AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0447370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0447370 MtrunA17_Chr3g0119371 94.872 546 7 1 1 546 1 525 0.0 1079
Msa0447370 MtrunA17_Chr5g0439311 78.748 527 89 3 21 546 12 516 0.0 874
Msa0447370 MtrunA17_Chr8g0388051 59.138 487 176 2 40 526 28 491 0.0 618
Msa0447370 MtrunA17_Chr4g0038131 58.282 489 180 4 39 526 27 492 0.0 587
Msa0447370 MtrunA17_Chr5g0444721 66.146 384 108 2 144 526 202 564 0.0 528
Msa0447370 MtrunA17_Chr5g0444721 62.428 173 60 2 22 190 16 187 3.71e-64 219
Msa0447370 MtrunA17_Chr1g0164201 49.109 505 224 7 23 524 5 479 1.59e-164 476
Msa0447370 MtrunA17_Chr1g0195271 47.162 511 227 7 15 524 26 494 9.47e-152 444
Msa0447370 MtrunA17_Chr5g0397201 46.894 499 225 7 36 531 36 497 2.74e-150 441
Msa0447370 MtrunA17_Chr8g0391391 47.251 491 225 8 40 526 30 490 5.59e-150 439
Msa0447370 MtrunA17_Chr3g0119821 47.239 489 226 8 40 526 35 493 3.91e-149 437
Msa0447370 MtrunA17_Chr3g0145261 46.436 491 231 6 40 527 24 485 1.05e-147 433
Msa0447370 MtrunA17_Chr4g0018301 43.086 499 248 7 31 528 36 499 1.09e-139 413
Msa0447370 MtrunA17_Chr3g0086311 44.380 516 242 7 23 530 5 483 2.27e-139 412
Msa0447370 MtrunA17_Chr3g0080171 45.194 489 233 7 40 526 25 480 1.62e-137 407
Msa0447370 MtrunA17_Chr4g0018361 44.015 518 239 11 25 526 7 489 7.04e-135 400
Msa0447370 MtrunA17_Chr3g0142501 42.127 489 254 9 41 527 58 519 8.47e-124 374
Msa0447370 MtrunA17_Chr8g0372031 42.387 486 251 11 41 524 64 522 3.37e-118 359
Msa0447370 MtrunA17_Chr5g0397181 43.488 430 203 7 101 527 1 393 2.96e-117 352
Msa0447370 MtrunA17_Chr3g0136381 44.784 393 181 5 31 423 21 377 1.68e-109 333
Msa0447370 MtrunA17_Chr2g0291461 41.055 531 251 17 40 544 111 605 1.19e-101 319
Msa0447370 MtrunA17_Chr3g0120661 38.142 506 258 16 40 523 116 588 7.80e-92 294
Msa0447370 MtrunA17_Chr3g0126111 35.420 559 277 18 19 531 68 588 4.03e-90 288
Msa0447370 MtrunA17_Chr4g0018341 38.065 310 158 6 220 528 2 278 2.12e-65 214
Msa0447370 MtrunA17_Chr4g0018351 54.348 184 82 1 38 221 28 209 1.26e-62 204
Msa0447370 MtrunA17_Chr1g0164181 52.973 185 86 1 82 266 3 186 1.23e-52 182
Msa0447370 MtrunA17_Chr1g0164181 47.826 161 83 1 364 524 170 329 1.16e-47 169
Msa0447370 MtrunA17_Chr7g0269571 44.578 166 80 2 370 524 43 207 1.15e-42 152
Msa0447370 MtrunA17_Chr4g0022271 43.571 140 74 1 370 509 20 154 5.13e-34 127
Msa0447370 MtrunA17_Chr4g0072811 41.216 148 82 4 377 523 19 162 2.01e-28 112
Msa0447370 MtrunA17_Chr3g0136371 46.739 92 48 1 423 514 1 91 3.57e-23 94.4
Msa0447370 MtrunA17_Chr5g0397171 59.524 42 17 0 39 80 40 81 1.19e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0447370 AT2G32990.1 72.179 514 112 2 22 525 11 503 0.0 779
Msa0447370 AT1G64390.1 59.754 487 173 2 40 526 25 488 0.0 611
Msa0447370 AT4G11050.1 58.811 488 178 2 40 527 26 490 0.0 602
Msa0447370 AT4G11050.3 58.811 488 178 2 40 527 26 490 0.0 602
Msa0447370 AT4G11050.2 58.811 488 178 2 40 527 26 490 0.0 599
Msa0447370 AT1G48930.1 56.057 487 191 3 39 525 29 492 0.0 539
Msa0447370 AT2G44550.1 49.400 500 223 5 25 524 18 487 9.23e-164 474
Msa0447370 AT2G44540.1 48.708 503 227 6 22 524 17 488 4.18e-159 463
Msa0447370 AT2G44560.1 49.301 501 224 6 24 524 18 488 3.68e-157 458
Msa0447370 AT2G44570.1 46.614 502 238 6 24 524 17 489 9.18e-156 454
Msa0447370 AT4G02290.1 48.361 488 221 7 40 526 52 509 1.46e-150 442
Msa0447370 AT1G02800.1 48.971 486 215 6 40 524 43 496 6.57e-150 440
Msa0447370 AT1G70710.1 45.635 504 243 6 24 526 12 485 9.36e-149 436
Msa0447370 AT4G39010.1 45.621 491 234 8 40 526 29 490 1.95e-145 428
Msa0447370 AT1G23210.1 46.311 488 231 7 40 526 28 485 1.04e-143 423
Msa0447370 AT4G23560.1 45.759 507 234 8 24 527 7 475 2.79e-143 422
Msa0447370 AT4G09740.1 45.365 507 236 7 24 527 7 475 3.38e-143 422
Msa0447370 AT3G43860.2 44.422 502 241 8 26 526 19 483 7.40e-138 408
Msa0447370 AT3G43860.1 44.422 502 241 8 26 526 19 483 7.40e-138 408
Msa0447370 AT1G22880.1 44.950 505 242 9 24 526 8 478 2.81e-137 407
Msa0447370 AT1G71380.1 44.291 508 244 10 24 526 5 478 1.13e-135 403
Msa0447370 AT1G19940.2 45.756 483 231 8 40 521 48 500 3.15e-134 400
Msa0447370 AT1G19940.1 45.756 483 231 8 40 521 48 500 3.15e-134 400
Msa0447370 AT4G39000.1 43.952 496 245 7 40 531 25 491 8.20e-134 398
Msa0447370 AT1G75680.1 45.607 478 229 8 41 517 58 505 2.31e-129 388
Msa0447370 AT4G38990.2 41.879 511 259 9 25 526 8 489 1.51e-124 374
Msa0447370 AT4G02290.2 45.667 427 201 7 101 526 1 397 2.57e-117 353
Msa0447370 AT2G44570.2 43.510 416 205 6 24 438 17 403 1.44e-110 335
Msa0447370 AT1G22880.2 42.991 428 208 9 101 526 1 394 4.43e-109 332
Msa0447370 AT4G39010.2 44.444 387 183 7 40 422 29 387 1.35e-107 327
Msa0447370 AT1G19940.3 43.636 385 191 6 40 423 48 407 7.34e-96 298
Msa0447370 AT5G49720.1 41.569 510 238 18 40 523 108 583 6.62e-95 302
Msa0447370 AT4G24260.1 39.764 508 250 15 40 523 108 583 2.41e-85 277
Msa0447370 AT1G65610.1 34.690 516 283 16 40 534 116 598 5.39e-84 273
Msa0447370 AT4G38990.1 40.633 379 174 6 25 402 8 336 1.18e-80 256
Msa0447370 AT1G22880.3 45.559 349 155 8 24 370 8 323 2.36e-79 253
Msa0447370 AT4G24260.3 37.745 408 203 13 40 423 108 488 2.34e-53 189
Msa0447370 AT4G24260.2 39.316 351 162 11 40 363 108 434 2.34e-51 182

Find 127 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACAAGTTGATTACATTT+TGG 0.156175 3_3:-25226140 Msa0447370:CDS
AGAACCAAATCCTAATATTT+TGG 0.167708 3_3:-25225966 Msa0447370:CDS
CATACAACCAACGTGTTAAT+TGG 0.167826 3_3:-25229610 Msa0447370:CDS
GAAAATACATTCTTTAAAAT+AGG 0.186741 3_3:+25225686 None:intergenic
AAATATTAGGATTTGGTTCT+TGG 0.200576 3_3:+25225969 None:intergenic
AAAGGTATTTGGTGCAAATT+TGG 0.202827 3_3:+25225549 None:intergenic
ATGTAATGGAAGCAATTAAA+TGG 0.203237 3_3:-25229304 Msa0447370:CDS
AACTCATGTTAAGTGGATTT+TGG 0.205279 3_3:+25226116 None:intergenic
ACCTCTATGATGCACCCTTT+TGG 0.242199 3_3:+25226066 None:intergenic
ATGAGTTACTTAGTGGGATA+TGG 0.273448 3_3:-25226100 Msa0447370:CDS
GCAGGTGATCATGTGAAATT+TGG 0.274678 3_3:-25229413 Msa0447370:CDS
TACTTTGAAGCACAACGTTC+TGG 0.276345 3_3:-25229641 Msa0447370:CDS
ATTGTGCAGTTATTTGAGTT+TGG 0.280930 3_3:-25228020 Msa0447370:intron
AAAATACATTCTTTAAAATA+GGG 0.283671 3_3:+25225687 None:intergenic
TTGTGCAGTTATTTGAGTTT+GGG 0.294397 3_3:-25228019 Msa0447370:intron
ATTAAAGTGGTCTGGCTATA+TGG 0.297747 3_3:-25227329 Msa0447370:CDS
ACCTCTGCCCACAACACATT+TGG 0.300565 3_3:+25229248 None:intergenic
CCAACCAAAATATTAGGATT+TGG 0.302553 3_3:+25225962 None:intergenic
ATATATAGAGAGTATTTAAA+AGG 0.306750 3_3:+25225766 None:intergenic
GTTAATTGGCGTCATCATTC+TGG 0.309546 3_3:-25229596 Msa0447370:CDS
AAAGCTCCAACCAAAATATT+AGG 0.310755 3_3:+25225956 None:intergenic
CAGCTGCTTCCATTGTGTTT+AGG 0.320538 3_3:-25228768 Msa0447370:CDS
ACCATTGAAACTTCAACATT+TGG 0.325831 3_3:+25227301 None:intergenic
TCAAAATTGTCTAGATTATC+AGG 0.328331 3_3:+25225923 None:intergenic
AGAGAGAATAAAGGGTTCAT+AGG 0.328810 3_3:-25226025 Msa0447370:CDS
ATTTCTAATGCTCATACATT+TGG 0.331259 3_3:-25227852 Msa0447370:CDS
GCACACAAGGGTATGATAAT+TGG 0.347724 3_3:-25226000 Msa0447370:CDS
CAATTAACACGTTGGTTGTA+TGG 0.354636 3_3:+25229611 None:intergenic
CATGGAGTGCTATTGAGTTT+AGG 0.363527 3_3:-25229358 Msa0447370:CDS
GTGACAATGATGTTTAAATC+TGG 0.367337 3_3:+25229745 None:intergenic
GCTCATACATTTGGTGGTAT+TGG 0.372035 3_3:-25227843 Msa0447370:CDS
TAAATTTGTTAATATTATAG+TGG 0.388889 3_3:-25225645 Msa0447370:three_prime_UTR
TTTCAGGTGGATTTGGTTGG+AGG 0.401221 3_3:-25229446 Msa0447370:intron
TGTAATGGAAGCAATTAAAT+GGG 0.406228 3_3:-25229303 Msa0447370:CDS
CCTCTGCCCACAACACATTT+GGG 0.407042 3_3:+25229249 None:intergenic
CAAAAGATCAATTGCCAAGA+TGG 0.412945 3_3:-25226199 Msa0447370:CDS
GTATCATATAGAGAGAATAA+AGG 0.414088 3_3:-25226034 Msa0447370:CDS
CTGGACGTTGCCAACAATAA+TGG 0.415828 3_3:+25228878 None:intergenic
CTTGAGGTTGTCATGTCCTC+TGG 0.417866 3_3:+25228859 None:intergenic
GTCAAAATATTCTTGTTTGT+CGG 0.429086 3_3:+25227881 None:intergenic
AAGATAGATGAGAAGAATCC+AGG 0.433832 3_3:-25228826 Msa0447370:CDS
TTCAGGTGGATTTGGTTGGA+GGG 0.437613 3_3:-25229445 Msa0447370:intron
TCATGCAAAGAGGGAATAGA+AGG 0.439518 3_3:-25225823 Msa0447370:CDS
ATCCCAGCTGAATTCTGTTA+TGG 0.440268 3_3:+25227815 None:intergenic
ACTTTGAAGCACAACGTTCT+GGG 0.441438 3_3:-25229640 Msa0447370:CDS
GGGAAATATGATGGAAGTGT+TGG 0.451425 3_3:-25227984 Msa0447370:CDS
TATCATATAGAGAGAATAAA+GGG 0.456692 3_3:-25226033 Msa0447370:CDS
TCTAATGCTCATACATTTGG+TGG 0.457457 3_3:-25227849 Msa0447370:CDS
AGCTGGGATGTTAAGTATGC+TGG 0.465855 3_3:-25227801 Msa0447370:CDS
CAAAATTGAGAATTTCATCA+TGG 0.467727 3_3:+25226167 None:intergenic
ATGGGCCTAAGTACCCCAAA+AGG 0.469761 3_3:-25226081 Msa0447370:CDS
ATACATTTGGTGGTATTGGT+TGG 0.472675 3_3:-25227839 Msa0447370:CDS
TACTAGCCCAAATGTGTTGT+GGG 0.473525 3_3:-25229255 Msa0447370:CDS
AGGCAAGAAATTGTTGAAGC+TGG 0.479140 3_3:-25229338 Msa0447370:CDS
GCCAAATGTTGAAGTTTCAA+TGG 0.480042 3_3:-25227302 Msa0447370:intron
CCCAAATGTGTTGTGGGCAG+AGG 0.481112 3_3:-25229249 Msa0447370:intron
ACAGTTCAATTAAAGTGGTC+TGG 0.484780 3_3:-25227337 Msa0447370:CDS
ACTAAGTAACTCATGTTAAG+TGG 0.486492 3_3:+25226109 None:intergenic
GGTCCATAACAGAATTCAGC+TGG 0.486609 3_3:-25227818 Msa0447370:CDS
ACTTAACATGAGTTACTTAG+TGG 0.491572 3_3:-25226107 Msa0447370:CDS
TGAGTTACTTAGTGGGATAT+GGG 0.492298 3_3:-25226099 Msa0447370:CDS
TTGGTTGGAGCTTTGGTAGG+AGG 0.493848 3_3:-25225947 Msa0447370:CDS
TGGAGAAACTGCTGCAGCTA+TGG 0.496286 3_3:-25228791 Msa0447370:CDS
CATCATTCTGGTCTTACAGA+TGG 0.500607 3_3:-25229584 Msa0447370:CDS
GAAGAATCCAGGTTCAGATC+TGG 0.506230 3_3:-25228815 Msa0447370:CDS
ATTGTTGAAGCTGGTGAACT+TGG 0.513050 3_3:-25229329 Msa0447370:CDS
TTACCTTTGATGCTAAAACT+TGG 0.515672 3_3:+25227775 None:intergenic
CTTACAGATGGTTTAGAACA+AGG 0.516101 3_3:-25229572 Msa0447370:CDS
ATAATCAAAAGATTGTGTTA+TGG 0.516983 3_3:+25229691 None:intergenic
TGTGAAATTTGGTTTACCAA+TGG 0.517414 3_3:-25229402 Msa0447370:CDS
CATGGCTCACAATCCCATCT+TGG 0.518926 3_3:+25226185 None:intergenic
AGCTACTATGCGTCGGTGAG+TGG 0.518978 3_3:-25227951 Msa0447370:CDS
GAGAGAATAAAGGGTTCATA+GGG 0.518983 3_3:-25226024 Msa0447370:CDS
TTGCAAAATTCATGCAAAGA+GGG 0.519154 3_3:-25225832 Msa0447370:CDS
AAAAGATCAATTGCCAAGAT+GGG 0.520703 3_3:-25226198 Msa0447370:CDS
CTATCACAGTTCAATTAAAG+TGG 0.522737 3_3:-25227342 Msa0447370:CDS
ATATAATACTGCACCATTAG+TGG 0.523912 3_3:-25225861 Msa0447370:CDS
AAATACAGAGGGAAATATGA+TGG 0.525154 3_3:-25227993 Msa0447370:CDS
GAGACACAGACCATTATTGT+TGG 0.526224 3_3:-25228888 Msa0447370:CDS
CAAGGGTATGATAATTGGTA+TGG 0.527762 3_3:-25225995 Msa0447370:CDS
TGTGCAGTTATTTGAGTTTG+GGG 0.529149 3_3:-25228018 Msa0447370:intron
AAATACATTCTTTAAAATAG+GGG 0.535983 3_3:+25225688 None:intergenic
AAAATATTCTTGTTTGTCGG+TGG 0.547238 3_3:+25227884 None:intergenic
AAAATTCAAGAAAGAAAGTG+AGG 0.550203 3_3:+25229867 None:intergenic
TTTGCAAAATTCATGCAAAG+AGG 0.550554 3_3:-25225833 Msa0447370:CDS
GATACATGGATGAGTTATTG+TGG 0.552659 3_3:-25227929 Msa0447370:CDS
TATAATACTGCACCATTAGT+GGG 0.560164 3_3:-25225860 Msa0447370:CDS
GTTGGAGGGTACTATGATGC+AGG 0.563279 3_3:-25229431 Msa0447370:CDS
TGACAATGATGTTTAAATCT+GGG 0.565379 3_3:+25229746 None:intergenic
AATACATTCTTTAAAATAGG+GGG 0.565425 3_3:+25225689 None:intergenic
TGCGTCGGTGAGTGGATACA+TGG 0.568122 3_3:-25227943 Msa0447370:CDS
AATGTAATCAACTTGTGACT+TGG 0.573884 3_3:+25226144 None:intergenic
GGGTTCATAGGGTGCACACA+AGG 0.574402 3_3:-25226013 Msa0447370:CDS
ATACTAGCCCAAATGTGTTG+TGG 0.577675 3_3:-25229256 Msa0447370:CDS
TCTCCAGCCAGATCTGAACC+TGG 0.578429 3_3:+25228808 None:intergenic
ATACATGGATGAGTTATTGT+GGG 0.579757 3_3:-25227928 Msa0447370:CDS
TACAGATGGTTTAGAACAAG+GGG 0.583836 3_3:-25229570 Msa0447370:intron
GCAAAGAGGGAATAGAAGGT+TGG 0.590189 3_3:-25225819 Msa0447370:CDS
TATCTTAAAAGCTTGTCTTG+AGG 0.590517 3_3:+25228843 None:intergenic
AGTTATTGTGGGGAGCTATG+TGG 0.591433 3_3:-25227917 Msa0447370:CDS
AATCCAGGTTCAGATCTGGC+TGG 0.593866 3_3:-25228811 Msa0447370:CDS
CTTAACATGAGTTACTTAGT+GGG 0.597597 3_3:-25226106 Msa0447370:CDS
ATTCTCTCTATATGATACAA+TGG 0.597953 3_3:+25226039 None:intergenic
TGGTGAACTTGGTCATGTAA+TGG 0.602665 3_3:-25229318 Msa0447370:CDS
TTACTGTCACAATGTTGTCA+TGG 0.603705 3_3:-25229376 Msa0447370:CDS
TGGGCCTAAGTACCCCAAAA+GGG 0.608177 3_3:-25226080 Msa0447370:CDS
CTTACATAGAGTAATCCAGC+TGG 0.611840 3_3:+25226301 None:intergenic
TTACAGATGGTTTAGAACAA+GGG 0.612255 3_3:-25229571 Msa0447370:CDS
AATGTGGAAAGAACACCAGC+TGG 0.616199 3_3:-25226316 Msa0447370:CDS
CCCAAAAGGGTGCATCATAG+AGG 0.625621 3_3:-25226067 Msa0447370:CDS
AGTTTGGGGACAAATACAGA+GGG 0.630720 3_3:-25228004 Msa0447370:CDS
ATTGTGACAGTAAACGCCAT+TGG 0.633379 3_3:+25229386 None:intergenic
TTACTACTACCTGCTGAGCA+TGG 0.641231 3_3:+25228710 None:intergenic
GTCCATAACAGAATTCAGCT+GGG 0.643895 3_3:-25227817 Msa0447370:CDS
GATGACGCCAATTAACACGT+TGG 0.651812 3_3:+25229603 None:intergenic
TTATTGTTGGCAACGTCCAG+AGG 0.652974 3_3:-25228875 Msa0447370:CDS
AGTGAAGAGCTACTATGCGT+CGG 0.655502 3_3:-25227958 Msa0447370:CDS
AAAAGTAGCTGAGAATAATG+TGG 0.661774 3_3:+25228736 None:intergenic
GAGTTTGGGGACAAATACAG+AGG 0.667296 3_3:-25228005 Msa0447370:CDS
GAACAATTATGTGCAAACTG+AGG 0.668349 3_3:-25225891 Msa0447370:CDS
GTAATGGAAGCAATTAAATG+GGG 0.669304 3_3:-25229302 Msa0447370:CDS
AAACAATGGCAGCAGCAATG+TGG 0.670730 3_3:-25226332 Msa0447370:CDS
GGTTCATAGGGTGCACACAA+GGG 0.675227 3_3:-25226012 Msa0447370:CDS
AAATTCAAGAAAGAAAGTGA+GGG 0.678743 3_3:+25229868 None:intergenic
TTGAAGCACAACGTTCTGGG+AGG 0.691689 3_3:-25229637 Msa0447370:CDS
GATTACTCTATGTAAGACAG+TGG 0.704386 3_3:-25226294 Msa0447370:CDS
TACATGGATGAGTTATTGTG+GGG 0.766782 3_3:-25227927 Msa0447370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGAATAATTTATTATGTT+TGG - chr3_3:25226850-25226869 Msa0447370:intron 10.0%
!!! TACTAATATTTTTACTTAAT+TGG + chr3_3:25227352-25227371 None:intergenic 10.0%
!!! AAAATACATTCTTTAAAATA+GGG + chr3_3:25229789-25229808 None:intergenic 10.0%
!!! TAAATTTGTTAATATTATAG+TGG - chr3_3:25229828-25229847 Msa0447370:five_prime_UTR 10.0%
!!! AAAGTTGAGATTTTTATTTT+TGG - chr3_3:25225994-25226013 Msa0447370:CDS 15.0%
!!! AAGTTGAGATTTTTATTTTT+GGG - chr3_3:25225995-25226014 Msa0447370:CDS 15.0%
!! TATTAAAGTATGTAAAACAA+GGG - chr3_3:25226928-25226947 Msa0447370:intron 15.0%
!!! TTTTGATTGTGTTTTTTTTT+TGG - chr3_3:25227033-25227052 Msa0447370:intron 15.0%
!! TAAAATACAAACAAAACAAA+AGG - chr3_3:25227718-25227737 Msa0447370:intron 15.0%
!! AAAATACAAACAAAACAAAA+GGG - chr3_3:25227719-25227738 Msa0447370:intron 15.0%
!!! TATCATTTTATTTGATTTGA+TGG - chr3_3:25228023-25228042 Msa0447370:intron 15.0%
!!! ATATATAGAGAGTATTTAAA+AGG + chr3_3:25229710-25229729 None:intergenic 15.0%
!!! AAATACATTCTTTAAAATAG+GGG + chr3_3:25229788-25229807 None:intergenic 15.0%
!!! GAAAATACATTCTTTAAAAT+AGG + chr3_3:25229790-25229809 None:intergenic 15.0%
!!! AAAAAAACTTGGTACTTTTT+AGG + chr3_3:25225641-25225660 None:intergenic 20.0%
!!! AAAAGTACCAAGTTTTTTTT+AGG - chr3_3:25225642-25225661 Msa0447370:three_prime_UTR 20.0%
!! ATAATCAAAAGATTGTGTTA+TGG + chr3_3:25225785-25225804 None:intergenic 20.0%
!!! TTTCATTTTCTTGATTTTGA+TGG - chr3_3:25225947-25225966 Msa0447370:CDS 20.0%
!!! GAAACAAAATTCTGAAATTA+AGG - chr3_3:25226540-25226559 Msa0447370:intron 20.0%
!!! GAAATTAAGGTTTTTTACTT+AGG - chr3_3:25226553-25226572 Msa0447370:intron 20.0%
!! GTATTAAAGTATGTAAAACA+AGG - chr3_3:25226927-25226946 Msa0447370:intron 20.0%
!!! AAGATTGTAAATAGCTATTT+TGG - chr3_3:25226952-25226971 Msa0447370:intron 20.0%
!!! ACTACAGTAAATAGTTATTT+TGG + chr3_3:25227209-25227228 None:intergenic 20.0%
!!! TACTACACTATCAATTTTAA+AGG - chr3_3:25227282-25227301 Msa0447370:intron 20.0%
!!! TTCAAACATGTCAATTTTAT+AGG - chr3_3:25227796-25227815 Msa0447370:CDS 20.0%
!!! TTCTAGTATTTTATTTGTGT+TGG - chr3_3:25227867-25227886 Msa0447370:CDS 20.0%
!! TGAAGTCAAAAATAAAATGA+TGG - chr3_3:25227949-25227968 Msa0447370:CDS 20.0%
!! GAAGTCAAAAATAAAATGAT+GGG - chr3_3:25227950-25227969 Msa0447370:CDS 20.0%
!!! ACTTTTGAAACTAAAGTAAA+AGG + chr3_3:25227999-25228018 None:intergenic 20.0%
!! GACTATATAGCTAATATAAA+TGG - chr3_3:25228219-25228238 Msa0447370:intron 20.0%
!! TTTAGAAGAAGAAAATTTCA+GGG - chr3_3:25228655-25228674 Msa0447370:intron 20.0%
!! AAAAATAACAAATGGATCAA+GGG + chr3_3:25228763-25228782 None:intergenic 20.0%
!! AAAAAATAACAAATGGATCA+AGG + chr3_3:25228764-25228783 None:intergenic 20.0%
!!! TTGATCCATTTGTTATTTTT+TGG - chr3_3:25228763-25228782 Msa0447370:CDS 20.0%
!! ACTATCCAAAAAATAACAAA+TGG + chr3_3:25228771-25228790 None:intergenic 20.0%
!!! ATTTGTTATTTTTTGGATAG+TGG - chr3_3:25228770-25228789 Msa0447370:CDS 20.0%
!!! TTTGTTATTTTTTGGATAGT+GGG - chr3_3:25228771-25228790 Msa0447370:CDS 20.0%
!! AAAAGAACAACAAATATTTC+TGG - chr3_3:25228878-25228897 Msa0447370:CDS 20.0%
!! TACTAGTAAACTTTAACATA+AGG + chr3_3:25228978-25228997 None:intergenic 20.0%
!! TATCATATAGAGAGAATAAA+GGG - chr3_3:25229440-25229459 Msa0447370:CDS 20.0%
!!! AATACATTCTTTAAAATAGG+GGG + chr3_3:25229787-25229806 None:intergenic 20.0%
! AAATTCAAGAAAGAAAGTGA+GGG + chr3_3:25225608-25225627 None:intergenic 25.0%
! AAAATTCAAGAAAGAAAGTG+AGG + chr3_3:25225609-25225628 None:intergenic 25.0%
! TGACAATGATGTTTAAATCT+GGG + chr3_3:25225730-25225749 None:intergenic 25.0%
!! ATGTAATGGAAGCAATTAAA+TGG - chr3_3:25226169-25226188 Msa0447370:CDS 25.0%
!! TGTAATGGAAGCAATTAAAT+GGG - chr3_3:25226170-25226189 Msa0447370:CDS 25.0%
!!! ATTAAGGTTTTTTACTTAGG+TGG - chr3_3:25226556-25226575 Msa0447370:intron 25.0%
!!! TTAAGGTTTTTTACTTAGGT+GGG - chr3_3:25226557-25226576 Msa0447370:intron 25.0%
!!! ATTTGTTTTCCTAAACACAA+TGG + chr3_3:25226717-25226736 None:intergenic 25.0%
! TACTTGTCTCTTAAAGTTAA+AGG + chr3_3:25226910-25226929 None:intergenic 25.0%
! TGACTAACAAAACATATAAC+AGG + chr3_3:25227087-25227106 None:intergenic 25.0%
!!! TTGGAATTTTGACATATTCA+TGG - chr3_3:25227151-25227170 Msa0447370:intron 25.0%
!!! TCAATTTTAAAGGCAAATAG+TGG - chr3_3:25227292-25227311 Msa0447370:intron 25.0%
!!! CAATTTTAAAGGCAAATAGT+GGG - chr3_3:25227293-25227312 Msa0447370:intron 25.0%
!!! AATTTTAAAGGCAAATAGTG+GGG - chr3_3:25227294-25227313 Msa0447370:intron 25.0%
!! GTCAAAATATTCTTGTTTGT+CGG + chr3_3:25227595-25227614 None:intergenic 25.0%
! ATTTCTAATGCTCATACATT+TGG - chr3_3:25227621-25227640 Msa0447370:intron 25.0%
! AGACAAAAAAGAGTGATTAA+AGG + chr3_3:25227748-25227767 None:intergenic 25.0%
! ATCTAAGGGATATTGTTAAT+AGG - chr3_3:25228052-25228071 Msa0447370:intron 25.0%
!! TATATAGTCTATTCTTTTGG+AGG + chr3_3:25228208-25228227 None:intergenic 25.0%
!! AGCTATATAGTCTATTCTTT+TGG + chr3_3:25228211-25228230 None:intergenic 25.0%
! AGAATAGTCATTGGTAAATA+AGG + chr3_3:25228624-25228643 None:intergenic 25.0%
! TGCATATATAGAATAGTCAT+TGG + chr3_3:25228633-25228652 None:intergenic 25.0%
! GTTTAGAAGAAGAAAATTTC+AGG - chr3_3:25228654-25228673 Msa0447370:intron 25.0%
! TTTCTTAAAGCCCAAAATAA+AGG + chr3_3:25228797-25228816 None:intergenic 25.0%
!!! TGTTGTTCTTTTAGAAATGT+GGG + chr3_3:25228870-25228889 None:intergenic 25.0%
!!! TTGTTGTTCTTTTAGAAATG+TGG + chr3_3:25228871-25228890 None:intergenic 25.0%
!! ATGTACATTTGAAGTGATAT+TGG - chr3_3:25228935-25228954 Msa0447370:intron 25.0%
!! TGTACATTTGAAGTGATATT+GGG - chr3_3:25228936-25228955 Msa0447370:intron 25.0%
! CAAAATTGAGAATTTCATCA+TGG + chr3_3:25229309-25229328 None:intergenic 25.0%
!!! TCACAAGTTGATTACATTTT+GGG - chr3_3:25229334-25229353 Msa0447370:CDS 25.0%
! ATTCTCTCTATATGATACAA+TGG + chr3_3:25229437-25229456 None:intergenic 25.0%
! GTATCATATAGAGAGAATAA+AGG - chr3_3:25229439-25229458 Msa0447370:CDS 25.0%
!!! AAATATTAGGATTTGGTTCT+TGG + chr3_3:25229507-25229526 None:intergenic 25.0%
!! AGAACCAAATCCTAATATTT+TGG - chr3_3:25229507-25229526 Msa0447370:intron 25.0%
! TCAAAATTGTCTAGATTATC+AGG + chr3_3:25229553-25229572 None:intergenic 25.0%
!! TGATAATCTAGACAATTTTG+AGG - chr3_3:25229552-25229571 Msa0447370:intron 25.0%
!!! AGTACCAAGTTTTTTTTAGG+AGG - chr3_3:25225645-25225664 Msa0447370:three_prime_UTR 30.0%
!!! GTACCAAGTTTTTTTTAGGA+GGG - chr3_3:25225646-25225665 Msa0447370:three_prime_UTR 30.0%
GTGACAATGATGTTTAAATC+TGG + chr3_3:25225731-25225750 None:intergenic 30.0%
! TTACAGATGGTTTAGAACAA+GGG - chr3_3:25225902-25225921 Msa0447370:CDS 30.0%
!!! TTTTGGGTTTGTGTTTTTTC+AGG - chr3_3:25226011-25226030 Msa0447370:CDS 30.0%
! TGTGAAATTTGGTTTACCAA+TGG - chr3_3:25226071-25226090 Msa0447370:CDS 30.0%
! GTAATGGAAGCAATTAAATG+GGG - chr3_3:25226171-25226190 Msa0447370:CDS 30.0%
TCTCAAATTATTAGCAGTGT+GGG + chr3_3:25226314-25226333 None:intergenic 30.0%
TTCTCAAATTATTAGCAGTG+TGG + chr3_3:25226315-25226334 None:intergenic 30.0%
! TTTCCAATTTTTGAACTTCC+TGG - chr3_3:25226492-25226511 Msa0447370:intron 30.0%
TATCTTAAAAGCTTGTCTTG+AGG + chr3_3:25226633-25226652 None:intergenic 30.0%
AAAAGTAGCTGAGAATAATG+TGG + chr3_3:25226740-25226759 None:intergenic 30.0%
GTGAATATAGCACAATTTAG+AGG + chr3_3:25226789-25226808 None:intergenic 30.0%
TTGTGCTATATTCACTATAG+TGG - chr3_3:25226794-25226813 Msa0447370:intron 30.0%
! AAGGTGCTTAAAAATGAAGT+GGG + chr3_3:25226891-25226910 None:intergenic 30.0%
!! AAAGGTGCTTAAAAATGAAG+TGG + chr3_3:25226892-25226911 None:intergenic 30.0%
CTCTTTGATTAGTAATCTCA+TGG + chr3_3:25227117-25227136 None:intergenic 30.0%
ATTATGCATTCACACTTATC+AGG + chr3_3:25227246-25227265 None:intergenic 30.0%
! ATTGTGCAGTTATTTGAGTT+TGG - chr3_3:25227453-25227472 Msa0447370:intron 30.0%
! TTGTGCAGTTATTTGAGTTT+GGG - chr3_3:25227454-25227473 Msa0447370:intron 30.0%
AAATACAGAGGGAAATATGA+TGG - chr3_3:25227480-25227499 Msa0447370:intron 30.0%
ATACATGGATGAGTTATTGT+GGG - chr3_3:25227545-25227564 Msa0447370:intron 30.0%
! AAAATATTCTTGTTTGTCGG+TGG + chr3_3:25227592-25227611 None:intergenic 30.0%
TTACCTTTGATGCTAAAACT+TGG + chr3_3:25227701-25227720 None:intergenic 30.0%
!!! TGTTGGTTTTCCTTTTTCAA+TGG - chr3_3:25227884-25227903 Msa0447370:CDS 30.0%
GAGAAATAAGCCATTGAAAA+AGG + chr3_3:25227897-25227916 None:intergenic 30.0%
! ATGTTAGTAAAGCATTATGC+AGG + chr3_3:25227930-25227949 None:intergenic 30.0%
! GATGGGTTTAAGACTTAATT+TGG - chr3_3:25227967-25227986 Msa0447370:CDS 30.0%
ATTTGATGGAGCAATATCTA+AGG - chr3_3:25228037-25228056 Msa0447370:intron 30.0%
TTTGATGGAGCAATATCTAA+GGG - chr3_3:25228038-25228057 Msa0447370:intron 30.0%
CTATCACAGTTCAATTAAAG+TGG - chr3_3:25228131-25228150 Msa0447370:intron 30.0%
ACCATTGAAACTTCAACATT+TGG + chr3_3:25228175-25228194 None:intergenic 30.0%
! ACCCTTTTTATGTTTTCTTC+AGG - chr3_3:25228524-25228543 Msa0447370:intron 30.0%
CCCTGAAGAAAACATAAAAA+GGG + chr3_3:25228528-25228547 None:intergenic 30.0%
! CCCTTTTTATGTTTTCTTCA+GGG - chr3_3:25228525-25228544 Msa0447370:intron 30.0%
ACCCTGAAGAAAACATAAAA+AGG + chr3_3:25228529-25228548 None:intergenic 30.0%
TAATGCACAATGATTGATAG+TGG - chr3_3:25228698-25228717 Msa0447370:intron 30.0%
!! TATTTCTGGAAATGTACTTC+TGG - chr3_3:25228892-25228911 Msa0447370:CDS 30.0%
! GTAACTTTTGCAGTTTTTGA+TGG - chr3_3:25229036-25229055 Msa0447370:intron 30.0%
TCATGTCTCAACAAAAACAA+TGG - chr3_3:25229127-25229146 Msa0447370:intron 30.0%
!! TGATCTTTTGATTCTCACTT+TGG + chr3_3:25229264-25229283 None:intergenic 30.0%
AAAAGATCAATTGCCAAGAT+GGG - chr3_3:25229275-25229294 Msa0447370:CDS 30.0%
AATGTAATCAACTTGTGACT+TGG + chr3_3:25229332-25229351 None:intergenic 30.0%
!!! GTCACAAGTTGATTACATTT+TGG - chr3_3:25229333-25229352 Msa0447370:CDS 30.0%
!! AACTCATGTTAAGTGGATTT+TGG + chr3_3:25229360-25229379 None:intergenic 30.0%
ACTAAGTAACTCATGTTAAG+TGG + chr3_3:25229367-25229386 None:intergenic 30.0%
ACTTAACATGAGTTACTTAG+TGG - chr3_3:25229366-25229385 Msa0447370:CDS 30.0%
CTTAACATGAGTTACTTAGT+GGG - chr3_3:25229367-25229386 Msa0447370:CDS 30.0%
CCAACCAAAATATTAGGATT+TGG + chr3_3:25229514-25229533 None:intergenic 30.0%
!!! CCAAATCCTAATATTTTGGT+TGG - chr3_3:25229511-25229530 Msa0447370:intron 30.0%
AAAGCTCCAACCAAAATATT+AGG + chr3_3:25229520-25229539 None:intergenic 30.0%
!!! TAATATTTTGGTTGGAGCTT+TGG - chr3_3:25229519-25229538 Msa0447370:intron 30.0%
!! TAGACAATTTTGAGGATCAA+AGG - chr3_3:25229560-25229579 Msa0447370:intron 30.0%
ATATAATACTGCACCATTAG+TGG - chr3_3:25229612-25229631 Msa0447370:CDS 30.0%
TATAATACTGCACCATTAGT+GGG - chr3_3:25229613-25229632 Msa0447370:CDS 30.0%
TTTGCAAAATTCATGCAAAG+AGG - chr3_3:25229640-25229659 Msa0447370:CDS 30.0%
TTGCAAAATTCATGCAAAGA+GGG - chr3_3:25229641-25229660 Msa0447370:CDS 30.0%
CTTCCCTCCTAAAAAAAACT+TGG + chr3_3:25225652-25225671 None:intergenic 35.0%
! CAATTAACACGTTGGTTGTA+TGG + chr3_3:25225865-25225884 None:intergenic 35.0%
CATACAACCAACGTGTTAAT+TGG - chr3_3:25225863-25225882 Msa0447370:CDS 35.0%
! CTTACAGATGGTTTAGAACA+AGG - chr3_3:25225901-25225920 Msa0447370:CDS 35.0%
! TACAGATGGTTTAGAACAAG+GGG - chr3_3:25225903-25225922 Msa0447370:CDS 35.0%
!!! TGTGTTTTTTCAGGTGGATT+TGG - chr3_3:25226020-25226039 Msa0447370:CDS 35.0%
!!! TTTTTTCAGGTGGATTTGGT+TGG - chr3_3:25226024-25226043 Msa0447370:CDS 35.0%
TTACTGTCACAATGTTGTCA+TGG - chr3_3:25226097-25226116 Msa0447370:CDS 35.0%
!! ATAGCTTGTGAGACATTTTG+AGG - chr3_3:25226417-25226436 Msa0447370:CDS 35.0%
CAACCAGGAAGTTCAAAAAT+TGG + chr3_3:25226498-25226517 None:intergenic 35.0%
CATTAATCATCACATCAACC+AGG + chr3_3:25226513-25226532 None:intergenic 35.0%
! CTGGTTGATGTGATGATTAA+TGG - chr3_3:25226511-25226530 Msa0447370:intron 35.0%
!!! TTTTTTACTTAGGTGGGTGA+TGG - chr3_3:25226563-25226582 Msa0447370:intron 35.0%
AAGATAGATGAGAAGAATCC+AGG - chr3_3:25226647-25226666 Msa0447370:intron 35.0%
! AAGAGACTCGTGAATGTTTT+TGG - chr3_3:25227132-25227151 Msa0447370:intron 35.0%
! GACATATTCATGGACTATAG+TGG - chr3_3:25227161-25227180 Msa0447370:intron 35.0%
CACTTATCAGGAACATTACT+TGG + chr3_3:25227234-25227253 None:intergenic 35.0%
! TGTGCAGTTATTTGAGTTTG+GGG - chr3_3:25227455-25227474 Msa0447370:intron 35.0%
GATACATGGATGAGTTATTG+TGG - chr3_3:25227544-25227563 Msa0447370:intron 35.0%
TACATGGATGAGTTATTGTG+GGG - chr3_3:25227546-25227565 Msa0447370:intron 35.0%
TCTAATGCTCATACATTTGG+TGG - chr3_3:25227624-25227643 Msa0447370:intron 35.0%
!! ATACATTTGGTGGTATTGGT+TGG - chr3_3:25227634-25227653 Msa0447370:intron 35.0%
!! TCTCCAAGTTTTAGCATCAA+AGG - chr3_3:25227695-25227714 Msa0447370:intron 35.0%
TTTGAATTAAGCCAACCTAG+AGG + chr3_3:25227782-25227801 None:intergenic 35.0%
AGTAAAAGCAAAAAGCAGCA+TGG + chr3_3:25227823-25227842 None:intergenic 35.0%
!!! TGCTGCTTTTTGCTTTTACT+TGG - chr3_3:25227823-25227842 Msa0447370:CDS 35.0%
ACAGTTCAATTAAAGTGGTC+TGG - chr3_3:25228136-25228155 Msa0447370:intron 35.0%
ATTAAAGTGGTCTGGCTATA+TGG - chr3_3:25228144-25228163 Msa0447370:intron 35.0%
GCCAAATGTTGAAGTTTCAA+TGG - chr3_3:25228171-25228190 Msa0447370:intron 35.0%
!! ACATGCATTGACTGTCAAAA+TGG - chr3_3:25228385-25228404 Msa0447370:intron 35.0%
TCAATCAGATAAGCAATCAG+TGG + chr3_3:25228423-25228442 None:intergenic 35.0%
AGGGTTTGCAATAAATCAGT+TGG - chr3_3:25228544-25228563 Msa0447370:intron 35.0%
! AAAACTGCTAGAGCACATTT+TGG - chr3_3:25228576-25228595 Msa0447370:intron 35.0%
!!! TAGAGCACATTTTGGTTACT+TGG - chr3_3:25228584-25228603 Msa0447370:intron 35.0%
GATTACTCTATGTAAGACAG+TGG - chr3_3:25229179-25229198 Msa0447370:intron 35.0%
CAAAAGATCAATTGCCAAGA+TGG - chr3_3:25229274-25229293 Msa0447370:CDS 35.0%
ATGAGTTACTTAGTGGGATA+TGG - chr3_3:25229373-25229392 Msa0447370:CDS 35.0%
TGAGTTACTTAGTGGGATAT+GGG - chr3_3:25229374-25229393 Msa0447370:CDS 35.0%
AGAGAGAATAAAGGGTTCAT+AGG - chr3_3:25229448-25229467 Msa0447370:intron 35.0%
GAGAGAATAAAGGGTTCATA+GGG - chr3_3:25229449-25229468 Msa0447370:intron 35.0%
! CAAGGGTATGATAATTGGTA+TGG - chr3_3:25229478-25229497 Msa0447370:intron 35.0%
GAACAATTATGTGCAAACTG+AGG - chr3_3:25229582-25229601 Msa0447370:CDS 35.0%
TTTGCAAAAACTCCCACTAA+TGG + chr3_3:25229628-25229647 None:intergenic 35.0%
!! TACTTTGAAGCACAACGTTC+TGG - chr3_3:25225832-25225851 Msa0447370:CDS 40.0%
!! ACTTTGAAGCACAACGTTCT+GGG - chr3_3:25225833-25225852 Msa0447370:CDS 40.0%
GTTAATTGGCGTCATCATTC+TGG - chr3_3:25225877-25225896 Msa0447370:CDS 40.0%
!! CATCATTCTGGTCTTACAGA+TGG - chr3_3:25225889-25225908 Msa0447370:CDS 40.0%
!!! TGGGTTTGTGTTTTTTCAGG+TGG - chr3_3:25226014-25226033 Msa0447370:CDS 40.0%
GCAGGTGATCATGTGAAATT+TGG - chr3_3:25226060-25226079 Msa0447370:CDS 40.0%
ATTGTGACAGTAAACGCCAT+TGG + chr3_3:25226090-25226109 None:intergenic 40.0%
! CATGGAGTGCTATTGAGTTT+AGG - chr3_3:25226115-25226134 Msa0447370:CDS 40.0%
AGGCAAGAAATTGTTGAAGC+TGG - chr3_3:25226135-25226154 Msa0447370:CDS 40.0%
ATTGTTGAAGCTGGTGAACT+TGG - chr3_3:25226144-25226163 Msa0447370:CDS 40.0%
TGGTGAACTTGGTCATGTAA+TGG - chr3_3:25226155-25226174 Msa0447370:CDS 40.0%
ATACTAGCCCAAATGTGTTG+TGG - chr3_3:25226217-25226236 Msa0447370:CDS 40.0%
TACTAGCCCAAATGTGTTGT+GGG - chr3_3:25226218-25226237 Msa0447370:CDS 40.0%
GATTAGACATGTCACAGTGT+CGG + chr3_3:25226378-25226397 None:intergenic 40.0%
GAGACACAGACCATTATTGT+TGG - chr3_3:25226585-25226604 Msa0447370:intron 40.0%
ACTATAGTGGCACTAGTGTT+TGG - chr3_3:25226807-25226826 Msa0447370:intron 40.0%
GGCATTGTCTCGCATATTTA+AGG - chr3_3:25227182-25227201 Msa0447370:intron 40.0%
AGTTTGGGGACAAATACAGA+GGG - chr3_3:25227469-25227488 Msa0447370:intron 40.0%
! GGGAAATATGATGGAAGTGT+TGG - chr3_3:25227489-25227508 Msa0447370:intron 40.0%
! GCTCATACATTTGGTGGTAT+TGG - chr3_3:25227630-25227649 Msa0447370:intron 40.0%
GTCCATAACAGAATTCAGCT+GGG - chr3_3:25227656-25227675 Msa0447370:intron 40.0%
ATCCCAGCTGAATTCTGTTA+TGG + chr3_3:25227661-25227680 None:intergenic 40.0%
! TTCAATGGCTTATTTCTCGC+TGG - chr3_3:25227899-25227918 Msa0447370:CDS 40.0%
TAGACTGCATCAATTGCACA+TGG + chr3_3:25228114-25228133 None:intergenic 40.0%
CAACCTTTCAACTCATCATG+AGG - chr3_3:25228460-25228479 Msa0447370:intron 40.0%
! TTGCCTCATGATGAGTTGAA+AGG + chr3_3:25228466-25228485 None:intergenic 40.0%
CATGAGGCAAGCTATTACTA+TGG - chr3_3:25228476-25228495 Msa0447370:intron 40.0%
! AAGGGTGTATTCCATGAATG+TGG + chr3_3:25228510-25228529 None:intergenic 40.0%
! GTGCTCTAGCAGTTTTACAA+TGG + chr3_3:25228572-25228591 None:intergenic 40.0%
!! GCACAATGATTGATAGTGGA+TGG - chr3_3:25228702-25228721 Msa0447370:intron 40.0%
TAACAAATGGATCAAGGGCA+AGG + chr3_3:25228758-25228777 None:intergenic 40.0%
!!! TGGATAGTGGGCCTTTATTT+TGG - chr3_3:25228783-25228802 Msa0447370:CDS 40.0%
!!! GGATAGTGGGCCTTTATTTT+GGG - chr3_3:25228784-25228803 Msa0447370:CDS 40.0%
! GAAAGTTGATCCCTTTGCAT+AGG + chr3_3:25228841-25228860 None:intergenic 40.0%
!! CTTTTAGAAATGTGGGAGTG+TGG + chr3_3:25228863-25228882 None:intergenic 40.0%
CTTACATAGAGTAATCCAGC+TGG + chr3_3:25229175-25229194 None:intergenic 40.0%
! GCACACAAGGGTATGATAAT+TGG - chr3_3:25229473-25229492 Msa0447370:intron 40.0%
!!! ATTTTGGTTGGAGCTTTGGT+AGG - chr3_3:25229523-25229542 Msa0447370:intron 40.0%
TCATGCAAAGAGGGAATAGA+AGG - chr3_3:25229650-25229669 Msa0447370:CDS 40.0%
GATGACGCCAATTAACACGT+TGG + chr3_3:25225873-25225892 None:intergenic 45.0%
! TTTCAGGTGGATTTGGTTGG+AGG - chr3_3:25226027-25226046 Msa0447370:CDS 45.0%
! TTCAGGTGGATTTGGTTGGA+GGG - chr3_3:25226028-25226047 Msa0447370:CDS 45.0%
ACTGTGACATGTCTAATCCG+AGG - chr3_3:25226380-25226399 Msa0447370:CDS 45.0%
GTCTCACAAGCTATGAAGCA+CGG + chr3_3:25226411-25226430 None:intergenic 45.0%
CTGGACGTTGCCAACAATAA+TGG + chr3_3:25226598-25226617 None:intergenic 45.0%
TTATTGTTGGCAACGTCCAG+AGG - chr3_3:25226598-25226617 Msa0447370:intron 45.0%
GAAGAATCCAGGTTCAGATC+TGG - chr3_3:25226658-25226677 Msa0447370:intron 45.0%
CAGCTGCTTCCATTGTGTTT+AGG - chr3_3:25226705-25226724 Msa0447370:intron 45.0%
TTACTACTACCTGCTGAGCA+TGG + chr3_3:25226766-25226785 None:intergenic 45.0%
AGTGGCACTAGTGTTTGGTT+TGG - chr3_3:25226812-25226831 Msa0447370:intron 45.0%
GTGGGGTATGAAGTATGAAC+TGG - chr3_3:25227311-25227330 Msa0447370:CDS 45.0%
GAGTTTGGGGACAAATACAG+AGG - chr3_3:25227468-25227487 Msa0447370:intron 45.0%
AGTGAAGAGCTACTATGCGT+CGG - chr3_3:25227515-25227534 Msa0447370:intron 45.0%
AGTTATTGTGGGGAGCTATG+TGG - chr3_3:25227556-25227575 Msa0447370:intron 45.0%
GGTCCATAACAGAATTCAGC+TGG - chr3_3:25227655-25227674 Msa0447370:intron 45.0%
AGCTGGGATGTTAAGTATGC+TGG - chr3_3:25227672-25227691 Msa0447370:intron 45.0%
GTCTCATTTCACGTTCCTCT+AGG - chr3_3:25227764-25227783 Msa0447370:intron 45.0%
CATTTCACGTTCCTCTAGGT+TGG - chr3_3:25227768-25227787 Msa0447370:intron 45.0%
TGTGCCTTCTACCTATGCAA+AGG - chr3_3:25228827-25228846 Msa0447370:CDS 45.0%
GTGCCTTCTACCTATGCAAA+GGG - chr3_3:25228828-25228847 Msa0447370:CDS 45.0%
GATCCCTTTGCATAGGTAGA+AGG + chr3_3:25228834-25228853 None:intergenic 45.0%
AAACAATGGCAGCAGCAATG+TGG - chr3_3:25229141-25229160 Msa0447370:intron 45.0%
AATGTGGAAAGAACACCAGC+TGG - chr3_3:25229157-25229176 Msa0447370:intron 45.0%
! CTCTATGATGCACCCTTTTG+GGG + chr3_3:25229408-25229427 None:intergenic 45.0%
! CCTCTATGATGCACCCTTTT+GGG + chr3_3:25229409-25229428 None:intergenic 45.0%
! ACCTCTATGATGCACCCTTT+TGG + chr3_3:25229410-25229429 None:intergenic 45.0%
GCAAAGAGGGAATAGAAGGT+TGG - chr3_3:25229654-25229673 Msa0447370:CDS 45.0%
! TTGAAGCACAACGTTCTGGG+AGG - chr3_3:25225836-25225855 Msa0447370:CDS 50.0%
!! GTTGGAGGGTACTATGATGC+AGG - chr3_3:25226042-25226061 Msa0447370:CDS 50.0%
CCTCTGCCCACAACACATTT+GGG + chr3_3:25226227-25226246 None:intergenic 50.0%
ACCTCTGCCCACAACACATT+TGG + chr3_3:25226228-25226247 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+CGG + chr3_3:25226400-25226419 None:intergenic 50.0%
CTTGAGGTTGTCATGTCCTC+TGG + chr3_3:25226617-25226636 None:intergenic 50.0%
AATCCAGGTTCAGATCTGGC+TGG - chr3_3:25226662-25226681 Msa0447370:intron 50.0%
TGGAGAAACTGCTGCAGCTA+TGG - chr3_3:25226682-25226701 Msa0447370:intron 50.0%
! ACTTTTGCACCATGCTCAGC+AGG - chr3_3:25226754-25226773 Msa0447370:intron 50.0%
!! GGCACTAGTGTTTGGTTTGG+TGG - chr3_3:25226815-25226834 Msa0447370:intron 50.0%
TGGTGTGTGCTCCACATTCA+TGG - chr3_3:25228496-25228515 Msa0447370:intron 50.0%
CATGGCTCACAATCCCATCT+TGG + chr3_3:25229291-25229310 None:intergenic 50.0%
ATGGGCCTAAGTACCCCAAA+AGG - chr3_3:25229392-25229411 Msa0447370:CDS 50.0%
TGGGCCTAAGTACCCCAAAA+GGG - chr3_3:25229393-25229412 Msa0447370:CDS 50.0%
!!! TGCACCCTTTTGGGGTACTT+AGG + chr3_3:25229400-25229419 None:intergenic 50.0%
! CCCAAAAGGGTGCATCATAG+AGG - chr3_3:25229406-25229425 Msa0447370:CDS 50.0%
GGTTCATAGGGTGCACACAA+GGG - chr3_3:25229461-25229480 Msa0447370:intron 50.0%
! TTGGTTGGAGCTTTGGTAGG+AGG - chr3_3:25229526-25229545 Msa0447370:intron 50.0%
CCCAAATGTGTTGTGGGCAG+AGG - chr3_3:25226224-25226243 Msa0447370:CDS 55.0%
TCTCCAGCCAGATCTGAACC+TGG + chr3_3:25226668-25226687 None:intergenic 55.0%
! AGCTACTATGCGTCGGTGAG+TGG - chr3_3:25227522-25227541 Msa0447370:intron 55.0%
! TGCGTCGGTGAGTGGATACA+TGG - chr3_3:25227530-25227549 Msa0447370:intron 55.0%
GGGTTCATAGGGTGCACACA+AGG - chr3_3:25229460-25229479 Msa0447370:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 25225562 25229933 25225562 ID=Msa0447370;Name=Msa0447370
chr3_3 mRNA 25225562 25229933 25225562 ID=Msa0447370-mRNA-1;Parent=Msa0447370;Name=Msa0447370-mRNA-1;_AED=0.22;_eAED=0.22;_QI=120|0.6|0.83|1|1|1|6|219|546
chr3_3 exon 25225562 25226446 25225562 ID=Msa0447370-mRNA-1:exon:4980;Parent=Msa0447370-mRNA-1
chr3_3 exon 25227303 25227365 25227303 ID=Msa0447370-mRNA-1:exon:4979;Parent=Msa0447370-mRNA-1
chr3_3 exon 25227779 25228033 25227779 ID=Msa0447370-mRNA-1:exon:4978;Parent=Msa0447370-mRNA-1
chr3_3 exon 25228720 25228920 25228720 ID=Msa0447370-mRNA-1:exon:4977;Parent=Msa0447370-mRNA-1
chr3_3 exon 25229250 25229462 25229250 ID=Msa0447370-mRNA-1:exon:4976;Parent=Msa0447370-mRNA-1
chr3_3 exon 25229571 25229933 25229571 ID=Msa0447370-mRNA-1:exon:4975;Parent=Msa0447370-mRNA-1
chr3_3 five_prime_UTR 25229814 25229933 25229814 ID=Msa0447370-mRNA-1:five_prime_utr;Parent=Msa0447370-mRNA-1
chr3_3 CDS 25229571 25229813 25229571 ID=Msa0447370-mRNA-1:cds;Parent=Msa0447370-mRNA-1
chr3_3 CDS 25229250 25229462 25229250 ID=Msa0447370-mRNA-1:cds;Parent=Msa0447370-mRNA-1
chr3_3 CDS 25228720 25228920 25228720 ID=Msa0447370-mRNA-1:cds;Parent=Msa0447370-mRNA-1
chr3_3 CDS 25227779 25228033 25227779 ID=Msa0447370-mRNA-1:cds;Parent=Msa0447370-mRNA-1
chr3_3 CDS 25227303 25227365 25227303 ID=Msa0447370-mRNA-1:cds;Parent=Msa0447370-mRNA-1
chr3_3 CDS 25225781 25226446 25225781 ID=Msa0447370-mRNA-1:cds;Parent=Msa0447370-mRNA-1
chr3_3 three_prime_UTR 25225562 25225780 25225562 ID=Msa0447370-mRNA-1:three_prime_utr;Parent=Msa0447370-mRNA-1
Gene Sequence

>Msa0447370

ATGAAGAATGAGAGACAACAACAACATCATAGAGCTTCTAAAATTCCCAGATTTAAACATCATTGTCACATTTTTCTCTTCATTTTGTTCACTCTTTTTTCCATAACACAATCTTTTGATTATGCTGATGCACTTTCAAAAAGTCTTCTTTACTTTGAAGCACAACGTTCTGGGAGGTTACCATACAACCAACGTGTTAATTGGCGTCATCATTCTGGTCTTACAGATGGTTTAGAACAAGGGGTGGATTTGGTTGGAGGGTACTATGATGCAGGTGATCATGTGAAATTTGGTTTACCAATGGCGTTTACTGTCACAATGTTGTCATGGAGTGCTATTGAGTTTAGGCAAGAAATTGTTGAAGCTGGTGAACTTGGTCATGTAATGGAAGCAATTAAATGGGGAACTGATTATTTCATCAAAGCTCATACTAGCCCAAATGTGTTGTGGGCAGAGGTGGGTGATGGAGACACAGACCATTATTGTTGGCAACGTCCAGAGGACATGACAACCTCAAGACAAGCTTTTAAGATAGATGAGAAGAATCCAGGTTCAGATCTGGCTGGAGAAACTGCTGCAGCTATGGCAGCTGCTTCCATTGTGTTTAGGAAAACAAATCCACATTATTCTCAGCTACTTTTGCACCATGCTCAGCAGTTATTTGAGTTTGGGGACAAATACAGAGGGAAATATGATGGAAGTGTTGGAGTAGTGAAGAGCTACTATGCGTCGGTGAGTGGATACATGGATGAGTTATTGTGGGGAGCTATGTGGTTGTACAAAGCCACCGACAAACAAGAATATTTTGACTACATTATTTCTAATGCTCATACATTTGGTGGTATTGGTTGGTCCATAACAGAATTCAGCTGGGATGTTAAGTATGCTGGTCTCCAAGTTTTAGCATCAAAGTCTATCACAGTTCAATTAAAGTGGTCTGGCTATATGGTTGTGCCAAATGTTGAAGTTTCAATGTTTTTGATGGATGCAAAACACAACAAGCATGCTGATTTACTAGAACAGTACAAATCAAAAGCAGAGTACTATATATGTTCATGTCTCAACAAAAACAATGGCAGCAGCAATGTGGAAAGAACACCAGCTGGATTACTCTATGTAAGACAGTGGAACAACATGCAATATGTTTCTACAGCAGCATTTCTACTCACAGTTTACTCTGATTTTCTCCAAAGTGAGAATCAAAAGATCAATTGCCAAGATGGGATTGTGAGCCATGATGAAATTCTCAATTTTGCCAAGTCACAAGTTGATTACATTTTGGGCCAAAATCCACTTAACATGAGTTACTTAGTGGGATATGGGCCTAAGTACCCCAAAAGGGTGCATCATAGAGGTGCATCCATTGTATCATATAGAGAGAATAAAGGGTTCATAGGGTGCACACAAGGGTATGATAATTGGTATGGTGTCCAAGAACCAAATCCTAATATTTTGGTTGGAGCTTTGGTAGGAGGACCTGATAATCTAGACAATTTTGAGGATCAAAGGAACAATTATGTGCAAACTGAGGCTTGCACATATAATACTGCACCATTAGTGGGAGTTTTTGCAAAATTCATGCAAAGAGGGAATAGAAGGTTGGTTCATGATTCTGATTCACTTTTAGTTGCTTCCTTTTAA

Protein sequence

>Msa0447370

MKNERQQQHHRASKIPRFKHHCHIFLFILFTLFSITQSFDYADALSKSLLYFEAQRSGRLPYNQRVNWRHHSGLTDGLEQGVDLVGGYYDAGDHVKFGLPMAFTVTMLSWSAIEFRQEIVEAGELGHVMEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCWQRPEDMTTSRQAFKIDEKNPGSDLAGETAAAMAAASIVFRKTNPHYSQLLLHHAQQLFEFGDKYRGKYDGSVGVVKSYYASVSGYMDELLWGAMWLYKATDKQEYFDYIISNAHTFGGIGWSITEFSWDVKYAGLQVLASKSITVQLKWSGYMVVPNVEVSMFLMDAKHNKHADLLEQYKSKAEYYICSCLNKNNGSSNVERTPAGLLYVRQWNNMQYVSTAAFLLTVYSDFLQSENQKINCQDGIVSHDEILNFAKSQVDYILGQNPLNMSYLVGYGPKYPKRVHHRGASIVSYRENKGFIGCTQGYDNWYGVQEPNPNILVGALVGGPDNLDNFEDQRNNYVQTEACTYNTAPLVGVFAKFMQRGNRRLVHDSDSLLVASF*