AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0661300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0661300 MtrunA17_Chr1g0147821 97.368 190 1 2 1 186 1 190 5.84e-121 339
Msa0661300 MtrunA17_Chr8g0365051 75.135 185 36 6 1 176 1 184 6.71e-68 205
Msa0661300 MtrunA17_Chr3g0139061 77.500 200 30 3 1 186 1 199 2.24e-57 179
Msa0661300 MtrunA17_Chr7g0263341 33.333 222 84 7 2 168 11 223 3.21e-13 66.6
Msa0661300 MtrunA17_Chr7g0269331 43.750 96 41 4 4 92 9 98 2.53e-12 63.9
Msa0661300 MtrunA17_Chr1g0210241 35.433 127 61 4 2 108 7 132 2.62e-11 60.8
Msa0661300 MtrunA17_Chr7g0272311 47.945 73 32 2 4 70 9 81 3.27e-11 60.8
Msa0661300 MtrunA17_Chr3g0127781 46.575 73 33 2 4 70 9 81 4.54e-11 60.1
Msa0661300 MtrunA17_Chr3g0080801 33.077 130 82 1 2 126 68 197 8.14e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0661300 AT4G31580.2 69.000 200 48 3 1 186 1 200 3.02e-71 214
Msa0661300 AT4G31580.1 69.000 200 48 3 1 186 1 200 3.02e-71 214
Msa0661300 AT2G24590.1 72.449 196 44 4 1 186 1 196 1.19e-63 195
Msa0661300 AT1G23860.4 65.476 168 48 4 1 166 1 160 6.13e-46 149
Msa0661300 AT1G23860.1 63.529 170 52 5 1 166 1 164 2.21e-45 148
Msa0661300 AT1G23860.2 63.529 170 52 5 1 166 1 164 2.21e-45 148
Msa0661300 AT1G23860.3 72.222 108 26 1 1 108 1 104 3.38e-44 144
Msa0661300 AT1G60650.2 36.585 123 66 2 2 112 12 134 3.03e-14 69.7
Msa0661300 AT1G60650.1 36.585 123 66 2 2 112 12 134 3.03e-14 69.7
Msa0661300 AT3G53500.2 32.653 245 83 9 2 177 11 242 1.96e-13 67.4
Msa0661300 AT1G02840.1 50.000 74 29 3 4 70 9 81 5.88e-13 66.2
Msa0661300 AT1G02840.4 50.000 74 29 3 4 70 9 81 9.35e-13 65.1
Msa0661300 AT1G02840.5 50.000 74 29 3 4 70 9 81 9.35e-13 65.1
Msa0661300 AT1G02840.3 50.000 74 29 3 4 70 9 81 9.35e-13 65.1
Msa0661300 AT1G02840.2 50.000 74 29 3 4 70 9 81 2.41e-12 64.3
Msa0661300 AT4G02430.1 45.455 77 34 3 4 73 9 84 9.73e-12 61.2
Msa0661300 AT2G37340.1 39.450 109 59 3 2 108 11 114 1.37e-11 62.0
Msa0661300 AT4G02430.3 45.455 77 34 3 4 73 9 84 3.88e-11 60.8
Msa0661300 AT4G02430.4 45.455 77 34 3 4 73 9 84 8.60e-11 60.1

Find 83 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGGGAATAGTGAGATTT+TGG 0.237194 4_3:-72507808 Msa0661300:three_prime_UTR
GGTGGTGGCGGCGGCGGTGG+TGG 0.290525 4_3:-72509014 Msa0661300:CDS
AGGTGACACGCTGCGGCGCC+TGG 0.293523 4_3:+72508408 None:intergenic
GGTGGCGGCGGCGGTGGTGG+AGG 0.354991 4_3:-72509011 Msa0661300:CDS
AGTGGTGGTGGCGGCGGCGG+TGG 0.365151 4_3:-72509017 Msa0661300:CDS
GTATATGCAGAAATGGCATT+AGG 0.366155 4_3:-72507881 Msa0661300:intron
TCGTGTGTACGTGGGTAATC+TGG 0.366370 4_3:-72511370 Msa0661300:CDS
TGCGACATTCACGAGCAAAA+TGG 0.370957 4_3:+72508931 None:intergenic
TTCAAAATTAACTTCTGCTT+CGG 0.370967 4_3:+72507850 None:intergenic
TCGTGTTCTCGCCGCTAGCT+AGG 0.390310 4_3:-72511586 Msa0661300:five_prime_UTR
GAGGAGGTGCCATATGCTAA+TGG 0.408138 4_3:-72508340 Msa0661300:CDS
TTCGCAGGAGTCCAAGTTAT+GGG 0.409234 4_3:-72508857 Msa0661300:CDS
AGAAGTGGTGGTGGCGGCGG+CGG 0.411462 4_3:-72509020 Msa0661300:CDS
ATGTTGTGTTTGCAGTGTTT+GGG 0.412023 4_3:-72510433 Msa0661300:intron
TCTAACCTTCGCCCATAACT+TGG 0.420005 4_3:+72508846 None:intergenic
GGAGGTCGTGGTCGTGGCGG+CGG 0.422133 4_3:-72508993 Msa0661300:CDS
TATATGCAGAAATGGCATTA+GGG 0.429730 4_3:-72507880 Msa0661300:intron
CGTGTTCTCGCCGCTAGCTA+GGG 0.437073 4_3:-72511585 Msa0661300:five_prime_UTR
ATCGAGGTGGACTGCGGCTA+CGG 0.452274 4_3:+72508880 None:intergenic
GGTCGTGGTCGTGGCGGCGG+CGG 0.452453 4_3:-72508990 Msa0661300:CDS
GGTGACACGCTGCGGCGCCT+GGG 0.452893 4_3:+72508409 None:intergenic
GGCGGCGGTGGTGGAGGTCG+TGG 0.460146 4_3:-72509005 Msa0661300:CDS
GTGACACGCTGCGGCGCCTG+GGG 0.468230 4_3:+72508410 None:intergenic
TCTAGAAGTGGTGGTGGCGG+CGG 0.468832 4_3:-72509023 Msa0661300:CDS
GGTGGTGGAGGTCGTGGTCG+TGG 0.472836 4_3:-72508999 Msa0661300:CDS
TTTCGCAGGAGTCCAAGTTA+TGG 0.489373 4_3:-72508858 Msa0661300:CDS
AGGAGGTGCCATATGCTAAT+GGG 0.493730 4_3:-72508339 Msa0661300:intron
CAAGTATTAAGCAAAGATAC+AGG 0.510893 4_3:+72507681 None:intergenic
ATAACTAACCCATTAGCATA+TGG 0.513320 4_3:+72508331 None:intergenic
GATGCTATACGCGATCTAGA+TGG 0.514035 4_3:-72510351 Msa0661300:intron
TGTTATGAGTGTGGTGAACC+TGG 0.515250 4_3:-72508954 Msa0661300:CDS
ACCTCCTCACGCCCACGGTA+AGG 0.515427 4_3:+72508355 None:intergenic
AACGATGTCTCGTGTGTACG+TGG 0.515828 4_3:-72511379 Msa0661300:exon
ATTAACTTCTGCTTCGGCGT+CGG 0.515869 4_3:+72507856 None:intergenic
GTCAGTGAGAGCAATTATTG+AGG 0.526754 4_3:-72507825 Msa0661300:three_prime_UTR
TGTCGCAATCGTGGTGGTGG+TGG 0.529392 4_3:-72508915 Msa0661300:CDS
TTCTGTGTAACAGGCAAGAA+TGG 0.536794 4_3:-72509071 Msa0661300:intron
AATTCTAGAAGTGGTGGTGG+CGG 0.541335 4_3:-72509026 Msa0661300:CDS
TGATGACCGCAGAGATGCAC+AGG 0.545051 4_3:-72510373 Msa0661300:CDS
TCCTTACCGTGGGCGTGAGG+AGG 0.547639 4_3:-72508356 Msa0661300:CDS
TGGGTTGCTCGAAGACCACC+TGG 0.550517 4_3:-72510414 Msa0661300:CDS
CACAATTCTAGAAGTGGTGG+TGG 0.553562 4_3:-72509029 Msa0661300:CDS
TCACGCCCACGGTAAGGAGG+TGG 0.554871 4_3:+72508361 None:intergenic
TCAGTGAGAGCAATTATTGA+GGG 0.555148 4_3:-72507824 Msa0661300:three_prime_UTR
GTGTAACAGGCAAGAATGGT+TGG 0.559187 4_3:-72509067 Msa0661300:intron
CATTCACGAGCAAAATGGCC+AGG 0.561096 4_3:+72508936 None:intergenic
GAATGTCGCAATCGTGGTGG+TGG 0.564770 4_3:-72508918 Msa0661300:CDS
GCAGTCCACCTCGATTTCGC+AGG 0.566410 4_3:-72508872 Msa0661300:CDS
AGTCTCAGAGAGGGACCTTG+AGG 0.566930 4_3:-72511340 Msa0661300:CDS
CTTTCTCACAATTCTAGAAG+TGG 0.567201 4_3:-72509035 Msa0661300:CDS
ACCTCCTTACCGTGGGCGTG+AGG 0.571158 4_3:-72508359 Msa0661300:CDS
CTCGTGGACGTAGCTACAGC+AGG 0.573406 4_3:-72508387 Msa0661300:CDS
AAGTCAATAAAAGCATAGCC+AGG 0.586577 4_3:+72510396 None:intergenic
GGAGTCCAAGTTATGGGCGA+AGG 0.589847 4_3:-72508851 Msa0661300:intron
AAGCAATTACTTAAAATAGA+CGG 0.590512 4_3:+72507640 None:intergenic
CGCCGCAGCGTGTCACCTCG+TGG 0.590625 4_3:-72508403 Msa0661300:CDS
CTTGGACTCCTGCGAAATCG+AGG 0.595739 4_3:+72508864 None:intergenic
GATTTGAAGTGTTATGAGTG+TGG 0.598609 4_3:-72508963 Msa0661300:CDS
TCTCACAATTCTAGAAGTGG+TGG 0.600012 4_3:-72509032 Msa0661300:CDS
AGGTCACCACCTCCTTACCG+TGG 0.601922 4_3:-72508367 Msa0661300:CDS
TAACAGGCAAGAATGGTTGG+AGG 0.608447 4_3:-72509064 Msa0661300:intron
GCTCGTGAATGTCGCAATCG+TGG 0.611165 4_3:-72508924 Msa0661300:CDS
CCAATACAACAGTAAAACTC+AGG 0.612424 4_3:+72507738 None:intergenic
GGTGGAGGTCGTGGTCGTGG+CGG 0.619805 4_3:-72508996 Msa0661300:CDS
TCCTCACGCCCACGGTAAGG+AGG 0.623016 4_3:+72508358 None:intergenic
CCAGGAGTTACAGTCCTCGT+GGG 0.630414 4_3:-72508438 Msa0661300:intron
ACCAGGAGTTACAGTCCTCG+TGG 0.630825 4_3:-72508439 Msa0661300:intron
GGTCACCACCTCCTTACCGT+GGG 0.634356 4_3:-72508366 Msa0661300:CDS
ATGGCACCTCCTCACGCCCA+CGG 0.635291 4_3:+72508350 None:intergenic
AAACACGAAATTCATCCTCA+AGG 0.640455 4_3:+72511325 None:intergenic
GGAGTTACAGTCCTCGTGGG+CGG 0.645283 4_3:-72508435 Msa0661300:CDS
ACGATGTCTCGTGTGTACGT+GGG 0.656849 4_3:-72511378 Msa0661300:CDS
GGATTCTAGAGTCTCAGAGA+GGG 0.661005 4_3:-72511349 Msa0661300:CDS
AACAGGCAAGAATGGTTGGA+GGG 0.663974 4_3:-72509063 Msa0661300:intron
GTCCACGAGGTGACACGCTG+CGG 0.671063 4_3:+72508401 None:intergenic
GGACTCCTGCGAAATCGAGG+TGG 0.673792 4_3:+72508867 None:intergenic
TGACACGCTGCGGCGCCTGG+GGG 0.679479 4_3:+72508411 None:intergenic
TGCGAAATCGAGGTGGACTG+CGG 0.679589 4_3:+72508874 None:intergenic
CTGCTGTAGCTACGTCCACG+AGG 0.684355 4_3:+72508388 None:intergenic
CGTGAATGTCGCAATCGTGG+TGG 0.699969 4_3:-72508921 Msa0661300:CDS
TGGATTCTAGAGTCTCAGAG+AGG 0.702659 4_3:-72511350 Msa0661300:CDS
TCAATAAAAGCATAGCCAGG+TGG 0.704252 4_3:+72510399 None:intergenic
TAGCATCCTGTGCATCTCTG+CGG 0.708826 4_3:+72510367 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGAAGAAAAAAAAAATA+TGG - chr4_3:72508184-72508203 Msa0661300:intron 10.0%
!! AAAAAAAAAATATGGAAATA+GGG - chr4_3:72508192-72508211 Msa0661300:intron 10.0%
!!! ATAAAAATTATGTTTTTGTT+TGG - chr4_3:72508717-72508736 Msa0661300:intron 10.0%
!!! TAAAAATTATGTTTTTGTTT+GGG - chr4_3:72508718-72508737 Msa0661300:intron 10.0%
!! GAAAAAAAAAATATGGAAAT+AGG - chr4_3:72508191-72508210 Msa0661300:intron 15.0%
!!! AATTATGATTAATCTTGTTT+TGG - chr4_3:72508793-72508812 Msa0661300:intron 15.0%
!! AAAATATATGCAACATTAAA+CGG + chr4_3:72509902-72509921 None:intergenic 15.0%
!!! ATAATTTTTAACCTTGAAAA+AGG + chr4_3:72510068-72510087 None:intergenic 15.0%
!!! TTAATGATCATGTTTTATTA+TGG - chr4_3:72510516-72510535 Msa0661300:intron 15.0%
!! ACAAATAAACATTATATAGT+TGG - chr4_3:72511274-72511293 Msa0661300:intron 15.0%
!!! TAACTTGATTTTTCATGTAA+AGG - chr4_3:72508082-72508101 Msa0661300:intron 20.0%
!! TAAATTGAATTCTCAAAAGT+TGG + chr4_3:72508491-72508510 None:intergenic 20.0%
!! AAACACAAATAAACTATTGT+TGG - chr4_3:72508660-72508679 Msa0661300:intron 20.0%
!! TGGCACTTTAATAATATATA+TGG + chr4_3:72508978-72508997 None:intergenic 20.0%
!! AATAACTTCGGAAAATATTA+TGG - chr4_3:72509412-72509431 Msa0661300:intron 20.0%
!!! TGCTTAATTTTCTTGAAATT+TGG - chr4_3:72509520-72509539 Msa0661300:intron 20.0%
!! TTAATTGAATATAAACGTGT+CGG - chr4_3:72509720-72509739 Msa0661300:intron 20.0%
!! AAATATATGCAACATTAAAC+GGG + chr4_3:72509901-72509920 None:intergenic 20.0%
!! TAGCAAAAAGATTATCATAT+TGG + chr4_3:72510039-72510058 None:intergenic 20.0%
!! AAAATACCACAATAAAACAT+TGG + chr4_3:72510494-72510513 None:intergenic 20.0%
!!! ATTTTTCTTAATGATCATGT+AGG - chr4_3:72510509-72510528 Msa0661300:intron 20.0%
!!! TTTTTCTTAATGATCATGTA+GGG - chr4_3:72510541-72510560 Msa0661300:intron 20.0%
!!! AAAGCATTATTACAAAAAGT+AGG + chr4_3:72510582-72510601 None:intergenic 20.0%
!!! TTTTTGTAATAATGCTTTTG+TGG - chr4_3:72510584-72510603 Msa0661300:intron 20.0%
!!! ATTCTAAGGTATAAAATAGT+AGG + chr4_3:72510680-72510699 None:intergenic 20.0%
!! GCTTAGTATGAAAAATTTAA+GGG + chr4_3:72510968-72510987 None:intergenic 20.0%
!! TGCTTAGTATGAAAAATTTA+AGG + chr4_3:72510969-72510988 None:intergenic 20.0%
!! TAGTTATTATTGTCACTATT+TGG - chr4_3:72510989-72511008 Msa0661300:intron 20.0%
!! AAAATATCACCAAGTTAAAA+TGG - chr4_3:72511127-72511146 Msa0661300:intron 20.0%
!! AAATATCACCAAGTTAAAAT+GGG - chr4_3:72511128-72511147 Msa0661300:intron 20.0%
!! GTAAATATGCTTATTAAGTA+CGG + chr4_3:72511223-72511242 None:intergenic 20.0%
!! CTAATATACAGACATAATAA+AGG + chr4_3:72511245-72511264 None:intergenic 20.0%
!! AATAAACATTATATAGTTGG+AGG - chr4_3:72511277-72511296 Msa0661300:intron 20.0%
!! AAATTAACATAAATCACATG+CGG + chr4_3:72511303-72511322 None:intergenic 20.0%
!! ATTTCTGCATATACATTATT+TGG + chr4_3:72511381-72511400 None:intergenic 20.0%
!! AAATAATGTATATGCAGAAA+TGG - chr4_3:72511380-72511399 Msa0661300:exon 20.0%
!!! AATATGAATCTGTTTTGTTT+GGG - chr4_3:72511501-72511520 Msa0661300:intron 20.0%
!! AAGCAATTACTTAAAATAGA+CGG + chr4_3:72511631-72511650 None:intergenic 20.0%
! ATTATTCATAAAGCTTGTCA+AGG + chr4_3:72508384-72508403 None:intergenic 25.0%
! TCAAAAATAAGTCAATCCAA+AGG - chr4_3:72508445-72508464 Msa0661300:intron 25.0%
!!! GTTGTGTTGATTATTTTTCA+TGG - chr4_3:72508594-72508613 Msa0661300:intron 25.0%
! ATTTATTGAAATCACAGACA+TGG + chr4_3:72508630-72508649 None:intergenic 25.0%
!!! AATAAACTATTGTTGGTTTC+TGG - chr4_3:72508667-72508686 Msa0661300:intron 25.0%
!!! CTGTGTTGATTATTTTTCAT+GGG - chr4_3:72508741-72508760 Msa0661300:intron 25.0%
! TAATGTCATAGTAATATGCA+TGG + chr4_3:72508998-72509017 None:intergenic 25.0%
! GAACTCTTCATATTGAAATA+AGG - chr4_3:72509591-72509610 Msa0661300:intron 25.0%
! TATGTAAGTATTTATCTCAG+AGG - chr4_3:72509780-72509799 Msa0661300:intron 25.0%
! GGTATTAAACAGGTAAATAT+TGG + chr4_3:72509996-72510015 None:intergenic 25.0%
!! AAGATTATCATATTGGTGTT+AGG + chr4_3:72510032-72510051 None:intergenic 25.0%
! AGTATGAAAAATTTAAGGGT+GGG + chr4_3:72510964-72510983 None:intergenic 25.0%
! TAGTATGAAAAATTTAAGGG+TGG + chr4_3:72510965-72510984 None:intergenic 25.0%
! TCGTAAAATAAAATGTTCCT+TGG + chr4_3:72511029-72511048 None:intergenic 25.0%
!!! TTAAAATGGGTAATTTGCTT+TGG - chr4_3:72511141-72511160 Msa0661300:intron 25.0%
!!! TAAAATGGGTAATTTGCTTT+GGG - chr4_3:72511142-72511161 Msa0661300:intron 25.0%
! AGTATGTTCATAAGAAACTT+GGG + chr4_3:72511198-72511217 None:intergenic 25.0%
! AAGTATGTTCATAAGAAACT+TGG + chr4_3:72511199-72511218 None:intergenic 25.0%
! TTCAAAATTAACTTCTGCTT+CGG + chr4_3:72511421-72511440 None:intergenic 25.0%
!!! GAATATGAATCTGTTTTGTT+TGG - chr4_3:72511500-72511519 Msa0661300:intron 25.0%
TGAATAGGGTGAAAAATTGA+AGG + chr4_3:72507748-72507767 None:intergenic 30.0%
AAAAATAAGCCAATCCAAAC+AGG + chr4_3:72508260-72508279 None:intergenic 30.0%
!! GTTGGCATCTTTAAGATTAA+GGG + chr4_3:72508473-72508492 None:intergenic 30.0%
!! AGTTGGCATCTTTAAGATTA+AGG + chr4_3:72508474-72508493 None:intergenic 30.0%
!!! GCTGTGTTGATTATTTTTCA+TGG - chr4_3:72508740-72508759 Msa0661300:intron 30.0%
TTGGAATCTTCAATTTCTCA+TGG - chr4_3:72508812-72508831 Msa0661300:intron 30.0%
GACTTAAATATGAAGAGTTG+AGG + chr4_3:72509086-72509105 None:intergenic 30.0%
ACAATTAACAATGTGAACTG+AGG - chr4_3:72509214-72509233 Msa0661300:intron 30.0%
! GATTGGTGGTTAAATAACTT+CGG - chr4_3:72509400-72509419 Msa0661300:intron 30.0%
ATGAATCAAACAACATCACA+AGG + chr4_3:72509567-72509586 None:intergenic 30.0%
!!! TCATTTTTTCAAAGTATCGC+CGG + chr4_3:72509699-72509718 None:intergenic 30.0%
TTCTCATAAATCTAGTCACA+TGG - chr4_3:72510124-72510143 Msa0661300:intron 30.0%
TCATTTGTATTCTGTGTAAC+AGG - chr4_3:72510188-72510207 Msa0661300:intron 30.0%
CAAGGCTCAAATGAAAATAA+AGG + chr4_3:72510454-72510473 None:intergenic 30.0%
!!! CTTTATTTTCATTTGAGCCT+TGG - chr4_3:72510452-72510471 Msa0661300:intron 30.0%
CAGAGATAAGCATAATTCTA+AGG + chr4_3:72510694-72510713 None:intergenic 30.0%
! TATCCATGTCATTTCTCTTA+TGG - chr4_3:72510723-72510742 Msa0661300:intron 30.0%
TCATTTCTCTTATGGTTGTT+AGG - chr4_3:72510731-72510750 Msa0661300:intron 30.0%
ATAACTAACCCATTAGCATA+TGG + chr4_3:72510940-72510959 None:intergenic 30.0%
!!! GCAAATTACCCATTTTAACT+TGG + chr4_3:72511139-72511158 None:intergenic 30.0%
GTATGTTCATAAGAAACTTG+GGG + chr4_3:72511197-72511216 None:intergenic 30.0%
TATATGCAGAAATGGCATTA+GGG - chr4_3:72511388-72511407 Msa0661300:exon 30.0%
CAAGTATTAAGCAAAGATAC+AGG + chr4_3:72511590-72511609 None:intergenic 30.0%
ACGAAGTTTGGGAATGAATA+GGG + chr4_3:72507762-72507781 None:intergenic 35.0%
AACGAAGTTTGGGAATGAAT+AGG + chr4_3:72507763-72507782 None:intergenic 35.0%
TTCCCACTCTTAAGATTTCT+AGG - chr4_3:72507782-72507801 Msa0661300:three_prime_UTR 35.0%
TCCCACTCTTAAGATTTCTA+GGG - chr4_3:72507783-72507802 Msa0661300:three_prime_UTR 35.0%
! TCCATACTGTTGTGATTTGT+AGG - chr4_3:72507848-72507867 Msa0661300:exon 35.0%
ACCTACAAATCACAACAGTA+TGG + chr4_3:72507852-72507871 None:intergenic 35.0%
AAACACGAAATTCATCCTCA+AGG + chr4_3:72507946-72507965 None:intergenic 35.0%
! GAGGATGAATTTCGTGTTTT+TGG - chr4_3:72507947-72507966 Msa0661300:intron 35.0%
!!! GTGTTTTTGGTGTAATTCGA+AGG - chr4_3:72507960-72507979 Msa0661300:intron 35.0%
AAAACATCCACACCATCAAA+AGG + chr4_3:72508225-72508244 None:intergenic 35.0%
! TTTGTTTCTTAGTGCCTGTT+TGG - chr4_3:72508243-72508262 Msa0661300:intron 35.0%
!! TCTGAGAGTTTTATGAGAAG+CGG - chr4_3:72508533-72508552 Msa0661300:intron 35.0%
ATGTTGTGTTTGCAGTGTTT+GGG - chr4_3:72508835-72508854 Msa0661300:intron 35.0%
! AAGTCAATAAAAGCATAGCC+AGG + chr4_3:72508875-72508894 None:intergenic 35.0%
!!! TTGTTTTTTCACCCCTTTTC+CGG - chr4_3:72509040-72509059 Msa0661300:CDS 35.0%
TGTCTCTACATGAAGTCAAA+GGG + chr4_3:72509197-72509216 None:intergenic 35.0%
TTGTCTCTACATGAAGTCAA+AGG + chr4_3:72509198-72509217 None:intergenic 35.0%
! TGCTCTGATAAGTTTTCGAT+TGG - chr4_3:72509383-72509402 Msa0661300:intron 35.0%
! TCTGATAAGTTTTCGATTGG+TGG - chr4_3:72509386-72509405 Msa0661300:intron 35.0%
AACATCACAAGGCTATATCA+AGG + chr4_3:72509556-72509575 None:intergenic 35.0%
!! TACTTACATACTCTGAAGCA+CGG + chr4_3:72509770-72509789 None:intergenic 35.0%
AAACGGGTAACAAAAAAGCT+TGG + chr4_3:72509885-72509904 None:intergenic 35.0%
ACATACTGTCTTCAAACTGA+AGG + chr4_3:72509947-72509966 None:intergenic 35.0%
TTTGAAGACAGTATGTTTGC+AGG - chr4_3:72509951-72509970 Msa0661300:intron 35.0%
TTGAAGACAGTATGTTTGCA+GGG - chr4_3:72509952-72509971 Msa0661300:intron 35.0%
!! TGCTAGATGTTCCTTTTTCA+AGG - chr4_3:72510054-72510073 Msa0661300:intron 35.0%
GAAAACGTCAGTATCAAACA+CGG - chr4_3:72510089-72510108 Msa0661300:intron 35.0%
! CTTTCTCACAATTCTAGAAG+TGG - chr4_3:72510233-72510252 Msa0661300:intron 35.0%
! GATTTGAAGTGTTATGAGTG+TGG - chr4_3:72510305-72510324 Msa0661300:intron 35.0%
!! TTGGCACCAATGTTTTATTG+TGG - chr4_3:72510485-72510504 Msa0661300:intron 35.0%
CAACCATAAGAGAAATGACA+TGG + chr4_3:72510729-72510748 None:intergenic 35.0%
TTCTCTTATGGTTGTTAGGT+TGG - chr4_3:72510735-72510754 Msa0661300:intron 35.0%
AAATGTTCCTTGGAAAACCA+GGG + chr4_3:72511019-72511038 None:intergenic 35.0%
AAAATGTTCCTTGGAAAACC+AGG + chr4_3:72511020-72511039 None:intergenic 35.0%
GTATATGCAGAAATGGCATT+AGG - chr4_3:72511387-72511406 Msa0661300:exon 35.0%
TCAGTGAGAGCAATTATTGA+GGG - chr4_3:72511444-72511463 Msa0661300:intron 35.0%
! TTGAGGGAATAGTGAGATTT+TGG - chr4_3:72511460-72511479 Msa0661300:intron 35.0%
!! GTGAGATTTTGGTCATTTAG+TGG - chr4_3:72511471-72511490 Msa0661300:intron 35.0%
CCAATACAACAGTAAAACTC+AGG + chr4_3:72511533-72511552 None:intergenic 35.0%
! CCTGAGTTTTACTGTTGTAT+TGG - chr4_3:72511530-72511549 Msa0661300:intron 35.0%
GGTGAAAAATTGAAGGTCGA+AGG + chr4_3:72507741-72507760 None:intergenic 40.0%
AAGAGTGGGAAACGAAGTTT+GGG + chr4_3:72507773-72507792 None:intergenic 40.0%
TAAGAGTGGGAAACGAAGTT+TGG + chr4_3:72507774-72507793 None:intergenic 40.0%
GCCCTAGAAATCTTAAGAGT+GGG + chr4_3:72507787-72507806 None:intergenic 40.0%
AGCCCTAGAAATCTTAAGAG+TGG + chr4_3:72507788-72507807 None:intergenic 40.0%
TTCTTAGTGCCTGTTTGGAT+TGG - chr4_3:72508248-72508267 Msa0661300:intron 40.0%
!! TTTAAGATTAAGGGCGCCTT+TGG + chr4_3:72508464-72508483 None:intergenic 40.0%
!! CTGAGAGTTTTATGAGAAGC+GGG - chr4_3:72508534-72508553 Msa0661300:intron 40.0%
GATGTTGTGTTTGCAGTGTT+TGG - chr4_3:72508834-72508853 Msa0661300:intron 40.0%
! TCAATAAAAGCATAGCCAGG+TGG + chr4_3:72508872-72508891 None:intergenic 40.0%
TGAACATATCGACCGGAAAA+GGG + chr4_3:72509055-72509074 None:intergenic 40.0%
! TTTTCCGGTCGATATGTTCA+CGG - chr4_3:72509055-72509074 Msa0661300:CDS 40.0%
GCTACACTTCTCTTGCATAA+CGG - chr4_3:72509268-72509287 Msa0661300:intron 40.0%
TGCTACTGCAATTAACCTGT+CGG - chr4_3:72509310-72509329 Msa0661300:intron 40.0%
GGGACATATATACAGAACAC+AGG + chr4_3:72509350-72509369 None:intergenic 40.0%
TGATATGGATATGTCGACAC+CGG - chr4_3:72509677-72509696 Msa0661300:intron 40.0%
! GAATATAAACGTGTCGGTGT+CGG - chr4_3:72509726-72509745 Msa0661300:intron 40.0%
! AATATAAACGTGTCGGTGTC+GGG - chr4_3:72509727-72509746 Msa0661300:intron 40.0%
TGTCTTCAAACTGAAGGTCT+CGG + chr4_3:72509941-72509960 None:intergenic 40.0%
ACAGTATGTTTGCAGGGTTA+TGG - chr4_3:72509958-72509977 Msa0661300:intron 40.0%
GACACAGCTAGGTATTAAAC+AGG + chr4_3:72510006-72510025 None:intergenic 40.0%
TTCTGTGTAACAGGCAAGAA+TGG - chr4_3:72510197-72510216 Msa0661300:intron 40.0%
! TCTCACAATTCTAGAAGTGG+TGG - chr4_3:72510236-72510255 Msa0661300:intron 40.0%
! GTCTTTCTTTTGTATGCACC+AGG - chr4_3:72510812-72510831 Msa0661300:intron 40.0%
! TATCTTCTGCCGCTATCTTT+TGG - chr4_3:72511165-72511184 Msa0661300:intron 40.0%
TCATAAGAAACTTGGGGTCT+TGG + chr4_3:72511191-72511210 None:intergenic 40.0%
GTCAGTGAGAGCAATTATTG+AGG - chr4_3:72511443-72511462 Msa0661300:intron 40.0%
CTGAGAAAAACCCTAGCTAG+CGG + chr4_3:72507696-72507715 None:intergenic 45.0%
!! TGGATTCTAGAGTCTCAGAG+AGG - chr4_3:72507918-72507937 Msa0661300:intron 45.0%
!! GGATTCTAGAGTCTCAGAGA+GGG - chr4_3:72507919-72507938 Msa0661300:intron 45.0%
GATGCTATACGCGATCTAGA+TGG - chr4_3:72508917-72508936 Msa0661300:CDS 45.0%
GAACATATCGACCGGAAAAG+GGG + chr4_3:72509054-72509073 None:intergenic 45.0%
GTGAACATATCGACCGGAAA+AGG + chr4_3:72509056-72509075 None:intergenic 45.0%
AAAGCCGTGAACATATCGAC+CGG + chr4_3:72509062-72509081 None:intergenic 45.0%
ACTGAGGATTTGCACTGCTT+TGG - chr4_3:72509230-72509249 Msa0661300:intron 45.0%
CTGAGGATTTGCACTGCTTT+GGG - chr4_3:72509231-72509250 Msa0661300:intron 45.0%
TGAGGATTTGCACTGCTTTG+GGG - chr4_3:72509232-72509251 Msa0661300:intron 45.0%
! CAGAGCACAATTTGCTCAGA+GGG + chr4_3:72509370-72509389 None:intergenic 45.0%
! TCAGAGCACAATTTGCTCAG+AGG + chr4_3:72509371-72509390 None:intergenic 45.0%
CACTGGACACAACACTGATA+TGG - chr4_3:72509662-72509681 Msa0661300:intron 45.0%
GTGTTAGGTTTGACACAGCT+AGG + chr4_3:72510017-72510036 None:intergenic 45.0%
GTGTAACAGGCAAGAATGGT+TGG - chr4_3:72510201-72510220 Msa0661300:intron 45.0%
TAACAGGCAAGAATGGTTGG+AGG - chr4_3:72510204-72510223 Msa0661300:intron 45.0%
AACAGGCAAGAATGGTTGGA+GGG - chr4_3:72510205-72510224 Msa0661300:intron 45.0%
! CACAATTCTAGAAGTGGTGG+TGG - chr4_3:72510239-72510258 Msa0661300:intron 45.0%
!! AATTCTAGAAGTGGTGGTGG+CGG - chr4_3:72510242-72510261 Msa0661300:intron 45.0%
TGTTATGAGTGTGGTGAACC+TGG - chr4_3:72510314-72510333 Msa0661300:intron 45.0%
TGCGACATTCACGAGCAAAA+TGG + chr4_3:72510340-72510359 None:intergenic 45.0%
TTTCGCAGGAGTCCAAGTTA+TGG - chr4_3:72510410-72510429 Msa0661300:CDS 45.0%
TTCGCAGGAGTCCAAGTTAT+GGG - chr4_3:72510411-72510430 Msa0661300:CDS 45.0%
TCTAACCTTCGCCCATAACT+TGG + chr4_3:72510425-72510444 None:intergenic 45.0%
GTTATGGGCGAAGGTTAGAT+TGG - chr4_3:72510426-72510445 Msa0661300:intron 45.0%
! GAGCCTTGGTGCAATTGTAT+TGG - chr4_3:72510466-72510485 Msa0661300:intron 45.0%
GTGCCAATACAATTGCACCA+AGG + chr4_3:72510472-72510491 None:intergenic 45.0%
!! AGGAGGTGCCATATGCTAAT+GGG - chr4_3:72510929-72510948 Msa0661300:intron 45.0%
ATTAACTTCTGCTTCGGCGT+CGG + chr4_3:72511415-72511434 None:intergenic 45.0%
! CGCTAGCTAGGGTTTTTCTC+AGG - chr4_3:72507694-72507713 Msa0661300:three_prime_UTR 50.0%
AACGATGTCTCGTGTGTACG+TGG - chr4_3:72507889-72507908 Msa0661300:intron 50.0%
ACGATGTCTCGTGTGTACGT+GGG - chr4_3:72507890-72507909 Msa0661300:intron 50.0%
TCGTGTGTACGTGGGTAATC+TGG - chr4_3:72507898-72507917 Msa0661300:intron 50.0%
! TAGGGTCTGCTGCCTTTTGA+TGG - chr4_3:72508210-72508229 Msa0661300:intron 50.0%
!!! TCTGCTGCCTTTTGATGGTG+TGG - chr4_3:72508215-72508234 Msa0661300:intron 50.0%
!! ATGAGAAGCGGGTTAGTGAG+TGG - chr4_3:72508545-72508564 Msa0661300:intron 50.0%
!! TGAGAAGCGGGTTAGTGAGT+GGG - chr4_3:72508546-72508565 Msa0661300:intron 50.0%
TAGCATCCTGTGCATCTCTG+CGG + chr4_3:72508904-72508923 None:intergenic 50.0%
GTGTAAGCTGTTCGCAGACA+TGG - chr4_3:72509638-72509657 Msa0661300:intron 50.0%
CATTCACGAGCAAAATGGCC+AGG + chr4_3:72510335-72510354 None:intergenic 50.0%
!! GAGGAGGTGCCATATGCTAA+TGG - chr4_3:72510928-72510947 Msa0661300:intron 50.0%
TGTCACTATTTGGACAGCCC+TGG - chr4_3:72510999-72511018 Msa0661300:intron 50.0%
GGGTCTTGGCCAAAAGATAG+CGG + chr4_3:72511177-72511196 None:intergenic 50.0%
AGTCTCAGAGAGGGACCTTG+AGG - chr4_3:72507928-72507947 Msa0661300:intron 55.0%
TGATGACCGCAGAGATGCAC+AGG - chr4_3:72508895-72508914 Msa0661300:CDS 55.0%
TGCAAGCAGCTCTGCAGTAG+TGG - chr4_3:72509133-72509152 Msa0661300:intron 55.0%
GAACACAGGCAGCACTCACA+TGG + chr4_3:72509336-72509355 None:intergenic 55.0%
CTGTTCGCAGACATGGACAC+TGG - chr4_3:72509645-72509664 Msa0661300:intron 55.0%
! GCACGGACACCTCTAGGAAT+AGG + chr4_3:72509753-72509772 None:intergenic 55.0%
! TCTGAAGCACGGACACCTCT+AGG + chr4_3:72509759-72509778 None:intergenic 55.0%
GCTCGTGAATGTCGCAATCG+TGG - chr4_3:72510344-72510363 Msa0661300:intron 55.0%
CGTGAATGTCGCAATCGTGG+TGG - chr4_3:72510347-72510366 Msa0661300:intron 55.0%
GAATGTCGCAATCGTGGTGG+TGG - chr4_3:72510350-72510369 Msa0661300:intron 55.0%
!! TGCGAAATCGAGGTGGACTG+CGG + chr4_3:72510397-72510416 None:intergenic 55.0%
CTTGGACTCCTGCGAAATCG+AGG + chr4_3:72510407-72510426 None:intergenic 55.0%
GGAGTCCAAGTTATGGGCGA+AGG - chr4_3:72510417-72510436 Msa0661300:CDS 55.0%
ACCAGGAGTTACAGTCCTCG+TGG - chr4_3:72510829-72510848 Msa0661300:intron 55.0%
CCAGGAGTTACAGTCCTCGT+GGG - chr4_3:72510830-72510849 Msa0661300:intron 55.0%
!! TGGACAGCCCTGGTTTTCCA+AGG - chr4_3:72511009-72511028 Msa0661300:intron 55.0%
TCGTGTTCTCGCCGCTAGCT+AGG - chr4_3:72507682-72507701 Msa0661300:three_prime_UTR 60.0%
CGTGTTCTCGCCGCTAGCTA+GGG - chr4_3:72507683-72507702 Msa0661300:three_prime_UTR 60.0%
TGGGTTGCTCGAAGACCACC+TGG - chr4_3:72508854-72508873 Msa0661300:CDS 60.0%
! GGTGTCGGGCCTATTCCTAG+AGG - chr4_3:72509741-72509760 Msa0661300:intron 60.0%
!! TCTAGAAGTGGTGGTGGCGG+CGG - chr4_3:72510245-72510264 Msa0661300:intron 60.0%
!! TGTCGCAATCGTGGTGGTGG+TGG - chr4_3:72510353-72510372 Msa0661300:CDS 60.0%
!! AATCGTGGTGGTGGTGGTGC+AGG - chr4_3:72510359-72510378 Msa0661300:CDS 60.0%
!! ATCGAGGTGGACTGCGGCTA+CGG + chr4_3:72510391-72510410 None:intergenic 60.0%
GCAGTCCACCTCGATTTCGC+AGG - chr4_3:72510396-72510415 Msa0661300:CDS 60.0%
GGACTCCTGCGAAATCGAGG+TGG + chr4_3:72510404-72510423 None:intergenic 60.0%
CCCACGAGGACTGTAACTCC+TGG + chr4_3:72510833-72510852 None:intergenic 60.0%
GGAGTTACAGTCCTCGTGGG+CGG - chr4_3:72510833-72510852 Msa0661300:intron 60.0%
CTGCTGTAGCTACGTCCACG+AGG + chr4_3:72510883-72510902 None:intergenic 60.0%
CTCGTGGACGTAGCTACAGC+AGG - chr4_3:72510881-72510900 Msa0661300:intron 60.0%
AGGTCACCACCTCCTTACCG+TGG - chr4_3:72510901-72510920 Msa0661300:intron 60.0%
GGTCACCACCTCCTTACCGT+GGG - chr4_3:72510902-72510921 Msa0661300:intron 60.0%
GCAGCACTCACATGGCCGAC+AGG + chr4_3:72509328-72509347 None:intergenic 65.0%
GTCCACGAGGTGACACGCTG+CGG + chr4_3:72510870-72510889 None:intergenic 65.0%
TCACGCCCACGGTAAGGAGG+TGG + chr4_3:72510910-72510929 None:intergenic 65.0%
ACCTCCTTACCGTGGGCGTG+AGG - chr4_3:72510909-72510928 Msa0661300:intron 65.0%
TCCTCACGCCCACGGTAAGG+AGG + chr4_3:72510913-72510932 None:intergenic 65.0%
TCCTTACCGTGGGCGTGAGG+AGG - chr4_3:72510912-72510931 Msa0661300:intron 65.0%
ACCTCCTCACGCCCACGGTA+AGG + chr4_3:72510916-72510935 None:intergenic 65.0%
ATGGCACCTCCTCACGCCCA+CGG + chr4_3:72510921-72510940 None:intergenic 65.0%
!! AGAAGTGGTGGTGGCGGCGG+CGG - chr4_3:72510248-72510267 Msa0661300:intron 70.0%
!! GGTGGTGGAGGTCGTGGTCG+TGG - chr4_3:72510269-72510288 Msa0661300:intron 70.0%
GGTGGAGGTCGTGGTCGTGG+CGG - chr4_3:72510272-72510291 Msa0661300:intron 70.0%
GGAGGTCGTGGTCGTGGCGG+CGG - chr4_3:72510275-72510294 Msa0661300:intron 75.0%
TGACACGCTGCGGCGCCTGG+GGG + chr4_3:72510860-72510879 None:intergenic 75.0%
GTGACACGCTGCGGCGCCTG+GGG + chr4_3:72510861-72510880 None:intergenic 75.0%
GGTGACACGCTGCGGCGCCT+GGG + chr4_3:72510862-72510881 None:intergenic 75.0%
AGGTGACACGCTGCGGCGCC+TGG + chr4_3:72510863-72510882 None:intergenic 75.0%
CGCCGCAGCGTGTCACCTCG+TGG - chr4_3:72510865-72510884 Msa0661300:intron 75.0%
!!! AGTGGTGGTGGCGGCGGCGG+TGG - chr4_3:72510251-72510270 Msa0661300:intron 80.0%
!!! GGCGGCGGTGGTGGAGGTCG+TGG - chr4_3:72510263-72510282 Msa0661300:intron 80.0%
! GGTCGTGGTCGTGGCGGCGG+CGG - chr4_3:72510278-72510297 Msa0661300:intron 80.0%
! GTCCTCGTGGGCGGTCCCCC+AGG - chr4_3:72510842-72510861 Msa0661300:intron 80.0%
!!! GGTGGTGGCGGCGGCGGTGG+TGG - chr4_3:72510254-72510273 Msa0661300:intron 85.0%
!! GGTGGCGGCGGCGGTGGTGG+AGG - chr4_3:72510257-72510276 Msa0661300:intron 85.0%
! CGCCTGGGGGACCGCCCACG+AGG + chr4_3:72510847-72510866 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 72507632 72511658 72507632 ID=Msa0661300;Name=Msa0661300
chr4_3 mRNA 72507632 72511658 72507632 ID=Msa0661300-mRNA-1;Parent=Msa0661300;Name=Msa0661300-mRNA-1;_AED=0.29;_eAED=0.29;_QI=107|1|1|1|0.6|0.66|6|225|186
chr4_3 exon 72507632 72507893 72507632 ID=Msa0661300-mRNA-1:exon:21839;Parent=Msa0661300-mRNA-1
chr4_3 exon 72508340 72508456 72508340 ID=Msa0661300-mRNA-1:exon:21838;Parent=Msa0661300-mRNA-1
chr4_3 exon 72508852 72509080 72508852 ID=Msa0661300-mRNA-1:exon:21837;Parent=Msa0661300-mRNA-1
chr4_3 exon 72510352 72510440 72510352 ID=Msa0661300-mRNA-1:exon:21836;Parent=Msa0661300-mRNA-1
chr4_3 exon 72511309 72511420 72511309 ID=Msa0661300-mRNA-1:exon:21835;Parent=Msa0661300-mRNA-1
chr4_3 exon 72511575 72511658 72511575 ID=Msa0661300-mRNA-1:exon:21834;Parent=Msa0661300-mRNA-1
chr4_3 five_prime_UTR 72511575 72511658 72511575 ID=Msa0661300-mRNA-1:five_prime_utr;Parent=Msa0661300-mRNA-1
chr4_3 five_prime_UTR 72511398 72511420 72511398 ID=Msa0661300-mRNA-1:five_prime_utr;Parent=Msa0661300-mRNA-1
chr4_3 CDS 72511309 72511397 72511309 ID=Msa0661300-mRNA-1:cds;Parent=Msa0661300-mRNA-1
chr4_3 CDS 72510352 72510440 72510352 ID=Msa0661300-mRNA-1:cds;Parent=Msa0661300-mRNA-1
chr4_3 CDS 72508852 72509080 72508852 ID=Msa0661300-mRNA-1:cds;Parent=Msa0661300-mRNA-1
chr4_3 CDS 72508340 72508456 72508340 ID=Msa0661300-mRNA-1:cds;Parent=Msa0661300-mRNA-1
chr4_3 CDS 72507857 72507893 72507857 ID=Msa0661300-mRNA-1:cds;Parent=Msa0661300-mRNA-1
chr4_3 three_prime_UTR 72507632 72507856 72507632 ID=Msa0661300-mRNA-1:three_prime_utr;Parent=Msa0661300-mRNA-1
Gene Sequence

>Msa0661300

ATGTCTCGTGTGTACGTGGGTAATCTGGATTCTAGAGTCTCAGAGAGGGACCTTGAGGATGAATTTCGTGTTTTTGGTGTAATTCGAAGTGTTTGGGTTGCTCGAAGACCACCTGGCTATGCTTTTATTGACTTTGATGACCGCAGAGATGCACAGGATGCTATACGCGATCTAGATGGCAAGAATGGTTGGAGGGTAGAGCTTTCTCACAATTCTAGAAGTGGTGGTGGCGGCGGCGGTGGTGGAGGTCGTGGTCGTGGCGGCGGCGGTTCTGATTTGAAGTGTTATGAGTGTGGTGAACCTGGCCATTTTGCTCGTGAATGTCGCAATCGTGGTGGTGGTGGTGCAGGAAGACGCCGTAGCCGCAGTCCACCTCGATTTCGCAGGAGTCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGTGGGCGGTCCCCCAGGCGCCGCAGCGTGTCACCTCGTGGACGTAGCTACAGCAGGTCACCACCTCCTTACCGTGGGCGTGAGGAGGTGCCATATGCTAATGGAAATGGCATTAGGGACCGACGCCGAAGCAGAAGTTAA

Protein sequence

>Msa0661300

MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRDLDGKNGWRVELSHNSRSGGGGGGGGGRGRGGGGSDLKCYECGEPGHFARECRNRGGGGAGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSVSPRGRSYSRSPPPYRGREEVPYANGNGIRDRRRSRS*