AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0056470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056470 MtrunA17_Chr1g0147821 97.368 190 1 2 1 186 1 190 5.84e-121 339
Msa0056470 MtrunA17_Chr8g0365051 75.135 185 36 6 1 176 1 184 6.71e-68 205
Msa0056470 MtrunA17_Chr3g0139061 77.500 200 30 3 1 186 1 199 2.24e-57 179
Msa0056470 MtrunA17_Chr7g0263341 33.333 222 84 7 2 168 11 223 3.21e-13 66.6
Msa0056470 MtrunA17_Chr7g0269331 43.750 96 41 4 4 92 9 98 2.53e-12 63.9
Msa0056470 MtrunA17_Chr1g0210241 35.433 127 61 4 2 108 7 132 2.62e-11 60.8
Msa0056470 MtrunA17_Chr7g0272311 47.945 73 32 2 4 70 9 81 3.27e-11 60.8
Msa0056470 MtrunA17_Chr3g0127781 46.575 73 33 2 4 70 9 81 4.54e-11 60.1
Msa0056470 MtrunA17_Chr3g0080801 33.077 130 82 1 2 126 68 197 8.14e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056470 AT4G31580.2 69.000 200 48 3 1 186 1 200 3.02e-71 214
Msa0056470 AT4G31580.1 69.000 200 48 3 1 186 1 200 3.02e-71 214
Msa0056470 AT2G24590.1 72.449 196 44 4 1 186 1 196 1.19e-63 195
Msa0056470 AT1G23860.4 65.476 168 48 4 1 166 1 160 6.13e-46 149
Msa0056470 AT1G23860.1 63.529 170 52 5 1 166 1 164 2.21e-45 148
Msa0056470 AT1G23860.2 63.529 170 52 5 1 166 1 164 2.21e-45 148
Msa0056470 AT1G23860.3 72.222 108 26 1 1 108 1 104 3.38e-44 144
Msa0056470 AT1G60650.2 36.585 123 66 2 2 112 12 134 3.03e-14 69.7
Msa0056470 AT1G60650.1 36.585 123 66 2 2 112 12 134 3.03e-14 69.7
Msa0056470 AT3G53500.2 32.653 245 83 9 2 177 11 242 1.96e-13 67.4
Msa0056470 AT1G02840.1 50.000 74 29 3 4 70 9 81 5.88e-13 66.2
Msa0056470 AT1G02840.4 50.000 74 29 3 4 70 9 81 9.35e-13 65.1
Msa0056470 AT1G02840.5 50.000 74 29 3 4 70 9 81 9.35e-13 65.1
Msa0056470 AT1G02840.3 50.000 74 29 3 4 70 9 81 9.35e-13 65.1
Msa0056470 AT1G02840.2 50.000 74 29 3 4 70 9 81 2.41e-12 64.3
Msa0056470 AT4G02430.1 45.455 77 34 3 4 73 9 84 9.73e-12 61.2
Msa0056470 AT2G37340.1 39.450 109 59 3 2 108 11 114 1.37e-11 62.0
Msa0056470 AT4G02430.3 45.455 77 34 3 4 73 9 84 3.88e-11 60.8
Msa0056470 AT4G02430.4 45.455 77 34 3 4 73 9 84 8.60e-11 60.1

Find 83 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGGGAATAGTGAGATTT+TGG 0.237194 1_2:+12095124 Msa0056470:three_prime_UTR
GGTGGTGGCGGCGGCGGTGG+TGG 0.290525 1_2:+12093918 Msa0056470:CDS
AGGTGACACGCTGCGGCGCC+TGG 0.293523 1_2:-12094524 None:intergenic
GGTGGCGGCGGCGGTGGTGG+AGG 0.354991 1_2:+12093921 Msa0056470:CDS
AGTGGTGGTGGCGGCGGCGG+TGG 0.365151 1_2:+12093915 Msa0056470:CDS
GTATATGCAGAAATGGCATT+AGG 0.366155 1_2:+12095051 Msa0056470:intron
TCGTGTGTACGTGGGTAATC+TGG 0.366370 1_2:+12091563 Msa0056470:CDS
TGCGACATTCACGAGCAAAA+TGG 0.370957 1_2:-12094001 None:intergenic
TTCAAAATTAACTTCTGCTT+CGG 0.370967 1_2:-12095082 None:intergenic
TCGTGTTCTCGCCGCTAGCT+AGG 0.390310 1_2:+12091305 Msa0056470:five_prime_UTR
GAGGAGGTGCCATATGCTAA+TGG 0.408138 1_2:+12094592 Msa0056470:CDS
TTCGCAGGAGTCCAAGTTAT+GGG 0.409234 1_2:+12094075 Msa0056470:CDS
AGAAGTGGTGGTGGCGGCGG+CGG 0.411462 1_2:+12093912 Msa0056470:CDS
ATGTTGTGTTTGCAGTGTTT+GGG 0.412023 1_2:+12092500 Msa0056470:intron
TCTAACCTTCGCCCATAACT+TGG 0.420005 1_2:-12094086 None:intergenic
GGAGGTCGTGGTCGTGGCGG+CGG 0.422133 1_2:+12093939 Msa0056470:CDS
TATATGCAGAAATGGCATTA+GGG 0.429730 1_2:+12095052 Msa0056470:intron
CGTGTTCTCGCCGCTAGCTA+GGG 0.437073 1_2:+12091306 Msa0056470:five_prime_UTR
ATCGAGGTGGACTGCGGCTA+CGG 0.452274 1_2:-12094052 None:intergenic
GGTCGTGGTCGTGGCGGCGG+CGG 0.452453 1_2:+12093942 Msa0056470:CDS
GGTGACACGCTGCGGCGCCT+GGG 0.452893 1_2:-12094523 None:intergenic
GGCGGCGGTGGTGGAGGTCG+TGG 0.460146 1_2:+12093927 Msa0056470:CDS
GTGACACGCTGCGGCGCCTG+GGG 0.468230 1_2:-12094522 None:intergenic
TCTAGAAGTGGTGGTGGCGG+CGG 0.468832 1_2:+12093909 Msa0056470:CDS
GGTGGTGGAGGTCGTGGTCG+TGG 0.472836 1_2:+12093933 Msa0056470:CDS
TTTCGCAGGAGTCCAAGTTA+TGG 0.489373 1_2:+12094074 Msa0056470:CDS
AGGAGGTGCCATATGCTAAT+GGG 0.493730 1_2:+12094593 Msa0056470:CDS
CAAGTATTAAGCAAAGATAC+AGG 0.510893 1_2:-12095251 None:intergenic
ATAACTAACCCATTAGCATA+TGG 0.513320 1_2:-12094601 None:intergenic
GATGCTATACGCGATCTAGA+TGG 0.514035 1_2:+12092582 Msa0056470:CDS
TGTTATGAGTGTGGTGAACC+TGG 0.515250 1_2:+12093978 Msa0056470:CDS
ACCTCCTCACGCCCACGGTA+AGG 0.515427 1_2:-12094577 None:intergenic
AACGATGTCTCGTGTGTACG+TGG 0.515828 1_2:+12091554 Msa0056470:exon
ATTAACTTCTGCTTCGGCGT+CGG 0.515869 1_2:-12095076 None:intergenic
GTCAGTGAGAGCAATTATTG+AGG 0.526754 1_2:+12095107 Msa0056470:three_prime_UTR
TGTCGCAATCGTGGTGGTGG+TGG 0.529392 1_2:+12094017 Msa0056470:CDS
TTCTGTGTAACAGGCAAGAA+TGG 0.536794 1_2:+12093861 Msa0056470:intron
AATTCTAGAAGTGGTGGTGG+CGG 0.541335 1_2:+12093906 Msa0056470:CDS
TGATGACCGCAGAGATGCAC+AGG 0.545051 1_2:+12092560 Msa0056470:CDS
TCCTTACCGTGGGCGTGAGG+AGG 0.547639 1_2:+12094576 Msa0056470:CDS
TGGGTTGCTCGAAGACCACC+TGG 0.550517 1_2:+12092519 Msa0056470:CDS
CACAATTCTAGAAGTGGTGG+TGG 0.553562 1_2:+12093903 Msa0056470:CDS
TCACGCCCACGGTAAGGAGG+TGG 0.554871 1_2:-12094571 None:intergenic
TCAGTGAGAGCAATTATTGA+GGG 0.555148 1_2:+12095108 Msa0056470:three_prime_UTR
GTGTAACAGGCAAGAATGGT+TGG 0.559187 1_2:+12093865 Msa0056470:intron
CATTCACGAGCAAAATGGCC+AGG 0.561096 1_2:-12093996 None:intergenic
GAATGTCGCAATCGTGGTGG+TGG 0.564770 1_2:+12094014 Msa0056470:CDS
GCAGTCCACCTCGATTTCGC+AGG 0.566410 1_2:+12094060 Msa0056470:CDS
AGTCTCAGAGAGGGACCTTG+AGG 0.566930 1_2:+12091593 Msa0056470:CDS
CTTTCTCACAATTCTAGAAG+TGG 0.567201 1_2:+12093897 Msa0056470:CDS
ACCTCCTTACCGTGGGCGTG+AGG 0.571158 1_2:+12094573 Msa0056470:CDS
CTCGTGGACGTAGCTACAGC+AGG 0.573406 1_2:+12094545 Msa0056470:CDS
AAGTCAATAAAAGCATAGCC+AGG 0.586577 1_2:-12092537 None:intergenic
GGAGTCCAAGTTATGGGCGA+AGG 0.589847 1_2:+12094081 Msa0056470:CDS
AAGCAATTACTTAAAATAGA+CGG 0.590512 1_2:-12095292 None:intergenic
CGCCGCAGCGTGTCACCTCG+TGG 0.590625 1_2:+12094529 Msa0056470:CDS
CTTGGACTCCTGCGAAATCG+AGG 0.595739 1_2:-12094068 None:intergenic
GATTTGAAGTGTTATGAGTG+TGG 0.598609 1_2:+12093969 Msa0056470:CDS
TCTCACAATTCTAGAAGTGG+TGG 0.600012 1_2:+12093900 Msa0056470:CDS
AGGTCACCACCTCCTTACCG+TGG 0.601922 1_2:+12094565 Msa0056470:CDS
TAACAGGCAAGAATGGTTGG+AGG 0.608447 1_2:+12093868 Msa0056470:intron
GCTCGTGAATGTCGCAATCG+TGG 0.611165 1_2:+12094008 Msa0056470:CDS
CCAATACAACAGTAAAACTC+AGG 0.612424 1_2:-12095194 None:intergenic
GGTGGAGGTCGTGGTCGTGG+CGG 0.619805 1_2:+12093936 Msa0056470:CDS
TCCTCACGCCCACGGTAAGG+AGG 0.623016 1_2:-12094574 None:intergenic
CCAGGAGTTACAGTCCTCGT+GGG 0.630414 1_2:+12094494 Msa0056470:intron
ACCAGGAGTTACAGTCCTCG+TGG 0.630825 1_2:+12094493 Msa0056470:intron
GGTCACCACCTCCTTACCGT+GGG 0.634356 1_2:+12094566 Msa0056470:CDS
ATGGCACCTCCTCACGCCCA+CGG 0.635291 1_2:-12094582 None:intergenic
AAACACGAAATTCATCCTCA+AGG 0.640455 1_2:-12091608 None:intergenic
GGAGTTACAGTCCTCGTGGG+CGG 0.645283 1_2:+12094497 Msa0056470:intron
ACGATGTCTCGTGTGTACGT+GGG 0.656849 1_2:+12091555 Msa0056470:exon
GGATTCTAGAGTCTCAGAGA+GGG 0.661005 1_2:+12091584 Msa0056470:CDS
AACAGGCAAGAATGGTTGGA+GGG 0.663974 1_2:+12093869 Msa0056470:intron
GTCCACGAGGTGACACGCTG+CGG 0.671063 1_2:-12094531 None:intergenic
GGACTCCTGCGAAATCGAGG+TGG 0.673792 1_2:-12094065 None:intergenic
TGACACGCTGCGGCGCCTGG+GGG 0.679479 1_2:-12094521 None:intergenic
TGCGAAATCGAGGTGGACTG+CGG 0.679589 1_2:-12094058 None:intergenic
CTGCTGTAGCTACGTCCACG+AGG 0.684355 1_2:-12094544 None:intergenic
CGTGAATGTCGCAATCGTGG+TGG 0.699969 1_2:+12094011 Msa0056470:CDS
TGGATTCTAGAGTCTCAGAG+AGG 0.702659 1_2:+12091583 Msa0056470:CDS
TCAATAAAAGCATAGCCAGG+TGG 0.704252 1_2:-12092534 None:intergenic
TAGCATCCTGTGCATCTCTG+CGG 0.708826 1_2:-12092566 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGAAGAAAAAAAAAATA+TGG + chr1_2:12091849-12091868 Msa0056470:intron 10.0%
!! AAAAAAAAAATATGGAAATA+GGG + chr1_2:12091857-12091876 Msa0056470:intron 10.0%
!!! ATAAAAATTATGTTTTTGTT+TGG + chr1_2:12092382-12092401 Msa0056470:intron 10.0%
!!! TAAAAATTATGTTTTTGTTT+GGG + chr1_2:12092383-12092402 Msa0056470:intron 10.0%
!! TAAACTAAAAAGAGAAAATT+TGG - chr1_2:12091478-12091497 None:intergenic 15.0%
!! GAAAAAAAAAATATGGAAAT+AGG + chr1_2:12091856-12091875 Msa0056470:intron 15.0%
!!! AATTATGATTAATCTTGTTT+TGG + chr1_2:12092458-12092477 Msa0056470:intron 15.0%
!! AAAATATATGCAACATTAAA+CGG - chr1_2:12093567-12093586 None:intergenic 15.0%
!!! ATAATTTTTAACCTTGAAAA+AGG - chr1_2:12093732-12093751 None:intergenic 15.0%
!!! TTAATGATCATGTTTTATTA+TGG + chr1_2:12094180-12094199 Msa0056470:intron 15.0%
!! ACAAATAAACATTATATAGT+TGG + chr1_2:12094938-12094957 Msa0056470:intron 15.0%
!! TAAAAAGAGAAAATTTGGTT+TGG - chr1_2:12091473-12091492 None:intergenic 20.0%
!!! TAACTTGATTTTTCATGTAA+AGG + chr1_2:12091747-12091766 Msa0056470:intron 20.0%
!! TAAATTGAATTCTCAAAAGT+TGG - chr1_2:12092156-12092175 None:intergenic 20.0%
!! AAACACAAATAAACTATTGT+TGG + chr1_2:12092325-12092344 Msa0056470:intron 20.0%
!! TGGCACTTTAATAATATATA+TGG - chr1_2:12092643-12092662 None:intergenic 20.0%
!! AATAACTTCGGAAAATATTA+TGG + chr1_2:12093077-12093096 Msa0056470:intron 20.0%
!!! TGCTTAATTTTCTTGAAATT+TGG + chr1_2:12093185-12093204 Msa0056470:intron 20.0%
!! TTAATTGAATATAAACGTGT+CGG + chr1_2:12093385-12093404 Msa0056470:intron 20.0%
!! AAATATATGCAACATTAAAC+GGG - chr1_2:12093566-12093585 None:intergenic 20.0%
!! TAGCAAAAAGATTATCATAT+TGG - chr1_2:12093703-12093722 None:intergenic 20.0%
!! AAAATACCACAATAAAACAT+TGG - chr1_2:12094158-12094177 None:intergenic 20.0%
!!! ATTTTTCTTAATGATCATGT+AGG + chr1_2:12094173-12094192 Msa0056470:intron 20.0%
!!! TTTTTCTTAATGATCATGTA+GGG + chr1_2:12094205-12094224 Msa0056470:intron 20.0%
!!! AAAGCATTATTACAAAAAGT+AGG - chr1_2:12094246-12094265 None:intergenic 20.0%
!!! TTTTTGTAATAATGCTTTTG+TGG + chr1_2:12094248-12094267 Msa0056470:intron 20.0%
!!! ATTCTAAGGTATAAAATAGT+AGG - chr1_2:12094344-12094363 None:intergenic 20.0%
!! GCTTAGTATGAAAAATTTAA+GGG - chr1_2:12094632-12094651 None:intergenic 20.0%
!! TGCTTAGTATGAAAAATTTA+AGG - chr1_2:12094633-12094652 None:intergenic 20.0%
!! TAGTTATTATTGTCACTATT+TGG + chr1_2:12094653-12094672 Msa0056470:intron 20.0%
!! AAAATATCACCAAGTTAAAA+TGG + chr1_2:12094791-12094810 Msa0056470:intron 20.0%
!! AAATATCACCAAGTTAAAAT+GGG + chr1_2:12094792-12094811 Msa0056470:intron 20.0%
!! GTAAATATGCTTATTAAGTA+CGG - chr1_2:12094887-12094906 None:intergenic 20.0%
!! CTAATATACAGACATAATAA+AGG - chr1_2:12094909-12094928 None:intergenic 20.0%
!! AATAAACATTATATAGTTGG+AGG + chr1_2:12094941-12094960 Msa0056470:intron 20.0%
!! AAATTAACATAAATCACATG+CGG - chr1_2:12094967-12094986 None:intergenic 20.0%
!! ATTTCTGCATATACATTATT+TGG - chr1_2:12095045-12095064 None:intergenic 20.0%
!! AAATAATGTATATGCAGAAA+TGG + chr1_2:12095044-12095063 Msa0056470:intron 20.0%
!!! AATATGAATCTGTTTTGTTT+GGG + chr1_2:12095165-12095184 Msa0056470:three_prime_UTR 20.0%
!! AAGCAATTACTTAAAATAGA+CGG - chr1_2:12095295-12095314 None:intergenic 20.0%
! ATTATTCATAAAGCTTGTCA+AGG - chr1_2:12092049-12092068 None:intergenic 25.0%
! TCAAAAATAAGTCAATCCAA+AGG + chr1_2:12092110-12092129 Msa0056470:intron 25.0%
!!! GTTGTGTTGATTATTTTTCA+TGG + chr1_2:12092259-12092278 Msa0056470:intron 25.0%
! ATTTATTGAAATCACAGACA+TGG - chr1_2:12092295-12092314 None:intergenic 25.0%
!!! AATAAACTATTGTTGGTTTC+TGG + chr1_2:12092332-12092351 Msa0056470:intron 25.0%
!!! CTGTGTTGATTATTTTTCAT+GGG + chr1_2:12092406-12092425 Msa0056470:intron 25.0%
! TAATGTCATAGTAATATGCA+TGG - chr1_2:12092663-12092682 None:intergenic 25.0%
! GAACTCTTCATATTGAAATA+AGG + chr1_2:12093256-12093275 Msa0056470:intron 25.0%
! TATGTAAGTATTTATCTCAG+AGG + chr1_2:12093445-12093464 Msa0056470:intron 25.0%
! GGTATTAAACAGGTAAATAT+TGG - chr1_2:12093660-12093679 None:intergenic 25.0%
!! AAGATTATCATATTGGTGTT+AGG - chr1_2:12093696-12093715 None:intergenic 25.0%
! AGTATGAAAAATTTAAGGGT+GGG - chr1_2:12094628-12094647 None:intergenic 25.0%
! TAGTATGAAAAATTTAAGGG+TGG - chr1_2:12094629-12094648 None:intergenic 25.0%
! TCGTAAAATAAAATGTTCCT+TGG - chr1_2:12094693-12094712 None:intergenic 25.0%
!!! TTAAAATGGGTAATTTGCTT+TGG + chr1_2:12094805-12094824 Msa0056470:intron 25.0%
!!! TAAAATGGGTAATTTGCTTT+GGG + chr1_2:12094806-12094825 Msa0056470:intron 25.0%
! AGTATGTTCATAAGAAACTT+GGG - chr1_2:12094862-12094881 None:intergenic 25.0%
! AAGTATGTTCATAAGAAACT+TGG - chr1_2:12094863-12094882 None:intergenic 25.0%
! TTCAAAATTAACTTCTGCTT+CGG - chr1_2:12095085-12095104 None:intergenic 25.0%
!!! GAATATGAATCTGTTTTGTT+TGG + chr1_2:12095164-12095183 Msa0056470:three_prime_UTR 25.0%
TGAATAGGGTGAAAAATTGA+AGG - chr1_2:12091371-12091390 None:intergenic 30.0%
AAAAATAAGCCAATCCAAAC+AGG - chr1_2:12091925-12091944 None:intergenic 30.0%
!! GTTGGCATCTTTAAGATTAA+GGG - chr1_2:12092138-12092157 None:intergenic 30.0%
!! AGTTGGCATCTTTAAGATTA+AGG - chr1_2:12092139-12092158 None:intergenic 30.0%
!!! GCTGTGTTGATTATTTTTCA+TGG + chr1_2:12092405-12092424 Msa0056470:intron 30.0%
TTGGAATCTTCAATTTCTCA+TGG + chr1_2:12092477-12092496 Msa0056470:intron 30.0%
GACTTAAATATGAAGAGTTG+AGG - chr1_2:12092751-12092770 None:intergenic 30.0%
ACAATTAACAATGTGAACTG+AGG + chr1_2:12092879-12092898 Msa0056470:intron 30.0%
! GATTGGTGGTTAAATAACTT+CGG + chr1_2:12093065-12093084 Msa0056470:intron 30.0%
ATGAATCAAACAACATCACA+AGG - chr1_2:12093232-12093251 None:intergenic 30.0%
!!! TCATTTTTTCAAAGTATCGC+CGG - chr1_2:12093364-12093383 None:intergenic 30.0%
TTCTCATAAATCTAGTCACA+TGG + chr1_2:12093788-12093807 Msa0056470:intron 30.0%
TCATTTGTATTCTGTGTAAC+AGG + chr1_2:12093852-12093871 Msa0056470:intron 30.0%
CAAGGCTCAAATGAAAATAA+AGG - chr1_2:12094118-12094137 None:intergenic 30.0%
!!! CTTTATTTTCATTTGAGCCT+TGG + chr1_2:12094116-12094135 Msa0056470:intron 30.0%
CAGAGATAAGCATAATTCTA+AGG - chr1_2:12094358-12094377 None:intergenic 30.0%
! TATCCATGTCATTTCTCTTA+TGG + chr1_2:12094387-12094406 Msa0056470:intron 30.0%
TCATTTCTCTTATGGTTGTT+AGG + chr1_2:12094395-12094414 Msa0056470:intron 30.0%
ATAACTAACCCATTAGCATA+TGG - chr1_2:12094604-12094623 None:intergenic 30.0%
!!! GCAAATTACCCATTTTAACT+TGG - chr1_2:12094803-12094822 None:intergenic 30.0%
GTATGTTCATAAGAAACTTG+GGG - chr1_2:12094861-12094880 None:intergenic 30.0%
TATATGCAGAAATGGCATTA+GGG + chr1_2:12095052-12095071 Msa0056470:intron 30.0%
CAAGTATTAAGCAAAGATAC+AGG - chr1_2:12095254-12095273 None:intergenic 30.0%
ACGAAGTTTGGGAATGAATA+GGG - chr1_2:12091385-12091404 None:intergenic 35.0%
AACGAAGTTTGGGAATGAAT+AGG - chr1_2:12091386-12091405 None:intergenic 35.0%
TTCCCACTCTTAAGATTTCT+AGG + chr1_2:12091405-12091424 Msa0056470:intron 35.0%
TCCCACTCTTAAGATTTCTA+GGG + chr1_2:12091406-12091425 Msa0056470:intron 35.0%
! TCCATACTGTTGTGATTTGT+AGG + chr1_2:12091513-12091532 Msa0056470:intron 35.0%
ACCTACAAATCACAACAGTA+TGG - chr1_2:12091517-12091536 None:intergenic 35.0%
AAACACGAAATTCATCCTCA+AGG - chr1_2:12091611-12091630 None:intergenic 35.0%
! GAGGATGAATTTCGTGTTTT+TGG + chr1_2:12091612-12091631 Msa0056470:CDS 35.0%
!!! GTGTTTTTGGTGTAATTCGA+AGG + chr1_2:12091625-12091644 Msa0056470:CDS 35.0%
AAAACATCCACACCATCAAA+AGG - chr1_2:12091890-12091909 None:intergenic 35.0%
! TTTGTTTCTTAGTGCCTGTT+TGG + chr1_2:12091908-12091927 Msa0056470:intron 35.0%
!! TCTGAGAGTTTTATGAGAAG+CGG + chr1_2:12092198-12092217 Msa0056470:intron 35.0%
ATGTTGTGTTTGCAGTGTTT+GGG + chr1_2:12092500-12092519 Msa0056470:intron 35.0%
! AAGTCAATAAAAGCATAGCC+AGG - chr1_2:12092540-12092559 None:intergenic 35.0%
!!! TTGTTTTTTCACCCCTTTTC+CGG + chr1_2:12092705-12092724 Msa0056470:intron 35.0%
TGTCTCTACATGAAGTCAAA+GGG - chr1_2:12092862-12092881 None:intergenic 35.0%
TTGTCTCTACATGAAGTCAA+AGG - chr1_2:12092863-12092882 None:intergenic 35.0%
! TGCTCTGATAAGTTTTCGAT+TGG + chr1_2:12093048-12093067 Msa0056470:intron 35.0%
! TCTGATAAGTTTTCGATTGG+TGG + chr1_2:12093051-12093070 Msa0056470:intron 35.0%
AACATCACAAGGCTATATCA+AGG - chr1_2:12093221-12093240 None:intergenic 35.0%
!! TACTTACATACTCTGAAGCA+CGG - chr1_2:12093435-12093454 None:intergenic 35.0%
AAACGGGTAACAAAAAAGCT+TGG - chr1_2:12093550-12093569 None:intergenic 35.0%
ACATACTGTCTTCAAACTGA+AGG - chr1_2:12093611-12093630 None:intergenic 35.0%
TTTGAAGACAGTATGTTTGC+AGG + chr1_2:12093615-12093634 Msa0056470:intron 35.0%
TTGAAGACAGTATGTTTGCA+GGG + chr1_2:12093616-12093635 Msa0056470:intron 35.0%
!! TGCTAGATGTTCCTTTTTCA+AGG + chr1_2:12093718-12093737 Msa0056470:intron 35.0%
GAAAACGTCAGTATCAAACA+CGG + chr1_2:12093753-12093772 Msa0056470:intron 35.0%
! CTTTCTCACAATTCTAGAAG+TGG + chr1_2:12093897-12093916 Msa0056470:CDS 35.0%
! GATTTGAAGTGTTATGAGTG+TGG + chr1_2:12093969-12093988 Msa0056470:CDS 35.0%
!! TTGGCACCAATGTTTTATTG+TGG + chr1_2:12094149-12094168 Msa0056470:intron 35.0%
CAACCATAAGAGAAATGACA+TGG - chr1_2:12094393-12094412 None:intergenic 35.0%
TTCTCTTATGGTTGTTAGGT+TGG + chr1_2:12094399-12094418 Msa0056470:intron 35.0%
AAATGTTCCTTGGAAAACCA+GGG - chr1_2:12094683-12094702 None:intergenic 35.0%
AAAATGTTCCTTGGAAAACC+AGG - chr1_2:12094684-12094703 None:intergenic 35.0%
GTATATGCAGAAATGGCATT+AGG + chr1_2:12095051-12095070 Msa0056470:intron 35.0%
TCAGTGAGAGCAATTATTGA+GGG + chr1_2:12095108-12095127 Msa0056470:three_prime_UTR 35.0%
! TTGAGGGAATAGTGAGATTT+TGG + chr1_2:12095124-12095143 Msa0056470:three_prime_UTR 35.0%
!! GTGAGATTTTGGTCATTTAG+TGG + chr1_2:12095135-12095154 Msa0056470:three_prime_UTR 35.0%
CCAATACAACAGTAAAACTC+AGG - chr1_2:12095197-12095216 None:intergenic 35.0%
! CCTGAGTTTTACTGTTGTAT+TGG + chr1_2:12095194-12095213 Msa0056470:three_prime_UTR 35.0%
GGTGAAAAATTGAAGGTCGA+AGG - chr1_2:12091364-12091383 None:intergenic 40.0%
AAGAGTGGGAAACGAAGTTT+GGG - chr1_2:12091396-12091415 None:intergenic 40.0%
TAAGAGTGGGAAACGAAGTT+TGG - chr1_2:12091397-12091416 None:intergenic 40.0%
GCCCTAGAAATCTTAAGAGT+GGG - chr1_2:12091410-12091429 None:intergenic 40.0%
AGCCCTAGAAATCTTAAGAG+TGG - chr1_2:12091411-12091430 None:intergenic 40.0%
TTCTTAGTGCCTGTTTGGAT+TGG + chr1_2:12091913-12091932 Msa0056470:intron 40.0%
!! TTTAAGATTAAGGGCGCCTT+TGG - chr1_2:12092129-12092148 None:intergenic 40.0%
!! CTGAGAGTTTTATGAGAAGC+GGG + chr1_2:12092199-12092218 Msa0056470:intron 40.0%
GATGTTGTGTTTGCAGTGTT+TGG + chr1_2:12092499-12092518 Msa0056470:intron 40.0%
! TCAATAAAAGCATAGCCAGG+TGG - chr1_2:12092537-12092556 None:intergenic 40.0%
TGAACATATCGACCGGAAAA+GGG - chr1_2:12092720-12092739 None:intergenic 40.0%
! TTTTCCGGTCGATATGTTCA+CGG + chr1_2:12092720-12092739 Msa0056470:intron 40.0%
GCTACACTTCTCTTGCATAA+CGG + chr1_2:12092933-12092952 Msa0056470:intron 40.0%
TGCTACTGCAATTAACCTGT+CGG + chr1_2:12092975-12092994 Msa0056470:intron 40.0%
GGGACATATATACAGAACAC+AGG - chr1_2:12093015-12093034 None:intergenic 40.0%
TGATATGGATATGTCGACAC+CGG + chr1_2:12093342-12093361 Msa0056470:intron 40.0%
! GAATATAAACGTGTCGGTGT+CGG + chr1_2:12093391-12093410 Msa0056470:intron 40.0%
! AATATAAACGTGTCGGTGTC+GGG + chr1_2:12093392-12093411 Msa0056470:intron 40.0%
TGTCTTCAAACTGAAGGTCT+CGG - chr1_2:12093605-12093624 None:intergenic 40.0%
ACAGTATGTTTGCAGGGTTA+TGG + chr1_2:12093622-12093641 Msa0056470:intron 40.0%
GACACAGCTAGGTATTAAAC+AGG - chr1_2:12093670-12093689 None:intergenic 40.0%
TTCTGTGTAACAGGCAAGAA+TGG + chr1_2:12093861-12093880 Msa0056470:intron 40.0%
! TCTCACAATTCTAGAAGTGG+TGG + chr1_2:12093900-12093919 Msa0056470:CDS 40.0%
! GTCTTTCTTTTGTATGCACC+AGG + chr1_2:12094476-12094495 Msa0056470:intron 40.0%
! TATCTTCTGCCGCTATCTTT+TGG + chr1_2:12094829-12094848 Msa0056470:intron 40.0%
TCATAAGAAACTTGGGGTCT+TGG - chr1_2:12094855-12094874 None:intergenic 40.0%
GTCAGTGAGAGCAATTATTG+AGG + chr1_2:12095107-12095126 Msa0056470:three_prime_UTR 40.0%
CTGAGAAAAACCCTAGCTAG+CGG - chr1_2:12091319-12091338 None:intergenic 45.0%
!! TGGATTCTAGAGTCTCAGAG+AGG + chr1_2:12091583-12091602 Msa0056470:CDS 45.0%
!! GGATTCTAGAGTCTCAGAGA+GGG + chr1_2:12091584-12091603 Msa0056470:CDS 45.0%
GATGCTATACGCGATCTAGA+TGG + chr1_2:12092582-12092601 Msa0056470:CDS 45.0%
GAACATATCGACCGGAAAAG+GGG - chr1_2:12092719-12092738 None:intergenic 45.0%
GTGAACATATCGACCGGAAA+AGG - chr1_2:12092721-12092740 None:intergenic 45.0%
AAAGCCGTGAACATATCGAC+CGG - chr1_2:12092727-12092746 None:intergenic 45.0%
ACTGAGGATTTGCACTGCTT+TGG + chr1_2:12092895-12092914 Msa0056470:intron 45.0%
CTGAGGATTTGCACTGCTTT+GGG + chr1_2:12092896-12092915 Msa0056470:intron 45.0%
TGAGGATTTGCACTGCTTTG+GGG + chr1_2:12092897-12092916 Msa0056470:intron 45.0%
! CAGAGCACAATTTGCTCAGA+GGG - chr1_2:12093035-12093054 None:intergenic 45.0%
! TCAGAGCACAATTTGCTCAG+AGG - chr1_2:12093036-12093055 None:intergenic 45.0%
CACTGGACACAACACTGATA+TGG + chr1_2:12093327-12093346 Msa0056470:intron 45.0%
GTGTTAGGTTTGACACAGCT+AGG - chr1_2:12093681-12093700 None:intergenic 45.0%
GTGTAACAGGCAAGAATGGT+TGG + chr1_2:12093865-12093884 Msa0056470:intron 45.0%
TAACAGGCAAGAATGGTTGG+AGG + chr1_2:12093868-12093887 Msa0056470:intron 45.0%
AACAGGCAAGAATGGTTGGA+GGG + chr1_2:12093869-12093888 Msa0056470:intron 45.0%
! CACAATTCTAGAAGTGGTGG+TGG + chr1_2:12093903-12093922 Msa0056470:CDS 45.0%
!! AATTCTAGAAGTGGTGGTGG+CGG + chr1_2:12093906-12093925 Msa0056470:CDS 45.0%
TGTTATGAGTGTGGTGAACC+TGG + chr1_2:12093978-12093997 Msa0056470:CDS 45.0%
TGCGACATTCACGAGCAAAA+TGG - chr1_2:12094004-12094023 None:intergenic 45.0%
TTTCGCAGGAGTCCAAGTTA+TGG + chr1_2:12094074-12094093 Msa0056470:CDS 45.0%
TTCGCAGGAGTCCAAGTTAT+GGG + chr1_2:12094075-12094094 Msa0056470:CDS 45.0%
TCTAACCTTCGCCCATAACT+TGG - chr1_2:12094089-12094108 None:intergenic 45.0%
GTTATGGGCGAAGGTTAGAT+TGG + chr1_2:12094090-12094109 Msa0056470:intron 45.0%
! GAGCCTTGGTGCAATTGTAT+TGG + chr1_2:12094130-12094149 Msa0056470:intron 45.0%
GTGCCAATACAATTGCACCA+AGG - chr1_2:12094136-12094155 None:intergenic 45.0%
!! AGGAGGTGCCATATGCTAAT+GGG + chr1_2:12094593-12094612 Msa0056470:CDS 45.0%
ATTAACTTCTGCTTCGGCGT+CGG - chr1_2:12095079-12095098 None:intergenic 45.0%
! CGCTAGCTAGGGTTTTTCTC+AGG + chr1_2:12091317-12091336 Msa0056470:five_prime_UTR 50.0%
AACGATGTCTCGTGTGTACG+TGG + chr1_2:12091554-12091573 Msa0056470:exon 50.0%
ACGATGTCTCGTGTGTACGT+GGG + chr1_2:12091555-12091574 Msa0056470:exon 50.0%
TCGTGTGTACGTGGGTAATC+TGG + chr1_2:12091563-12091582 Msa0056470:CDS 50.0%
! TAGGGTCTGCTGCCTTTTGA+TGG + chr1_2:12091875-12091894 Msa0056470:intron 50.0%
!!! TCTGCTGCCTTTTGATGGTG+TGG + chr1_2:12091880-12091899 Msa0056470:intron 50.0%
!! ATGAGAAGCGGGTTAGTGAG+TGG + chr1_2:12092210-12092229 Msa0056470:intron 50.0%
!! TGAGAAGCGGGTTAGTGAGT+GGG + chr1_2:12092211-12092230 Msa0056470:intron 50.0%
TAGCATCCTGTGCATCTCTG+CGG - chr1_2:12092569-12092588 None:intergenic 50.0%
GTGTAAGCTGTTCGCAGACA+TGG + chr1_2:12093303-12093322 Msa0056470:intron 50.0%
CATTCACGAGCAAAATGGCC+AGG - chr1_2:12093999-12094018 None:intergenic 50.0%
!! GAGGAGGTGCCATATGCTAA+TGG + chr1_2:12094592-12094611 Msa0056470:CDS 50.0%
TGTCACTATTTGGACAGCCC+TGG + chr1_2:12094663-12094682 Msa0056470:intron 50.0%
GGGTCTTGGCCAAAAGATAG+CGG - chr1_2:12094841-12094860 None:intergenic 50.0%
AGTCTCAGAGAGGGACCTTG+AGG + chr1_2:12091593-12091612 Msa0056470:CDS 55.0%
TGATGACCGCAGAGATGCAC+AGG + chr1_2:12092560-12092579 Msa0056470:CDS 55.0%
TGCAAGCAGCTCTGCAGTAG+TGG + chr1_2:12092798-12092817 Msa0056470:intron 55.0%
GAACACAGGCAGCACTCACA+TGG - chr1_2:12093001-12093020 None:intergenic 55.0%
CTGTTCGCAGACATGGACAC+TGG + chr1_2:12093310-12093329 Msa0056470:intron 55.0%
! GCACGGACACCTCTAGGAAT+AGG - chr1_2:12093418-12093437 None:intergenic 55.0%
! TCTGAAGCACGGACACCTCT+AGG - chr1_2:12093424-12093443 None:intergenic 55.0%
GCTCGTGAATGTCGCAATCG+TGG + chr1_2:12094008-12094027 Msa0056470:CDS 55.0%
CGTGAATGTCGCAATCGTGG+TGG + chr1_2:12094011-12094030 Msa0056470:CDS 55.0%
GAATGTCGCAATCGTGGTGG+TGG + chr1_2:12094014-12094033 Msa0056470:CDS 55.0%
!! TGCGAAATCGAGGTGGACTG+CGG - chr1_2:12094061-12094080 None:intergenic 55.0%
CTTGGACTCCTGCGAAATCG+AGG - chr1_2:12094071-12094090 None:intergenic 55.0%
GGAGTCCAAGTTATGGGCGA+AGG + chr1_2:12094081-12094100 Msa0056470:CDS 55.0%
ACCAGGAGTTACAGTCCTCG+TGG + chr1_2:12094493-12094512 Msa0056470:intron 55.0%
CCAGGAGTTACAGTCCTCGT+GGG + chr1_2:12094494-12094513 Msa0056470:intron 55.0%
!! TGGACAGCCCTGGTTTTCCA+AGG + chr1_2:12094673-12094692 Msa0056470:intron 55.0%
TCGTGTTCTCGCCGCTAGCT+AGG + chr1_2:12091305-12091324 Msa0056470:five_prime_UTR 60.0%
CGTGTTCTCGCCGCTAGCTA+GGG + chr1_2:12091306-12091325 Msa0056470:five_prime_UTR 60.0%
TGGGTTGCTCGAAGACCACC+TGG + chr1_2:12092519-12092538 Msa0056470:CDS 60.0%
! GGTGTCGGGCCTATTCCTAG+AGG + chr1_2:12093406-12093425 Msa0056470:intron 60.0%
!! TCTAGAAGTGGTGGTGGCGG+CGG + chr1_2:12093909-12093928 Msa0056470:CDS 60.0%
!! TGTCGCAATCGTGGTGGTGG+TGG + chr1_2:12094017-12094036 Msa0056470:CDS 60.0%
!! AATCGTGGTGGTGGTGGTGC+AGG + chr1_2:12094023-12094042 Msa0056470:CDS 60.0%
!! ATCGAGGTGGACTGCGGCTA+CGG - chr1_2:12094055-12094074 None:intergenic 60.0%
GCAGTCCACCTCGATTTCGC+AGG + chr1_2:12094060-12094079 Msa0056470:CDS 60.0%
GGACTCCTGCGAAATCGAGG+TGG - chr1_2:12094068-12094087 None:intergenic 60.0%
CCCACGAGGACTGTAACTCC+TGG - chr1_2:12094497-12094516 None:intergenic 60.0%
GGAGTTACAGTCCTCGTGGG+CGG + chr1_2:12094497-12094516 Msa0056470:intron 60.0%
CTGCTGTAGCTACGTCCACG+AGG - chr1_2:12094547-12094566 None:intergenic 60.0%
CTCGTGGACGTAGCTACAGC+AGG + chr1_2:12094545-12094564 Msa0056470:CDS 60.0%
AGGTCACCACCTCCTTACCG+TGG + chr1_2:12094565-12094584 Msa0056470:CDS 60.0%
GGTCACCACCTCCTTACCGT+GGG + chr1_2:12094566-12094585 Msa0056470:CDS 60.0%
GCAGCACTCACATGGCCGAC+AGG - chr1_2:12092993-12093012 None:intergenic 65.0%
GTCCACGAGGTGACACGCTG+CGG - chr1_2:12094534-12094553 None:intergenic 65.0%
TCACGCCCACGGTAAGGAGG+TGG - chr1_2:12094574-12094593 None:intergenic 65.0%
ACCTCCTTACCGTGGGCGTG+AGG + chr1_2:12094573-12094592 Msa0056470:CDS 65.0%
TCCTCACGCCCACGGTAAGG+AGG - chr1_2:12094577-12094596 None:intergenic 65.0%
TCCTTACCGTGGGCGTGAGG+AGG + chr1_2:12094576-12094595 Msa0056470:CDS 65.0%
ACCTCCTCACGCCCACGGTA+AGG - chr1_2:12094580-12094599 None:intergenic 65.0%
ATGGCACCTCCTCACGCCCA+CGG - chr1_2:12094585-12094604 None:intergenic 65.0%
!! AGAAGTGGTGGTGGCGGCGG+CGG + chr1_2:12093912-12093931 Msa0056470:CDS 70.0%
!! GGTGGTGGAGGTCGTGGTCG+TGG + chr1_2:12093933-12093952 Msa0056470:CDS 70.0%
GGTGGAGGTCGTGGTCGTGG+CGG + chr1_2:12093936-12093955 Msa0056470:CDS 70.0%
GGAGGTCGTGGTCGTGGCGG+CGG + chr1_2:12093939-12093958 Msa0056470:CDS 75.0%
TGACACGCTGCGGCGCCTGG+GGG - chr1_2:12094524-12094543 None:intergenic 75.0%
GTGACACGCTGCGGCGCCTG+GGG - chr1_2:12094525-12094544 None:intergenic 75.0%
GGTGACACGCTGCGGCGCCT+GGG - chr1_2:12094526-12094545 None:intergenic 75.0%
AGGTGACACGCTGCGGCGCC+TGG - chr1_2:12094527-12094546 None:intergenic 75.0%
CGCCGCAGCGTGTCACCTCG+TGG + chr1_2:12094529-12094548 Msa0056470:CDS 75.0%
!!! AGTGGTGGTGGCGGCGGCGG+TGG + chr1_2:12093915-12093934 Msa0056470:CDS 80.0%
!!! GGCGGCGGTGGTGGAGGTCG+TGG + chr1_2:12093927-12093946 Msa0056470:CDS 80.0%
! GGTCGTGGTCGTGGCGGCGG+CGG + chr1_2:12093942-12093961 Msa0056470:CDS 80.0%
! GTCCTCGTGGGCGGTCCCCC+AGG + chr1_2:12094506-12094525 Msa0056470:CDS 80.0%
!!! GGTGGTGGCGGCGGCGGTGG+TGG + chr1_2:12093918-12093937 Msa0056470:CDS 85.0%
!! GGTGGCGGCGGCGGTGGTGG+AGG + chr1_2:12093921-12093940 Msa0056470:CDS 85.0%
! CGCCTGGGGGACCGCCCACG+AGG - chr1_2:12094511-12094530 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 12091255 12095322 12091255 ID=Msa0056470;Name=Msa0056470
chr1_2 mRNA 12091255 12095322 12091255 ID=Msa0056470-mRNA-1;Parent=Msa0056470;Name=Msa0056470-mRNA-1;_AED=0.31;_eAED=0.31;_QI=107|1|1|1|0.6|0.66|6|225|186
chr1_2 exon 12091255 12091338 12091255 ID=Msa0056470-mRNA-1:exon:4688;Parent=Msa0056470-mRNA-1
chr1_2 exon 12091535 12091646 12091535 ID=Msa0056470-mRNA-1:exon:4689;Parent=Msa0056470-mRNA-1
chr1_2 exon 12092515 12092603 12092515 ID=Msa0056470-mRNA-1:exon:4690;Parent=Msa0056470-mRNA-1
chr1_2 exon 12093874 12094102 12093874 ID=Msa0056470-mRNA-1:exon:4691;Parent=Msa0056470-mRNA-1
chr1_2 exon 12094498 12094614 12094498 ID=Msa0056470-mRNA-1:exon:4692;Parent=Msa0056470-mRNA-1
chr1_2 exon 12095061 12095322 12095061 ID=Msa0056470-mRNA-1:exon:4693;Parent=Msa0056470-mRNA-1
chr1_2 five_prime_UTR 12091255 12091338 12091255 ID=Msa0056470-mRNA-1:five_prime_utr;Parent=Msa0056470-mRNA-1
chr1_2 five_prime_UTR 12091535 12091557 12091535 ID=Msa0056470-mRNA-1:five_prime_utr;Parent=Msa0056470-mRNA-1
chr1_2 CDS 12091558 12091646 12091558 ID=Msa0056470-mRNA-1:cds;Parent=Msa0056470-mRNA-1
chr1_2 CDS 12092515 12092603 12092515 ID=Msa0056470-mRNA-1:cds;Parent=Msa0056470-mRNA-1
chr1_2 CDS 12093874 12094102 12093874 ID=Msa0056470-mRNA-1:cds;Parent=Msa0056470-mRNA-1
chr1_2 CDS 12094498 12094614 12094498 ID=Msa0056470-mRNA-1:cds;Parent=Msa0056470-mRNA-1
chr1_2 CDS 12095061 12095097 12095061 ID=Msa0056470-mRNA-1:cds;Parent=Msa0056470-mRNA-1
chr1_2 three_prime_UTR 12095098 12095322 12095098 ID=Msa0056470-mRNA-1:three_prime_utr;Parent=Msa0056470-mRNA-1
Gene Sequence

>Msa0056470

ATGTCTCGTGTGTACGTGGGTAATCTGGATTCTAGAGTCTCAGAGAGGGACCTTGAGGATGAATTTCGTGTTTTTGGTGTAATTCGAAGTGTTTGGGTTGCTCGAAGACCACCTGGCTATGCTTTTATTGACTTTGATGACCGCAGAGATGCACAGGATGCTATACGCGATCTAGATGGCAAGAATGGTTGGAGGGTAGAGCTTTCTCACAATTCTAGAAGTGGTGGTGGCGGCGGCGGTGGTGGAGGTCGTGGTCGTGGCGGCGGCGGTTCTGATTTGAAGTGTTATGAGTGTGGTGAACCTGGCCATTTTGCTCGTGAATGTCGCAATCGTGGTGGTGGTGGTGCAGGAAGACGCCGTAGCCGCAGTCCACCTCGATTTCGCAGGAGTCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGTGGGCGGTCCCCCAGGCGCCGCAGCGTGTCACCTCGTGGACGTAGCTACAGCAGGTCACCACCTCCTTACCGTGGGCGTGAGGAGGTGCCATATGCTAATGGAAATGGCATTAGGGACCGACGCCGAAGCAGAAGTTAA

Protein sequence

>Msa0056470

MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRDLDGKNGWRVELSHNSRSGGGGGGGGGRGRGGGGSDLKCYECGEPGHFARECRNRGGGGAGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSVSPRGRSYSRSPPPYRGREEVPYANGNGIRDRRRSRS*