Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066810 | XP_003623977.1 | 87.870 | 338 | 20 | 1 | 1 | 338 | 1 | 317 | 0.0 | 595 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066810 | sp|O82775|ATI1_ARATH | 39.412 | 340 | 120 | 11 | 1 | 338 | 1 | 256 | 3.87e-57 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066810 | G7L4P7 | 87.870 | 338 | 20 | 1 | 1 | 338 | 1 | 317 | 0.0 | 595 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa1066810 | 0.835422 | 1.693968e-56 | -8.615850e-47 |
| Msa0020390 | Msa1066810 | 0.810609 | 1.058782e-50 | -8.615850e-47 |
| Msa0049750 | Msa1066810 | 0.834609 | 2.714344e-56 | -8.615850e-47 |
| Msa0096980 | Msa1066810 | 0.800941 | 1.138184e-48 | -8.615850e-47 |
| Msa0604290 | Msa1066810 | 0.804309 | 2.297685e-49 | -8.615850e-47 |
| Msa0657120 | Msa1066810 | 0.804232 | 2.384476e-49 | -8.615850e-47 |
| Msa0701100 | Msa1066810 | 0.820082 | 8.275919e-53 | -8.615850e-47 |
| Msa0183870 | Msa1066810 | 0.801416 | 9.096224e-49 | -8.615850e-47 |
| Msa0233370 | Msa1066810 | 0.826398 | 2.773395e-54 | -8.615850e-47 |
| Msa0376600 | Msa1066810 | 0.830621 | 2.649507e-55 | -8.615850e-47 |
| Msa0388730 | Msa1066810 | 0.825320 | 4.999862e-54 | -8.615850e-47 |
| Msa1013070 | Msa1066810 | 0.845419 | 4.109238e-59 | -8.615850e-47 |
| Msa1066810 | Msa1066960 | 0.917630 | 4.199369e-86 | -8.615850e-47 |
| Msa1066810 | Msa1070520 | 0.814083 | 1.845644e-51 | -8.615850e-47 |
| Msa1066810 | Msa1101220 | 0.808621 | 2.830912e-50 | -8.615850e-47 |
| Msa1066810 | Msa1109810 | 0.802677 | 5.008149e-49 | -8.615850e-47 |
| Msa1066810 | Msa1112250 | 0.862724 | 4.137116e-64 | -8.615850e-47 |
| Msa1066810 | Msa1208370 | 0.811479 | 6.857284e-51 | -8.615850e-47 |
| Msa1066810 | Msa1208380 | 0.831007 | 2.130007e-55 | -8.615850e-47 |
| Msa1066810 | Msa1229480 | 0.813626 | 2.326641e-51 | -8.615850e-47 |
| Msa1066810 | Msa1304810 | 0.802652 | 5.068339e-49 | -8.615850e-47 |
| Msa1066810 | Msa1382020 | 0.827267 | 1.719747e-54 | -8.615850e-47 |
| Msa1066810 | Msa1438840 | 0.863042 | 3.301849e-64 | -8.615850e-47 |
| Msa1066810 | Msa1440190 | 0.804382 | 2.218566e-49 | -8.615850e-47 |
| Msa1066810 | Msa1449750 | 0.808272 | 3.360741e-50 | -8.615850e-47 |
| Msa0518170 | Msa1066810 | 0.808050 | 3.746733e-50 | -8.615850e-47 |
| Msa0542560 | Msa1066810 | 0.818483 | 1.914357e-52 | -8.615850e-47 |
| Msa0934840 | Msa1066810 | 0.803744 | 3.012190e-49 | -8.615850e-47 |
| Msa0971850 | Msa1066810 | 0.814085 | 1.843384e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066810 | MtrunA17_Chr7g0247891 | 87.870 | 338 | 20 | 1 | 1 | 338 | 1 | 317 | 0.0 | 595 |
| Msa1066810 | MtrunA17_Chr2g0290951 | 83.333 | 252 | 22 | 1 | 1 | 252 | 1 | 232 | 4.40e-147 | 414 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066810 | AT2G45980.1 | 39.412 | 340 | 120 | 11 | 1 | 338 | 1 | 256 | 3.93e-58 | 189 |
| Msa1066810 | AT4G00355.3 | 39.339 | 333 | 125 | 11 | 6 | 334 | 3 | 262 | 8.09e-56 | 183 |
| Msa1066810 | AT4G00355.2 | 39.339 | 333 | 125 | 11 | 6 | 334 | 3 | 262 | 8.09e-56 | 183 |
| Msa1066810 | AT4G00355.1 | 39.339 | 333 | 125 | 11 | 6 | 334 | 3 | 262 | 8.09e-56 | 183 |
| Msa1066810 | AT4G00355.4 | 41.489 | 282 | 109 | 10 | 6 | 283 | 3 | 232 | 4.11e-48 | 163 |
Find 95 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTTACATATGATATT+TGG | 0.188969 | 7_2:+60934911 | None:intergenic |
| AGTGAGATTCAGAATGAATT+TGG | 0.214211 | 7_2:-60936429 | Msa1066810:CDS |
| GGCACAACTCTACCAGATTT+TGG | 0.228578 | 7_2:-60936234 | Msa1066810:CDS |
| ATCTCTCAACAAATCATATA+AGG | 0.316050 | 7_2:-60935391 | Msa1066810:intron |
| GAAGAAAACTTGACATTAGA+AGG | 0.322875 | 7_2:-60936345 | Msa1066810:CDS |
| GGCTACTACCATATGGTAAA+AGG | 0.325013 | 7_2:-60935175 | Msa1066810:three_prime_UTR |
| CTCCTTTGCATGAGCATAGA+TGG | 0.333088 | 7_2:+60935963 | None:intergenic |
| GGACCTACAGCTAGAGTAAA+AGG | 0.349922 | 7_2:+60934849 | None:intergenic |
| GAATAACGGAATTCATAGTT+TGG | 0.354381 | 7_2:+60935047 | None:intergenic |
| CAGATCTTCCTTGCGGAGCT+TGG | 0.354733 | 7_2:-60936005 | Msa1066810:CDS |
| ATCAACAGATTATCTATTCA+TGG | 0.363088 | 7_2:-60936273 | Msa1066810:CDS |
| AACTGCCAATTCCACATAAC+AGG | 0.379067 | 7_2:+60934940 | None:intergenic |
| CATCGTGTCGCGTTCATCTC+TGG | 0.381704 | 7_2:-60937641 | Msa1066810:intron |
| TGTCTCCTGCTCTGCTGATT+CGG | 0.382713 | 7_2:+60936092 | None:intergenic |
| AGCAGCAATGTCTGTTTCAC+TGG | 0.393072 | 7_2:+60936155 | None:intergenic |
| CAAAGGAGGCAAATACATTA+TGG | 0.393151 | 7_2:-60935948 | Msa1066810:CDS |
| AGAAGTGCAGGTTTGATACT+AGG | 0.393998 | 7_2:-60935085 | Msa1066810:three_prime_UTR |
| ATTATTCATTCATATGTTAC+CGG | 0.396888 | 7_2:+60937766 | None:intergenic |
| TTCATCCTTTCCACTAGGCT+TGG | 0.405829 | 7_2:+60936365 | None:intergenic |
| AAACTTGACATTAGAAGGAT+TGG | 0.407672 | 7_2:-60936340 | Msa1066810:CDS |
| ATCTTCCTTGCGGAGCTTGG+TGG | 0.419362 | 7_2:-60936002 | Msa1066810:CDS |
| TTTGACAGTGATAAATCATC+AGG | 0.420814 | 7_2:+60936060 | None:intergenic |
| CACATCTTTGAGTCGAATCA+TGG | 0.436493 | 7_2:+60935270 | None:intergenic |
| GTGTTCCTGTTATGTGGAAT+TGG | 0.445145 | 7_2:-60934945 | Msa1066810:three_prime_UTR |
| TATGTCAGAGAGGTTGAGAA+TGG | 0.449253 | 7_2:-60935123 | Msa1066810:three_prime_UTR |
| TATTGTGTGTTCCTGTTATG+TGG | 0.450636 | 7_2:-60934951 | Msa1066810:three_prime_UTR |
| AAAGAGCTTTACAACTTAAG+TGG | 0.462236 | 7_2:-60935864 | Msa1066810:CDS |
| CGGAATTCATAGTTTGGTAA+AGG | 0.463600 | 7_2:+60935053 | None:intergenic |
| TCAACTTATGCAGCTGCTCC+TGG | 0.470344 | 7_2:-60936597 | Msa1066810:CDS |
| GGATGTGTCAAAGGAGTTTG+AGG | 0.473894 | 7_2:-60936319 | Msa1066810:CDS |
| ATGTAACGTTTAAGAAGTGC+AGG | 0.475847 | 7_2:-60935097 | Msa1066810:three_prime_UTR |
| GCTTGGTCAACGCTGGCGAC+AGG | 0.477014 | 7_2:-60935887 | Msa1066810:CDS |
| AGAGATTTATGTGTCTGTAT+AGG | 0.478008 | 7_2:+60935408 | None:intergenic |
| GAAGTGACCAGACATGAATA+AGG | 0.494471 | 7_2:+60936500 | None:intergenic |
| AATATATAATGTTTGAATAA+CGG | 0.500958 | 7_2:+60935033 | None:intergenic |
| GTCTTCTCGCGGTAATGACT+GGG | 0.502839 | 7_2:-60936640 | Msa1066810:CDS |
| TTCATTGCAGCAACAGTGAT+GGG | 0.502883 | 7_2:-60935919 | Msa1066810:CDS |
| AACTCAACTTCACGTGGACC+AGG | 0.507089 | 7_2:+60936579 | None:intergenic |
| TGTTTCCACAGGCAAGGAGC+AGG | 0.508812 | 7_2:-60935303 | Msa1066810:intron |
| CTCAAAGATGTGATCGTTGG+TGG | 0.510999 | 7_2:-60935259 | Msa1066810:CDS |
| TTATGAAGACAAAAGATGGC+AGG | 0.513000 | 7_2:-60936684 | Msa1066810:intron |
| TATTCATGGAAAACAGTTTG+AGG | 0.519571 | 7_2:-60936259 | Msa1066810:CDS |
| GGAAGAGCTTTCTCTGATCA+AGG | 0.520300 | 7_2:+60935222 | None:intergenic |
| TGATCAAGGAGCCACGGCGG+TGG | 0.522980 | 7_2:+60935236 | None:intergenic |
| TTCATGCTTACTTGGTGGAA+AGG | 0.529697 | 7_2:+60936476 | None:intergenic |
| TCAAACGCCTTATTCATGTC+TGG | 0.529833 | 7_2:-60936507 | Msa1066810:CDS |
| ATGGCAGGAACTGAAGATGA+AGG | 0.531057 | 7_2:-60936669 | Msa1066810:CDS |
| TGCAGCAACAGTGATGGGTT+TGG | 0.532584 | 7_2:-60935914 | Msa1066810:CDS |
| TTTCATTGCAGCAACAGTGA+TGG | 0.533829 | 7_2:-60935920 | Msa1066810:CDS |
| AACAACCGAATCAGCAGAGC+AGG | 0.534322 | 7_2:-60936097 | Msa1066810:CDS |
| TAAGCATGAAAACTTGCCAT+TGG | 0.534678 | 7_2:-60936463 | Msa1066810:CDS |
| AGAAGGATTGGATGTGTCAA+AGG | 0.536048 | 7_2:-60936328 | Msa1066810:CDS |
| ATCAGCAGAGCAGGAGACAA+AGG | 0.541008 | 7_2:-60936088 | Msa1066810:CDS |
| CAAAGATATCGCCTCTGTAG+AGG | 0.545508 | 7_2:-60936403 | Msa1066810:CDS |
| TGAAGGTGGCTACTACCATA+TGG | 0.546356 | 7_2:-60935182 | Msa1066810:three_prime_UTR |
| CGCTTCCACCAAGCTCCGCA+AGG | 0.554434 | 7_2:+60935997 | None:intergenic |
| ATGTCAGAGAGGTTGAGAAT+GGG | 0.554482 | 7_2:-60935122 | Msa1066810:three_prime_UTR |
| CATGGAAAACAGTTTGAGGA+AGG | 0.557886 | 7_2:-60936255 | Msa1066810:CDS |
| GCTCCGCAAGGAAGATCTGA+AGG | 0.560737 | 7_2:+60936009 | None:intergenic |
| GTGATGGGTTTGGTGATGCT+TGG | 0.561745 | 7_2:-60935904 | Msa1066810:CDS |
| TCCACGTGAAGTTGAGTTGA+AGG | 0.562439 | 7_2:-60936574 | Msa1066810:CDS |
| TGGTGATGCTTGGTCAACGC+TGG | 0.565434 | 7_2:-60935894 | Msa1066810:CDS |
| TTATGTGTCTGTATAGGATG+AGG | 0.566846 | 7_2:+60935414 | None:intergenic |
| TGCGGAGCTTGGTGGAAGCG+AGG | 0.567411 | 7_2:-60935994 | Msa1066810:CDS |
| ACATCTTTGAGTCGAATCAT+GGG | 0.569536 | 7_2:+60935271 | None:intergenic |
| CGACTCAAAGATGTGATCGT+TGG | 0.574960 | 7_2:-60935262 | Msa1066810:CDS |
| CATCTATGCTCATGCAAAGG+AGG | 0.578296 | 7_2:-60935962 | Msa1066810:CDS |
| TGGCAGGAACTGAAGATGAA+GGG | 0.579156 | 7_2:-60936668 | Msa1066810:CDS |
| GAAATTTAACTCGGTGAAGG+TGG | 0.579228 | 7_2:-60935196 | Msa1066810:exon |
| GCAGCAATGTCTGTTTCACT+GGG | 0.581872 | 7_2:+60936156 | None:intergenic |
| TGAGTTGAAGGATGATGACA+AGG | 0.594626 | 7_2:-60936562 | Msa1066810:CDS |
| AGCGACCAAGCCTAGTGGAA+AGG | 0.597200 | 7_2:-60936370 | Msa1066810:CDS |
| GGCAGGAACTGAAGATGAAG+GGG | 0.599526 | 7_2:-60936667 | Msa1066810:CDS |
| GCTGAAATTTAACTCGGTGA+AGG | 0.601929 | 7_2:-60935199 | Msa1066810:exon |
| TCCTTCAACTCAACTTCACG+TGG | 0.602249 | 7_2:+60936573 | None:intergenic |
| CTCCATCTATGCTCATGCAA+AGG | 0.603944 | 7_2:-60935965 | Msa1066810:CDS |
| GCAAGTCAGTATTTCTGATG+AGG | 0.612309 | 7_2:-60935842 | Msa1066810:intron |
| TCACTATAGTCAGTTTCCAA+TGG | 0.627762 | 7_2:+60936447 | None:intergenic |
| TCTTCCGCTGAAATTTAACT+CGG | 0.629458 | 7_2:-60935205 | Msa1066810:exon |
| AACCCTTCAGATCTTCCTTG+CGG | 0.630132 | 7_2:-60936012 | Msa1066810:CDS |
| CGAAAAGTTGTATGTCAGAG+AGG | 0.635492 | 7_2:-60935133 | Msa1066810:three_prime_UTR |
| GAAGAAGCGACCAAGCCTAG+TGG | 0.639637 | 7_2:-60936375 | Msa1066810:CDS |
| ATCGTTGGTGGCCACCGCCG+TGG | 0.649963 | 7_2:-60935247 | Msa1066810:CDS |
| ACGCGACACGATGTTCGTAG+TGG | 0.655563 | 7_2:+60937651 | None:intergenic |
| CTCTGATCAAGGAGCCACGG+CGG | 0.656435 | 7_2:+60935233 | None:intergenic |
| TTCTCGCGGTAATGACTGGG+AGG | 0.656632 | 7_2:-60936637 | Msa1066810:CDS |
| TTTCTCTGATCAAGGAGCCA+CGG | 0.661567 | 7_2:+60935230 | None:intergenic |
| TTCACCGAGTTAAATTTCAG+CGG | 0.667738 | 7_2:+60935201 | None:intergenic |
| ATGTATTATGTATATCGATG+AGG | 0.677515 | 7_2:+60937690 | None:intergenic |
| CTCCGCAAGGAAGATCTGAA+GGG | 0.679694 | 7_2:+60936010 | None:intergenic |
| GAAGGGGAAAAGTCTTCTCG+CGG | 0.683817 | 7_2:-60936651 | Msa1066810:CDS |
| CTTTGCATGAGCATAGATGG+AGG | 0.694461 | 7_2:+60935966 | None:intergenic |
| TTGAAGGATGATGACAAGGA+AGG | 0.695939 | 7_2:-60936558 | Msa1066810:CDS |
| TTCTTCACGAGCCTCTACAG+AGG | 0.708502 | 7_2:+60936392 | None:intergenic |
| CAGCAATGTCTGTTTCACTG+GGG | 0.782536 | 7_2:+60936157 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGTTATTTTAATTTAATATT+AGG | - | chr7_2:60935327-60935346 | Msa1066810:intron | 10.0% |
| !! | AATATATAATGTTTGAATAA+CGG | + | chr7_2:60937581-60937600 | None:intergenic | 10.0% |
| !! | TATTTATATTCATTCTTCTA+AGG | - | chr7_2:60936794-60936813 | Msa1066810:intron | 15.0% |
| !! | CTTAATTTACATATGATATT+TGG | + | chr7_2:60937703-60937722 | None:intergenic | 15.0% |
| !!! | TAACTATTTGCATGAAATTT+TGG | - | chr7_2:60935388-60935407 | Msa1066810:intron | 20.0% |
| !! | AAACAAATACAATTATGCAA+GGG | + | chr7_2:60935833-60935852 | None:intergenic | 20.0% |
| !! | AAAACAAATACAATTATGCA+AGG | + | chr7_2:60935834-60935853 | None:intergenic | 20.0% |
| !!! | TTTTTTATGAAGACAAAAGA+TGG | - | chr7_2:60935923-60935942 | Msa1066810:CDS | 20.0% |
| !! | TTTGTTAAAAATGAAGCATA+AGG | - | chr7_2:60936832-60936851 | Msa1066810:intron | 20.0% |
| !! | TATAATGTTATGCATAAAGA+TGG | - | chr7_2:60936926-60936945 | Msa1066810:intron | 20.0% |
| !!! | TACTTTAAAAATGAAGGTTA+TGG | - | chr7_2:60937106-60937125 | Msa1066810:intron | 20.0% |
| !!! | ACTTTAAAAATGAAGGTTAT+GGG | - | chr7_2:60937107-60937126 | Msa1066810:intron | 20.0% |
| !!! | GCAATGTAATATTTATTTTG+TGG | - | chr7_2:60937140-60937159 | Msa1066810:intron | 20.0% |
| ! | ATGTATTATGTATATCGATG+AGG | + | chr7_2:60934924-60934943 | None:intergenic | 25.0% |
| !! | TTCTTTATTTGTGCTGTTAT+TGG | - | chr7_2:60935126-60935145 | Msa1066810:three_prime_UTR | 25.0% |
| !!! | TGTTGTTATTTGAATTCAGT+GGG | - | chr7_2:60935207-60935226 | Msa1066810:exon | 25.0% |
| ! | AAATAGTTAGATCAATCTCT+GGG | + | chr7_2:60935377-60935396 | None:intergenic | 25.0% |
| !!! | GGTTATTTTAGTTTTTTCAG+TGG | - | chr7_2:60935409-60935428 | Msa1066810:CDS | 25.0% |
| ! | TACAAGAAAACTACTACTTT+AGG | + | chr7_2:60935755-60935774 | None:intergenic | 25.0% |
| ! | ATCAACAGATTATCTATTCA+TGG | - | chr7_2:60936338-60936357 | Msa1066810:CDS | 25.0% |
| ! | TATGCATAACATTATAAACG+AGG | + | chr7_2:60936922-60936941 | None:intergenic | 25.0% |
| !! | ATTTTTACTAGCACATCATA+AGG | - | chr7_2:60937009-60937028 | Msa1066810:intron | 25.0% |
| !! | TACTCGTACTTTAAAAATGA+AGG | - | chr7_2:60937100-60937119 | Msa1066810:intron | 25.0% |
| ! | ATCTCTCAACAAATCATATA+AGG | - | chr7_2:60937220-60937239 | Msa1066810:intron | 25.0% |
| !! | GTGTTGTTATTTGAATTCAG+TGG | - | chr7_2:60935206-60935225 | Msa1066810:exon | 30.0% |
| ! | GTTGATGTGAATTTTGTGAT+TGG | - | chr7_2:60935272-60935291 | Msa1066810:CDS | 30.0% |
| ! | TAGGTCATGTTTTCACTTAT+AGG | - | chr7_2:60935306-60935325 | Msa1066810:intron | 30.0% |
| CAAATAGTTAGATCAATCTC+TGG | + | chr7_2:60935378-60935397 | None:intergenic | 30.0% | |
| AGTATAACCTTGTAATATCC+CGG | - | chr7_2:60935436-60935455 | Msa1066810:intron | 30.0% | |
| ! | TCTGCGATTACGATTTTTAA+GGG | + | chr7_2:60935535-60935554 | None:intergenic | 30.0% |
| ! | TTCTGCGATTACGATTTTTA+AGG | + | chr7_2:60935536-60935555 | None:intergenic | 30.0% |
| ! | AACTACTACTTTAGGAAGAA+AGG | + | chr7_2:60935747-60935766 | None:intergenic | 30.0% |
| AGTGAGATTCAGAATGAATT+TGG | - | chr7_2:60936182-60936201 | Msa1066810:CDS | 30.0% | |
| GAAGAAAACTTGACATTAGA+AGG | - | chr7_2:60936266-60936285 | Msa1066810:CDS | 30.0% | |
| AAACTTGACATTAGAAGGAT+TGG | - | chr7_2:60936271-60936290 | Msa1066810:CDS | 30.0% | |
| TATTCATGGAAAACAGTTTG+AGG | - | chr7_2:60936352-60936371 | Msa1066810:CDS | 30.0% | |
| ! | TTTTCAGTCAAACCAAAATC+TGG | + | chr7_2:60936392-60936411 | None:intergenic | 30.0% |
| !!! | TTTTGGTTTGACTGAAAAAG+AGG | - | chr7_2:60936394-60936413 | Msa1066810:CDS | 30.0% |
| ! | GGAAAGAATTGTATTTTGCA+GGG | + | chr7_2:60936436-60936455 | None:intergenic | 30.0% |
| TTTGACAGTGATAAATCATC+AGG | + | chr7_2:60936554-60936573 | None:intergenic | 30.0% | |
| AAAGAGCTTTACAACTTAAG+TGG | - | chr7_2:60936747-60936766 | Msa1066810:intron | 30.0% | |
| !! | GGTTGATAGTGTCAATTATT+TGG | - | chr7_2:60936947-60936966 | Msa1066810:intron | 30.0% |
| AGAGATTTATGTGTCTGTAT+AGG | + | chr7_2:60937206-60937225 | None:intergenic | 30.0% | |
| ! | GAATAACGGAATTCATAGTT+TGG | + | chr7_2:60937567-60937586 | None:intergenic | 30.0% |
| !! | TAATGAAGTGAGTGTTTTGA+TGG | - | chr7_2:60937724-60937743 | Msa1066810:five_prime_UTR | 30.0% |
| GTGATTGGAGTGAAAGAAAT+AGG | - | chr7_2:60935287-60935306 | Msa1066810:CDS | 35.0% | |
| ! | TTAGGGGCATGAAAATTTAG+AGG | - | chr7_2:60935345-60935364 | Msa1066810:intron | 35.0% |
| GTATAACCTTGTAATATCCC+GGG | - | chr7_2:60935437-60935456 | Msa1066810:intron | 35.0% | |
| TTCTACAAACATTTCCAGGA+GGG | + | chr7_2:60935474-60935493 | None:intergenic | 35.0% | |
| ATTCTACAAACATTTCCAGG+AGG | + | chr7_2:60935475-60935494 | None:intergenic | 35.0% | |
| TCCTGGAAATGTTTGTAGAA+TGG | - | chr7_2:60935474-60935493 | Msa1066810:intron | 35.0% | |
| ACCATTCTACAAACATTTCC+AGG | + | chr7_2:60935478-60935497 | None:intergenic | 35.0% | |
| ATTCCTTGTGTAAATAGGCA+CGG | + | chr7_2:60935628-60935647 | None:intergenic | 35.0% | |
| GAGTCATTCCTTGTGTAAAT+AGG | + | chr7_2:60935633-60935652 | None:intergenic | 35.0% | |
| TTATGAAGACAAAAGATGGC+AGG | - | chr7_2:60935927-60935946 | Msa1066810:CDS | 35.0% | |
| ! | AAGTTTTCATGCTTACTTGG+TGG | + | chr7_2:60936143-60936162 | None:intergenic | 35.0% |
| TAAGCATGAAAACTTGCCAT+TGG | - | chr7_2:60936148-60936167 | Msa1066810:CDS | 35.0% | |
| TCACTATAGTCAGTTTCCAA+TGG | + | chr7_2:60936167-60936186 | None:intergenic | 35.0% | |
| ! | TTTTCTTCATCCTTTCCACT+AGG | + | chr7_2:60936254-60936273 | None:intergenic | 35.0% |
| ! | GGGAAAGAATTGTATTTTGC+AGG | + | chr7_2:60936437-60936456 | None:intergenic | 35.0% |
| !!! | AGGGTTTTGTTTGTCATCTT+TGG | + | chr7_2:60936585-60936604 | None:intergenic | 35.0% |
| CAAAGGAGGCAAATACATTA+TGG | - | chr7_2:60936663-60936682 | Msa1066810:CDS | 35.0% | |
| !! | ATGAGTTTGTTGTACACAAC+TGG | + | chr7_2:60936991-60937010 | None:intergenic | 35.0% |
| TTATGTGTCTGTATAGGATG+AGG | + | chr7_2:60937200-60937219 | None:intergenic | 35.0% | |
| ACATCTTTGAGTCGAATCAT+GGG | + | chr7_2:60937343-60937362 | None:intergenic | 35.0% | |
| TCTTCCGCTGAAATTTAACT+CGG | - | chr7_2:60937406-60937425 | Msa1066810:intron | 35.0% | |
| TTCACCGAGTTAAATTTCAG+CGG | + | chr7_2:60937413-60937432 | None:intergenic | 35.0% | |
| !! | GCTTTTAGCCTTTTACCATA+TGG | + | chr7_2:60937447-60937466 | None:intergenic | 35.0% |
| ! | ATGTAACGTTTAAGAAGTGC+AGG | - | chr7_2:60937514-60937533 | Msa1066810:intron | 35.0% |
| CGGAATTCATAGTTTGGTAA+AGG | + | chr7_2:60937561-60937580 | None:intergenic | 35.0% | |
| TATTGTGTGTTCCTGTTATG+TGG | - | chr7_2:60937660-60937679 | Msa1066810:five_prime_UTR | 35.0% | |
| ! | TTTCCTTTTACTCTAGCTGT+AGG | - | chr7_2:60937759-60937778 | Msa1066810:five_prime_UTR | 35.0% |
| GCTGTTATTGGATCTTTCTG+TGG | - | chr7_2:60935138-60935157 | Msa1066810:three_prime_UTR | 40.0% | |
| ! | TGAGTTGAAGGATGATGACA+AGG | - | chr7_2:60936049-60936068 | Msa1066810:CDS | 40.0% |
| TTGAAGGATGATGACAAGGA+AGG | - | chr7_2:60936053-60936072 | Msa1066810:CDS | 40.0% | |
| ! | TCAAACGCCTTATTCATGTC+TGG | - | chr7_2:60936104-60936123 | Msa1066810:CDS | 40.0% |
| GAAGTGACCAGACATGAATA+AGG | + | chr7_2:60936114-60936133 | None:intergenic | 40.0% | |
| ! | TTCATGCTTACTTGGTGGAA+AGG | + | chr7_2:60936138-60936157 | None:intergenic | 40.0% |
| ! | GGCAAGTTTTCATGCTTACT+TGG | + | chr7_2:60936146-60936165 | None:intergenic | 40.0% |
| AGAAGGATTGGATGTGTCAA+AGG | - | chr7_2:60936283-60936302 | Msa1066810:CDS | 40.0% | |
| CATGGAAAACAGTTTGAGGA+AGG | - | chr7_2:60936356-60936375 | Msa1066810:CDS | 40.0% | |
| TTTCATTGCAGCAACAGTGA+TGG | - | chr7_2:60936691-60936710 | Msa1066810:intron | 40.0% | |
| TTCATTGCAGCAACAGTGAT+GGG | - | chr7_2:60936692-60936711 | Msa1066810:intron | 40.0% | |
| ! | GCAAGTCAGTATTTCTGATG+AGG | - | chr7_2:60936769-60936788 | Msa1066810:intron | 40.0% |
| CCTGTGGAAACAATCACTAT+TGG | + | chr7_2:60937300-60937319 | None:intergenic | 40.0% | |
| CCAATAGTGATTGTTTCCAC+AGG | - | chr7_2:60937297-60937316 | Msa1066810:intron | 40.0% | |
| CACATCTTTGAGTCGAATCA+TGG | + | chr7_2:60937344-60937363 | None:intergenic | 40.0% | |
| ! | GCTGAAATTTAACTCGGTGA+AGG | - | chr7_2:60937412-60937431 | Msa1066810:intron | 40.0% |
| ! | GAAATTTAACTCGGTGAAGG+TGG | - | chr7_2:60937415-60937434 | Msa1066810:intron | 40.0% |
| GGCTACTACCATATGGTAAA+AGG | - | chr7_2:60937436-60937455 | Msa1066810:intron | 40.0% | |
| CGAAAAGTTGTATGTCAGAG+AGG | - | chr7_2:60937478-60937497 | Msa1066810:intron | 40.0% | |
| TATGTCAGAGAGGTTGAGAA+TGG | - | chr7_2:60937488-60937507 | Msa1066810:intron | 40.0% | |
| ATGTCAGAGAGGTTGAGAAT+GGG | - | chr7_2:60937489-60937508 | Msa1066810:intron | 40.0% | |
| ! | AGAAGTGCAGGTTTGATACT+AGG | - | chr7_2:60937526-60937545 | Msa1066810:intron | 40.0% |
| GTGTTCCTGTTATGTGGAAT+TGG | - | chr7_2:60937666-60937685 | Msa1066810:five_prime_UTR | 40.0% | |
| AACTGCCAATTCCACATAAC+AGG | + | chr7_2:60937674-60937693 | None:intergenic | 40.0% | |
| !!! | TGAAGTGAGTGTTTTGATGG+CGG | - | chr7_2:60937727-60937746 | Msa1066810:five_prime_UTR | 40.0% |
| TAACCTTGTAATATCCCGGG+CGG | - | chr7_2:60935440-60935459 | Msa1066810:intron | 45.0% | |
| TCACCGTGCCTATTTACACA+AGG | - | chr7_2:60935622-60935641 | Msa1066810:intron | 45.0% | |
| CAATTATGCAAGGGAGAGCA+GGG | + | chr7_2:60935824-60935843 | None:intergenic | 45.0% | |
| ACAATTATGCAAGGGAGAGC+AGG | + | chr7_2:60935825-60935844 | None:intergenic | 45.0% | |
| ATGGCAGGAACTGAAGATGA+AGG | - | chr7_2:60935942-60935961 | Msa1066810:CDS | 45.0% | |
| TGGCAGGAACTGAAGATGAA+GGG | - | chr7_2:60935943-60935962 | Msa1066810:CDS | 45.0% | |
| !! | TCCACGTGAAGTTGAGTTGA+AGG | - | chr7_2:60936037-60936056 | Msa1066810:CDS | 45.0% |
| TCCTTCAACTCAACTTCACG+TGG | + | chr7_2:60936041-60936060 | None:intergenic | 45.0% | |
| CAAAGATATCGCCTCTGTAG+AGG | - | chr7_2:60936208-60936227 | Msa1066810:CDS | 45.0% | |
| TTCATCCTTTCCACTAGGCT+TGG | + | chr7_2:60936249-60936268 | None:intergenic | 45.0% | |
| GGATGTGTCAAAGGAGTTTG+AGG | - | chr7_2:60936292-60936311 | Msa1066810:CDS | 45.0% | |
| ! | GGCACAACTCTACCAGATTT+TGG | - | chr7_2:60936377-60936396 | Msa1066810:CDS | 45.0% |
| CAGCAATGTCTGTTTCACTG+GGG | + | chr7_2:60936457-60936476 | None:intergenic | 45.0% | |
| GCAGCAATGTCTGTTTCACT+GGG | + | chr7_2:60936458-60936477 | None:intergenic | 45.0% | |
| AGCAGCAATGTCTGTTTCAC+TGG | + | chr7_2:60936459-60936478 | None:intergenic | 45.0% | |
| AACCCTTCAGATCTTCCTTG+CGG | - | chr7_2:60936599-60936618 | Msa1066810:CDS | 45.0% | |
| CTTTGCATGAGCATAGATGG+AGG | + | chr7_2:60936648-60936667 | None:intergenic | 45.0% | |
| CTCCATCTATGCTCATGCAA+AGG | - | chr7_2:60936646-60936665 | Msa1066810:CDS | 45.0% | |
| CTCCTTTGCATGAGCATAGA+TGG | + | chr7_2:60936651-60936670 | None:intergenic | 45.0% | |
| CATCTATGCTCATGCAAAGG+AGG | - | chr7_2:60936649-60936668 | Msa1066810:CDS | 45.0% | |
| AGTGATTGTTTCCACAGGCA+AGG | - | chr7_2:60937302-60937321 | Msa1066810:intron | 45.0% | |
| CGACTCAAAGATGTGATCGT+TGG | - | chr7_2:60937349-60937368 | Msa1066810:intron | 45.0% | |
| CTCAAAGATGTGATCGTTGG+TGG | - | chr7_2:60937352-60937371 | Msa1066810:intron | 45.0% | |
| TTTCTCTGATCAAGGAGCCA+CGG | + | chr7_2:60937384-60937403 | None:intergenic | 45.0% | |
| GGAAGAGCTTTCTCTGATCA+AGG | + | chr7_2:60937392-60937411 | None:intergenic | 45.0% | |
| TGAAGGTGGCTACTACCATA+TGG | - | chr7_2:60937429-60937448 | Msa1066810:intron | 45.0% | |
| !!! | GAAGTGAGTGTTTTGATGGC+GGG | - | chr7_2:60937728-60937747 | Msa1066810:five_prime_UTR | 45.0% |
| GGACCTACAGCTAGAGTAAA+AGG | + | chr7_2:60937765-60937784 | None:intergenic | 45.0% | |
| !!! | TTTTTATACTATTATTATTA+TGG | + | chr7_2:60934884-60934903 | None:intergenic | 5.0% |
| !!! | GTTATTTTAATTTAATATTA+GGG | - | chr7_2:60935328-60935347 | Msa1066810:intron | 5.0% |
| !!! | TTATTTTAATTTAATATTAG+GGG | - | chr7_2:60935329-60935348 | Msa1066810:intron | 5.0% |
| AATCCGCCCGGGATATTACA+AGG | + | chr7_2:60935446-60935465 | None:intergenic | 50.0% | |
| ! | AGGAGGGTTTAAAATCCGCC+CGG | + | chr7_2:60935458-60935477 | None:intergenic | 50.0% |
| ACAAGCATGTGCAGGGTCAT+TGG | + | chr7_2:60935700-60935719 | None:intergenic | 50.0% | |
| ACAGCTCACAAGCATGTGCA+GGG | + | chr7_2:60935707-60935726 | None:intergenic | 50.0% | |
| GAGCAGGGCTCGACAAAAAA+AGG | + | chr7_2:60935809-60935828 | None:intergenic | 50.0% | |
| GGCAGGAACTGAAGATGAAG+GGG | - | chr7_2:60935944-60935963 | Msa1066810:CDS | 50.0% | |
| GAAGGGGAAAAGTCTTCTCG+CGG | - | chr7_2:60935960-60935979 | Msa1066810:CDS | 50.0% | |
| AGTCTTCTCGCGGTAATGAC+TGG | - | chr7_2:60935970-60935989 | Msa1066810:CDS | 50.0% | |
| GTCTTCTCGCGGTAATGACT+GGG | - | chr7_2:60935971-60935990 | Msa1066810:CDS | 50.0% | |
| TCAACTTATGCAGCTGCTCC+TGG | - | chr7_2:60936014-60936033 | Msa1066810:CDS | 50.0% | |
| AACTCAACTTCACGTGGACC+AGG | + | chr7_2:60936035-60936054 | None:intergenic | 50.0% | |
| TTCTTCACGAGCCTCTACAG+AGG | + | chr7_2:60936222-60936241 | None:intergenic | 50.0% | |
| AACAACCGAATCAGCAGAGC+AGG | - | chr7_2:60936514-60936533 | Msa1066810:CDS | 50.0% | |
| ! | TGTCTCCTGCTCTGCTGATT+CGG | + | chr7_2:60936522-60936541 | None:intergenic | 50.0% |
| ATCAGCAGAGCAGGAGACAA+AGG | - | chr7_2:60936523-60936542 | Msa1066810:CDS | 50.0% | |
| CTCCGCAAGGAAGATCTGAA+GGG | + | chr7_2:60936604-60936623 | None:intergenic | 50.0% | |
| !! | TGCAGCAACAGTGATGGGTT+TGG | - | chr7_2:60936697-60936716 | Msa1066810:intron | 50.0% |
| !! | GTGATGGGTTTGGTGATGCT+TGG | - | chr7_2:60936707-60936726 | Msa1066810:intron | 50.0% |
| CGCGACACGATGTTCGTAGT+GGG | + | chr7_2:60934962-60934981 | None:intergenic | 55.0% | |
| ACGCGACACGATGTTCGTAG+TGG | + | chr7_2:60934963-60934982 | None:intergenic | 55.0% | |
| CATCGTGTCGCGTTCATCTC+TGG | - | chr7_2:60934970-60934989 | Msa1066810:three_prime_UTR | 55.0% | |
| ! | GGAGGGTTTAAAATCCGCCC+GGG | + | chr7_2:60935457-60935476 | None:intergenic | 55.0% |
| !! | GGGCGGATTTTAAACCCTCC+TGG | - | chr7_2:60935457-60935476 | Msa1066810:intron | 55.0% |
| CACAGCTCACAAGCATGTGC+AGG | + | chr7_2:60935708-60935727 | None:intergenic | 55.0% | |
| TTCTCGCGGTAATGACTGGG+AGG | - | chr7_2:60935974-60935993 | Msa1066810:CDS | 55.0% | |
| GAAGAAGCGACCAAGCCTAG+TGG | - | chr7_2:60936236-60936255 | Msa1066810:CDS | 55.0% | |
| AGCGACCAAGCCTAGTGGAA+AGG | - | chr7_2:60936241-60936260 | Msa1066810:CDS | 55.0% | |
| GCTCCGCAAGGAAGATCTGA+AGG | + | chr7_2:60936605-60936624 | None:intergenic | 55.0% | |
| CAGATCTTCCTTGCGGAGCT+TGG | - | chr7_2:60936606-60936625 | Msa1066810:CDS | 55.0% | |
| ATCTTCCTTGCGGAGCTTGG+TGG | - | chr7_2:60936609-60936628 | Msa1066810:CDS | 55.0% | |
| ! | TGGTGATGCTTGGTCAACGC+TGG | - | chr7_2:60936717-60936736 | Msa1066810:intron | 55.0% |
| TGTTTCCACAGGCAAGGAGC+AGG | - | chr7_2:60937308-60937327 | Msa1066810:intron | 55.0% | |
| AGCATCCTGCTCCTTGCCTG+TGG | + | chr7_2:60937316-60937335 | None:intergenic | 60.0% | |
| CTCTGATCAAGGAGCCACGG+CGG | + | chr7_2:60937381-60937400 | None:intergenic | 60.0% | |
| CGCTTCCACCAAGCTCCGCA+AGG | + | chr7_2:60936617-60936636 | None:intergenic | 65.0% | |
| ! | TGCGGAGCTTGGTGGAAGCG+AGG | - | chr7_2:60936617-60936636 | Msa1066810:CDS | 65.0% |
| GCTTGGTCAACGCTGGCGAC+AGG | - | chr7_2:60936724-60936743 | Msa1066810:intron | 65.0% | |
| TGATCAAGGAGCCACGGCGG+TGG | + | chr7_2:60937378-60937397 | None:intergenic | 65.0% | |
| !! | ATCGTTGGTGGCCACCGCCG+TGG | - | chr7_2:60937364-60937383 | Msa1066810:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 60934848 | 60937785 | 60934848 | ID=Msa1066810;Name=Msa1066810 |
| chr7_2 | mRNA | 60934848 | 60937785 | 60934848 | ID=Msa1066810-mRNA-1;Parent=Msa1066810;Name=Msa1066810-mRNA-1;_AED=0.05;_eAED=0.05;_QI=151|0.33|0.75|0.75|0.66|0.5|4|362|338 |
| chr7_2 | exon | 60934848 | 60935314 | 60934848 | ID=Msa1066810-mRNA-1:exon:12169;Parent=Msa1066810-mRNA-1 |
| chr7_2 | exon | 60935392 | 60935454 | 60935392 | ID=Msa1066810-mRNA-1:exon:12168;Parent=Msa1066810-mRNA-1 |
| chr7_2 | exon | 60935843 | 60936698 | 60935843 | ID=Msa1066810-mRNA-1:exon:12167;Parent=Msa1066810-mRNA-1 |
| chr7_2 | exon | 60937642 | 60937785 | 60937642 | ID=Msa1066810-mRNA-1:exon:12166;Parent=Msa1066810-mRNA-1 |
| chr7_2 | five_prime_UTR | 60937642 | 60937785 | 60937642 | ID=Msa1066810-mRNA-1:five_prime_utr;Parent=Msa1066810-mRNA-1 |
| chr7_2 | five_prime_UTR | 60936692 | 60936698 | 60936692 | ID=Msa1066810-mRNA-1:five_prime_utr;Parent=Msa1066810-mRNA-1 |
| chr7_2 | CDS | 60935843 | 60936691 | 60935843 | ID=Msa1066810-mRNA-1:cds;Parent=Msa1066810-mRNA-1 |
| chr7_2 | CDS | 60935392 | 60935454 | 60935392 | ID=Msa1066810-mRNA-1:cds;Parent=Msa1066810-mRNA-1 |
| chr7_2 | CDS | 60935210 | 60935314 | 60935210 | ID=Msa1066810-mRNA-1:cds;Parent=Msa1066810-mRNA-1 |
| chr7_2 | three_prime_UTR | 60934848 | 60935209 | 60934848 | ID=Msa1066810-mRNA-1:three_prime_utr;Parent=Msa1066810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
