AlfalfaGEDB | Msa1119840

M. sativa cultivar zhongmu-4 / Msa1119840

KEGG: -
GO: -
PFAM: PF00097.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119840	XP_003624500.1	97.043	744	21	1	1	743	1	744	0.0	1504

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119840	sp\|Q32NQ8\|RNF10_XENLA	31.325	498	279	14	138	608	121	582	3.76e-62	225

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119840	G7KX94	97.043	744	21	1	1	743	1	744	0.0	1504

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037250	Msa1119840	-0.813493	2.488891e-51	-8.615850e-47
Msa0056470	Msa1119840	-0.827074	1.912244e-54	-8.615850e-47
Msa0310030	Msa1119840	-0.818982	1.475024e-52	-8.615850e-47
Msa0336010	Msa1119840	-0.808886	2.484224e-50	-8.615850e-47
Msa0378490	Msa1119840	-0.814011	1.913812e-51	-8.615850e-47
Msa0427150	Msa1119840	-0.853787	1.896622e-61	-8.615850e-47
Msa0521050	Msa1119840	-0.807519	4.857693e-50	-8.615850e-47
Msa0661300	Msa1119840	-0.819948	8.883597e-53	-8.615850e-47
Msa0666560	Msa1119840	0.813355	2.669658e-51	-8.615850e-47
Msa1069980	Msa1119840	0.938163	1.058499e-98	-8.615850e-47

Showing 1 to 10 of 16 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119840	MtrunA17_Chr7g0252141	97.043	744	21	1	1	743	1	744	0.0	1504

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119840	AT3G26730.1	55.167	629	255	8	131	743	155	772	0.0	661
Msa1119840	AT3G26730.8	56.131	579	230	7	131	693	155	725	0.0	625
Msa1119840	AT3G26730.5	57.113	478	184	5	131	595	155	624	0.0	550
Msa1119840	AT3G26730.7	57.113	478	184	5	131	595	155	624	0.0	550
Msa1119840	AT3G26730.3	57.113	478	184	5	131	595	155	624	0.0	550
Msa1119840	AT3G26730.6	57.113	478	184	5	131	595	155	624	0.0	550
Msa1119840	AT3G26730.2	56.757	444	171	5	131	561	155	590	2.26e-170	504
Msa1119840	AT3G26730.4	56.757	444	171	5	131	561	155	590	2.26e-170	504

Showing 1 to 8 of 8 entries

Previous1Next

Find 228 sgRNAs with CRISPR-Local

Find 511 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTACCTGAAATATTG+TGG	0.577886	7_3:-68998263	None:intergenic
AAACAAATTGGACACTGAAC+TGG	0.371740	7_3:-68995248	None:intergenic
AAACATTGTGCCTGAAGTCG+TGG	0.632408	7_3:-69000126	None:intergenic
AAACGGAACCTGGGTAATCG+TGG	0.604045	7_3:-68994164	None:intergenic
AAACTGATAATGGGTTGACA+TGG	0.597996	7_3:-68999180	None:intergenic
AAAGGGGCCAGTGCTTCAGG+AGG	0.687060	7_3:-68998412	None:intergenic
AAAGTCATCCATGGAGAACG+TGG	0.592121	7_3:-68999222	None:intergenic
AAATGGAAAGATTCTACAAT+TGG	0.391791	7_3:+68998177	Msa1119840:CDS
AAATTAGGGTTAGGGATTGA+AGG	0.448111	7_3:-68994078	None:intergenic
AAATTATTCACCCGAGTCAA+TGG	0.466242	7_3:+68995166	Msa1119840:CDS

Showing 1 to 10 of 228 entries

Previous1 2 3 4 5…23Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CATGTTGTAAATTAGGGTTA+GGG	-	chr7_3:68994089-68994108	None:intergenic	30.0%
GAATTTGGGTACTAAATCAA+TGG	+	chr7_3:68994263-68994282	Msa1119840:intron	30.0%
ATTTGGGTACTAAATCAATG+GGG	+	chr7_3:68994265-68994284	Msa1119840:intron	30.0%
TCTTTCAAAACATGCATTTC+AGG	-	chr7_3:68994669-68994688	None:intergenic	30.0%
AATGTGAAACAGTATCAAGT+AGG	+	chr7_3:68995443-68995462	Msa1119840:CDS	30.0%
CAAGCATTTGTAGATATTGA+TGG	-	chr7_3:68995815-68995834	None:intergenic	30.0%
CATCAATATCTACAAATGCT+TGG	+	chr7_3:68995813-68995832	Msa1119840:CDS	30.0%
ATTACAACCTTACTTTGATC+GGG	-	chr7_3:68995893-68995912	None:intergenic	30.0%
ATATTGGATAAATCAACTGC+TGG	+	chr7_3:68995911-68995930	Msa1119840:CDS	30.0%
GAGGAGAAAAATTGTATTCA+AGG	+	chr7_3:68996007-68996026	Msa1119840:CDS	30.0%

Showing 1 to 10 of 511 entries

Previous1 2 3 4 5…52Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	68993854	69000312	68993854	ID=Msa1119840;Name=Msa1119840
chr7_3	mRNA	68993854	69000312	68993854	ID=Msa1119840-mRNA-1;Parent=Msa1119840;Name=Msa1119840-mRNA-1;_AED=0.05;_eAED=0.05;_QI=173\|1\|1\|1\|1\|1\|9\|288\|743
chr7_3	exon	68993854	68994177	68993854	ID=Msa1119840-mRNA-1:exon:17336;Parent=Msa1119840-mRNA-1
chr7_3	exon	68994548	68994594	68994548	ID=Msa1119840-mRNA-1:exon:17337;Parent=Msa1119840-mRNA-1
chr7_3	exon	68994795	68996084	68994795	ID=Msa1119840-mRNA-1:exon:17338;Parent=Msa1119840-mRNA-1
chr7_3	exon	68997387	68997475	68997387	ID=Msa1119840-mRNA-1:exon:17339;Parent=Msa1119840-mRNA-1
chr7_3	exon	68998174	68998276	68998174	ID=Msa1119840-mRNA-1:exon:17340;Parent=Msa1119840-mRNA-1
chr7_3	exon	68998382	68998486	68998382	ID=Msa1119840-mRNA-1:exon:17341;Parent=Msa1119840-mRNA-1
chr7_3	exon	68999131	68999248	68999131	ID=Msa1119840-mRNA-1:exon:17342;Parent=Msa1119840-mRNA-1
chr7_3	exon	68999576	68999749	68999576	ID=Msa1119840-mRNA-1:exon:17343;Parent=Msa1119840-mRNA-1
chr7_3	exon	68999870	69000312	68999870	ID=Msa1119840-mRNA-1:exon:17344;Parent=Msa1119840-mRNA-1
chr7_3	five_prime_UTR	68993854	68994026	68993854	ID=Msa1119840-mRNA-1:five_prime_utr;Parent=Msa1119840-mRNA-1
chr7_3	CDS	68994027	68994177	68994027	ID=Msa1119840-mRNA-1:cds;Parent=Msa1119840-mRNA-1
chr7_3	CDS	68994548	68994594	68994548	ID=Msa1119840-mRNA-1:cds;Parent=Msa1119840-mRNA-1
chr7_3	CDS	68994795	68996084	68994795	ID=Msa1119840-mRNA-1:cds;Parent=Msa1119840-mRNA-1
chr7_3	CDS	68997387	68997475	68997387	ID=Msa1119840-mRNA-1:cds;Parent=Msa1119840-mRNA-1
chr7_3	CDS	68998174	68998276	68998174	ID=Msa1119840-mRNA-1:cds;Parent=Msa1119840-mRNA-1
chr7_3	CDS	68998382	68998486	68998382	ID=Msa1119840-mRNA-1:cds;Parent=Msa1119840-mRNA-1
chr7_3	CDS	68999131	68999248	68999131	ID=Msa1119840-mRNA-1:cds;Parent=Msa1119840-mRNA-1
chr7_3	CDS	68999576	68999749	68999576	ID=Msa1119840-mRNA-1:cds;Parent=Msa1119840-mRNA-1
chr7_3	CDS	68999870	69000024	68999870	ID=Msa1119840-mRNA-1:cds;Parent=Msa1119840-mRNA-1
chr7_3	three_prime_UTR	69000025	69000312	69000025	ID=Msa1119840-mRNA-1:three_prime_utr;Parent=Msa1119840-mRNA-1

Gene Sequence

>Msa1119840

ATGTCCATCTTGCCCTCACAAACCCAATCGTCATCTTCATCTTCTCAAAATCCTTCAATCCCTAACCCTAATTTACAACATGGAATTTCAGATTCTCTTTCCCCTTTACTCCACCACTCTCTCGGATCTCTACAGATCCACGATTACCCAGGTCCATCAACTCCTGCTGCAGAAAATTCTGGTGGGCCCTCCGAAAAGGTGACGGAATTAGACTCTTCAAGTGGTATGAAGACACCTCAACGAAACTCTAGAACACACTCTAGGAGTCACTCAGGAAGACGGACAGTTGGATCTTCCCAATATGAGGGGAAGACAACAGGAACAGTTTCTTCTCATAGAAACCAACAGACTACCGGGTCTGTATATTCTCAAGGAAGCACCCCATTGGCAGGAAGGAAGTCTCAAATGGCGAATGCCAATCACTTGCTCAATTTTCAGTATGATCCAATATCCCGTTCTCAACAAAGGGGTCCTCCTCCCCCTCCAGCACGGAGGCAGAGGAAGACAAGACCATACAACAAAGATTTGTTTTTGCAGGCCAATTTCAAATTCATGGTGCTGGATTCTGGAAATTATTCACCCGAGTCAATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACATATTCGACCCCCTTTCCAGTTCAGTGTCCAATTTGTTTGGAGCATCCCCTGTGTCCCCAAATAACCTCATGTGGACACATTTTCTGTTTCCCATGTATACTACAATACTTGATGTTGGGTGAAGAGGATCACAAAGGTGATCGCTGGAAAAGGTGTCCGCTGTGCTTTGTGACGATATCTGTCAAGGATTTATATACACTCCACATCACAAATGTGAAACAGTATCAAGTAGGAGATAATATTGAGTTCACTTTCTTAACGAGGAAGAAGGATTCATTTACTCTTTCACATAAAAATAAACAAGAGGGCGATAATTCATCATGTGGCCAAGGCGATGTATGTGACCCCTTTTCCAAGTTCACACTCACGTCAGATGTAGATCTCTCAGTGAGACATGCAATATCAGATCTAGACGGTTGGCTGGCCAGAGCTGATTCAGGTCTTGTTGATGACCTGGAGAAGCTTCCATATGTTAGTGCTGCGATGCAGCAGTTAAAGCAGAGAAAGAAGTATTGGAATGAGCACAAGGCTTGTTATAGTGAAAAATCTTCTAACCTCATTGATCATGCACCCCAGACACCATCAATATCTACAAATGCTTGGGATAGTGACGACGAAAGCTGTTCTAATGGATCAAGAACTTCCTCTACTGATTTCCCCGATCAAAGTAAGGTTGTAATATTGGATAAATCAACTGCTGGAACCTGTCAGGATGTAACTTTGGATGTGGACAAGGTACTAGCTGAGAAGGAGATAAATTTTTCTTCTTCGTATGAGGAGAAAAATTGTATTCAAGGGCATTCTAATGGCATTGGAGATGCAAAGGAAAATGATTCGTACAATTTCTATCAGGCCGCGGATGGTCAACATCTAATTCTTCATCCTTTGAACACAAAGTGTTTACTGTATCATTATGGTAGCTATGATAAGCTTCCTCACAGAATAAATGGAAAGATTCTACAATTGGAGACAGTTACTCAATCTGAGGCTATGAGGAGGCGGTATCGATTTTTAAGTCATTTTCCGCTAACCACAATATTTCAGCTTTGTGAAGTTGATTTGAGTGAGATGTTACCTCCTGAAGCACTGGCCCCTTTTATGGATGAAATAAAGAAACGTGCAAACCAGAGGAAGCAACTTGCAAAGAAGGAACAAAAGGAAAAATTGAAGGCCGAAGCTACTGATAATTATGCTCTTTCCATGTCAACCCATTATCAGTTTATTTCTCGTGATGATCCTCCCACGTTCTCCATGGATGACTTTGAAGCTCTGGGAAATTCAGCTTTGTCAACAAGTCCTCCGGTTGTTGGTGAGAGGAAATTGTTCTCAAGTGTTACTAGGCTTGGTTTTGCCGCTGGCCATGATTCTCCATCCTTTCCTACTCAAGAAACTAGCGATCTACATAGTAACAATTCAATTGCTGGTTCTTCTGGTACAGCAGGTTTGAGGAATGGGGAGACACTATCATACTCCAATGTCATATCTAGAGCAGAATCTAATGGAATTTCGAATGCACCGAAGACAAATGACTTAGGAAAGAAGGGAAAGAAACCAAATCGAGTTCTTCTGTCAACATCTGGTGGCAGGCGTTATTGA

Protein sequence

>Msa1119840

MSILPSQTQSSSSSSQNPSIPNPNLQHGISDSLSPLLHHSLGSLQIHDYPGPSTPAAENSGGPSEKVTELDSSSGMKTPQRNSRTHSRSHSGRRTVGSSQYEGKTTGTVSSHRNQQTTGSVYSQGSTPLAGRKSQMANANHLLNFQYDPISRSQQRGPPPPPARRQRKTRPYNKDLFLQANFKFMVLDSGNYSPESMDPDKMLQWEDIICVTYSTPFPVQCPICLEHPLCPQITSCGHIFCFPCILQYLMLGEEDHKGDRWKRCPLCFVTISVKDLYTLHITNVKQYQVGDNIEFTFLTRKKDSFTLSHKNKQEGDNSSCGQGDVCDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVSAAMQQLKQRKKYWNEHKACYSEKSSNLIDHAPQTPSISTNAWDSDDESCSNGSRTSSTDFPDQSKVVILDKSTAGTCQDVTLDVDKVLAEKEINFSSSYEEKNCIQGHSNGIGDAKENDSYNFYQAADGQHLILHPLNTKCLLYHYGSYDKLPHRINGKILQLETVTQSEAMRRRYRFLSHFPLTTIFQLCEVDLSEMLPPEALAPFMDEIKKRANQRKQLAKKEQKEKLKAEATDNYALSMSTHYQFISRDDPPTFSMDDFEALGNSALSTSPPVVGERKLFSSVTRLGFAAGHDSPSFPTQETSDLHSNNSIAGSSGTAGLRNGETLSYSNVISRAESNGISNAPKTNDLGKKGKKPNRVLLSTSGGRRY*