Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388160 | XP_039683558.1 | 78.431 | 51 | 11 | 0 | 3 | 53 | 139 | 189 | 1.08e-16 | 83.2 |
| Msa1388160 | XP_039683558.1 | 78.750 | 80 | 17 | 0 | 59 | 138 | 113 | 192 | 1.94e-30 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388160 | A0A396H1H4 | 78.431 | 51 | 11 | 0 | 3 | 53 | 139 | 189 | 5.17e-17 | 83.2 |
| Msa1388160 | A0A396H1H4 | 78.750 | 80 | 17 | 0 | 59 | 138 | 113 | 192 | 9.27e-31 | 118 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031520 | Msa1388160 | 0.830453 | 2.911987e-55 | -8.615850e-47 |
| Msa1350680 | Msa1388160 | 0.817824 | 2.698436e-52 | -8.615850e-47 |
| Msa1366970 | Msa1388160 | 0.901536 | 2.426166e-78 | -8.615850e-47 |
| Msa1388160 | Msa1455280 | 0.808948 | 2.409526e-50 | -8.615850e-47 |
| Msa0602980 | Msa1388160 | 0.813250 | 2.815638e-51 | -8.615850e-47 |
| Msa0804810 | Msa1388160 | 0.821452 | 4.007708e-53 | -8.615850e-47 |
| Msa0832040 | Msa1388160 | 0.802463 | 5.542865e-49 | -8.615850e-47 |
| Msa0234270 | Msa1388160 | 0.813557 | 2.409664e-51 | -8.615850e-47 |
| Msa0394280 | Msa1388160 | 0.802721 | 4.904550e-49 | -8.615850e-47 |
| Msa1013360 | Msa1388160 | 0.834742 | 2.513570e-56 | -8.615850e-47 |
| Msa1020100 | Msa1388160 | 0.804649 | 1.951902e-49 | -8.615850e-47 |
| Msa1059310 | Msa1388160 | 0.803974 | 2.697585e-49 | -8.615850e-47 |
| Msa1099960 | Msa1388160 | 0.817055 | 4.020974e-52 | -8.615850e-47 |
| Msa1119930 | Msa1388160 | 0.808282 | 3.343783e-50 | -8.615850e-47 |
| Msa0518950 | Msa1388160 | 0.801799 | 7.594197e-49 | -8.615850e-47 |
| Msa0844420 | Msa1388160 | 0.806524 | 7.888451e-50 | -8.615850e-47 |
| Msa0948320 | Msa1388160 | 0.800044 | 1.733120e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388160 | MtrunA17_Chr7g0225251 | 78.750 | 80 | 17 | 0 | 59 | 138 | 113 | 192 | 1.79e-34 | 118 |
| Msa1388160 | MtrunA17_Chr7g0225251 | 78.431 | 51 | 11 | 0 | 3 | 53 | 139 | 189 | 9.96e-21 | 83.2 |
| Msa1388160 | MtrunA17_Chr7g0225371 | 78.750 | 80 | 17 | 0 | 59 | 138 | 174 | 253 | 7.33e-34 | 118 |
| Msa1388160 | MtrunA17_Chr7g0225371 | 83.333 | 48 | 8 | 0 | 3 | 50 | 200 | 247 | 3.13e-20 | 83.2 |
| Msa1388160 | MtrunA17_Chr7g0225341 | 80.556 | 72 | 13 | 1 | 59 | 130 | 47 | 117 | 1.40e-32 | 111 |
| Msa1388160 | MtrunA17_Chr7g0225341 | 84.783 | 46 | 6 | 1 | 3 | 48 | 73 | 117 | 5.97e-18 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCCTTCCTCTATTAGTTT+TGG | 0.291440 | tig0021036:-109279 | Msa1388160:CDS |
| TCTCATAAGGAGGATGCTTC+AGG | 0.377294 | tig0021036:-103814 | Msa1388160:CDS |
| ACTCCTTCGTCTATTAGCTT+TGG | 0.380513 | tig0021036:-103718 | Msa1388160:CDS |
| TGCTAAAACAAGGTCTTCTA+TGG | 0.383482 | tig0021036:+103768 | Msa1388160:intergenic |
| ATGACATGCCTTTGGTCTTA+CGG | 0.396546 | tig0021036:+109253 | Msa1388160:intergenic |
| ATGACATGCCTTTGGTGTTA+CGG | 0.399250 | tig0021036:+103692 | Msa1388160:intergenic |
| AGGGACAAATGACATGCCTT+TGG | 0.452208 | tig0021036:+109245 | Msa1388160:intergenic |
| AGGGACAAATGACATGCCTT+TGG | 0.478422 | tig0021036:+103684 | Msa1388160:intergenic |
| CGAGCTGTTCAGTGTGGAAA+GGG | 0.479849 | tig0021036:-103661 | Msa1388160:CDS |
| AGGTGACAATCTCTTCATCA+TGG | 0.487578 | tig0021036:-104018 | Msa1388160:intron |
| TTCCCGTGCTGAACAGCTCG+AGG | 0.506628 | tig0021036:+109225 | Msa1388160:intergenic |
| ACGGCGACCAAAACTAATAG+AGG | 0.515010 | tig0021036:+109272 | Msa1388160:intergenic |
| TCCCTCGAGCTGTTCAGCAC+GGG | 0.517194 | tig0021036:-109227 | Msa1388160:CDS |
| AGTCTCTAGAATGAATACTT+TGG | 0.538746 | tig0021036:-109307 | Msa1388160:CDS |
| GTGTGGAAAGGGATCAAACT+CGG | 0.545538 | tig0021036:-103650 | Msa1388160:CDS |
| GCACGGGAAGGGATCAAACT+CGG | 0.552569 | tig0021036:-109211 | Msa1388160:CDS |
| CGAGCTGTTCAGCACGGGAA+GGG | 0.557232 | tig0021036:-109222 | Msa1388160:CDS |
| GTCCCTCGAGCTGTTCAGCA+CGG | 0.560048 | tig0021036:-109228 | Msa1388160:CDS |
| TCGAGCTGTTCAGCACGGGA+AGG | 0.576120 | tig0021036:-109223 | Msa1388160:CDS |
| TTCTAGAGACTGCTGAAACA+AGG | 0.576385 | tig0021036:+109319 | Msa1388160:intergenic |
| CACGGGAAGGGATCAAACTC+GGG | 0.578010 | tig0021036:-109210 | Msa1388160:intron |
| TCGAGCTGTTCAGTGTGGAA+AGG | 0.580780 | tig0021036:-103662 | Msa1388160:CDS |
| AGTCTCTAGAGTGAATACTT+TGG | 0.586283 | tig0021036:-103746 | Msa1388160:CDS |
| TTTGGTTGCCGTAACACCAA+AGG | 0.586816 | tig0021036:-103700 | Msa1388160:CDS |
| TTTGGTCGCCGTAAGACCAA+AGG | 0.589821 | tig0021036:-109261 | Msa1388160:CDS |
| CTCTAGAGACTGCTAAAACA+AGG | 0.590843 | tig0021036:+103758 | Msa1388160:intergenic |
| TCCCGTGCTGAACAGCTCGA+GGG | 0.596541 | tig0021036:+109226 | Msa1388160:intergenic |
| TGCTTCAGGAATGAATGAAG+TGG | 0.597871 | tig0021036:-103800 | Msa1388160:CDS |
| TTTCCACACTGAACAGCTCG+AGG | 0.606690 | tig0021036:+103664 | Msa1388160:intergenic |
| TGTGGAAAGGGATCAAACTC+GGG | 0.608253 | tig0021036:-103649 | Msa1388160:CDS |
| CGACCAAAACTAATAGAGGA+AGG | 0.620183 | tig0021036:+109276 | Msa1388160:intergenic |
| CTCTGCTTTCAAAGAAACTG+AGG | 0.633947 | tig0021036:-103861 | Msa1388160:intron |
| TGCTGAAACAAGGTTATCTG+TGG | 0.642298 | tig0021036:+109329 | Msa1388160:intergenic |
| TTCCACACTGAACAGCTCGA+GGG | 0.645561 | tig0021036:+103665 | Msa1388160:intergenic |
| GTCCCTCGAGCTGTTCAGTG+TGG | 0.654976 | tig0021036:-103667 | Msa1388160:CDS |
| CAACCAAAGCTAATAGACGA+AGG | 0.701927 | tig0021036:+103715 | Msa1388150:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAAATTAAAAAAATA+CGG | + | tig0021036:105213-105232 | Msa1388160:intergenic | 0.0% |
| !!! | ATTAATTTTATTTTTTTATT+GGG | + | tig0021036:105291-105310 | Msa1388160:intergenic | 0.0% |
| !!! | AATTAATTTTATTTTTTTAT+TGG | + | tig0021036:105292-105311 | Msa1388160:intergenic | 0.0% |
| !!! | TGAATATTTAATTTTTTTAG+GGG | + | tig0021036:104252-104271 | Msa1388160:intergenic | 10.0% |
| !! | TAAAAAAATGATTTACATAA+GGG | - | tig0021036:104611-104630 | Msa1388160:intron | 10.0% |
| !! | ATCTAAAAAAAAAATTTACA+GGG | + | tig0021036:104685-104704 | Msa1388160:intergenic | 10.0% |
| !! | AATCTAAAAAAAAAATTTAC+AGG | + | tig0021036:104686-104705 | Msa1388160:intergenic | 10.0% |
| !!! | GAAAAATTTTGAATTTTTTT+TGG | + | tig0021036:104948-104967 | Msa1388160:intergenic | 10.0% |
| !! | TGGAAAAAATTTAAAAAATA+CGG | + | tig0021036:105175-105194 | Msa1388160:intergenic | 10.0% |
| !!! | GATAAATCATTTTATTATTA+TGG | + | tig0021036:105912-105931 | Msa1388160:intergenic | 10.0% |
| !! | ATATTACACTAATATATTTA+GGG | + | tig0021036:107873-107892 | Msa1388160:intergenic | 10.0% |
| !! | AATATTACACTAATATATTT+AGG | + | tig0021036:107874-107893 | Msa1388160:intergenic | 10.0% |
| !!! | TTTATTTTATAAGGTTACTT+TGG | + | tig0021036:104208-104227 | Msa1388160:intergenic | 15.0% |
| !! | GTAAAAAAATGATTTACATA+AGG | - | tig0021036:104610-104629 | Msa1388160:intron | 15.0% |
| !! | TCTAAAAAAAAAATTTACAG+GGG | + | tig0021036:104684-104703 | Msa1388160:intergenic | 15.0% |
| !!! | TTTTTTTATTTTAAATGACG+TGG | + | tig0021036:104841-104860 | Msa1388160:intergenic | 15.0% |
| !!! | TTTTATTATTATGGTCAATT+TGG | + | tig0021036:105903-105922 | Msa1388160:intergenic | 15.0% |
| !! | TAAAAAGAAAAAATCAAACA+TGG | - | tig0021036:106288-106307 | Msa1388160:intron | 15.0% |
| !! | AGATCAAAATGAAAAATATT+GGG | - | tig0021036:107251-107270 | Msa1388160:intron | 15.0% |
| !! | ACTTAATATATATCATTGAA+TGG | - | tig0021036:108240-108259 | Msa1388160:intron | 15.0% |
| !! | CTTAATATATATCATTGAAT+GGG | - | tig0021036:108241-108260 | Msa1388160:intron | 15.0% |
| !!! | TTCTGTTATTTTTTACAATT+CGG | - | tig0021036:108681-108700 | Msa1388160:intron | 15.0% |
| !! | AAAAAGATACACAAAATTAA+AGG | - | tig0021036:108731-108750 | Msa1388160:intron | 15.0% |
| !!! | AAATATGAAATCTCTTTTTT+AGG | - | tig0021036:108922-108941 | Msa1388160:intron | 15.0% |
| !!! | ATGCTACGTTTTATTTTATA+AGG | + | tig0021036:104217-104236 | Msa1388160:intergenic | 20.0% |
| !! | AAAAAATACGGAAAAAATTC+TGG | + | tig0021036:105163-105182 | Msa1388160:intergenic | 20.0% |
| !!! | TACGGAAAAATTTAAAATTC+TGG | + | tig0021036:105195-105214 | Msa1388160:intergenic | 20.0% |
| !!! | CTACAAAAAAATTTTTACAG+AGG | - | tig0021036:105441-105460 | Msa1388160:intron | 20.0% |
| !! | TTGGAACTATATTATGTAAA+GGG | + | tig0021036:105514-105533 | Msa1388160:intergenic | 20.0% |
| !!! | TTTGGAACTATATTATGTAA+AGG | + | tig0021036:105515-105534 | Msa1388160:intergenic | 20.0% |
| !!! | TTTAAGGTTAAATTTTGGTT+TGG | + | tig0021036:105533-105552 | Msa1388160:intergenic | 20.0% |
| !!! | AGTAGTTTAAGGTTAAATTT+TGG | + | tig0021036:105538-105557 | Msa1388160:intergenic | 20.0% |
| !! | TCATTATCATTAAAAACGTT+TGG | - | tig0021036:106241-106260 | Msa1388160:intron | 20.0% |
| !! | GAGATCAAAATGAAAAATAT+TGG | - | tig0021036:107250-107269 | Msa1388160:intron | 20.0% |
| !!! | TAAAGAGGTATTCTAATATT+AGG | - | tig0021036:107464-107483 | Msa1388160:intron | 20.0% |
| !!! | TTCCAATGTTATTTAATGTT+AGG | - | tig0021036:108182-108201 | Msa1388160:intron | 20.0% |
| !! | TACCTAACATTAAATAACAT+TGG | + | tig0021036:108187-108206 | Msa1388160:intergenic | 20.0% |
| !! | TAATTGAAGAATTAACTAGT+TGG | - | tig0021036:108501-108520 | Msa1388160:intron | 20.0% |
| !! | AATTGAAGAATTAACTAGTT+GGG | - | tig0021036:108502-108521 | Msa1388160:intron | 20.0% |
| !! | AGCATGTTATCTTTTTGTAA+CGG | + | tig0021036:103781-103800 | Msa1388160:intergenic | 25.0% |
| ! | CATCAACATAATTCTACTTA+CGG | + | tig0021036:103901-103920 | Msa1388160:intergenic | 25.0% |
| ! | CTATTCATAACATATTACAG+AGG | + | tig0021036:104118-104137 | Msa1388160:intergenic | 25.0% |
| !! | GTTTTTGAATGAGTTAAGTT+TGG | + | tig0021036:104155-104174 | Msa1388160:intergenic | 25.0% |
| ! | ATTTATAGAAGAGAAATGCT+AGG | - | tig0021036:104277-104296 | Msa1388160:intron | 25.0% |
| ! | TTTATAGAAGAGAAATGCTA+GGG | - | tig0021036:104278-104297 | Msa1388160:intron | 25.0% |
| ! | CAAATTTGACGAAATTAAAG+TGG | - | tig0021036:104379-104398 | Msa1388160:intron | 25.0% |
| !!! | GAAGAATCTTCATTTTTCAA+GGG | + | tig0021036:105412-105431 | Msa1388160:intergenic | 25.0% |
| !!! | TGAAGAATCTTCATTTTTCA+AGG | + | tig0021036:105411-105430 | Msa1388160:intergenic | 25.0% |
| ! | TTGAAAAATGAAGATTCTTC+AGG | - | tig0021036:104712-104731 | Msa1388160:intron | 25.0% |
| ! | TTGAAAAATGAAGATTCTTC+AGG | + | tig0021036:104712-104731 | Msa1388160:intergenic | 25.0% |
| !!! | TGAAGAATCTTCATTTTTCA+AGG | - | tig0021036:105411-105430 | Msa1388160:intron | 25.0% |
| !!! | GAAGAATCTTCATTTTTCAA+GGG | - | tig0021036:105412-105431 | Msa1388160:intron | 25.0% |
| ! | TCTTCAAAAGAAGTAGTTTA+AGG | + | tig0021036:105549-105568 | Msa1388160:intergenic | 25.0% |
| !!! | CTTCTTTTGAAGAAACATAA+AGG | - | tig0021036:105556-105575 | Msa1388160:intron | 25.0% |
| !! | TGCACAATCAAAAACTATTT+TGG | + | tig0021036:105610-105629 | Msa1388160:intergenic | 25.0% |
| ! | ACTAATCAATTACATGTCTA+TGG | - | tig0021036:105876-105895 | Msa1388160:intron | 25.0% |
| ! | ACCATATACAGAAATTCTAA+CGG | + | tig0021036:106113-106132 | Msa1388160:intergenic | 25.0% |
| ! | AAAGAAAAAATCAAACATGG+TGG | - | tig0021036:106291-106310 | Msa1388160:intron | 25.0% |
| !!! | GGTATTGATATCTTTAATGT+TGG | + | tig0021036:106983-107002 | Msa1388160:intergenic | 25.0% |
| !!! | TTCTATTTTTGTAATCTGAG+AGG | + | tig0021036:107026-107045 | Msa1388160:intergenic | 25.0% |
| ! | AGAAAATTCTGATTCTTTGT+CGG | - | tig0021036:107285-107304 | Msa1388160:intron | 25.0% |
| ! | AATAGAGAGACTTTAATTGA+GGG | + | tig0021036:107324-107343 | Msa1388160:intergenic | 25.0% |
| ! | AAATAGAGAGACTTTAATTG+AGG | + | tig0021036:107325-107344 | Msa1388160:intergenic | 25.0% |
| ! | TCAATTAAAGTCTCTCTATT+TGG | - | tig0021036:107324-107343 | Msa1388160:intron | 25.0% |
| ! | ATTCCTTCAAAAATTTCCTA+TGG | + | tig0021036:107986-108005 | Msa1388160:intergenic | 25.0% |
| !! | AAAGAAAGAATCATTAGCTT+TGG | + | tig0021036:108361-108380 | Msa1388160:intergenic | 25.0% |
| ! | AATAGAGAACTACTTTAGTA+AGG | + | tig0021036:108586-108605 | Msa1388160:intergenic | 25.0% |
| ! | GTTGTTTATAGCTCATAATT+GGG | - | tig0021036:108703-108722 | Msa1388160:intron | 25.0% |
| ! | TCCAATAGTTAAGAATGATT+TGG | - | tig0021036:108757-108776 | Msa1388160:intron | 25.0% |
| ! | TCCAAATCATTCTTAACTAT+TGG | + | tig0021036:108761-108780 | Msa1388160:intergenic | 25.0% |
| ! | TTGTTATAGATAACCAATGA+TGG | - | tig0021036:108794-108813 | Msa1388160:intron | 25.0% |
| ! | AATCATAATATCACCATCAT+TGG | + | tig0021036:108810-108829 | Msa1388160:intergenic | 25.0% |
| !! | AGTCTCTAGAATGAATACTT+TGG | - | tig0021036:103653-103672 | Msa1388160:CDS | 30.0% |
| !! | GTTTGCTGAATGATCATTTT+CGG | - | tig0021036:103825-103844 | Msa1388160:CDS | 30.0% |
| TTGAATGAGTTAAGTTTGGT+TGG | + | tig0021036:104151-104170 | Msa1388160:intergenic | 30.0% | |
| ! | ATAAGGGTTAATAGTGCTTT+TGG | - | tig0021036:104627-104646 | Msa1388160:intron | 30.0% |
| ! | AAAAGTGCACTATATTACAG+GGG | + | tig0021036:104653-104672 | Msa1388160:intergenic | 30.0% |
| ! | CAAAAGTGCACTATATTACA+GGG | + | tig0021036:104654-104673 | Msa1388160:intergenic | 30.0% |
| AAATGAAGATTCTTCAGGAT+TGG | - | tig0021036:104717-104736 | Msa1388160:intron | 30.0% | |
| !! | GGAATTTTGATACATTGACA+CGG | + | tig0021036:105589-105608 | Msa1388160:intergenic | 30.0% |
| TCCGTTAGAATTTCTGTATA+TGG | - | tig0021036:106109-106128 | Msa1388160:intron | 30.0% | |
| GTTAGAATTTCTGTATATGG+TGG | - | tig0021036:106112-106131 | Msa1388160:intron | 30.0% | |
| GACATCGTTTAATTGAAAAG+CGG | - | tig0021036:106142-106161 | Msa1388160:intron | 30.0% | |
| TGGAAAATCAAGATTCAAGA+CGG | + | tig0021036:106192-106211 | Msa1388160:intergenic | 30.0% | |
| TTCAAGACAGTAAAAGGTTA+GGG | + | tig0021036:106395-106414 | Msa1388160:intergenic | 30.0% | |
| ATTCAAGACAGTAAAAGGTT+AGG | + | tig0021036:106396-106415 | Msa1388160:intergenic | 30.0% | |
| AAACGATTCAAGACAGTAAA+AGG | + | tig0021036:106401-106420 | Msa1388160:intergenic | 30.0% | |
| ! | GAAATTAGGGTTTAGAGTTA+GGG | + | tig0021036:106494-106513 | Msa1388160:intergenic | 30.0% |
| ! | TGAAATTAGGGTTTAGAGTT+AGG | + | tig0021036:106495-106514 | Msa1388160:intergenic | 30.0% |
| TACGAAATCATCACAACAAA+TGG | - | tig0021036:106556-106575 | Msa1388160:intron | 30.0% | |
| AGATTTACCTGATGAATGTT+GGG | - | tig0021036:106586-106605 | Msa1388160:intron | 30.0% | |
| ATCGTTAACGAAGACAAAAA+CGG | - | tig0021036:106626-106645 | Msa1388160:intron | 30.0% | |
| TTCAAGATCGAATTCAAGAT+AGG | + | tig0021036:106656-106675 | Msa1388160:intergenic | 30.0% | |
| TATGCCTGTAAGATATTTGA+CGG | + | tig0021036:106753-106772 | Msa1388160:intergenic | 30.0% | |
| GAAGTAAGAAGTGAATTTGA+GGG | + | tig0021036:106810-106829 | Msa1388160:intergenic | 30.0% | |
| AGAAGTAAGAAGTGAATTTG+AGG | + | tig0021036:106811-106830 | Msa1388160:intergenic | 30.0% | |
| AGCAAGAAAGATTAACCTTA+CGG | + | tig0021036:107104-107123 | Msa1388160:intergenic | 30.0% | |
| AAAAGCGATTTATCGTTGAT+GGG | + | tig0021036:107129-107148 | Msa1388160:intergenic | 30.0% | |
| GCTTACAATTTCTTAACAAG+TGG | + | tig0021036:107152-107171 | Msa1388160:intergenic | 30.0% | |
| AAATTGTAAGCTTCTTGAAG+AGG | - | tig0021036:107161-107180 | Msa1388160:intron | 30.0% | |
| TTCTTGAAGAGGTTATGTTT+AGG | - | tig0021036:107172-107191 | Msa1388160:intron | 30.0% | |
| !! | ATTTTGATCTCACTAAGTGA+AGG | + | tig0021036:107241-107260 | Msa1388160:intergenic | 30.0% |
| !! | TTCTTCCATTTTTCCCAATT+TGG | - | tig0021036:107387-107406 | Msa1388160:intron | 30.0% |
| !!! | GCATTTGTCAAGTTTTAAAG+AGG | - | tig0021036:107449-107468 | Msa1388160:intron | 30.0% |
| AATTACAATCGTCCACAAAT+AGG | + | tig0021036:107636-107655 | Msa1388160:intergenic | 30.0% | |
| TGTAATTATGTCACAGAGAA+AGG | - | tig0021036:107649-107668 | Msa1388160:intron | 30.0% | |
| ! | GGATTTTTAATAACAGCCAT+AGG | - | tig0021036:107967-107986 | Msa1388160:intron | 30.0% |
| !! | GGAAATTTTTGAAGGAATGT+CGG | - | tig0021036:107988-108007 | Msa1388160:intron | 30.0% |
| ! | GAAAAAGTGTAAAACTCATG+CGG | + | tig0021036:108165-108184 | Msa1388160:intergenic | 30.0% |
| GAATTGTCTTCAATATCAGT+TGG | + | tig0021036:108277-108296 | Msa1388160:intergenic | 30.0% | |
| ! | TTTTATTCAAAAGTTGTGCG+TGG | - | tig0021036:108378-108397 | Msa1388160:intron | 30.0% |
| GCATATCTTACAACAAAGAA+GGG | + | tig0021036:108536-108555 | Msa1388160:intergenic | 30.0% | |
| TGCATATCTTACAACAAAGA+AGG | + | tig0021036:108537-108556 | Msa1388160:intergenic | 30.0% | |
| ! | AAGATATGCAACTTTGCTTT+TGG | - | tig0021036:108547-108566 | Msa1388160:intron | 30.0% |
| AAATAACCGAATTGTAAGCA+TGG | + | tig0021036:108652-108671 | Msa1388160:intergenic | 30.0% | |
| GGTTGTTTATAGCTCATAAT+TGG | - | tig0021036:108702-108721 | Msa1388160:intron | 30.0% | |
| TATTGTATGATGCTTAGTGA+AGG | - | tig0021036:108983-109002 | Msa1388160:intron | 30.0% | |
| TGAAAAAACTCGAATGATGT+CGG | + | tig0021036:109073-109092 | Msa1388160:intergenic | 30.0% | |
| CAAAAAACATTCTCATAAGG+AGG | - | tig0021036:109136-109155 | Msa1388160:intron | 30.0% | |
| !! | ACTCCTTCCTCTATTAGTTT+TGG | - | tig0021036:103681-103700 | Msa1388160:CDS | 35.0% |
| !! | TATGTTTTTGTGCTCTCACT+TGG | - | tig0021036:103954-103973 | Msa1388160:intron | 35.0% |
| !! | ATGTTTTTGTGCTCTCACTT+GGG | - | tig0021036:103955-103974 | Msa1388160:intron | 35.0% |
| ATATTACAGAGGTAGCAAAC+TGG | + | tig0021036:104107-104126 | Msa1388160:intergenic | 35.0% | |
| !! | TTTACTTTTCTGTCTCGTTG+CGG | + | tig0021036:104485-104504 | Msa1388160:intergenic | 35.0% |
| !! | GGTTTGATTTGTTCTTGATG+TGG | + | tig0021036:104514-104533 | Msa1388160:intergenic | 35.0% |
| !! | GATTTTGTTGTCTTAGTGCA+AGG | + | tig0021036:104535-104554 | Msa1388160:intergenic | 35.0% |
| ! | CCAAAAGTGCACTATATTAC+AGG | + | tig0021036:104655-104674 | Msa1388160:intergenic | 35.0% |
| ! | CCTGTAATATAGTGCACTTT+TGG | - | tig0021036:104652-104671 | Msa1388160:intron | 35.0% |
| !!! | GAATCTTCATTTTTCAAGGG+TGG | + | tig0021036:105415-105434 | Msa1388160:intergenic | 35.0% |
| !!! | TTTTTTTATTGGGGTACACG+TGG | + | tig0021036:105281-105300 | Msa1388160:intergenic | 35.0% |
| !!! | GAATCTTCATTTTTCAAGGG+TGG | - | tig0021036:105415-105434 | Msa1388160:intron | 35.0% |
| ! | CAAAAGTGCACCATATTACA+GGG | - | tig0021036:105471-105490 | Msa1388160:intron | 35.0% |
| ! | AAAAGTGCACCATATTACAG+GGG | - | tig0021036:105472-105491 | Msa1388160:intron | 35.0% |
| !!! | TGTTTTTAGCCCCTGTAATA+TGG | + | tig0021036:105484-105503 | Msa1388160:intergenic | 35.0% |
| ! | TTTTGATACATTGACACGGT+TGG | + | tig0021036:105585-105604 | Msa1388160:intergenic | 35.0% |
| TATAAACTCACACACACAAG+TGG | + | tig0021036:106038-106057 | Msa1388160:intergenic | 35.0% | |
| TGGAAAATCACGATTCAAGA+TGG | + | tig0021036:106370-106389 | Msa1388160:intergenic | 35.0% | |
| !! | TAAAGCATTTTCAGAAGCGA+AGG | - | tig0021036:106425-106444 | Msa1388160:intron | 35.0% |
| CGTGGATGTATGTGAAATTA+GGG | + | tig0021036:106507-106526 | Msa1388160:intergenic | 35.0% | |
| TCGTGGATGTATGTGAAATT+AGG | + | tig0021036:106508-106527 | Msa1388160:intergenic | 35.0% | |
| CAGATTTACCTGATGAATGT+TGG | - | tig0021036:106585-106604 | Msa1388160:intron | 35.0% | |
| ATCAATTCCCAACATTCATC+AGG | + | tig0021036:106596-106615 | Msa1388160:intergenic | 35.0% | |
| TTCGATCTTGAATTCTACCT+TGG | - | tig0021036:106664-106683 | Msa1388160:intron | 35.0% | |
| !! | TCGGTGAATCTTTTGAAGAT+GGG | + | tig0021036:106779-106798 | Msa1388160:intergenic | 35.0% |
| ! | AAAGAATTTTGTCGAGGTCA+GGG | + | tig0021036:106835-106854 | Msa1388160:intergenic | 35.0% |
| AGTGATGTGAGTTTCTTCAA+CGG | + | tig0021036:106875-106894 | Msa1388160:intergenic | 35.0% | |
| AATTACAGTAGCTATTGCGA+TGG | - | tig0021036:107045-107064 | Msa1388160:intron | 35.0% | |
| ATTACAGTAGCTATTGCGAT+GGG | - | tig0021036:107046-107065 | Msa1388160:intron | 35.0% | |
| GAAAAGCGATTTATCGTTGA+TGG | + | tig0021036:107130-107149 | Msa1388160:intergenic | 35.0% | |
| ! | ATTCCTAAGGAGTGTAAACA+AGG | + | tig0021036:107215-107234 | Msa1388160:intergenic | 35.0% |
| TAAGTGAAGGACAATTCCTA+AGG | + | tig0021036:107228-107247 | Msa1388160:intergenic | 35.0% | |
| TCTATTTGGCTGACAATACA+TGG | - | tig0021036:107338-107357 | Msa1388160:intron | 35.0% | |
| TAGATTCACACTTGAACAGT+GGG | + | tig0021036:107503-107522 | Msa1388160:intergenic | 35.0% | |
| TGTTCAAGTGTGAATCTACT+TGG | - | tig0021036:107505-107524 | Msa1388160:intron | 35.0% | |
| GTTGAAGTTGTCAGATACAA+AGG | - | tig0021036:107558-107577 | Msa1388160:intron | 35.0% | |
| GTGATCTCAAAGAATTGTTG+TGG | - | tig0021036:107601-107620 | Msa1388160:intron | 35.0% | |
| ! | TGGACTTTTGAACCTATTTG+TGG | - | tig0021036:107621-107640 | Msa1388160:intron | 35.0% |
| TACAGTGTAATGCAAACAGT+TGG | - | tig0021036:107905-107924 | Msa1388160:intron | 35.0% | |
| ! | GTTGCAGTGTTGTTAAATTG+CGG | - | tig0021036:107927-107946 | Msa1388160:intron | 35.0% |
| AAAAATCCATCATTCTGCCA+TGG | + | tig0021036:107955-107974 | Msa1388160:intergenic | 35.0% | |
| ! | CAGCCATAGGAAATTTTTGA+AGG | - | tig0021036:107980-107999 | Msa1388160:intron | 35.0% |
| TTGCCTTGAATTGCATAAGT+TGG | - | tig0021036:108127-108146 | Msa1388160:intron | 35.0% | |
| TTGTCTTCAATATCAGTTGG+AGG | + | tig0021036:108274-108293 | Msa1388160:intergenic | 35.0% | |
| GAAAGACCATGCTTACAATT+CGG | - | tig0021036:108643-108662 | Msa1388160:intron | 35.0% | |
| TCATCTCACCTTATGACAAA+AGG | - | tig0021036:108848-108867 | Msa1388160:intron | 35.0% | |
| TCACCTTATGACAAAAGGAA+TGG | - | tig0021036:108853-108872 | Msa1388160:intron | 35.0% | |
| AATTCAAAACCCACAGAAGT+AGG | - | tig0021036:109017-109036 | Msa1388160:intron | 35.0% | |
| GAAAAAACTCGAATGATGTC+GGG | + | tig0021036:109072-109091 | Msa1388160:intergenic | 35.0% | |
| GCGCAAAAAACATTCTCATA+AGG | - | tig0021036:109133-109152 | Msa1388160:intron | 35.0% | |
| TGCTAAAACAAGGTCTTCTA+TGG | + | tig0021036:109195-109214 | Msa1388160:intergenic | 35.0% | |
| !! | AGTCTCTAGAGTGAATACTT+TGG | - | tig0021036:109214-109233 | Msa1388160:CDS | 35.0% |
| TGCTGAAACAAGGTTATCTG+TGG | + | tig0021036:103634-103653 | None:intergenic | 40.0% | |
| ! | TTCTAGAGACTGCTGAAACA+AGG | + | tig0021036:103644-103663 | None:intergenic | 40.0% |
| CGACCAAAACTAATAGAGGA+AGG | + | tig0021036:103687-103706 | Msa1388160:intergenic | 40.0% | |
| !! | ATGACATGCCTTTGGTCTTA+CGG | + | tig0021036:103710-103729 | Msa1388160:intergenic | 40.0% |
| ATCCACATGGATCATGTAAC+AGG | + | tig0021036:103858-103877 | Msa1388160:intergenic | 40.0% | |
| ACTACTTCTAGACATCCACA+TGG | + | tig0021036:103871-103890 | Msa1388160:intergenic | 40.0% | |
| ATGAGCACAATGTCAGTGTA+GGG | + | tig0021036:103993-104012 | Msa1388160:intergenic | 40.0% | |
| ACTGGCTATTCAGTAAAGAG+CGG | + | tig0021036:104089-104108 | Msa1388160:intergenic | 40.0% | |
| GAGATTCTGCTAACACATTG+GGG | + | tig0021036:104750-104769 | Msa1388160:intergenic | 40.0% | |
| GGAGATTCTGCTAACACATT+GGG | + | tig0021036:104751-104770 | Msa1388160:intergenic | 40.0% | |
| AGGAGATTCTGCTAACACAT+TGG | + | tig0021036:104752-104771 | Msa1388160:intergenic | 40.0% | |
| TGGACATTAATTTACACGCG+TGG | + | tig0021036:104821-104840 | Msa1388160:intergenic | 40.0% | |
| ! | CCTGTAATATGGTGCACTTT+TGG | + | tig0021036:105473-105492 | Msa1388160:intergenic | 40.0% |
| ! | CCAAAAGTGCACCATATTAC+AGG | - | tig0021036:105470-105489 | Msa1388160:intron | 40.0% |
| !!! | TCAGCGACTATTTTGACTAC+TGG | + | tig0021036:105635-105654 | Msa1388160:intergenic | 40.0% |
| GGCAAAATGCCGAAATTGTT+AGG | - | tig0021036:105951-105970 | Msa1388160:intron | 40.0% | |
| AAATGCCGAAATTGTTAGGC+CGG | - | tig0021036:105955-105974 | Msa1388160:intron | 40.0% | |
| ! | TGAAGCTTTGCGTTAGGTTT+TGG | + | tig0021036:106212-106231 | Msa1388160:intergenic | 40.0% |
| TGATTGTGAAGCTTTGCGTT+AGG | + | tig0021036:106218-106237 | Msa1388160:intergenic | 40.0% | |
| GACAGTAAAAGGTTAGGGTT+TGG | + | tig0021036:106390-106409 | Msa1388160:intergenic | 40.0% | |
| ! | TAGGGTTTAGAGTTAGGGTT+TGG | + | tig0021036:106489-106508 | Msa1388160:intergenic | 40.0% |
| CACATACATCCACGATGAAA+AGG | - | tig0021036:106513-106532 | Msa1388160:intron | 40.0% | |
| CATCCACGATGAAAAGGAAA+AGG | - | tig0021036:106519-106538 | Msa1388160:intron | 40.0% | |
| ! | CTTCCTTTTCCTTTTCATCG+TGG | + | tig0021036:106525-106544 | Msa1388160:intergenic | 40.0% |
| GAGTGATAATCGCAAATGGT+TGG | + | tig0021036:106729-106748 | Msa1388160:intergenic | 40.0% | |
| CTCACCGTCAAATATCTTAC+AGG | - | tig0021036:106746-106765 | Msa1388160:intron | 40.0% | |
| !! | GTCGGTGAATCTTTTGAAGA+TGG | + | tig0021036:106780-106799 | Msa1388160:intergenic | 40.0% |
| GAATTTGAGGGAGGTTATGT+CGG | + | tig0021036:106798-106817 | Msa1388160:intergenic | 40.0% | |
| GTAAGAAGTGAATTTGAGGG+AGG | + | tig0021036:106807-106826 | Msa1388160:intergenic | 40.0% | |
| ! | CAAAGAATTTTGTCGAGGTC+AGG | + | tig0021036:106836-106855 | Msa1388160:intergenic | 40.0% |
| ! | CTTCGCAAAGAATTTTGTCG+AGG | + | tig0021036:106841-106860 | Msa1388160:intergenic | 40.0% |
| AAAACTCGCAATCCATTTGC+GGG | + | tig0021036:106923-106942 | Msa1388160:intergenic | 40.0% | |
| GAAAACTCGCAATCCATTTG+CGG | + | tig0021036:106924-106943 | Msa1388160:intergenic | 40.0% | |
| AATGTTGGAACAAGTGAGAG+AGG | + | tig0021036:106968-106987 | Msa1388160:intergenic | 40.0% | |
| TTACAGTAGCTATTGCGATG+GGG | - | tig0021036:107047-107066 | Msa1388160:intron | 40.0% | |
| ! | CATCCTTGTTTACACTCCTT+AGG | - | tig0021036:107209-107228 | Msa1388160:intron | 40.0% |
| CAGCTCCAAATTGGGAAAAA+TGG | + | tig0021036:107395-107414 | Msa1388160:intergenic | 40.0% | |
| AAGTCAAGCAGCTCCAAATT+GGG | + | tig0021036:107403-107422 | Msa1388160:intergenic | 40.0% | |
| GAACTCTTGCCATCACATAT+CGG | - | tig0021036:107423-107442 | Msa1388160:intron | 40.0% | |
| AAATGCCTTCCGATATGTGA+TGG | + | tig0021036:107435-107454 | Msa1388160:intergenic | 40.0% | |
| GTAGATTCACACTTGAACAG+TGG | + | tig0021036:107504-107523 | Msa1388160:intergenic | 40.0% | |
| !! | CTAGTATTCTGAAAGCGTTG+TGG | - | tig0021036:107729-107748 | Msa1388160:intron | 40.0% |
| GCCATATAAACACGCAATTG+CGG | + | tig0021036:108033-108052 | Msa1388160:intergenic | 40.0% | |
| GCAATTGCGTGTTTATATGG+CGG | - | tig0021036:108032-108051 | Msa1388160:intron | 40.0% | |
| !!! | GTGTTTATATGGCGGACTTT+TGG | - | tig0021036:108040-108059 | Msa1388160:intron | 40.0% |
| ! | TAACACGCAAGTGTTGTTGA+TGG | + | tig0021036:108073-108092 | Msa1388160:intergenic | 40.0% |
| CGTCCAACTTATGCAATTCA+AGG | + | tig0021036:108133-108152 | Msa1388160:intergenic | 40.0% | |
| ! | TAGTTTGTGTGTGCTAGCTT+TGG | - | tig0021036:108205-108224 | Msa1388160:intron | 40.0% |
| TCTTCAATATCAGTTGGAGG+AGG | + | tig0021036:108271-108290 | Msa1388160:intergenic | 40.0% | |
| ! | CGACCATTCCTTTTGTCATA+AGG | + | tig0021036:108859-108878 | Msa1388160:intergenic | 40.0% |
| AGGTGACAATCTCTTCATCA+TGG | - | tig0021036:108942-108961 | Msa1388160:intron | 40.0% | |
| ATGATGCTTAGTGAAGGTTG+CGG | - | tig0021036:108989-109008 | Msa1388160:intron | 40.0% | |
| CTCTGCTTTCAAAGAAACTG+AGG | - | tig0021036:109099-109118 | Msa1388160:intron | 40.0% | |
| TGCTTCAGGAATGAATGAAG+TGG | - | tig0021036:109160-109179 | Msa1388160:intron | 40.0% | |
| ! | CTCTAGAGACTGCTAAAACA+AGG | + | tig0021036:109205-109224 | Msa1388160:intergenic | 40.0% |
| ! | ACTCCTTCGTCTATTAGCTT+TGG | - | tig0021036:109242-109261 | Msa1388160:CDS | 40.0% |
| CAACCAAAGCTAATAGACGA+AGG | + | tig0021036:109248-109267 | Msa1388160:intergenic | 40.0% | |
| !! | ATGACATGCCTTTGGTGTTA+CGG | + | tig0021036:109271-109290 | Msa1388160:intergenic | 40.0% |
| ACGGCGACCAAAACTAATAG+AGG | + | tig0021036:103691-103710 | Msa1388160:intergenic | 45.0% | |
| AGGGACAAATGACATGCCTT+TGG | + | tig0021036:103718-103737 | Msa1388160:intergenic | 45.0% | |
| GTCCTGTTACATGATCCATG+TGG | - | tig0021036:103853-103872 | Msa1388160:intron | 45.0% | |
| TGAGCACAATGTCAGTGTAG+GGG | + | tig0021036:103992-104011 | Msa1388160:intergenic | 45.0% | |
| CATGAGCACAATGTCAGTGT+AGG | + | tig0021036:103994-104013 | Msa1388160:intergenic | 45.0% | |
| TGTTAGCAGAATCTCCTACG+TGG | - | tig0021036:104755-104774 | Msa1388160:intron | 45.0% | |
| !! | AGGAGATTCTGCTGACTCAT+TGG | - | tig0021036:105372-105391 | Msa1388160:intron | 45.0% |
| GGCATCCGACCTAACAATTT+CGG | + | tig0021036:105988-106007 | Msa1388160:intergenic | 45.0% | |
| AAACTCACACACACAAGTGG+AGG | + | tig0021036:106035-106054 | Msa1388160:intergenic | 45.0% | |
| GACAAGGGAAAGAGAATCCA+AGG | + | tig0021036:106684-106703 | Msa1388160:intergenic | 45.0% | |
| GAGGAACTGTTTCGAGACAA+GGG | + | tig0021036:106699-106718 | Msa1388160:intergenic | 45.0% | |
| AGAGGAACTGTTTCGAGACA+AGG | + | tig0021036:106700-106719 | Msa1388160:intergenic | 45.0% | |
| !! | GCAAATGGTTGGTGATTGAG+AGG | + | tig0021036:106718-106737 | Msa1388160:intergenic | 45.0% |
| CGGTGAGTGATAATCGCAAA+TGG | + | tig0021036:106733-106752 | Msa1388160:intergenic | 45.0% | |
| CATTTGCGGGAATGGTGAAT+TGG | + | tig0021036:106910-106929 | Msa1388160:intergenic | 45.0% | |
| CAATTCACCATTCCCGCAAA+TGG | - | tig0021036:106908-106927 | Msa1388160:intron | 45.0% | |
| TGCACTTCTCAAACTCCGTA+AGG | - | tig0021036:107086-107105 | Msa1388160:intron | 45.0% | |
| CAAGTCAAGCAGCTCCAAAT+TGG | + | tig0021036:107404-107423 | Msa1388160:intergenic | 45.0% | |
| TCTTGCCATCACATATCGGA+AGG | - | tig0021036:107427-107446 | Msa1388160:intron | 45.0% | |
| GAACTTTGTAGTTCCCAAGC+TGG | - | tig0021036:107531-107550 | Msa1388160:intron | 45.0% | |
| AACTTCAACACCTCCAGCTT+GGG | + | tig0021036:107547-107566 | Msa1388160:intergenic | 45.0% | |
| GTTGTTAAATTGCGGCACCA+TGG | - | tig0021036:107935-107954 | Msa1388160:intron | 45.0% | |
| GCCGCAATTGCGTGTTTATA+TGG | - | tig0021036:108029-108048 | Msa1388160:intron | 45.0% | |
| ! | GCATAAGTTGGACGACTCAT+TGG | - | tig0021036:108139-108158 | Msa1388160:intron | 45.0% |
| ATGCTACTGCCTACTTCTGT+GGG | + | tig0021036:109029-109048 | Msa1388160:intergenic | 45.0% | |
| TCTCATAAGGAGGATGCTTC+AGG | - | tig0021036:109146-109165 | Msa1388160:intron | 45.0% | |
| TTTGGTTGCCGTAACACCAA+AGG | - | tig0021036:109260-109279 | Msa1388160:CDS | 45.0% | |
| AGGGACAAATGACATGCCTT+TGG | + | tig0021036:103718-103737 | Msa1388160:intergenic | 45.0% | |
| GTGTGGAAAGGGATCAAACT+CGG | - | tig0021036:109310-109329 | Msa1388160:CDS | 45.0% | |
| TGTGGAAAGGGATCAAACTC+GGG | - | tig0021036:109311-109330 | Msa1388160:CDS | 45.0% | |
| !!! | ATGAATATTTAATTTTTTTA+GGG | + | tig0021036:104253-104272 | Msa1388160:intergenic | 5.0% |
| !!! | AATGAATATTTAATTTTTTT+AGG | + | tig0021036:104254-104273 | Msa1388160:intergenic | 5.0% |
| !! | TTAAAAAAATAAAAAAAATC+TGG | + | tig0021036:104919-104938 | Msa1388160:intergenic | 5.0% |
| !! | TTAAAAAAATAAAAAAAATC+TGG | + | tig0021036:104919-104938 | Msa1388160:intergenic | 5.0% |
| !!! | TTAATTTTATTTTTTTATTG+GGG | + | tig0021036:105290-105309 | Msa1388160:intergenic | 5.0% |
| TTTGGTCGCCGTAAGACCAA+AGG | - | tig0021036:103699-103718 | Msa1388160:CDS | 50.0% | |
| TGTCTCGTTGCGGTATCTGT+CGG | + | tig0021036:104475-104494 | Msa1388160:intergenic | 50.0% | |
| TGCTAACACATTGGGGTCAG+GGG | + | tig0021036:104743-104762 | Msa1388160:intergenic | 50.0% | |
| CTGCTAACACATTGGGGTCA+GGG | + | tig0021036:104744-104763 | Msa1388160:intergenic | 50.0% | |
| TCTGCTAACACATTGGGGTC+AGG | + | tig0021036:104745-104764 | Msa1388160:intergenic | 50.0% | |
| AGCGTGACACGTCATCAGAA+AGG | - | tig0021036:105320-105339 | Msa1388160:intron | 50.0% | |
| AGTCAGCAGAATCTCCTACG+TGG | + | tig0021036:105369-105388 | Msa1388160:intergenic | 50.0% | |
| !! | TCTGCTGACTCATTGGAGTC+AGG | - | tig0021036:105379-105398 | Msa1388160:intron | 50.0% |
| !! | CTGCTGACTCATTGGAGTCA+GGG | - | tig0021036:105380-105399 | Msa1388160:intron | 50.0% |
| !! | TGCTGACTCATTGGAGTCAG+GGG | - | tig0021036:105381-105400 | Msa1388160:intron | 50.0% |
| TCCAGAAGTCCTAGCTCAAC+TGG | - | tig0021036:105930-105949 | Msa1388160:intron | 50.0% | |
| ! | GGCATTTTGCCAGTTGAGCT+AGG | + | tig0021036:105942-105961 | Msa1388160:intergenic | 50.0% |
| GGCATCCGGCCTAACAATTT+CGG | + | tig0021036:105963-105982 | Msa1388160:intergenic | 50.0% | |
| GAAATTGTTAGGCCGGATGC+CGG | - | tig0021036:105962-105981 | Msa1388160:intron | 50.0% | |
| TAACAATTTCGGCCGGCATC+CGG | + | tig0021036:105977-105996 | Msa1388160:intergenic | 50.0% | |
| TCCGACCTAACAATTTCGGC+CGG | + | tig0021036:105984-106003 | Msa1388160:intergenic | 50.0% | |
| ! | ACACACACAAGTGGAGGTAC+TGG | + | tig0021036:106029-106048 | Msa1388160:intergenic | 50.0% |
| TGCGGGAATGGTGAATTGGT+AGG | + | tig0021036:106906-106925 | Msa1388160:intergenic | 50.0% | |
| TCGCAATCCATTTGCGGGAA+TGG | + | tig0021036:106918-106937 | Msa1388160:intergenic | 50.0% | |
| GAGGTTGAGCTCTTCAAGCT+CGG | + | tig0021036:107007-107026 | Msa1388160:intergenic | 50.0% | |
| TAGCTATTGCGATGGGGTAG+AGG | - | tig0021036:107053-107072 | Msa1388160:intron | 50.0% | |
| CTTTGTAGTTCCCAAGCTGG+AGG | - | tig0021036:107534-107553 | Msa1388160:intron | 50.0% | |
| CAACTTCAACACCTCCAGCT+TGG | + | tig0021036:107548-107567 | Msa1388160:intergenic | 50.0% | |
| TGCACACAACTGAGAGAACG+TGG | - | tig0021036:107694-107713 | Msa1388160:intron | 50.0% | |
| ! | CACGCAAGTGTTGTTGATGG+CGG | + | tig0021036:108070-108089 | Msa1388160:intergenic | 50.0% |
| AGTTGTGCGTGGCTATGACA+TGG | - | tig0021036:108389-108408 | Msa1388160:intron | 50.0% | |
| GATGCTACTGCCTACTTCTG+TGG | + | tig0021036:109030-109049 | Msa1388160:intergenic | 50.0% | |
| CAGAAGTAGGCAGTAGCATC+TGG | - | tig0021036:109030-109049 | Msa1388160:intron | 50.0% | |
| TTCCACACTGAACAGCTCGA+GGG | + | tig0021036:109298-109317 | Msa1388160:intergenic | 50.0% | |
| TTTCCACACTGAACAGCTCG+AGG | + | tig0021036:109299-109318 | Msa1388160:intergenic | 50.0% | |
| TCGAGCTGTTCAGTGTGGAA+AGG | - | tig0021036:109298-109317 | Msa1388160:CDS | 50.0% | |
| CGAGCTGTTCAGTGTGGAAA+GGG | - | tig0021036:109299-109318 | Msa1388160:CDS | 50.0% | |
| GCACGGGAAGGGATCAAACT+CGG | - | tig0021036:103749-103768 | Msa1388160:CDS | 55.0% | |
| CACGGGAAGGGATCAAACTC+GGG | - | tig0021036:103750-103769 | Msa1388160:CDS | 55.0% | |
| AAGACACGTCACTGCCACGT+AGG | + | tig0021036:104772-104791 | Msa1388160:intergenic | 55.0% | |
| ATGCCACATCACTGCCACGT+AGG | - | tig0021036:105352-105371 | Msa1388160:intron | 55.0% | |
| TCTCCTACGTGGCAGTGATG+TGG | + | tig0021036:105358-105377 | Msa1388160:intergenic | 55.0% | |
| GCCAGTTGAGCTAGGACTTC+TGG | + | tig0021036:105934-105953 | Msa1388160:intergenic | 55.0% | |
| GGATGCCGGCCGAAATTGTT+AGG | - | tig0021036:105976-105995 | Msa1388160:intron | 55.0% | |
| GCCGGCCGAAATTGTTAGGT+CGG | - | tig0021036:105980-105999 | Msa1388160:intron | 55.0% | |
| GTTAGGTCGGATGCCATGTC+CGG | - | tig0021036:105993-106012 | Msa1388160:intron | 55.0% | |
| TTAGGTCGGATGCCATGTCC+GGG | - | tig0021036:105994-106013 | Msa1388160:intron | 55.0% | |
| !! | AGGTACTGGAGTTCGAACCC+CGG | + | tig0021036:106015-106034 | Msa1388160:intergenic | 55.0% |
| GTTGAGCTCTTCAAGCTCGG+TGG | + | tig0021036:107004-107023 | Msa1388160:intergenic | 55.0% | |
| ! | AATGTCGGTGCCCTCCTTGA+TGG | - | tig0021036:108003-108022 | Msa1388160:intron | 55.0% |
| GTCCCTCGAGCTGTTCAGCA+CGG | - | tig0021036:103732-103751 | Msa1388160:CDS | 60.0% | |
| TCCCTCGAGCTGTTCAGCAC+GGG | - | tig0021036:103733-103752 | Msa1388160:CDS | 60.0% | |
| TCCCGTGCTGAACAGCTCGA+GGG | + | tig0021036:103737-103756 | Msa1388160:intergenic | 60.0% | |
| TTCCCGTGCTGAACAGCTCG+AGG | + | tig0021036:103738-103757 | Msa1388160:intergenic | 60.0% | |
| TCGAGCTGTTCAGCACGGGA+AGG | - | tig0021036:103737-103756 | Msa1388160:CDS | 60.0% | |
| CGAGCTGTTCAGCACGGGAA+GGG | - | tig0021036:103738-103757 | Msa1388160:CDS | 60.0% | |
| TAGGTCGGATGCCATGTCCG+GGG | - | tig0021036:105995-106014 | Msa1388160:intron | 60.0% | |
| TGGAGTTCGAACCCCGGACA+TGG | + | tig0021036:106009-106028 | Msa1388160:intergenic | 60.0% | |
| GCGGCACCATGGCAGAATGA+TGG | - | tig0021036:107946-107965 | Msa1388160:intron | 60.0% | |
| TTGCGGCGTGCCATCAAGGA+GGG | + | tig0021036:108016-108035 | Msa1388160:intergenic | 60.0% | |
| ATTGCGGCGTGCCATCAAGG+AGG | + | tig0021036:108017-108036 | Msa1388160:intergenic | 60.0% | |
| GCAATTGCGGCGTGCCATCA+AGG | + | tig0021036:108020-108039 | Msa1388160:intergenic | 60.0% | |
| GTCCCTCGAGCTGTTCAGTG+TGG | - | tig0021036:109293-109312 | Msa1388160:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021036 | gene | 103624 | 109358 | 103624 | ID=Msa1388160;Name=Msa1388160 |
| tig0021036 | mRNA | 103624 | 109358 | 103624 | ID=Msa1388160-mRNA-1;Parent=Msa1388160;Name=Msa1388160-mRNA-1;_AED=0.37;_eAED=0.40;_QI=0|0|0|0.75|1|1|4|0|139 |
| tig0021036 | exon | 109211 | 109358 | 109211 | ID=Msa1388160-mRNA-1:exon:11005;Parent=Msa1388160-mRNA-1 |
| tig0021036 | exon | 104019 | 104038 | 104019 | ID=Msa1388160-mRNA-1:exon:11004;Parent=Msa1388160-mRNA-1 |
| tig0021036 | exon | 103972 | 103977 | 103972 | ID=Msa1388160-mRNA-1:exon:11003;Parent=Msa1388160-mRNA-1 |
| tig0021036 | exon | 103624 | 103869 | 103624 | ID=Msa1388160-mRNA-1:exon:11002;Parent=Msa1388160-mRNA-1 |
| tig0021036 | CDS | 109211 | 109358 | 109211 | ID=Msa1388160-mRNA-1:cds;Parent=Msa1388160-mRNA-1 |
| tig0021036 | CDS | 104019 | 104038 | 104019 | ID=Msa1388160-mRNA-1:cds;Parent=Msa1388160-mRNA-1 |
| tig0021036 | CDS | 103972 | 103977 | 103972 | ID=Msa1388160-mRNA-1:cds;Parent=Msa1388160-mRNA-1 |
| tig0021036 | CDS | 103624 | 103869 | 103624 | ID=Msa1388160-mRNA-1:cds;Parent=Msa1388160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
