 Msa0948320:CDS 30.0%
TGTATTACATACCAGTTGTT+TGG - chr6_3:32356586-32356605 None:intergenic 30.0%
AACACGAGTATACATATCTA+AGG - chr6_3:32356629-32356648 None:intergenic 30.0%
! TCATCATTTTCAAACACAGA+TGG - chr6_3:32356805-32356824 None:intergenic 30.0%
! TGATAATGATGATGATGATG+AGG + chr6_3:32356822-32356841 Msa0948320:CDS 30.0%
! ATGATCTTTATTTGCATGCT+CGG + chr6_3:32357139-32357158 Msa0948320:CDS 30.0%
GGCAGAAAACAAAAGCTATT+TGG + chr6_3:32356283-32356302 Msa0948320:CDS 35.0%
! GTACGAGCTTTTCAAAAGAA+GGG + chr6_3:32356373-32356392 Msa0948320:CDS 35.0%
AAGAAGGGTGGACAAATATT+AGG + chr6_3:32356388-32356407 Msa0948320:CDS 35.0%
AGAAGGGTGGACAAATATTA+GGG + chr6_3:32356389-32356408 Msa0948320:CDS 35.0%
AGAAGGCTCAACTAAAGAAT+AGG + chr6_3:32356445-32356464 Msa0948320:CDS 35.0%
AACTTATTTGGGAGAGAAAC+TGG + chr6_3:32356504-32356523 Msa0948320:CDS 35.0%
GATGTGAGTTATGAAAATGC+AGG + chr6_3:32356657-32356676 Msa0948320:intron 35.0%
! GAAAAGTGTGGTTAACTCAT+TGG - chr6_3:32356728-32356747 None:intergenic 35.0%
! TGAGTTAACCACACTTTTCA+AGG + chr6_3:32356729-32356748 Msa0948320:CDS 35.0%
AAAACTGATGGTCAAAAGAG+TGG + chr6_3:32356934-32356953 Msa0948320:CDS 35.0%
!!! GCACTTGCTTTTTTCTTACT+TGG - chr6_3:32356994-32357013 None:intergenic 35.0%
! ATCATTTGAGACTTCATCCA+TGG - chr6_3:32357124-32357143 None:intergenic 35.0%
GGCAGAAAACAAAAGCTATT+TGG + chr6_3:32356283-32356302 Msa0948320:CDS 35.0%
! GTACGAGCTTTTCAAAAGAA+GGG + chr6_3:32356373-32356392 Msa0948320:CDS 35.0%
AAGAAGGGTGGACAAATATT+AGG + chr6_3:32356388-32356407 Msa0948320:CDS 35.0%
AGAAGGGTGGACAAATATTA+GGG + chr6_3:32356389-32356408 Msa0948320:CDS 35.0%
AGAAGGCTCAACTAAAGAAT+AGG + chr6_3:32356445-32356464 Msa0948320:CDS 35.0%
AACTTATTTGGGAGAGAAAC+TGG + chr6_3:32356504-32356523 Msa0948320:CDS 35.0%
GATGTGAGTTATGAAAATGC+AGG + chr6_3:32356657-32356676 Msa0948320:intron 35.0%
! GAAAAGTGTGGTTAACTCAT+TGG - chr6_3:32356728-32356747 None:intergenic 35.0%
! TGAGTTAACCACACTTTTCA+AGG + chr6_3:32356729-32356748 Msa0948320:CDS 35.0%
AAAACTGATGGTCAAAAGAG+TGG + chr6_3:32356934-32356953 Msa0948320:CDS 35.0%
!!! GCACTTGCTTTTTTCTTACT+TGG - chr6_3:32356994-32357013 None:intergenic 35.0%
! ATCATTTGAGACTTCATCCA+TGG - chr6_3:32357124-32357143 None:intergenic 35.0%
! GGAACCCACAACATTTTTCT+TGG - chr6_3:32356244-32356263 None:intergenic 40.0%
! GGTACGAGCTTTTCAAAAGA+AGG + chr6_3:32356372-32356391 Msa0948320:CDS 40.0%
TAGGTATGACAGTCTGAGAA+AGG + chr6_3:32356464-32356483 Msa0948320:CDS 40.0%
ATGACAGTCTGAGAAAGGAT+TGG + chr6_3:32356469-32356488 Msa0948320:CDS 40.0%
TTTGGGAGAGAAACTGGATT+AGG + chr6_3:32356510-32356529 Msa0948320:CDS 40.0%
TTGGGAGAGAAACTGGATTA+GGG + chr6_3:32356511-32356530 Msa0948320:CDS 40.0%
CACTACATCCTTGAAAAGTG+TGG - chr6_3:32356740-32356759 None:intergenic 40.0%
!! CACACTTTTCAAGGATGTAG+TGG + chr6_3:32356738-32356757 Msa0948320:CDS 40.0%
TTCAAGGATGTAGTGGCTAA+TGG + chr6_3:32356745-32356764 Msa0948320:CDS 40.0%
GTTGGAGCAACAACTGAATT+TGG + chr6_3:32356886-32356905 Msa0948320:CDS 40.0%
TGCATCTATTGGTGAAGTGA+TGG + chr6_3:32357086-32357105 Msa0948320:CDS 40.0%
! TGATGATGTTTAAGCCTGCA+AGG + chr6_3:32357172-32357191 Msa0948320:CDS 40.0%
GATGATGTTTAAGCCTGCAA+GGG + chr6_3:32357173-32357192 Msa0948320:CDS 40.0%
GAAATAAACATCTCCCTTGC+AGG - chr6_3:32357189-32357208 None:intergenic 40.0%
GAGATGTTTATTTCCCTACG+AGG + chr6_3:32357195-32357214 Msa0948320:CDS 40.0%
! TCACACAGGTTAGTCATGAA+CGG - chr6_3:32357273-32357292 None:intergenic 40.0%
! GGAACCCACAACATTTTTCT+TGG - chr6_3:32356244-32356263 None:intergenic 40.0%
! GGTACGAGCTTTTCAAAAGA+AGG + chr6_3:32356372-32356391 Msa0948320:CDS 40.0%
TAGGTATGACAGTCTGAGAA+AGG + chr6_3:32356464-32356483 Msa0948320:CDS 40.0%
ATGACAGTCTGAGAAAGGAT+TGG + chr6_3:32356469-32356488 Msa0948320:CDS 40.0%
TTTGGGAGAGAAACTGGATT+AGG + chr6_3:32356510-32356529 Msa0948320:CDS 40.0%
TTGGGAGAGAAACTGGATTA+GGG + chr6_3:32356511-32356530 Msa0948320:CDS 40.0%
CACTACATCCTTGAAAAGTG+TGG - chr6_3:32356740-32356759 None:intergenic 40.0%
!! CACACTTTTCAAGGATGTAG+TGG + chr6_3:32356738-32356757 Msa0948320:CDS 40.0%
TTCAAGGATGTAGTGGCTAA+TGG + chr6_3:32356745-32356764 Msa0948320:CDS 40.0%
GTTGGAGCAACAACTGAATT+TGG + chr6_3:32356886-32356905 Msa0948320:CDS 40.0%
TGCATCTATTGGTGAAGTGA+TGG + chr6_3:32357086-32357105 Msa0948320:CDS 40.0%
! TGATGATGTTTAAGCCTGCA+AGG + chr6_3:32357172-32357191 Msa0948320:CDS 40.0%
GATGATGTTTAAGCCTGCAA+GGG + chr6_3:32357173-32357192 Msa0948320:CDS 40.0%
GAAATAAACATCTCCCTTGC+AGG - chr6_3:32357189-32357208 None:intergenic 40.0%
GAGATGTTTATTTCCCTACG+AGG + chr6_3:32357195-32357214 Msa0948320:CDS 40.0%
! TCACACAGGTTAGTCATGAA+CGG - chr6_3:32357273-32357292 None:intergenic 40.0%
! ATGTTTGGAGCAAGTCTCCA+AGG + chr6_3:32356338-32356357 Msa0948320:CDS 45.0%
! TGTTTGGAGCAAGTCTCCAA+GGG + chr6_3:32356339-32356358 Msa0948320:CDS 45.0%
! CGAGCTTTTCAAAAGAAGGG+TGG + chr6_3:32356376-32356395 Msa0948320:CDS 45.0%
AACCGGACTGAAGTATGAGA+AGG + chr6_3:32356428-32356447 Msa0948320:CDS 45.0%
AGCCTTCTCATACTTCAGTC+CGG - chr6_3:32356433-32356452 None:intergenic 45.0%
TGAGAAAGGATTGGAGAGCA+TGG + chr6_3:32356478-32356497 Msa0948320:CDS 45.0%
! GAGAGAAACTGGATTAGGGT+GGG + chr6_3:32356515-32356534 Msa0948320:CDS 45.0%
! GCTACAACAGTGTTGTTCAC+AGG - chr6_3:32356543-32356562 None:intergenic 45.0%
GTGGTTAACTCATTGGCGAA+TGG - chr6_3:32356721-32356740 None:intergenic 45.0%
! TGGCTAATGGAGAGTACACT+TGG + chr6_3:32356758-32356777 Msa0948320:CDS 45.0%
! GGCTAATGGAGAGTACACTT+GGG + chr6_3:32356759-32356778 Msa0948320:CDS 45.0%
! TGATGATGATGATGAGGCAG+TGG + chr6_3:32356828-32356847 Msa0948320:CDS 45.0%
GTCAAAAGAGTGGTGAGAAG+AGG + chr6_3:32356944-32356963 Msa0948320:CDS 45.0%
! GCTGCTGGTAATGCATCTAT+TGG + chr6_3:32357075-32357094 Msa0948320:CDS 45.0%
AGACTTCATCCATGGTGTGA+AGG - chr6_3:32357116-32357135 None:intergenic 45.0%
TATTTCCCTACGAGGTTCAG+AGG + chr6_3:32357203-32357222 Msa0948320:CDS 45.0%
CAGAGGAGAAGAGGTTGAAT+TGG + chr6_3:32357220-32357239 Msa0948320:CDS 45.0%
! ATGTTTGGAGCAAGTCTCCA+AGG + chr6_3:32356338-32356357 Msa0948320:CDS 45.0%
! TGTTTGGAGCAAGTCTCCAA+GGG + chr6_3:32356339-32356358 Msa0948320:CDS 45.0%
! CGAGCTTTTCAAAAGAAGGG+TGG + chr6_3:32356376-32356395 Msa0948320:CDS 45.0%
AACCGGACTGAAGTATGAGA+AGG + chr6_3:32356428-32356447 Msa0948320:CDS 45.0%
AGCCTTCTCATACTTCAGTC+CGG - chr6_3:32356433-32356452 None:intergenic 45.0%
TGAGAAAGGATTGGAGAGCA+TGG + chr6_3:32356478-32356497 Msa0948320:CDS 45.0%
! GAGAGAAACTGGATTAGGGT+GGG + chr6_3:32356515-32356534 Msa0948320:CDS 45.0%
! GCTACAACAGTGTTGTTCAC+AGG - chr6_3:32356543-32356562 None:intergenic 45.0%
GTGGTTAACTCATTGGCGAA+TGG - chr6_3:32356721-32356740 None:intergenic 45.0%
! TGGCTAATGGAGAGTACACT+TGG + chr6_3:32356758-32356777 Msa0948320:CDS 45.0%
! GGCTAATGGAGAGTACACTT+GGG + chr6_3:32356759-32356778 Msa0948320:CDS 45.0%
! TGATGATGATGATGAGGCAG+TGG + chr6_3:32356828-32356847 Msa0948320:CDS 45.0%
GTCAAAAGAGTGGTGAGAAG+AGG + chr6_3:32356944-32356963 Msa0948320:CDS 45.0%
! GCTGCTGGTAATGCATCTAT+TGG + chr6_3:32357075-32357094 Msa0948320:CDS 45.0%
AGACTTCATCCATGGTGTGA+AGG - chr6_3:32357116-32357135 None:intergenic 45.0%
TATTTCCCTACGAGGTTCAG+AGG + chr6_3:32357203-32357222 Msa0948320:CDS 45.0%
CAGAGGAGAAGAGGTTGAAT+TGG + chr6_3:32357220-32357239 Msa0948320:CDS 45.0%
GTTCCTCCTCACCTAGTGAT+GGG + chr6_3:32356259-32356278 Msa0948320:CDS 50.0%
TTCCTCCTCACCTAGTGATG+GGG + chr6_3:32356260-32356279 Msa0948320:CDS 50.0%
! GGAGAGAAACTGGATTAGGG+TGG + chr6_3:32356514-32356533 Msa0948320:CDS 50.0%
CTGTTGTAGCACCTGATGAG+TGG + chr6_3:32356553-32356572 Msa0948320:CDS 50.0%
TTGTAGCACCTGATGAGTGG+TGG + chr6_3:32356556-32356575 Msa0948320:CDS 50.0%
TGTAGCACCTGATGAGTGGT+GGG + chr6_3:32356557-32356576 Msa0948320:CDS 50.0%
TACACTTGGGCACCATCATG+TGG + chr6_3:32356772-32356791 Msa0948320:CDS 50.0%
ACACTTGGGCACCATCATGT+GGG + chr6_3:32356773-32356792 Msa0948320:CDS 50.0%
GATGGCAATACCCCACATGA+TGG - chr6_3:32356787-32356806 None:intergenic 50.0%
GATAGCGAGGATGCAAGTGT+TGG + chr6_3:32356868-32356887 Msa0948320:CDS 50.0%
CTTCTCCTCTGAACCTCGTA+GGG - chr6_3:32357211-32357230 None:intergenic 50.0%
TCTTCTCCTCTGAACCTCGT+AGG - chr6_3:32357212-32357231 None:intergenic 50.0%
TACGAGGTTCAGAGGAGAAG+AGG + chr6_3:32357211-32357230 Msa0948320:CDS 50.0%
! GGTTAGTCATGAACGGCAGT+GGG - chr6_3:32357266-32357285 None:intergenic 50.0%
! AGGTTAGTCATGAACGGCAG+TGG - chr6_3:32357267-32357286 None:intergenic 50.0%
GTTCCTCCTCACCTAGTGAT+GGG + chr6_3:32356259-32356278 Msa0948320:CDS 50.0%
TTCCTCCTCACCTAGTGATG+GGG + chr6_3:32356260-32356279 Msa0948320:CDS 50.0%
! GGAGAGAAACTGGATTAGGG+TGG + chr6_3:32356514-32356533 Msa0948320:CDS 50.0%
CTGTTGTAGCACCTGATGAG+TGG + chr6_3:32356553-32356572 Msa0948320:CDS 50.0%
TTGTAGCACCTGATGAGTGG+TGG + chr6_3:32356556-32356575 Msa0948320:CDS 50.0%
TGTAGCACCTGATGAGTGGT+GGG + chr6_3:32356557-32356576 Msa0948320:CDS 50.0%
TACACTTGGGCACCATCATG+TGG + chr6_3:32356772-32356791 Msa0948320:CDS 50.0%
ACACTTGGGCACCATCATGT+GGG + chr6_3:32356773-32356792 Msa0948320:CDS 50.0%
GATGGCAATACCCCACATGA+TGG - chr6_3:32356787-32356806 None:intergenic 50.0%
GATAGCGAGGATGCAAGTGT+TGG + chr6_3:32356868-32356887 Msa0948320:CDS 50.0%
CTTCTCCTCTGAACCTCGTA+GGG - chr6_3:32357211-32357230 None:intergenic 50.0%
TCTTCTCCTCTGAACCTCGT+AGG - chr6_3:32357212-32357231 None:intergenic 50.0%
TACGAGGTTCAGAGGAGAAG+AGG + chr6_3:32357211-32357230 Msa0948320:CDS 50.0%
! GGTTAGTCATGAACGGCAGT+GGG - chr6_3:32357266-32357285 None:intergenic 50.0%
! AGGTTAGTCATGAACGGCAG+TGG - chr6_3:32357267-32357286 None:intergenic 50.0%
GGTTCCTCCTCACCTAGTGA+TGG + chr6_3:32356258-32356277 Msa0948320:CDS 55.0%
TCCTCCTCACCTAGTGATGG+GGG + chr6_3:32356261-32356280 Msa0948320:CDS 55.0%
! GTTTTCTGCCCCCCATCACT+AGG - chr6_3:32356273-32356292 None:intergenic 55.0%
GTCTCCAAGGGAGAACGTGT+TGG + chr6_3:32356351-32356370 Msa0948320:CDS 55.0%
CGTACCAACACGTTCTCCCT+TGG - chr6_3:32356358-32356377 None:intergenic 55.0%
TTGGTCTCCCACCACTCATC+AGG - chr6_3:32356567-32356586 None:intergenic 55.0%
! GTGGTGGGAGACCAAACAAC+TGG + chr6_3:32356572-32356591 Msa0948320:CDS 55.0%
CACTTGGGCACCATCATGTG+GGG + chr6_3:32356774-32356793 Msa0948320:CDS 55.0%
GATGAGGCAGTGGCTGTAGA+AGG + chr6_3:32356838-32356857 Msa0948320:CDS 55.0%
GCAGTGGCTGTAGAAGGATC+TGG + chr6_3:32356844-32356863 Msa0948320:CDS 55.0%
AGAAGGATCTGGCGATAGCG+AGG + chr6_3:32356855-32356874 Msa0948320:CDS 55.0%
CGTTCTCGCAATGATGCTGC+TGG + chr6_3:32357060-32357079 Msa0948320:CDS 55.0%
GATGGCTGACCTTCACACCA+TGG + chr6_3:32357104-32357123 Msa0948320:CDS 55.0%
GGTTCCTCCTCACCTAGTGA+TGG + chr6_3:32356258-32356277 Msa0948320:CDS 55.0%
TCCTCCTCACCTAGTGATGG+GGG + chr6_3:32356261-32356280 Msa0948320:CDS 55.0%
! GTTTTCTGCCCCCCATCACT+AGG - chr6_3:32356273-32356292 None:intergenic 55.0%
GTCTCCAAGGGAGAACGTGT+TGG + chr6_3:32356351-32356370 Msa0948320:CDS 55.0%
CGTACCAACACGTTCTCCCT+TGG - chr6_3:32356358-32356377 None:intergenic 55.0%
TTGGTCTCCCACCACTCATC+AGG - chr6_3:32356567-32356586 None:intergenic 55.0%
! GTGGTGGGAGACCAAACAAC+TGG + chr6_3:32356572-32356591 Msa0948320:CDS 55.0%
CACTTGGGCACCATCATGTG+GGG + chr6_3:32356774-32356793 Msa0948320:CDS 55.0%
GATGAGGCAGTGGCTGTAGA+AGG + chr6_3:32356838-32356857 Msa0948320:CDS 55.0%
GCAGTGGCTGTAGAAGGATC+TGG + chr6_3:32356844-32356863 Msa0948320:CDS 55.0%
AGAAGGATCTGGCGATAGCG+AGG + chr6_3:32356855-32356874 Msa0948320:CDS 55.0%
CGTTCTCGCAATGATGCTGC+TGG + chr6_3:32357060-32357079 Msa0948320:CDS 55.0%
GATGGCTGACCTTCACACCA+TGG + chr6_3:32357104-32357123 Msa0948320:CDS 55.0%
! CCTCCTCACCTAGTGATGGG+GGG + chr6_3:32356262-32356281 Msa0948320:CDS 60.0%
! CCTCCTCACCTAGTGATGGG+GGG + chr6_3:32356262-32356281 Msa0948320:CDS 60.0%
CCCCCCATCACTAGGTGAGG+AGG - chr6_3:32356265-32356284 None:intergenic 65.0%
CTGCCCCCCATCACTAGGTG+AGG - chr6_3:32356268-32356287 None:intergenic 65.0%
CCCCCCATCACTAGGTGAGG+AGG - chr6_3:32356265-32356284 None:intergenic 65.0%
CTGCCCCCCATCACTAGGTG+AGG - chr6_3:32356268-32356287 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 32356231 32357296 32356231 ID=Msa0948320;Name=Msa0948320
chr6_3 mRNA 32356231 32357296 32356231 ID=Msa0948320-mRNA-1;Parent=Msa0948320;Name=Msa0948320-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|326
chr6_3 exon 32356231 32356593 32356231 ID=Msa0948320-mRNA-1:exon:8433;Parent=Msa0948320-mRNA-1
chr6_3 exon 32356679 32357296 32356679 ID=Msa0948320-mRNA-1:exon:8434;Parent=Msa0948320-mRNA-1
chr6_3 CDS 32356231 32356593 32356231 ID=Msa0948320-mRNA-1:cds;Parent=Msa0948320-mRNA-1
chr6_3 CDS 32356679 32357296 32356679 ID=Msa0948320-mRNA-1:cds;Parent=Msa0948320-mRNA-1
Gene Sequence

>Msa0948320

ATGGTGAATACCAAGAAAAATGTTGTGGGTTCCTCCTCACCTAGTGATGGGGGGCAGAAAACAAAAGCTATTTGGGATTATAAGTCAACTGAAAACTTTGTGAAAGCATGTTTGGAGCAAGTCTCCAAGGGAGAACGTGTTGGTACGAGCTTTTCAAAAGAAGGGTGGACAAATATTAGGGTCCGATTTCATAATTTAACCGGACTGAAGTATGAGAAGGCTCAACTAAAGAATAGGTATGACAGTCTGAGAAAGGATTGGAGAGCATGGTATAACTTATTTGGGAGAGAAACTGGATTAGGGTGGGATCCTGTGAACAACACTGTTGTAGCACCTGATGAGTGGTGGGAGACCAAACAACTGGAAAACCCTCTTTATGAAAAATTTAGGAACAAGGGGCTTCCATTCGCCAATGAGTTAACCACACTTTTCAAGGATGTAGTGGCTAATGGAGAGTACACTTGGGCACCATCATGTGGGGTATTGCCATCTGTGTTTGAAAATGATGATAATGATGATGATGATGAGGCAGTGGCTGTAGAAGGATCTGGCGATAGCGAGGATGCAAGTGTTGGAGCAACAACTGAATTTGGAAATATTGGGTTGAATTCTTCACAAAAAACTGATGGTCAAAAGAGTGGTGAGAAGAGGAAAAGAGATGTTAGAGCAGACAAGCCAAGTAAGAAAAAAGCAAGTGCATCATCAAAGATAGCTGAAGCTGTTAGTTTAATTGCAGAGACATGTCGTTCTCGCAATGATGCTGCTGGTAATGCATCTATTGGTGAAGTGATGGCTGACCTTCACACCATGGATGAAGTCTCAAATGATCTTTATTTGCATGCTCGGTGTTGCAACTTGATGATGTTTAAGCCTGCAAGGGAGATGTTTATTTCCCTACGAGGTTCAGAGGAGAAGAGGTTGAATTGGCTTAAGCATACAATTGATAACCCACTGCCGTTCATGACTAACCTGTGTGACTAG

Protein sequence

>Msa0948320

MVNTKKNVVGSSSPSDGGQKTKAIWDYKSTENFVKACLEQVSKGERVGTSFSKEGWTNIRVRFHNLTGLKYEKAQLKNRYDSLRKDWRAWYNLFGRETGLGWDPVNNTVVAPDEWWETKQLENPLYEKFRNKGLPFANELTTLFKDVVANGEYTWAPSCGVLPSVFENDDNDDDDEAVAVEGSGDSEDASVGATTEFGNIGLNSSQKTDGQKSGEKRKRDVRADKPSKKKASASSKIAEAVSLIAETCRSRNDAAGNASIGEVMADLHTMDEVSNDLYLHARCCNLMMFKPAREMFISLRGSEEKRLNWLKHTIDNPLPFMTNLCD*