Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037250 | sp|Q7YR70|AAMP_CANLF | 34.043 | 188 | 99 | 5 | 8 | 170 | 244 | 431 | 1.26e-22 | 96.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0037250 | 0.826582 | 2.507153e-54 | -8.615850e-47 |
| Msa0003780 | Msa0037250 | 0.828208 | 1.021752e-54 | -8.615850e-47 |
| Msa0009430 | Msa0037250 | 0.815005 | 1.153606e-51 | -8.615850e-47 |
| Msa0027260 | Msa0037250 | 0.806686 | 7.292135e-50 | -8.615850e-47 |
| Msa0030170 | Msa0037250 | 0.829265 | 5.668761e-55 | -8.615850e-47 |
| Msa0037250 | Msa0040690 | 0.800416 | 1.455898e-48 | -8.615850e-47 |
| Msa0037250 | Msa0048180 | 0.820719 | 5.912586e-53 | -8.615850e-47 |
| Msa0037250 | Msa0056470 | 0.873952 | 9.863047e-68 | -8.615850e-47 |
| Msa0037250 | Msa0068020 | 0.800105 | 1.684376e-48 | -8.615850e-47 |
| Msa0037250 | Msa0072420 | 0.841602 | 4.302032e-58 | -8.615850e-47 |
| Msa0037250 | Msa0086750 | 0.813588 | 2.372631e-51 | -8.615850e-47 |
| Msa0037250 | Msa0090520 | 0.809295 | 2.030353e-50 | -8.615850e-47 |
| Msa0037250 | Msa0091410 | 0.800465 | 1.422737e-48 | -8.615850e-47 |
| Msa0037250 | Msa0094470 | 0.814234 | 1.709145e-51 | -8.615850e-47 |
| Msa0037250 | Msa0100740 | 0.825706 | 4.049178e-54 | -8.615850e-47 |
| Msa0037250 | Msa0125450 | 0.815404 | 9.407374e-52 | -8.615850e-47 |
| Msa0037250 | Msa0125540 | 0.819806 | 9.572871e-53 | -8.615850e-47 |
| Msa0037250 | Msa0125660 | 0.838617 | 2.585529e-57 | -8.615850e-47 |
| Msa0037250 | Msa0128860 | 0.811021 | 8.623637e-51 | -8.615850e-47 |
| Msa0037250 | Msa0137990 | 0.808047 | 3.751806e-50 | -8.615850e-47 |
| Msa0037250 | Msa0140650 | 0.827918 | 1.199547e-54 | -8.615850e-47 |
| Msa0037250 | Msa0140820 | 0.848552 | 5.700680e-60 | -8.615850e-47 |
| Msa0037250 | Msa0146340 | 0.829568 | 4.786993e-55 | -8.615850e-47 |
| Msa0037250 | Msa0149190 | 0.827666 | 1.379252e-54 | -8.615850e-47 |
| Msa0037250 | Msa0149200 | 0.820147 | 7.997596e-53 | -8.615850e-47 |
| Msa0037250 | Msa0150300 | 0.837934 | 3.876530e-57 | -8.615850e-47 |
| Msa0037250 | Msa0174730 | 0.810385 | 1.183433e-50 | -8.615850e-47 |
| Msa0037250 | Msa0177960 | 0.879306 | 1.387469e-69 | -8.615850e-47 |
| Msa0037250 | Msa0183900 | 0.807259 | 5.516776e-50 | -8.615850e-47 |
| Msa0037250 | Msa0199880 | 0.815155 | 1.068641e-51 | -8.615850e-47 |
| Msa0037250 | Msa0207670 | 0.847292 | 1.268151e-59 | -8.615850e-47 |
| Msa0037250 | Msa0207700 | 0.808303 | 3.309200e-50 | -8.615850e-47 |
| Msa0037250 | Msa0209350 | 0.887274 | 1.648428e-72 | -8.615850e-47 |
| Msa0037250 | Msa0209500 | 0.819127 | 1.367266e-52 | -8.615850e-47 |
| Msa0037250 | Msa0232050 | 0.801714 | 7.902057e-49 | -8.615850e-47 |
| Msa0037250 | Msa0232080 | 0.801142 | 1.035288e-48 | -8.615850e-47 |
| Msa0037250 | Msa0242410 | 0.809110 | 2.224972e-50 | -8.615850e-47 |
| Msa0037250 | Msa0267970 | 0.831496 | 1.615268e-55 | -8.615850e-47 |
| Msa0037250 | Msa0281530 | 0.819409 | 1.179221e-52 | -8.615850e-47 |
| Msa0037250 | Msa0310030 | 0.839873 | 1.221362e-57 | -8.615850e-47 |
| Msa0037250 | Msa0317910 | 0.842567 | 2.390328e-58 | -8.615850e-47 |
| Msa0037250 | Msa0327330 | 0.804729 | 1.878582e-49 | -8.615850e-47 |
| Msa0037250 | Msa0336010 | 0.820681 | 6.031986e-53 | -8.615850e-47 |
| Msa0037250 | Msa0348830 | 0.833520 | 5.087760e-56 | -8.615850e-47 |
| Msa0037250 | Msa0366890 | 0.842597 | 2.346681e-58 | -8.615850e-47 |
| Msa0037250 | Msa0369450 | 0.836277 | 1.028284e-56 | -8.615850e-47 |
| Msa0037250 | Msa0376300 | 0.855703 | 5.281059e-62 | -8.615850e-47 |
| Msa0037250 | Msa0376310 | 0.841138 | 5.697277e-58 | -8.615850e-47 |
| Msa0037250 | Msa0378490 | 0.833333 | 5.665937e-56 | -8.615850e-47 |
| Msa0037250 | Msa0380300 | 0.816646 | 4.968141e-52 | -8.615850e-47 |
| Msa0037250 | Msa0385500 | 0.819592 | 1.071371e-52 | -8.615850e-47 |
| Msa0037250 | Msa0390030 | 0.828328 | 9.554175e-55 | -8.615850e-47 |
| Msa0037250 | Msa0395890 | 0.801521 | 8.659482e-49 | -8.615850e-47 |
| Msa0037250 | Msa0398670 | 0.807604 | 4.660565e-50 | -8.615850e-47 |
| Msa0037250 | Msa0414800 | 0.850832 | 1.315371e-60 | -8.615850e-47 |
| Msa0037250 | Msa0423750 | 0.819301 | 1.248185e-52 | -8.615850e-47 |
| Msa0037250 | Msa0427150 | 0.865103 | 7.524681e-65 | -8.615850e-47 |
| Msa0037250 | Msa0443390 | 0.818279 | 2.129323e-52 | -8.615850e-47 |
| Msa0037250 | Msa0458060 | 0.813802 | 2.128603e-51 | -8.615850e-47 |
| Msa0037250 | Msa0471440 | 0.838019 | 3.685996e-57 | -8.615850e-47 |
| Msa0037250 | Msa0481480 | 0.800001 | 1.768836e-48 | -8.615850e-47 |
| Msa0037250 | Msa0521050 | 0.847334 | 1.235065e-59 | -8.615850e-47 |
| Msa0037250 | Msa0524500 | 0.821466 | 3.978564e-53 | -8.615850e-47 |
| Msa0037250 | Msa0539410 | 0.827382 | 1.613728e-54 | -8.615850e-47 |
| Msa0037250 | Msa0547160 | 0.803688 | 3.093038e-49 | -8.615850e-47 |
| Msa0037250 | Msa0547940 | 0.800012 | 1.759479e-48 | -8.615850e-47 |
| Msa0037250 | Msa0548240 | 0.827185 | 1.798937e-54 | -8.615850e-47 |
| Msa0037250 | Msa0556060 | 0.804981 | 1.664176e-49 | -8.615850e-47 |
| Msa0037250 | Msa0581110 | 0.851380 | 9.214611e-61 | -8.615850e-47 |
| Msa0037250 | Msa0588260 | 0.805401 | 1.358733e-49 | -8.615850e-47 |
| Msa0037250 | Msa0588360 | 0.813050 | 3.114266e-51 | -8.615850e-47 |
| Msa0037250 | Msa0595170 | 0.800698 | 1.275323e-48 | -8.615850e-47 |
| Msa0037250 | Msa0602920 | 0.803330 | 3.671160e-49 | -8.615850e-47 |
| Msa0037250 | Msa0608320 | 0.822804 | 1.946662e-53 | -8.615850e-47 |
| Msa0037250 | Msa0615990 | 0.822953 | 1.797361e-53 | -8.615850e-47 |
| Msa0037250 | Msa0623790 | 0.825251 | 5.190202e-54 | -8.615850e-47 |
| Msa0037250 | Msa0634890 | 0.828553 | 8.434899e-55 | -8.615850e-47 |
| Msa0037250 | Msa0643560 | 0.806550 | 7.791006e-50 | -8.615850e-47 |
| Msa0037250 | Msa0647500 | 0.801390 | 9.211339e-49 | -8.615850e-47 |
| Msa0037250 | Msa0651050 | 0.842194 | 3.001196e-58 | -8.615850e-47 |
| Msa0037250 | Msa0661300 | 0.870349 | 1.560369e-66 | -8.615850e-47 |
| Msa0037250 | Msa0666230 | 0.804716 | 1.889991e-49 | -8.615850e-47 |
| Msa0037250 | Msa0666270 | 0.803362 | 3.614271e-49 | -8.615850e-47 |
| Msa0037250 | Msa0669520 | 0.822706 | 2.051910e-53 | -8.615850e-47 |
| Msa0037250 | Msa0698780 | 0.868654 | 5.561419e-66 | -8.615850e-47 |
| Msa0037250 | Msa0746420 | 0.802102 | 6.580073e-49 | -8.615850e-47 |
| Msa0037250 | Msa0788850 | 0.821690 | 3.531801e-53 | -8.615850e-47 |
| Msa0037250 | Msa0808800 | 0.834263 | 3.316101e-56 | -8.615850e-47 |
| Msa0037250 | Msa0820650 | 0.817862 | 2.645425e-52 | -8.615850e-47 |
| Msa0037250 | Msa0953310 | 0.814354 | 1.608313e-51 | -8.615850e-47 |
| Msa0037250 | Msa0968590 | 0.826998 | 1.993514e-54 | -8.615850e-47 |
| Msa0037250 | Msa1019240 | 0.821522 | 3.860445e-53 | -8.615850e-47 |
| Msa0037250 | Msa1019260 | 0.829162 | 6.005403e-55 | -8.615850e-47 |
| Msa0037250 | Msa1081930 | 0.823840 | 1.115417e-53 | -8.615850e-47 |
| Msa0037250 | Msa1104140 | 0.835669 | 1.467109e-56 | -8.615850e-47 |
| Msa0037250 | Msa1104210 | 0.834185 | 3.469015e-56 | -8.615850e-47 |
| Msa0037250 | Msa1119840 | -0.813493 | 2.488891e-51 | -8.615850e-47 |
| Msa0037250 | Msa1126510 | 0.818822 | 1.604273e-52 | -8.615850e-47 |
| Msa0037250 | Msa1126830 | 0.853201 | 2.793532e-61 | -8.615850e-47 |
| Msa0037250 | Msa1130980 | 0.825051 | 5.787085e-54 | -8.615850e-47 |
| Msa0037250 | Msa1165780 | 0.819525 | 1.109611e-52 | -8.615850e-47 |
| Msa0037250 | Msa1165940 | 0.875790 | 2.334162e-68 | -8.615850e-47 |
| Msa0037250 | Msa1166860 | 0.827691 | 1.360579e-54 | -8.615850e-47 |
| Msa0037250 | Msa1175350 | 0.808230 | 3.429992e-50 | -8.615850e-47 |
| Msa0037250 | Msa1179950 | 0.803751 | 3.001869e-49 | -8.615850e-47 |
| Msa0037250 | Msa1208020 | 0.808198 | 3.484032e-50 | -8.615850e-47 |
| Msa0037250 | Msa1244600 | 0.833152 | 6.284878e-56 | -8.615850e-47 |
| Msa0037250 | Msa1269790 | 0.832946 | 7.072559e-56 | -8.615850e-47 |
| Msa0037250 | Msa1294120 | 0.811539 | 6.656220e-51 | -8.615850e-47 |
| Msa0037250 | Msa1296830 | 0.812998 | 3.196523e-51 | -8.615850e-47 |
| Msa0037250 | Msa1315890 | 0.816976 | 4.189503e-52 | -8.615850e-47 |
| Msa0037250 | Msa1338190 | 0.802467 | 5.534021e-49 | -8.615850e-47 |
| Msa0037250 | Msa1341060 | 0.835996 | 1.211909e-56 | -8.615850e-47 |
| Msa0037250 | Msa1365800 | 0.822919 | 1.830820e-53 | -8.615850e-47 |
| Msa0037250 | Msa1367590 | 0.806736 | 7.115643e-50 | -8.615850e-47 |
| Msa0037250 | Msa1368120 | 0.848433 | 6.147988e-60 | -8.615850e-47 |
| Msa0037250 | Msa1368530 | 0.825163 | 5.444282e-54 | -8.615850e-47 |
| Msa0037250 | Msa1374120 | 0.802916 | 4.469505e-49 | -8.615850e-47 |
| Msa0037250 | Msa1379760 | 0.808404 | 3.149460e-50 | -8.615850e-47 |
| Msa0037250 | Msa1389320 | 0.832593 | 8.652565e-56 | -8.615850e-47 |
| Msa0037250 | Msa1389510 | 0.823493 | 1.344390e-53 | -8.615850e-47 |
| Msa0037250 | Msa1391410 | 0.840336 | 9.245131e-58 | -8.615850e-47 |
| Msa0037250 | Msa1399530 | 0.800093 | 1.694337e-48 | -8.615850e-47 |
| Msa0037250 | Msa1407460 | 0.815671 | 8.201829e-52 | -8.615850e-47 |
| Msa0037250 | Msa1413260 | 0.822109 | 2.823713e-53 | -8.615850e-47 |
| Msa0037250 | Msa1418340 | 0.823550 | 1.303972e-53 | -8.615850e-47 |
| Msa0037250 | Msa1425670 | 0.811629 | 6.361774e-51 | -8.615850e-47 |
| Msa0037250 | Msa1428880 | 0.817104 | 3.921300e-52 | -8.615850e-47 |
| Msa0037250 | Msa1437860 | 0.804637 | 1.963457e-49 | -8.615850e-47 |
| Msa0037250 | Msa1451560 | 0.846207 | 2.511108e-59 | -8.615850e-47 |
| Msa0037250 | Msa1456050 | 0.822661 | 2.102364e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037250 | MtrunA17_Chr1g0200901 | 95.266 | 169 | 8 | 0 | 5 | 173 | 239 | 407 | 8.15e-112 | 324 |
| Msa0037250 | MtrunA17_Chr7g0271371 | 83.654 | 104 | 17 | 0 | 70 | 173 | 18 | 121 | 1.31e-60 | 184 |
| Msa0037250 | MtrunA17_Chr1g0185501 | 33.058 | 121 | 78 | 2 | 53 | 170 | 21 | 141 | 2.83e-17 | 77.4 |
| Msa0037250 | MtrunA17_Chr2g0281451 | 28.125 | 160 | 107 | 6 | 16 | 169 | 14 | 171 | 3.00e-16 | 75.5 |
| Msa0037250 | MtrunA17_Chr2g0281451 | 26.543 | 162 | 108 | 4 | 16 | 170 | 57 | 214 | 2.05e-12 | 64.3 |
| Msa0037250 | MtrunA17_Chr3g0136971 | 32.857 | 140 | 91 | 3 | 33 | 169 | 435 | 574 | 1.12e-15 | 73.9 |
| Msa0037250 | MtrunA17_Chr6g0448921 | 25.926 | 162 | 109 | 4 | 16 | 170 | 58 | 215 | 1.15e-14 | 70.9 |
| Msa0037250 | MtrunA17_Chr6g0448921 | 27.044 | 159 | 110 | 5 | 16 | 169 | 15 | 172 | 6.51e-14 | 68.6 |
| Msa0037250 | MtrunA17_Chr1g0176241 | 25.786 | 159 | 110 | 3 | 16 | 167 | 160 | 317 | 3.89e-13 | 66.2 |
| Msa0037250 | MtrunA17_Chr2g0295791 | 25.625 | 160 | 114 | 4 | 16 | 171 | 211 | 369 | 7.48e-12 | 62.8 |
| Msa0037250 | MtrunA17_Chr5g0401661 | 25.281 | 178 | 118 | 6 | 5 | 169 | 467 | 642 | 1.24e-11 | 62.0 |
| Msa0037250 | MtrunA17_Chr7g0253861 | 27.451 | 153 | 100 | 3 | 20 | 161 | 185 | 337 | 2.72e-11 | 60.8 |
| Msa0037250 | MtrunA17_Chr7g0253861 | 24.684 | 158 | 116 | 2 | 16 | 170 | 97 | 254 | 3.02e-11 | 60.8 |
| Msa0037250 | MtrunA17_Chr5g0401671 | 25.676 | 148 | 98 | 3 | 34 | 169 | 405 | 552 | 3.82e-11 | 60.8 |
| Msa0037250 | MtrunA17_Chr4g0053651 | 25.281 | 178 | 120 | 4 | 5 | 170 | 360 | 536 | 8.88e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037250 | AT1G71840.1 | 57.988 | 169 | 66 | 3 | 5 | 168 | 230 | 398 | 3.04e-61 | 195 |
| Msa0037250 | AT1G71840.1 | 23.214 | 168 | 123 | 4 | 8 | 169 | 104 | 271 | 9.68e-11 | 59.7 |
| Msa0037250 | AT5G67320.1 | 27.933 | 179 | 114 | 6 | 5 | 170 | 395 | 571 | 4.72e-15 | 72.4 |
| Msa0037250 | AT5G08390.1 | 25.926 | 162 | 109 | 4 | 16 | 170 | 58 | 215 | 1.32e-14 | 71.2 |
| Msa0037250 | AT5G08390.1 | 27.215 | 158 | 111 | 4 | 16 | 169 | 15 | 172 | 3.26e-13 | 67.0 |
| Msa0037250 | AT1G73720.1 | 31.707 | 123 | 73 | 3 | 59 | 170 | 213 | 335 | 1.74e-14 | 70.9 |
| Msa0037250 | AT5G23430.3 | 25.926 | 162 | 109 | 4 | 16 | 170 | 58 | 215 | 1.97e-14 | 70.5 |
| Msa0037250 | AT5G23430.3 | 26.582 | 158 | 112 | 4 | 16 | 169 | 15 | 172 | 9.82e-13 | 65.9 |
| Msa0037250 | AT5G23430.2 | 25.926 | 162 | 109 | 4 | 16 | 170 | 58 | 215 | 1.97e-14 | 70.5 |
| Msa0037250 | AT5G23430.2 | 26.582 | 158 | 112 | 4 | 16 | 169 | 15 | 172 | 9.82e-13 | 65.9 |
| Msa0037250 | AT4G02730.1 | 33.333 | 129 | 81 | 5 | 50 | 173 | 34 | 162 | 2.06e-14 | 70.1 |
| Msa0037250 | AT4G02730.1 | 25.153 | 163 | 117 | 4 | 16 | 173 | 42 | 204 | 4.24e-11 | 60.5 |
| Msa0037250 | AT5G23430.1 | 25.926 | 162 | 109 | 4 | 16 | 170 | 58 | 215 | 2.10e-14 | 70.5 |
| Msa0037250 | AT5G23430.1 | 26.582 | 158 | 112 | 4 | 16 | 169 | 15 | 172 | 1.01e-12 | 65.9 |
| Msa0037250 | AT1G11160.2 | 28.750 | 160 | 106 | 6 | 16 | 169 | 14 | 171 | 2.72e-14 | 70.5 |
| Msa0037250 | AT1G11160.4 | 28.750 | 160 | 106 | 6 | 16 | 169 | 14 | 171 | 2.82e-14 | 70.1 |
| Msa0037250 | AT1G11160.1 | 28.750 | 160 | 106 | 6 | 16 | 169 | 14 | 171 | 2.85e-14 | 70.1 |
| Msa0037250 | AT1G61210.3 | 27.500 | 160 | 108 | 6 | 16 | 169 | 14 | 171 | 5.05e-14 | 69.7 |
| Msa0037250 | AT1G61210.3 | 24.684 | 158 | 116 | 3 | 16 | 170 | 57 | 214 | 2.97e-11 | 61.6 |
| Msa0037250 | AT1G61210.2 | 27.500 | 160 | 108 | 6 | 16 | 169 | 14 | 171 | 8.08e-14 | 68.9 |
| Msa0037250 | AT1G61210.2 | 24.684 | 158 | 116 | 3 | 16 | 170 | 57 | 214 | 5.95e-11 | 60.5 |
| Msa0037250 | AT1G61210.1 | 27.500 | 160 | 108 | 6 | 16 | 169 | 14 | 171 | 8.16e-14 | 68.9 |
| Msa0037250 | AT1G61210.1 | 24.684 | 158 | 116 | 3 | 16 | 170 | 57 | 214 | 6.81e-11 | 60.5 |
| Msa0037250 | AT3G49660.1 | 26.582 | 158 | 112 | 4 | 16 | 169 | 70 | 227 | 8.55e-14 | 68.2 |
| Msa0037250 | AT3G49660.1 | 23.494 | 166 | 116 | 4 | 14 | 170 | 152 | 315 | 1.50e-11 | 62.0 |
| Msa0037250 | AT3G49660.1 | 27.329 | 161 | 110 | 4 | 16 | 169 | 112 | 272 | 2.42e-11 | 61.2 |
| Msa0037250 | AT5G25150.2 | 30.282 | 142 | 96 | 3 | 31 | 169 | 432 | 573 | 8.94e-14 | 68.6 |
| Msa0037250 | AT5G25150.1 | 30.282 | 142 | 96 | 3 | 31 | 169 | 432 | 573 | 9.13e-14 | 68.6 |
| Msa0037250 | AT2G43770.1 | 26.582 | 158 | 113 | 2 | 16 | 170 | 95 | 252 | 8.72e-13 | 65.5 |
| Msa0037250 | AT4G15900.1 | 24.528 | 159 | 117 | 2 | 16 | 171 | 217 | 375 | 9.42e-12 | 62.8 |
| Msa0037250 | AT1G11160.3 | 22.727 | 154 | 80 | 1 | 16 | 169 | 15 | 129 | 6.18e-11 | 60.5 |
| Msa0037250 | AT1G15440.2 | 33.028 | 109 | 67 | 4 | 67 | 170 | 314 | 421 | 8.32e-11 | 60.1 |
| Msa0037250 | AT1G15440.1 | 33.028 | 109 | 67 | 4 | 67 | 170 | 354 | 461 | 8.46e-11 | 60.1 |
Find 54 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAAAATTAATATTAAAA+AGG | 0.227965 | 1_1:+66224311 | None:intergenic |
| ATGATGGAGCTGTGAGATTA+TGG | 0.280439 | 1_1:-66224720 | Msa0037250:CDS |
| ACTTCAACTATTGCTCTTAC+TGG | 0.290120 | 1_1:-66226678 | Msa0037250:CDS |
| TTGTTTGATTGCATATGATA+TGG | 0.321150 | 1_1:-66224540 | Msa0037250:three_prime_UTR |
| AACTGTATGACAGTGGTTCC+TGG | 0.340668 | 1_1:-66225240 | Msa0037250:intron |
| CAAGCATGTATATGTCCTTT+AGG | 0.349274 | 1_1:-66224477 | Msa0037250:three_prime_UTR |
| GCATGGATAAAATGACCATC+TGG | 0.392161 | 1_1:-66225204 | Msa0037250:CDS |
| CCTCATGCTCACAAATGCTT+CGG | 0.405559 | 1_1:+66225161 | None:intergenic |
| CTCATGCTCACAAATGCTTC+GGG | 0.414517 | 1_1:+66225162 | None:intergenic |
| AGTGGTTCCTGGGCTGCAAT+TGG | 0.415085 | 1_1:-66225229 | Msa0037250:CDS |
| GCTCTTACTGGTTCTGTGGA+TGG | 0.419290 | 1_1:-66226666 | Msa0037250:CDS |
| TGTTTGATTGCATATGATAT+GGG | 0.430437 | 1_1:-66224539 | Msa0037250:three_prime_UTR |
| CTCACAAATGCTTCGGGCTA+AGG | 0.436027 | 1_1:+66225168 | None:intergenic |
| GGTTCCTGGGCTGCAATTGG+AGG | 0.441360 | 1_1:-66225226 | Msa0037250:CDS |
| GAATGTGTCAGAACATTTAG+AGG | 0.443558 | 1_1:-66224682 | Msa0037250:CDS |
| GGCACATCGTATGTGGCTAC+TGG | 0.459735 | 1_1:-66224748 | Msa0037250:CDS |
| TGCTAAACATGTTAATCCCT+CGG | 0.466251 | 1_1:+66226710 | None:intergenic |
| TCAAGTTCCATTGAGTGTGT+TGG | 0.479203 | 1_1:-66225822 | Msa0037250:CDS |
| TGATGGAGCTGTGAGATTAT+GGG | 0.479339 | 1_1:-66224719 | Msa0037250:CDS |
| TGCGAATCCAACACACTCAA+TGG | 0.480617 | 1_1:+66225815 | None:intergenic |
| CACATACGATGTGCCAAGCC+AGG | 0.485853 | 1_1:+66224756 | None:intergenic |
| CAAAGTGAGGAGTATGCTAA+TGG | 0.489682 | 1_1:-66228141 | Msa0037250:intron |
| CATGCCTCCAATTGCAGCCC+AGG | 0.491862 | 1_1:+66225222 | None:intergenic |
| CATAACATAAAACAACAATC+TGG | 0.505603 | 1_1:+66224430 | None:intergenic |
| TATTGCTCTTACTGGTTCTG+TGG | 0.506596 | 1_1:-66226670 | Msa0037250:CDS |
| AGGAACGCCCGCTGTCCTAA+AGG | 0.509497 | 1_1:+66224462 | None:intergenic |
| GTTAATCCCTCGGTATGGTA+TGG | 0.513418 | 1_1:+66226720 | None:intergenic |
| CATATTGTGAATATCACTAC+AGG | 0.527149 | 1_1:-66226636 | Msa0037250:CDS |
| CTGGCTTGGCACATCGTATG+TGG | 0.530171 | 1_1:-66224755 | Msa0037250:CDS |
| CTGGGCTGCAATTGGAGGCA+TGG | 0.532320 | 1_1:-66225221 | Msa0037250:CDS |
| AGATTATGGGACAGTCGATC+TGG | 0.536579 | 1_1:-66224706 | Msa0037250:CDS |
| TGGAACTTGAATGAGAAGGC+AGG | 0.549465 | 1_1:+66225835 | None:intergenic |
| GTTTGATTGCATATGATATG+GGG | 0.555606 | 1_1:-66224538 | Msa0037250:three_prime_UTR |
| TATATGTCCTTTAGGACAGC+GGG | 0.559132 | 1_1:-66224469 | Msa0037250:three_prime_UTR |
| ACTGTATGACAGTGGTTCCT+GGG | 0.563238 | 1_1:-66225239 | Msa0037250:intron |
| GTGGCTACTGGATCTAATGA+TGG | 0.564521 | 1_1:-66224736 | Msa0037250:CDS |
| CCGAAGCATTTGTGAGCATG+AGG | 0.565837 | 1_1:-66225161 | Msa0037250:intron |
| ATTTCTGCTCTAGAATGTCT+AGG | 0.565900 | 1_1:+66224359 | None:intergenic |
| CAACAATCTGGCTTCTGTAG+AGG | 0.567925 | 1_1:+66224442 | None:intergenic |
| TAATCACGAGTACCTTGTCT+CGG | 0.589265 | 1_1:-66224623 | Msa0037250:CDS |
| AACATGTTAATCCCTCGGTA+TGG | 0.591723 | 1_1:+66226715 | None:intergenic |
| CATGGATAAAATGACCATCT+GGG | 0.612989 | 1_1:-66225203 | Msa0037250:CDS |
| GGAACTTGAATGAGAAGGCA+GGG | 0.618213 | 1_1:+66225836 | None:intergenic |
| GTGACATGTTCAACCTGGCT+TGG | 0.626776 | 1_1:-66224769 | Msa0037250:CDS |
| GGTCATCCATACCATACCGA+GGG | 0.627020 | 1_1:-66226726 | Msa0037250:CDS |
| GATCTAAAGAAGCCGAGACA+AGG | 0.627111 | 1_1:+66224611 | None:intergenic |
| AGTGTGTTGGATTCGCACCA+AGG | 0.639273 | 1_1:-66225809 | Msa0037250:intron |
| ATGGAGTGACATGTTCAACC+TGG | 0.644264 | 1_1:-66224774 | Msa0037250:CDS |
| GGAGTGCTCTACATCCCAGA+TGG | 0.644840 | 1_1:+66225189 | None:intergenic |
| GATGAGTGAGCGTCAAAGTG+AGG | 0.646604 | 1_1:-66228154 | Msa0037250:CDS |
| AATGTGTCAGAACATTTAGA+GGG | 0.671297 | 1_1:-66224681 | Msa0037250:CDS |
| AGGTCATCCATACCATACCG+AGG | 0.684577 | 1_1:-66226727 | Msa0037250:CDS |
| TCAATGGAACTTGAATGAGA+AGG | 0.685059 | 1_1:+66225831 | None:intergenic |
| GTATATGTCCTTTAGGACAG+CGG | 0.693297 | 1_1:-66224470 | Msa0037250:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTTATGTAACAATTTTT+GGG | - | chr1_1:66224933-66224952 | Msa0037250:intron | 15.0% |
| !! | ATAATTTCAAAAATAACTGT+AGG | - | chr1_1:66225528-66225547 | Msa0037250:intron | 15.0% |
| !! | ATTCTTTGTATTTAATGTAT+CGG | + | chr1_1:66225589-66225608 | None:intergenic | 15.0% |
| !!! | TATCCTATTGTATTTTAATT+TGG | - | chr1_1:66227539-66227558 | Msa0037250:intron | 15.0% |
| !! | ATTCCAAATTAAAATACAAT+AGG | + | chr1_1:66227545-66227564 | None:intergenic | 15.0% |
| !!! | AATCAACCACTTTTTTTTTA+AGG | + | chr1_1:66224482-66224501 | None:intergenic | 20.0% |
| !!! | TTATGTTAAACCTTTTGAAT+TGG | - | chr1_1:66224562-66224581 | Msa0037250:exon | 20.0% |
| !! | AATTGGTATTCAATGATTTA+TGG | - | chr1_1:66224579-66224598 | Msa0037250:CDS | 20.0% |
| !! | AATAGATATGTCTTAAGAAA+CGG | - | chr1_1:66224868-66224887 | Msa0037250:intron | 20.0% |
| !! | AAAAAAATTGATAAGCAAGA+AGG | + | chr1_1:66224901-66224920 | None:intergenic | 20.0% |
| !!! | CAAAGTTATGTAACAATTTT+TGG | - | chr1_1:66224932-66224951 | Msa0037250:intron | 20.0% |
| !! | CATATCGTATCATAAAAATA+AGG | + | chr1_1:66225139-66225158 | None:intergenic | 20.0% |
| !! | ATCATATCATGTAAATAACA+GGG | + | chr1_1:66225563-66225582 | None:intergenic | 20.0% |
| !! | TATCATATCATGTAAATAAC+AGG | + | chr1_1:66225564-66225583 | None:intergenic | 20.0% |
| !!! | TTAGTTATGTTTCTAAGATT+TGG | - | chr1_1:66225898-66225917 | Msa0037250:intron | 20.0% |
| !! | AATATGTTAGAAACTAATGT+GGG | + | chr1_1:66226003-66226022 | None:intergenic | 20.0% |
| !! | AAATATGTTAGAAACTAATG+TGG | + | chr1_1:66226004-66226023 | None:intergenic | 20.0% |
| !!! | ATCCCAATTTTAATCATATT+GGG | + | chr1_1:66226101-66226120 | None:intergenic | 20.0% |
| !!! | TATCCCAATTTTAATCATAT+TGG | + | chr1_1:66226102-66226121 | None:intergenic | 20.0% |
| !! | AAACTCGATTACATTATATA+TGG | - | chr1_1:66226131-66226150 | Msa0037250:intron | 20.0% |
| !!! | AAATTGATTAGTCAAAAGTT+TGG | - | chr1_1:66226209-66226228 | Msa0037250:intron | 20.0% |
| !!! | TGCAACTTTATTTATGTAAA+AGG | - | chr1_1:66226456-66226475 | Msa0037250:intron | 20.0% |
| !!! | GCAACTTTATTTATGTAAAA+GGG | - | chr1_1:66226457-66226476 | Msa0037250:intron | 20.0% |
| !!! | ACTATTCATATTTAAGGTTT+AGG | + | chr1_1:66226966-66226985 | None:intergenic | 20.0% |
| !! | AAACCTTAAATATGAATAGT+TGG | - | chr1_1:66226966-66226985 | Msa0037250:intron | 20.0% |
| !!! | CTCAAAAGTTTTTTGTTTTA+TGG | - | chr1_1:66228113-66228132 | Msa0037250:intron | 20.0% |
| ! | AGGAAAAGTCTATGAATAAT+CGG | - | chr1_1:66224287-66224306 | Msa0037250:three_prime_UTR | 25.0% |
| !!! | CCACTTTTTTTTTAAGGTAT+TGG | + | chr1_1:66224476-66224495 | None:intergenic | 25.0% |
| ! | CCAATACCTTAAAAAAAAAG+TGG | - | chr1_1:66224473-66224492 | Msa0037250:three_prime_UTR | 25.0% |
| ! | AACATAAACCTTAGTAGAAA+GGG | + | chr1_1:66224549-66224568 | None:intergenic | 25.0% |
| ! | TAACATAAACCTTAGTAGAA+AGG | + | chr1_1:66224550-66224569 | None:intergenic | 25.0% |
| ! | TCATTGAATACCAATTCAAA+AGG | + | chr1_1:66224575-66224594 | None:intergenic | 25.0% |
| !! | TAACTTGTATCACACAAAAA+AGG | - | chr1_1:66224845-66224864 | Msa0037250:intron | 25.0% |
| ! | GTTCTTTGTATTTATCGTAA+AGG | + | chr1_1:66225162-66225181 | None:intergenic | 25.0% |
| !!! | TTTTTGAAATTATTGCCTTG+AGG | + | chr1_1:66225521-66225540 | None:intergenic | 25.0% |
| !!! | TCGTTAACCTTTACTTTTAT+AGG | - | chr1_1:66225640-66225659 | Msa0037250:intron | 25.0% |
| !!! | ATTTTTTGTGCATTAGTCTT+TGG | - | chr1_1:66225834-66225853 | Msa0037250:CDS | 25.0% |
| !!! | TTTTTTGTGCATTAGTCTTT+GGG | - | chr1_1:66225835-66225854 | Msa0037250:CDS | 25.0% |
| ! | CATAACTAAAGACATATGAA+AGG | + | chr1_1:66225887-66225906 | None:intergenic | 25.0% |
| ! | ATATGTTAGAAACTAATGTG+GGG | + | chr1_1:66226002-66226021 | None:intergenic | 25.0% |
| ! | TAATCATATTGGGGATAATT+GGG | + | chr1_1:66226091-66226110 | None:intergenic | 25.0% |
| ! | TTAATCATATTGGGGATAAT+TGG | + | chr1_1:66226092-66226111 | None:intergenic | 25.0% |
| ! | ATCCCCAATATGATTAAAAT+TGG | - | chr1_1:66226095-66226114 | Msa0037250:intron | 25.0% |
| ! | TCCCCAATATGATTAAAATT+GGG | - | chr1_1:66226096-66226115 | Msa0037250:intron | 25.0% |
| !!! | TCCCAATTTTAATCATATTG+GGG | + | chr1_1:66226100-66226119 | None:intergenic | 25.0% |
| ! | GATTACATTATATATGGAGA+TGG | - | chr1_1:66226137-66226156 | Msa0037250:intron | 25.0% |
| !! | AATGATGTTCTTTTGTAATG+TGG | - | chr1_1:66226332-66226351 | Msa0037250:intron | 25.0% |
| !!! | TATAAATTTAGCTTTCTGCT+TGG | - | chr1_1:66226488-66226507 | Msa0037250:intron | 25.0% |
| ! | ATGCCAACTATTCATATTTA+AGG | + | chr1_1:66226972-66226991 | None:intergenic | 25.0% |
| ! | TTGGCATAAGTGAAAATTAT+GGG | - | chr1_1:66226985-66227004 | Msa0037250:intron | 25.0% |
| ! | GTCTTAATCTAATGATGATT+TGG | - | chr1_1:66227075-66227094 | Msa0037250:intron | 25.0% |
| !! | CATATTTAATTAGGAGTACA+AGG | + | chr1_1:66227102-66227121 | None:intergenic | 25.0% |
| ! | TTAAGGAACAAAGTTATTGA+GGG | + | chr1_1:66227127-66227146 | None:intergenic | 25.0% |
| ! | TTTAAGGAACAAAGTTATTG+AGG | + | chr1_1:66227128-66227147 | None:intergenic | 25.0% |
| ! | TTGTTTGATTGCATATGATA+TGG | - | chr1_1:66227847-66227866 | Msa0037250:intron | 25.0% |
| ! | TGTTTGATTGCATATGATAT+GGG | - | chr1_1:66227848-66227867 | Msa0037250:intron | 25.0% |
| ! | CATAACATAAAACAACAATC+TGG | + | chr1_1:66227960-66227979 | None:intergenic | 25.0% |
| !!! | TGTTGTTTTATGTTATGTTG+TGG | - | chr1_1:66227963-66227982 | Msa0037250:intron | 25.0% |
| !! | AGAAATGTGATTGTCTTTTA+AGG | - | chr1_1:66228045-66228064 | Msa0037250:intron | 25.0% |
| TAGTGCACTTAACAAGTATA+AGG | + | chr1_1:66224353-66224372 | None:intergenic | 30.0% | |
| !! | ATAATGGGTGTTTAAGGAAA+AGG | + | chr1_1:66224386-66224405 | None:intergenic | 30.0% |
| AATACATGGATAATAGATCC+AGG | + | chr1_1:66224662-66224681 | None:intergenic | 30.0% | |
| CATCTACAGAAATGAATACA+TGG | + | chr1_1:66224676-66224695 | None:intergenic | 30.0% | |
| CTTGATATTGATAAGGAAAG+TGG | + | chr1_1:66224975-66224994 | None:intergenic | 30.0% | |
| TTCCTTATCAATATCAAGCA+AGG | - | chr1_1:66224977-66224996 | Msa0037250:intron | 30.0% | |
| AGTGAAATTGAGAAATATCC+TGG | - | chr1_1:66225013-66225032 | Msa0037250:intron | 30.0% | |
| GTTGGAGCATATAAATCATA+TGG | - | chr1_1:66225210-66225229 | Msa0037250:CDS | 30.0% | |
| AATTTGACAAAGTTGTGATG+TGG | - | chr1_1:66225302-66225321 | Msa0037250:intron | 30.0% | |
| !! | AATTTGTTAAGCACGACTTA+GGG | - | chr1_1:66225384-66225403 | Msa0037250:intron | 30.0% |
| ! | AGGCAATATAAAATTGACTC+TGG | + | chr1_1:66225501-66225520 | None:intergenic | 30.0% |
| ! | GTCAATTTTATATTGCCTCA+AGG | - | chr1_1:66225503-66225522 | Msa0037250:intron | 30.0% |
| TGGATGACCTATAAAAGTAA+AGG | + | chr1_1:66225650-66225669 | None:intergenic | 30.0% | |
| CATATTGTGAATATCACTAC+AGG | - | chr1_1:66225751-66225770 | Msa0037250:intron | 30.0% | |
| !!! | TTTTTGTGCATTAGTCTTTG+GGG | - | chr1_1:66225836-66225855 | Msa0037250:CDS | 30.0% |
| TTATAAACATAGGTTCGTTC+AGG | + | chr1_1:66225963-66225982 | None:intergenic | 30.0% | |
| TGAACGAACCTATGTTTATA+AGG | - | chr1_1:66225962-66225981 | Msa0037250:intron | 30.0% | |
| GAACGAACCTATGTTTATAA+GGG | - | chr1_1:66225963-66225982 | Msa0037250:intron | 30.0% | |
| TGTCTTTCCCTTATAAACAT+AGG | + | chr1_1:66225973-66225992 | None:intergenic | 30.0% | |
| ! | TAACATATTTTCACGAGTCA+GGG | - | chr1_1:66226014-66226033 | Msa0037250:intron | 30.0% |
| AATCATATTGGGGATAATTG+GGG | + | chr1_1:66226090-66226109 | None:intergenic | 30.0% | |
| !! | TAATCAACCCAACTGTTTTT+GGG | - | chr1_1:66226278-66226297 | Msa0037250:intron | 30.0% |
| GATAAAACCCAAAAACAGTT+GGG | + | chr1_1:66226288-66226307 | None:intergenic | 30.0% | |
| AGATAAAACCCAAAAACAGT+TGG | + | chr1_1:66226289-66226308 | None:intergenic | 30.0% | |
| !!! | GTTTTTGGGTTTTATCTCAT+CGG | - | chr1_1:66226292-66226311 | Msa0037250:intron | 30.0% |
| AAGGATAAGTGATGAAAGTT+TGG | + | chr1_1:66226405-66226424 | None:intergenic | 30.0% | |
| AAATGTTGTATCTTGTTGAC+AGG | - | chr1_1:66226519-66226538 | Msa0037250:intron | 30.0% | |
| ATGACTGTAACTCTATAATG+CGG | + | chr1_1:66226738-66226757 | None:intergenic | 30.0% | |
| CTACTTCTTTCAAACATCAA+CGG | + | chr1_1:66226806-66226825 | None:intergenic | 30.0% | |
| GTTGATGTTTGAAAGAAGTA+GGG | - | chr1_1:66226805-66226824 | Msa0037250:intron | 30.0% | |
| TATTTACGAGTCATAACACT+TGG | + | chr1_1:66226858-66226877 | None:intergenic | 30.0% | |
| GTTGGCATAAGTGAAAATTA+TGG | - | chr1_1:66226984-66227003 | Msa0037250:intron | 30.0% | |
| TTGAGGGCTCATATTTAATT+AGG | + | chr1_1:66227111-66227130 | None:intergenic | 30.0% | |
| ! | AATCAACACCCATTTTCTTA+TGG | - | chr1_1:66227376-66227395 | Msa0037250:intron | 30.0% |
| ! | ATCAACACCCATTTTCTTAT+GGG | - | chr1_1:66227377-66227396 | Msa0037250:intron | 30.0% |
| GATTTCACCCATAAGAAAAT+GGG | + | chr1_1:66227387-66227406 | None:intergenic | 30.0% | |
| ! | CATTTTCTTATGGGTGAAAT+CGG | - | chr1_1:66227386-66227405 | Msa0037250:intron | 30.0% |
| ! | ATTTTCTTATGGGTGAAATC+GGG | - | chr1_1:66227387-66227406 | Msa0037250:intron | 30.0% |
| AGTCTCACCATATTGAAAAT+GGG | + | chr1_1:66227437-66227456 | None:intergenic | 30.0% | |
| AATGTGTCAGAACATTTAGA+GGG | - | chr1_1:66227706-66227725 | Msa0037250:intron | 30.0% | |
| GTTTGATTGCATATGATATG+GGG | - | chr1_1:66227849-66227868 | Msa0037250:intron | 30.0% | |
| !!! | CTAATCAAAACCCCTTTTTT+TGG | - | chr1_1:66227883-66227902 | Msa0037250:intron | 30.0% |
| ! | CATAAGGTTTCGAATTTTGA+CGG | - | chr1_1:66228004-66228023 | Msa0037250:intron | 30.0% |
| !!! | AGTTTTTTGTTTTATGGCGA+TGG | - | chr1_1:66228119-66228138 | Msa0037250:intron | 30.0% |
| !!! | GTTTTTTGTTTTATGGCGAT+GGG | - | chr1_1:66228120-66228139 | Msa0037250:intron | 30.0% |
| TCCTTAAACACCCATTATGA+TGG | - | chr1_1:66224388-66224407 | Msa0037250:three_prime_UTR | 35.0% | |
| ATGTTCACTACCACATAATG+GGG | + | chr1_1:66224431-66224450 | None:intergenic | 35.0% | |
| CATGTTCACTACCACATAAT+GGG | + | chr1_1:66224432-66224451 | None:intergenic | 35.0% | |
| ACATGTTCACTACCACATAA+TGG | + | chr1_1:66224433-66224452 | None:intergenic | 35.0% | |
| GAATCTACAGGAGTAAATAC+AGG | + | chr1_1:66224640-66224659 | None:intergenic | 35.0% | |
| TATTTACTCCTGTAGATTCC+TGG | - | chr1_1:66224641-66224660 | Msa0037250:CDS | 35.0% | |
| TAATAGATCCAGGAATCTAC+AGG | + | chr1_1:66224652-66224671 | None:intergenic | 35.0% | |
| TATTCATTTCTGTAGATGCC+TGG | - | chr1_1:66224678-66224697 | Msa0037250:CDS | 35.0% | |
| TATCATCCAAAACAGAAACC+TGG | - | chr1_1:66224704-66224723 | Msa0037250:CDS | 35.0% | |
| TCAGAGCTCTTTAGACTATT+TGG | - | chr1_1:66224754-66224773 | Msa0037250:CDS | 35.0% | |
| CAGAGCTCTTTAGACTATTT+GGG | - | chr1_1:66224755-66224774 | Msa0037250:CDS | 35.0% | |
| ATTGATAAGCAAGAAGGTTG+TGG | + | chr1_1:66224895-66224914 | None:intergenic | 35.0% | |
| GACCTTGCTTGATATTGATA+AGG | + | chr1_1:66224982-66225001 | None:intergenic | 35.0% | |
| ATTCATGTCAAATTGCAGCT+TGG | - | chr1_1:66225061-66225080 | Msa0037250:intron | 35.0% | |
| !! | CAGCTTGGTCGATTTTATAT+AGG | - | chr1_1:66225076-66225095 | Msa0037250:intron | 35.0% |
| TTATATGCTCCAACTTGAGA+GGG | + | chr1_1:66225204-66225223 | None:intergenic | 35.0% | |
| TTTATATGCTCCAACTTGAG+AGG | + | chr1_1:66225205-66225224 | None:intergenic | 35.0% | |
| ! | AGAAGCATATTGAGATAGAC+TGG | + | chr1_1:66225357-66225376 | None:intergenic | 35.0% |
| AGTCGTGCTTAACAAATTGA+GGG | + | chr1_1:66225382-66225401 | None:intergenic | 35.0% | |
| AAGTCGTGCTTAACAAATTG+AGG | + | chr1_1:66225383-66225402 | None:intergenic | 35.0% | |
| !! | CAATTTGTTAAGCACGACTT+AGG | - | chr1_1:66225383-66225402 | Msa0037250:intron | 35.0% |
| CTCAATATGAAATGAGCCTA+TGG | + | chr1_1:66225418-66225437 | None:intergenic | 35.0% | |
| TGCTAAACATGTTAATCCCT+CGG | + | chr1_1:66225680-66225699 | None:intergenic | 35.0% | |
| ACTTCAACTATTGCTCTTAC+TGG | - | chr1_1:66225709-66225728 | Msa0037250:intron | 35.0% | |
| TAATGTGAGACTCAACATTC+TGG | + | chr1_1:66225928-66225947 | None:intergenic | 35.0% | |
| TTAGAAACTAATGTGGGGAA+GGG | + | chr1_1:66225997-66226016 | None:intergenic | 35.0% | |
| ! | CTAACATATTTTCACGAGTC+AGG | - | chr1_1:66226013-66226032 | Msa0037250:intron | 35.0% |
| ! | GATTAGTCAAAAGTTTGGCT+TGG | - | chr1_1:66226214-66226233 | Msa0037250:intron | 35.0% |
| ! | GTAATCAACCCAACTGTTTT+TGG | - | chr1_1:66226277-66226296 | Msa0037250:intron | 35.0% |
| AAAAGGAACAAACTAGCACA+AGG | + | chr1_1:66226424-66226443 | None:intergenic | 35.0% | |
| TCAATGGAACTTGAATGAGA+AGG | + | chr1_1:66226559-66226578 | None:intergenic | 35.0% | |
| !! | GCTAGTCTTAAAACATACCT+TGG | + | chr1_1:66226598-66226617 | None:intergenic | 35.0% |
| TGACTGTAACTCTATAATGC+GGG | + | chr1_1:66226737-66226756 | None:intergenic | 35.0% | |
| CGTTGATGTTTGAAAGAAGT+AGG | - | chr1_1:66226804-66226823 | Msa0037250:intron | 35.0% | |
| GTAATTCCATCTCATTCTCA+AGG | - | chr1_1:66226920-66226939 | Msa0037250:intron | 35.0% | |
| ATCATTCCTTGAGAATGAGA+TGG | + | chr1_1:66226929-66226948 | None:intergenic | 35.0% | |
| TCCTTAAAACTGTATGACAG+TGG | - | chr1_1:66227140-66227159 | Msa0037250:intron | 35.0% | |
| ! | ACCACTGTCATACAGTTTTA+AGG | + | chr1_1:66227144-66227163 | None:intergenic | 35.0% |
| CATGGATAAAATGACCATCT+GGG | - | chr1_1:66227184-66227203 | Msa0037250:intron | 35.0% | |
| CGATTTCACCCATAAGAAAA+TGG | + | chr1_1:66227388-66227407 | None:intergenic | 35.0% | |
| GAGTCTCACCATATTGAAAA+TGG | + | chr1_1:66227438-66227457 | None:intergenic | 35.0% | |
| ATAGGATATGCATGAACATC+AGG | + | chr1_1:66227527-66227546 | None:intergenic | 35.0% | |
| GAATGTGTCAGAACATTTAG+AGG | - | chr1_1:66227705-66227724 | Msa0037250:intron | 35.0% | |
| ATGCTTGTGTGCCAAAAAAA+GGG | + | chr1_1:66227897-66227916 | None:intergenic | 35.0% | |
| CAAGCATGTATATGTCCTTT+AGG | - | chr1_1:66227910-66227929 | Msa0037250:intron | 35.0% | |
| GAGTCAAAAACTGTTGCATA+AGG | - | chr1_1:66227988-66228007 | Msa0037250:intron | 35.0% | |
| !! | ATTTCTGCTCTAGAATGTCT+AGG | + | chr1_1:66228031-66228050 | None:intergenic | 35.0% |
| ! | CAAAGTGAGGAGTATGCTAA+TGG | - | chr1_1:66224246-66224265 | Msa0037250:three_prime_UTR | 40.0% |
| ! | GGTGACTGACTTTACAATAG+AGG | - | chr1_1:66224267-66224286 | Msa0037250:three_prime_UTR | 40.0% |
| AATCGGAACCTGATTGTTGT+TGG | - | chr1_1:66224304-66224323 | Msa0037250:three_prime_UTR | 40.0% | |
| AACGGTTTCCAACAACAATC+AGG | + | chr1_1:66224315-66224334 | None:intergenic | 40.0% | |
| AGGCTCAACTTGATGCAAAA+CGG | + | chr1_1:66224333-66224352 | None:intergenic | 40.0% | |
| !! | GCCATCATAATGGGTGTTTA+AGG | + | chr1_1:66224392-66224411 | None:intergenic | 40.0% |
| ATCTGCAGTGCCATCATAAT+GGG | + | chr1_1:66224401-66224420 | None:intergenic | 40.0% | |
| AATCTGCAGTGCCATCATAA+TGG | + | chr1_1:66224402-66224421 | None:intergenic | 40.0% | |
| TTATGATGGCACTGCAGATT+AGG | - | chr1_1:66224402-66224421 | Msa0037250:three_prime_UTR | 40.0% | |
| TACTGCTTATTGCCTAGACA+AGG | - | chr1_1:66224505-66224524 | Msa0037250:three_prime_UTR | 40.0% | |
| ACCTTAGTAGAAAGGGTAGT+TGG | + | chr1_1:66224542-66224561 | None:intergenic | 40.0% | |
| !! | CTGTTTTGGATGATAGATCC+AGG | + | chr1_1:66224699-66224718 | None:intergenic | 40.0% |
| AGCTCTTTAGACTATTTGGG+CGG | - | chr1_1:66224758-66224777 | Msa0037250:CDS | 40.0% | |
| CTAGATTTGACAACATTCCC+AGG | + | chr1_1:66224811-66224830 | None:intergenic | 40.0% | |
| CTGGGAATGTTGTCAAATCT+AGG | - | chr1_1:66224809-66224828 | Msa0037250:intron | 40.0% | |
| !! | ACTGATTTGTGTACCTCTCA+AGG | - | chr1_1:66225254-66225273 | Msa0037250:intron | 40.0% |
| GTGTTCACTAAATCCTTGAG+AGG | + | chr1_1:66225270-66225289 | None:intergenic | 40.0% | |
| GCTAGGGAGAAGATCAAATT+GGG | + | chr1_1:66225328-66225347 | None:intergenic | 40.0% | |
| TGCTAGGGAGAAGATCAAAT+TGG | + | chr1_1:66225329-66225348 | None:intergenic | 40.0% | |
| GTCGTGCTTAACAAATTGAG+GGG | + | chr1_1:66225381-66225400 | None:intergenic | 40.0% | |
| AGAGAGACAAAGGAGACATA+TGG | - | chr1_1:66225450-66225469 | Msa0037250:intron | 40.0% | |
| ! | CATATGGTGACACCATGTTT+TGG | - | chr1_1:66225466-66225485 | Msa0037250:intron | 40.0% |
| TGGTGTGTAGTTCCAAAACA+TGG | + | chr1_1:66225481-66225500 | None:intergenic | 40.0% | |
| AACATGTTAATCCCTCGGTA+TGG | + | chr1_1:66225675-66225694 | None:intergenic | 40.0% | |
| !! | TATTGCTCTTACTGGTTCTG+TGG | - | chr1_1:66225717-66225736 | Msa0037250:intron | 40.0% |
| GTTAGAAACTAATGTGGGGA+AGG | + | chr1_1:66225998-66226017 | None:intergenic | 40.0% | |
| !! | TAGTCAAAAGTTTGGCTTGG+TGG | - | chr1_1:66226217-66226236 | Msa0037250:intron | 40.0% |
| !! | TTGGGTTGATTACCTACTCA+AGG | + | chr1_1:66226270-66226289 | None:intergenic | 40.0% |
| TAATGTGGTCTGTGTAGTAC+TGG | - | chr1_1:66226347-66226366 | Msa0037250:intron | 40.0% | |
| TTGCAGCATGCAAAGACAAA+AGG | + | chr1_1:66226441-66226460 | None:intergenic | 40.0% | |
| TCAAGTTCCATTGAGTGTGT+TGG | - | chr1_1:66226565-66226584 | Msa0037250:intron | 40.0% | |
| TCATGTCCATGTATGCTTGT+CGG | - | chr1_1:66226660-66226679 | Msa0037250:CDS | 40.0% | |
| GCATGGATAAAATGACCATC+TGG | - | chr1_1:66227183-66227202 | Msa0037250:intron | 40.0% | |
| TTTGTGAGCATGAGGTTTGT+TGG | - | chr1_1:66227234-66227253 | Msa0037250:intron | 40.0% | |
| ! | TGTGGAGCCCATTTTCAATA+TGG | - | chr1_1:66227427-66227446 | Msa0037250:intron | 40.0% |
| TTTCCATTCTCTGAGCAGTA+TGG | - | chr1_1:66227594-66227613 | Msa0037250:intron | 40.0% | |
| ! | ATGATGGAGCTGTGAGATTA+TGG | - | chr1_1:66227667-66227686 | Msa0037250:intron | 40.0% |
| TGATGGAGCTGTGAGATTAT+GGG | - | chr1_1:66227668-66227687 | Msa0037250:intron | 40.0% | |
| TAATCACGAGTACCTTGTCT+CGG | - | chr1_1:66227764-66227783 | Msa0037250:intron | 40.0% | |
| ! | GCTCGTGTTTTCGATGTTAA+AGG | - | chr1_1:66227804-66227823 | Msa0037250:intron | 40.0% |
| TGCTTGTGTGCCAAAAAAAG+GGG | + | chr1_1:66227896-66227915 | None:intergenic | 40.0% | |
| CATGCTTGTGTGCCAAAAAA+AGG | + | chr1_1:66227898-66227917 | None:intergenic | 40.0% | |
| !! | GTATATGTCCTTTAGGACAG+CGG | - | chr1_1:66227917-66227936 | Msa0037250:intron | 40.0% |
| !! | TATATGTCCTTTAGGACAGC+GGG | - | chr1_1:66227918-66227937 | Msa0037250:intron | 40.0% |
| ! | TTCACTACCACATAATGGGG+TGG | + | chr1_1:66224428-66224447 | None:intergenic | 45.0% |
| GCCAACTACCCTTTCTACTA+AGG | - | chr1_1:66224538-66224557 | Msa0037250:three_prime_UTR | 45.0% | |
| TACAGGTAGCAGCAACAAGA+GGG | + | chr1_1:66224623-66224642 | None:intergenic | 45.0% | |
| ATACAGGTAGCAGCAACAAG+AGG | + | chr1_1:66224624-66224643 | None:intergenic | 45.0% | |
| !! | AGAGTGCCAGGTTTCTGTTT+TGG | + | chr1_1:66224713-66224732 | None:intergenic | 45.0% |
| GCTCTTTAGACTATTTGGGC+GGG | - | chr1_1:66224759-66224778 | Msa0037250:CDS | 45.0% | |
| CTCTTTAGACTATTTGGGCG+GGG | - | chr1_1:66224760-66224779 | Msa0037250:CDS | 45.0% | |
| TTTGACAACATTCCCAGGAC+AGG | + | chr1_1:66224806-66224825 | None:intergenic | 45.0% | |
| TTCAACACTCCCTCTCAAGT+TGG | - | chr1_1:66225192-66225211 | Msa0037250:CDS | 45.0% | |
| GATAGACTGGCACATTGCTA+GGG | + | chr1_1:66225344-66225363 | None:intergenic | 45.0% | |
| AGATAGACTGGCACATTGCT+AGG | + | chr1_1:66225345-66225364 | None:intergenic | 45.0% | |
| TGTTAAGCACGACTTAGGGT+TGG | - | chr1_1:66225388-66225407 | Msa0037250:intron | 45.0% | |
| AGAGTGAGAGAGAGAGACAA+AGG | - | chr1_1:66225440-66225459 | Msa0037250:intron | 45.0% | |
| GTTAATCCCTCGGTATGGTA+TGG | + | chr1_1:66225670-66225689 | None:intergenic | 45.0% | |
| ACACTATGAGCTCCTTGAGT+AGG | - | chr1_1:66226255-66226274 | Msa0037250:intron | 45.0% | |
| ! | GTGATGAAAGTTTGGAGCCT+TGG | + | chr1_1:66226397-66226416 | None:intergenic | 45.0% |
| GGAACTTGAATGAGAAGGCA+GGG | + | chr1_1:66226554-66226573 | None:intergenic | 45.0% | |
| TGGAACTTGAATGAGAAGGC+AGG | + | chr1_1:66226555-66226574 | None:intergenic | 45.0% | |
| TGCGAATCCAACACACTCAA+TGG | + | chr1_1:66226575-66226594 | None:intergenic | 45.0% | |
| CATGATCCGACAAGCATACA+TGG | + | chr1_1:66226669-66226688 | None:intergenic | 45.0% | |
| TGTCGGATCATGCATGTGTA+TGG | - | chr1_1:66226677-66226696 | Msa0037250:CDS | 45.0% | |
| ACCGTCAGTGACTTTGTTCA+CGG | - | chr1_1:66226878-66226897 | Msa0037250:intron | 45.0% | |
| ACCGTGAACAAAGTCACTGA+CGG | + | chr1_1:66226882-66226901 | None:intergenic | 45.0% | |
| AACTGTATGACAGTGGTTCC+TGG | - | chr1_1:66227147-66227166 | Msa0037250:intron | 45.0% | |
| ACTGTATGACAGTGGTTCCT+GGG | - | chr1_1:66227148-66227167 | Msa0037250:intron | 45.0% | |
| CTCATGCTCACAAATGCTTC+GGG | + | chr1_1:66227228-66227247 | None:intergenic | 45.0% | |
| CCTCATGCTCACAAATGCTT+CGG | + | chr1_1:66227229-66227248 | None:intergenic | 45.0% | |
| TGTTAGAACTACTCGACGAG+AGG | + | chr1_1:66227330-66227349 | None:intergenic | 45.0% | |
| TTCTTATGGGTGAAATCGGG+TGG | - | chr1_1:66227390-66227409 | Msa0037250:intron | 45.0% | |
| TCTTATGGGTGAAATCGGGT+GGG | - | chr1_1:66227391-66227410 | Msa0037250:intron | 45.0% | |
| TGGGCTCCACATAAAGTTGT+GGG | + | chr1_1:66227418-66227437 | None:intergenic | 45.0% | |
| ATGGGCTCCACATAAAGTTG+TGG | + | chr1_1:66227419-66227438 | None:intergenic | 45.0% | |
| ACTCCATACTGCTCAGAGAA+TGG | + | chr1_1:66227600-66227619 | None:intergenic | 45.0% | |
| ATGGAGTGACATGTTCAACC+TGG | - | chr1_1:66227613-66227632 | Msa0037250:intron | 45.0% | |
| GTGGCTACTGGATCTAATGA+TGG | - | chr1_1:66227651-66227670 | Msa0037250:intron | 45.0% | |
| AGATTATGGGACAGTCGATC+TGG | - | chr1_1:66227681-66227700 | Msa0037250:intron | 45.0% | |
| GATCTAAAGAAGCCGAGACA+AGG | + | chr1_1:66227779-66227798 | None:intergenic | 45.0% | |
| ! | CAACAATCTGGCTTCTGTAG+AGG | + | chr1_1:66227948-66227967 | None:intergenic | 45.0% |
| !! | ATTCAAAATTAATATTAAAA+AGG | + | chr1_1:66228079-66228098 | None:intergenic | 5.0% |
| GATTAGGCCACCCCATTATG+TGG | - | chr1_1:66224418-66224437 | Msa0037250:three_prime_UTR | 50.0% | |
| GCAGACAATGTGCCTTGTCT+AGG | + | chr1_1:66224520-66224539 | None:intergenic | 50.0% | |
| CAGCAACAAGAGGGTTCCAT+GGG | + | chr1_1:66224614-66224633 | None:intergenic | 50.0% | |
| ACAGAAACCTGGCACTCTCA+TGG | - | chr1_1:66224715-66224734 | Msa0037250:CDS | 50.0% | |
| !! | TGTAAGACCATGAGAGTGCC+AGG | + | chr1_1:66224725-66224744 | None:intergenic | 50.0% |
| TTTAGACTATTTGGGCGGGG+AGG | - | chr1_1:66224763-66224782 | Msa0037250:CDS | 50.0% | |
| TTAGACTATTTGGGCGGGGA+GGG | - | chr1_1:66224764-66224783 | Msa0037250:CDS | 50.0% | |
| TCTTACGTTCAGACCTGTCC+TGG | - | chr1_1:66224790-66224809 | Msa0037250:intron | 50.0% | |
| CTTACGTTCAGACCTGTCCT+GGG | - | chr1_1:66224791-66224810 | Msa0037250:intron | 50.0% | |
| GAAGCTATAGTGAGTGTGCC+AGG | + | chr1_1:66225034-66225053 | None:intergenic | 50.0% | |
| !! | ACTTAGGGTTGGCTCTCCAT+AGG | - | chr1_1:66225399-66225418 | Msa0037250:intron | 50.0% |
| AGGTCATCCATACCATACCG+AGG | - | chr1_1:66225660-66225679 | Msa0037250:intron | 50.0% | |
| GGTCATCCATACCATACCGA+GGG | - | chr1_1:66225661-66225680 | Msa0037250:intron | 50.0% | |
| !! | GCTCTTACTGGTTCTGTGGA+TGG | - | chr1_1:66225721-66225740 | Msa0037250:intron | 50.0% |
| CTGCAAGAGCTGACTAACCA+AGG | - | chr1_1:66226377-66226396 | Msa0037250:intron | 50.0% | |
| AGTGTGTTGGATTCGCACCA+AGG | - | chr1_1:66226578-66226597 | Msa0037250:intron | 50.0% | |
| GCACGAATGCACATAGACAC+AGG | + | chr1_1:66226634-66226653 | None:intergenic | 50.0% | |
| CTCACAAATGCTTCGGGCTA+AGG | + | chr1_1:66227222-66227241 | None:intergenic | 50.0% | |
| ! | CCGAAGCATTTGTGAGCATG+AGG | - | chr1_1:66227226-66227245 | Msa0037250:intron | 50.0% |
| TAGAACTACTCGACGAGAGG+AGG | + | chr1_1:66227327-66227346 | None:intergenic | 50.0% | |
| GTGGGTCCCACAACTTTATG+TGG | - | chr1_1:66227409-66227428 | Msa0037250:intron | 50.0% | |
| GTGACATGTTCAACCTGGCT+TGG | - | chr1_1:66227618-66227637 | Msa0037250:intron | 50.0% | |
| CAACAAGAGGGTTCCATGGG+CGG | + | chr1_1:66224611-66224630 | None:intergenic | 55.0% | |
| GCAGCAACAAGAGGGTTCCA+TGG | + | chr1_1:66224615-66224634 | None:intergenic | 55.0% | |
| TAGACTATTTGGGCGGGGAG+GGG | - | chr1_1:66224765-66224784 | Msa0037250:CDS | 55.0% | |
| AGTGGTTCCTGGGCTGCAAT+TGG | - | chr1_1:66227158-66227177 | Msa0037250:intron | 55.0% | |
| ! | GGAGTGCTCTACATCCCAGA+TGG | + | chr1_1:66227201-66227220 | None:intergenic | 55.0% |
| CACATACGATGTGCCAAGCC+AGG | + | chr1_1:66227634-66227653 | None:intergenic | 55.0% | |
| !! | CTGGCTTGGCACATCGTATG+TGG | - | chr1_1:66227632-66227651 | Msa0037250:intron | 55.0% |
| GGCACATCGTATGTGGCTAC+TGG | - | chr1_1:66227639-66227658 | Msa0037250:intron | 55.0% | |
| TTTATGGAGCCCTCCGCCCA+TGG | - | chr1_1:66224595-66224614 | Msa0037250:CDS | 60.0% | |
| AAGAGGGTTCCATGGGCGGA+GGG | + | chr1_1:66224607-66224626 | None:intergenic | 60.0% | |
| AGACTATTTGGGCGGGGAGG+GGG | - | chr1_1:66224766-66224785 | Msa0037250:CDS | 60.0% | |
| GGTTCCTGGGCTGCAATTGG+AGG | - | chr1_1:66227161-66227180 | Msa0037250:intron | 60.0% | |
| CATGCCTCCAATTGCAGCCC+AGG | + | chr1_1:66227168-66227187 | None:intergenic | 60.0% | |
| CTGGGCTGCAATTGGAGGCA+TGG | - | chr1_1:66227166-66227185 | Msa0037250:intron | 60.0% | |
| AGGAACGCCCGCTGTCCTAA+AGG | + | chr1_1:66227928-66227947 | None:intergenic | 60.0% | |
| CAAGAGGGTTCCATGGGCGG+AGG | + | chr1_1:66224608-66224627 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 66224234 | 66228175 | 66224234 | ID=Msa0037250;Name=Msa0037250 |
| chr1_1 | mRNA | 66224234 | 66228175 | 66224234 | ID=Msa0037250-mRNA-1;Parent=Msa0037250;Name=Msa0037250-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.75|0.6|0.8|1|1|5|339|173 |
| chr1_1 | exon | 66224234 | 66224797 | 66224234 | ID=Msa0037250-mRNA-1:exon:21393;Parent=Msa0037250-mRNA-1 |
| chr1_1 | exon | 66225162 | 66225249 | 66225162 | ID=Msa0037250-mRNA-1:exon:21392;Parent=Msa0037250-mRNA-1 |
| chr1_1 | exon | 66225810 | 66225868 | 66225810 | ID=Msa0037250-mRNA-1:exon:21391;Parent=Msa0037250-mRNA-1 |
| chr1_1 | exon | 66226632 | 66226747 | 66226632 | ID=Msa0037250-mRNA-1:exon:21390;Parent=Msa0037250-mRNA-1 |
| chr1_1 | exon | 66228142 | 66228175 | 66228142 | ID=Msa0037250-mRNA-1:exon:21389;Parent=Msa0037250-mRNA-1 |
| chr1_1 | CDS | 66228142 | 66228175 | 66228142 | ID=Msa0037250-mRNA-1:cds;Parent=Msa0037250-mRNA-1 |
| chr1_1 | CDS | 66226632 | 66226747 | 66226632 | ID=Msa0037250-mRNA-1:cds;Parent=Msa0037250-mRNA-1 |
| chr1_1 | CDS | 66225810 | 66225868 | 66225810 | ID=Msa0037250-mRNA-1:cds;Parent=Msa0037250-mRNA-1 |
| chr1_1 | CDS | 66225162 | 66225249 | 66225162 | ID=Msa0037250-mRNA-1:cds;Parent=Msa0037250-mRNA-1 |
| chr1_1 | CDS | 66224573 | 66224797 | 66224573 | ID=Msa0037250-mRNA-1:cds;Parent=Msa0037250-mRNA-1 |
| chr1_1 | three_prime_UTR | 66224234 | 66224572 | 66224234 | ID=Msa0037250-mRNA-1:three_prime_utr;Parent=Msa0037250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
