AlfalfaGEDB | Msa0056470

M. sativa cultivar zhongmu-4 / Msa0056470

KEGG: K12896
GO: GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033119 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050657 GO:0050658 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0056470	XP_024630973.1	97.368	190	1	2	1	186	1	190	6.35e-117	339

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0056470	sp\|O81126\|RSZ22_ARATH	69.000	200	48	3	1	186	1	200	2.97e-70	214

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0056470	A0A396JEY3	97.368	190	1	2	1	186	1	190	3.03e-117	339

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0056470	0.853700	2.009009e-61	-8.615850e-47
Msa0002750	Msa0056470	0.834970	2.202976e-56	-8.615850e-47
Msa0002790	Msa0056470	0.821055	4.947778e-53	-8.615850e-47
Msa0003780	Msa0056470	0.843203	1.619171e-58	-8.615850e-47
Msa0006380	Msa0056470	0.805106	1.566791e-49	-8.615850e-47
Msa0006910	Msa0056470	0.807075	6.033584e-50	-8.615850e-47
Msa0008090	Msa0056470	0.804211	2.408497e-49	-8.615850e-47
Msa0009430	Msa0056470	0.813267	2.790957e-51	-8.615850e-47
Msa0011960	Msa0056470	0.810551	1.089587e-50	-8.615850e-47
Msa0025730	Msa0056470	0.827115	1.869291e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0056470	MtrunA17_Chr1g0147821	97.368	190	1	2	1	186	1	190	5.84e-121	339
Msa0056470	MtrunA17_Chr8g0365051	75.135	185	36	6	1	176	1	184	6.71e-68	205
Msa0056470	MtrunA17_Chr3g0139061	77.500	200	30	3	1	186	1	199	2.24e-57	179
Msa0056470	MtrunA17_Chr7g0263341	33.333	222	84	7	2	168	11	223	3.21e-13	66.6
Msa0056470	MtrunA17_Chr7g0269331	43.750	96	41	4	4	92	9	98	2.53e-12	63.9
Msa0056470	MtrunA17_Chr1g0210241	35.433	127	61	4	2	108	7	132	2.62e-11	60.8
Msa0056470	MtrunA17_Chr7g0272311	47.945	73	32	2	4	70	9	81	3.27e-11	60.8
Msa0056470	MtrunA17_Chr3g0127781	46.575	73	33	2	4	70	9	81	4.54e-11	60.1
Msa0056470	MtrunA17_Chr3g0080801	33.077	130	82	1	2	126	68	197	8.14e-11	59.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0056470	AT4G31580.2	69.000	200	48	3	1	186	1	200	3.02e-71	214
Msa0056470	AT4G31580.1	69.000	200	48	3	1	186	1	200	3.02e-71	214
Msa0056470	AT2G24590.1	72.449	196	44	4	1	186	1	196	1.19e-63	195
Msa0056470	AT1G23860.4	65.476	168	48	4	1	166	1	160	6.13e-46	149
Msa0056470	AT1G23860.1	63.529	170	52	5	1	166	1	164	2.21e-45	148
Msa0056470	AT1G23860.2	63.529	170	52	5	1	166	1	164	2.21e-45	148
Msa0056470	AT1G23860.3	72.222	108	26	1	1	108	1	104	3.38e-44	144
Msa0056470	AT1G60650.2	36.585	123	66	2	2	112	12	134	3.03e-14	69.7
Msa0056470	AT1G60650.1	36.585	123	66	2	2	112	12	134	3.03e-14	69.7
Msa0056470	AT3G53500.2	32.653	245	83	9	2	177	11	242	1.96e-13	67.4

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Find 83 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACGAAATTCATCCTCA+AGG	0.640455	1_2:-12091608	None:intergenic
AACAGGCAAGAATGGTTGGA+GGG	0.663974	1_2:+12093869	Msa0056470:intron
AACGATGTCTCGTGTGTACG+TGG	0.515828	1_2:+12091554	Msa0056470:exon
AAGCAATTACTTAAAATAGA+CGG	0.590512	1_2:-12095292	None:intergenic
AAGTCAATAAAAGCATAGCC+AGG	0.586577	1_2:-12092537	None:intergenic
AATTCTAGAAGTGGTGGTGG+CGG	0.541335	1_2:+12093906	Msa0056470:CDS
ACCAGGAGTTACAGTCCTCG+TGG	0.630825	1_2:+12094493	Msa0056470:intron
ACCTCCTCACGCCCACGGTA+AGG	0.515427	1_2:-12094577	None:intergenic
ACCTCCTTACCGTGGGCGTG+AGG	0.571158	1_2:+12094573	Msa0056470:CDS
ACGATGTCTCGTGTGTACGT+GGG	0.656849	1_2:+12091555	Msa0056470:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAATAGGGTGAAAAATTGA+AGG	-	chr1_2:12091371-12091390	None:intergenic	30.0%
AAAAATAAGCCAATCCAAAC+AGG	-	chr1_2:12091925-12091944	None:intergenic	30.0%
TTGGAATCTTCAATTTCTCA+TGG	+	chr1_2:12092477-12092496	Msa0056470:intron	30.0%
GACTTAAATATGAAGAGTTG+AGG	-	chr1_2:12092751-12092770	None:intergenic	30.0%
ACAATTAACAATGTGAACTG+AGG	+	chr1_2:12092879-12092898	Msa0056470:intron	30.0%
ATGAATCAAACAACATCACA+AGG	-	chr1_2:12093232-12093251	None:intergenic	30.0%
TTCTCATAAATCTAGTCACA+TGG	+	chr1_2:12093788-12093807	Msa0056470:intron	30.0%
TCATTTGTATTCTGTGTAAC+AGG	+	chr1_2:12093852-12093871	Msa0056470:intron	30.0%
CAAGGCTCAAATGAAAATAA+AGG	-	chr1_2:12094118-12094137	None:intergenic	30.0%
CAGAGATAAGCATAATTCTA+AGG	-	chr1_2:12094358-12094377	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	12091255	12095322	12091255	ID=Msa0056470;Name=Msa0056470
chr1_2	mRNA	12091255	12095322	12091255	ID=Msa0056470-mRNA-1;Parent=Msa0056470;Name=Msa0056470-mRNA-1;_AED=0.31;_eAED=0.31;_QI=107\|1\|1\|1\|0.6\|0.66\|6\|225\|186
chr1_2	exon	12091255	12091338	12091255	ID=Msa0056470-mRNA-1:exon:4688;Parent=Msa0056470-mRNA-1
chr1_2	exon	12091535	12091646	12091535	ID=Msa0056470-mRNA-1:exon:4689;Parent=Msa0056470-mRNA-1
chr1_2	exon	12092515	12092603	12092515	ID=Msa0056470-mRNA-1:exon:4690;Parent=Msa0056470-mRNA-1
chr1_2	exon	12093874	12094102	12093874	ID=Msa0056470-mRNA-1:exon:4691;Parent=Msa0056470-mRNA-1
chr1_2	exon	12094498	12094614	12094498	ID=Msa0056470-mRNA-1:exon:4692;Parent=Msa0056470-mRNA-1
chr1_2	exon	12095061	12095322	12095061	ID=Msa0056470-mRNA-1:exon:4693;Parent=Msa0056470-mRNA-1
chr1_2	five_prime_UTR	12091255	12091338	12091255	ID=Msa0056470-mRNA-1:five_prime_utr;Parent=Msa0056470-mRNA-1
chr1_2	five_prime_UTR	12091535	12091557	12091535	ID=Msa0056470-mRNA-1:five_prime_utr;Parent=Msa0056470-mRNA-1
chr1_2	CDS	12091558	12091646	12091558	ID=Msa0056470-mRNA-1:cds;Parent=Msa0056470-mRNA-1
chr1_2	CDS	12092515	12092603	12092515	ID=Msa0056470-mRNA-1:cds;Parent=Msa0056470-mRNA-1
chr1_2	CDS	12093874	12094102	12093874	ID=Msa0056470-mRNA-1:cds;Parent=Msa0056470-mRNA-1
chr1_2	CDS	12094498	12094614	12094498	ID=Msa0056470-mRNA-1:cds;Parent=Msa0056470-mRNA-1
chr1_2	CDS	12095061	12095097	12095061	ID=Msa0056470-mRNA-1:cds;Parent=Msa0056470-mRNA-1
chr1_2	three_prime_UTR	12095098	12095322	12095098	ID=Msa0056470-mRNA-1:three_prime_utr;Parent=Msa0056470-mRNA-1

Gene Sequence

>Msa0056470

ATGTCTCGTGTGTACGTGGGTAATCTGGATTCTAGAGTCTCAGAGAGGGACCTTGAGGATGAATTTCGTGTTTTTGGTGTAATTCGAAGTGTTTGGGTTGCTCGAAGACCACCTGGCTATGCTTTTATTGACTTTGATGACCGCAGAGATGCACAGGATGCTATACGCGATCTAGATGGCAAGAATGGTTGGAGGGTAGAGCTTTCTCACAATTCTAGAAGTGGTGGTGGCGGCGGCGGTGGTGGAGGTCGTGGTCGTGGCGGCGGCGGTTCTGATTTGAAGTGTTATGAGTGTGGTGAACCTGGCCATTTTGCTCGTGAATGTCGCAATCGTGGTGGTGGTGGTGCAGGAAGACGCCGTAGCCGCAGTCCACCTCGATTTCGCAGGAGTCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGTGGGCGGTCCCCCAGGCGCCGCAGCGTGTCACCTCGTGGACGTAGCTACAGCAGGTCACCACCTCCTTACCGTGGGCGTGAGGAGGTGCCATATGCTAATGGAAATGGCATTAGGGACCGACGCCGAAGCAGAAGTTAA

Protein sequence

>Msa0056470

MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRDLDGKNGWRVELSHNSRSGGGGGGGGGRGRGGGGSDLKCYECGEPGHFARECRNRGGGGAGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSVSPRGRSYSRSPPPYRGREEVPYANGNGIRDRRRSRS*