Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1034230 | XP_003625105.2 | 99.303 | 287 | 2 | 0 | 1 | 287 | 1 | 287 | 0.0 | 596 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1034230 | sp|O22216|GPDHC_ARATH | 86.644 | 292 | 34 | 1 | 1 | 287 | 1 | 292 | 0.0 | 534 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1034230 | G7KSM3 | 99.303 | 287 | 2 | 0 | 1 | 287 | 1 | 287 | 0.0 | 596 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043670 | Msa1034230 | -0.800352 | 1.500834e-48 | -8.615850e-47 |
| Msa0092690 | Msa1034230 | -0.803374 | 3.594575e-49 | -8.615850e-47 |
| Msa0092740 | Msa1034230 | -0.814564 | 1.444980e-51 | -8.615850e-47 |
| Msa0137610 | Msa1034230 | -0.814088 | 1.840794e-51 | -8.615850e-47 |
| Msa0225460 | Msa1034230 | 0.802780 | 4.768149e-49 | -8.615850e-47 |
| Msa0225680 | Msa1034230 | 0.813796 | 2.134842e-51 | -8.615850e-47 |
| Msa1034230 | Msa1122030 | 0.811040 | 8.540897e-51 | -8.615850e-47 |
| Msa1034230 | Msa1159760 | 0.831879 | 1.299691e-55 | -8.615850e-47 |
| Msa1034230 | Msa1173330 | 0.810937 | 8.991009e-51 | -8.615850e-47 |
| Msa1034230 | Msa1202190 | 0.805935 | 1.049934e-49 | -8.615850e-47 |
| Msa1034230 | Msa1232710 | 0.802394 | 5.727524e-49 | -8.615850e-47 |
| Msa1034230 | Msa1284040 | 0.803174 | 3.953896e-49 | -8.615850e-47 |
| Msa1034230 | Msa1313300 | 0.802104 | 6.572637e-49 | -8.615850e-47 |
| Msa1034230 | Msa1440260 | -0.801791 | 7.621791e-49 | -8.615850e-47 |
| Msa0274680 | Msa1034230 | 0.815052 | 1.126143e-51 | -8.615850e-47 |
| Msa0930780 | Msa1034230 | 0.810978 | 8.808742e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1034230 | MtrunA17_Chr7g0257111 | 99.303 | 287 | 2 | 0 | 1 | 287 | 1 | 287 | 0.0 | 596 |
| Msa1034230 | MtrunA17_Chr4g0020581 | 84.286 | 280 | 44 | 0 | 8 | 287 | 8 | 287 | 1.39e-179 | 503 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1034230 | AT2G41540.3 | 86.644 | 292 | 34 | 1 | 1 | 287 | 1 | 292 | 0.0 | 534 |
| Msa1034230 | AT2G41540.1 | 86.644 | 292 | 34 | 1 | 1 | 287 | 1 | 292 | 0.0 | 534 |
| Msa1034230 | AT2G41540.4 | 86.644 | 292 | 34 | 1 | 1 | 287 | 1 | 292 | 0.0 | 534 |
| Msa1034230 | AT2G41540.2 | 86.644 | 292 | 34 | 1 | 1 | 287 | 1 | 292 | 0.0 | 534 |
| Msa1034230 | AT3G07690.1 | 80.952 | 273 | 52 | 0 | 18 | 290 | 16 | 288 | 2.19e-172 | 485 |
| Msa1034230 | AT3G07690.2 | 81.481 | 270 | 50 | 0 | 18 | 287 | 16 | 285 | 1.51e-171 | 483 |
Find 63 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCATGGTGGGAAGTATTT+TGG | 0.125449 | 7_1:+69662025 | Msa1034230:exon |
| TTAGGATAAGAATAAGATTT+TGG | 0.174143 | 7_1:-69661808 | None:intergenic |
| TAGATTTCTGAAGCAATATT+TGG | 0.204065 | 7_1:-69663317 | None:intergenic |
| CCAATACACACAATTCTTAA+TGG | 0.226759 | 7_1:-69662134 | None:intergenic |
| GACAACCACATTTCATTGTA+TGG | 0.268525 | 7_1:+69663411 | Msa1034230:CDS |
| GATGAGTTTAGGAGACTAAT+TGG | 0.269554 | 7_1:+69662095 | Msa1034230:CDS |
| TTCGAAAATCTCACGAGTTT+CGG | 0.269563 | 7_1:-69662519 | None:intergenic |
| ATTTATTCTTGTTACTTGTT+AGG | 0.270482 | 7_1:-69661826 | None:intergenic |
| GTACTAGGAAGAACCAAATA+TGG | 0.305967 | 7_1:-69661974 | None:intergenic |
| GATGCTGATATTGTTGTTAA+TGG | 0.309247 | 7_1:+69662485 | Msa1034230:CDS |
| AGGAGAAGCTTGATGAGTTT+AGG | 0.317427 | 7_1:+69662084 | Msa1034230:CDS |
| CTAATTTGCAAGAAGCTGTT+TGG | 0.326140 | 7_1:+69662462 | Msa1034230:CDS |
| ACAAAGTACAAATCAGAATA+TGG | 0.327356 | 7_1:+69662219 | Msa1034230:CDS |
| TCATCTCAGAATCATAATAA+TGG | 0.350904 | 7_1:+69662056 | Msa1034230:CDS |
| CAAGTAACAAGAATAAATTT+TGG | 0.355376 | 7_1:+69661831 | Msa1034230:five_prime_UTR |
| TAATTTGCAAGAAGCTGTTT+GGG | 0.364920 | 7_1:+69662463 | Msa1034230:CDS |
| TTAGACAGAGAGATTATAAC+AGG | 0.380435 | 7_1:-69662578 | None:intergenic |
| CACAATGCTAGTATATTAAT+AGG | 0.394594 | 7_1:+69661884 | Msa1034230:five_prime_UTR |
| TCGAAGAGATTAGTAAGTAT+TGG | 0.404360 | 7_1:+69662537 | Msa1034230:CDS |
| ATCTCACGAGTTTCGGTTGA+AGG | 0.407631 | 7_1:-69662512 | None:intergenic |
| ATGGAGAACATACTTTATCT+TGG | 0.408674 | 7_1:+69663290 | Msa1034230:CDS |
| CCTTTCTGTTATTCAAACTT+AGG | 0.409213 | 7_1:+69663750 | Msa1034230:CDS |
| TGTCTAAGAAACTTTGCTAA+AGG | 0.417206 | 7_1:-69663392 | None:intergenic |
| AAATGTGAATGTAAGTTGTT+AGG | 0.427959 | 7_1:-69661938 | None:intergenic |
| GTGTATTGGAGCAGGTGCTT+GGG | 0.429380 | 7_1:+69662148 | Msa1034230:CDS |
| GAATCATAATAATGGATTAG+AGG | 0.429843 | 7_1:+69662064 | Msa1034230:CDS |
| GGAGTTACAATATGAGGAAC+AGG | 0.446394 | 7_1:-69662623 | None:intergenic |
| ACAACTTTCAAAGGACAAAC+AGG | 0.452124 | 7_1:-69662437 | None:intergenic |
| GCTGATGAGATTCTTAAAGA+TGG | 0.452510 | 7_1:+69662389 | Msa1034230:CDS |
| CCATTAAGAATTGTGTGTAT+TGG | 0.455692 | 7_1:+69662134 | Msa1034230:CDS |
| TGTGTATTGGAGCAGGTGCT+TGG | 0.457732 | 7_1:+69662147 | Msa1034230:CDS |
| TATGCCAATGCTCGAATTTG+TGG | 0.461408 | 7_1:+69663350 | Msa1034230:CDS |
| GAATTTGTGGAGCTGAGAAA+TGG | 0.462642 | 7_1:+69663363 | Msa1034230:CDS |
| TTGAAGCAAGACTTGGTGAT+AGG | 0.462713 | 7_1:+69662357 | Msa1034230:CDS |
| AGACTAATTGGTAAAACTAA+TGG | 0.462975 | 7_1:+69662107 | Msa1034230:CDS |
| TTCGACAGCTGGAGTGCCTA+TGG | 0.466991 | 7_1:+69663271 | Msa1034230:intron |
| ATCAGAATATGGAGAAGAGC+AGG | 0.496538 | 7_1:+69662230 | Msa1034230:CDS |
| TAAAGGTATTGAAGCTGCAT+TGG | 0.499510 | 7_1:+69662598 | Msa1034230:CDS |
| GTTATAATCTCTCTGTCTAA+AGG | 0.502564 | 7_1:+69662581 | Msa1034230:CDS |
| TTTGTGGGAGTTACAATATG+AGG | 0.502737 | 7_1:-69662629 | None:intergenic |
| ACAACCACATTTCATTGTAT+GGG | 0.504294 | 7_1:+69663412 | Msa1034230:CDS |
| AGCTCCACAAATTCGAGCAT+TGG | 0.510159 | 7_1:-69663354 | None:intergenic |
| AAGAAAATATGCAGCAGCAT+TGG | 0.517402 | 7_1:-69661782 | None:intergenic |
| AATGTCTATGCAATTGGAGC+TGG | 0.522412 | 7_1:+69663479 | Msa1034230:CDS |
| AAATGAATCAAAGAAGTACT+AGG | 0.522560 | 7_1:-69661989 | None:intergenic |
| AGAGATTAGTAAGTATTGGA+AGG | 0.527494 | 7_1:+69662541 | Msa1034230:CDS |
| CCTTGTCACACATGAGGTCA+TGG | 0.530388 | 7_1:+69663445 | Msa1034230:CDS |
| TACTAGGAAGAACCAAATAT+GGG | 0.535712 | 7_1:-69661973 | None:intergenic |
| GAGAACATACTTTATCTTGG+TGG | 0.535772 | 7_1:+69663293 | Msa1034230:CDS |
| AAATTAGTAACAACTTTCAA+AGG | 0.547608 | 7_1:-69662446 | None:intergenic |
| AGAATTGTGTGTATTGGAGC+AGG | 0.556506 | 7_1:+69662140 | Msa1034230:CDS |
| CCTAAGTTTGAATAACAGAA+AGG | 0.562126 | 7_1:-69663750 | None:intergenic |
| AAATATGTTGAAGCAAGACT+TGG | 0.566622 | 7_1:+69662350 | Msa1034230:CDS |
| AGATAAAGTATGTTCTCCAT+AGG | 0.586722 | 7_1:-69663287 | None:intergenic |
| TGTATTGGAGCAGGTGCTTG+GGG | 0.597611 | 7_1:+69662149 | Msa1034230:CDS |
| TTTGTGGAGCTGAGAAATGG+AGG | 0.630464 | 7_1:+69663366 | Msa1034230:CDS |
| TATGCAGCAGCATTGGAATG+TGG | 0.633034 | 7_1:-69661775 | None:intergenic |
| GTCACACATGAGGTCATGGG+TGG | 0.637923 | 7_1:+69663449 | Msa1034230:CDS |
| CCATGACCTCATGTGTGACA+AGG | 0.642037 | 7_1:-69663445 | None:intergenic |
| CTTGTCACACATGAGGTCAT+GGG | 0.650326 | 7_1:+69663446 | Msa1034230:CDS |
| TGCTTCAGAAATCTACAACA+AGG | 0.686795 | 7_1:+69663325 | Msa1034230:CDS |
| TAGTGACCTTGTCACACATG+AGG | 0.687205 | 7_1:+69663439 | Msa1034230:CDS |
| TTGTCCCATACAATGAAATG+TGG | 0.713044 | 7_1:-69663416 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATTTGAATAATTGAAAA+TGG | + | chr7_1:69662718-69662737 | Msa1034230:intron | 15.0% |
| !! | TTTATAAATTGAATTCGTTA+TGG | - | chr7_1:69662988-69663007 | None:intergenic | 15.0% |
| !!! | TAAAATTTTGCATTGAAATA+AGG | - | chr7_1:69663212-69663231 | None:intergenic | 15.0% |
| !! | TAGATTTGAATAATTGAAAA+TGG | + | chr7_1:69662718-69662737 | Msa1034230:intron | 15.0% |
| !! | TTTATAAATTGAATTCGTTA+TGG | - | chr7_1:69662988-69663007 | None:intergenic | 15.0% |
| !!! | TAAAATTTTGCATTGAAATA+AGG | - | chr7_1:69663212-69663231 | None:intergenic | 15.0% |
| !!! | TAGGATAAGAATAAGATTTT+GGG | - | chr7_1:69661810-69661829 | None:intergenic | 20.0% |
| !!! | TTAGGATAAGAATAAGATTT+TGG | - | chr7_1:69661811-69661830 | None:intergenic | 20.0% |
| !!! | ATTTATTCTTGTTACTTGTT+AGG | - | chr7_1:69661829-69661848 | None:intergenic | 20.0% |
| !!! | CAAGTAACAAGAATAAATTT+TGG | + | chr7_1:69661831-69661850 | Msa1034230:five_prime_UTR | 20.0% |
| !! | GTTGAGTTATCAAAAATTAA+AGG | + | chr7_1:69661856-69661875 | Msa1034230:five_prime_UTR | 20.0% |
| !!! | TTTCTTTTAGTTTTTGATCA+TGG | + | chr7_1:69662010-69662029 | Msa1034230:exon | 20.0% |
| !! | AAATTAGTAACAACTTTCAA+AGG | - | chr7_1:69662449-69662468 | None:intergenic | 20.0% |
| !! | ATTTGAATAATTGAAAATGG+TGG | + | chr7_1:69662721-69662740 | Msa1034230:intron | 20.0% |
| !! | TAATTCATTAACCACTAATT+TGG | - | chr7_1:69662762-69662781 | None:intergenic | 20.0% |
| !! | CGATGATTAATGAATATAAT+AGG | - | chr7_1:69662810-69662829 | None:intergenic | 20.0% |
| !! | AGAGTAATTGCTAAAATATA+AGG | - | chr7_1:69663147-69663166 | None:intergenic | 20.0% |
| !!! | TAGGATAAGAATAAGATTTT+GGG | - | chr7_1:69661810-69661829 | None:intergenic | 20.0% |
| !!! | TTAGGATAAGAATAAGATTT+TGG | - | chr7_1:69661811-69661830 | None:intergenic | 20.0% |
| !!! | ATTTATTCTTGTTACTTGTT+AGG | - | chr7_1:69661829-69661848 | None:intergenic | 20.0% |
| !!! | CAAGTAACAAGAATAAATTT+TGG | + | chr7_1:69661831-69661850 | Msa1034230:five_prime_UTR | 20.0% |
| !! | GTTGAGTTATCAAAAATTAA+AGG | + | chr7_1:69661856-69661875 | Msa1034230:five_prime_UTR | 20.0% |
| !!! | TTTCTTTTAGTTTTTGATCA+TGG | + | chr7_1:69662010-69662029 | Msa1034230:exon | 20.0% |
| !! | AAATTAGTAACAACTTTCAA+AGG | - | chr7_1:69662449-69662468 | None:intergenic | 20.0% |
| !! | ATTTGAATAATTGAAAATGG+TGG | + | chr7_1:69662721-69662740 | Msa1034230:intron | 20.0% |
| !! | TAATTCATTAACCACTAATT+TGG | - | chr7_1:69662762-69662781 | None:intergenic | 20.0% |
| !! | CGATGATTAATGAATATAAT+AGG | - | chr7_1:69662810-69662829 | None:intergenic | 20.0% |
| !! | AGAGTAATTGCTAAAATATA+AGG | - | chr7_1:69663147-69663166 | None:intergenic | 20.0% |
| ! | CACAATGCTAGTATATTAAT+AGG | + | chr7_1:69661884-69661903 | Msa1034230:five_prime_UTR | 25.0% |
| ! | AAATGTGAATGTAAGTTGTT+AGG | - | chr7_1:69661941-69661960 | None:intergenic | 25.0% |
| !!! | AAATGAATCAAAGAAGTACT+AGG | - | chr7_1:69661992-69662011 | None:intergenic | 25.0% |
| !!! | TTTTAGTTTTTGATCATGGT+GGG | + | chr7_1:69662014-69662033 | Msa1034230:exon | 25.0% |
| ! | TCATCTCAGAATCATAATAA+TGG | + | chr7_1:69662056-69662075 | Msa1034230:CDS | 25.0% |
| !!! | GAATCATAATAATGGATTAG+AGG | + | chr7_1:69662064-69662083 | Msa1034230:CDS | 25.0% |
| ! | AGACTAATTGGTAAAACTAA+TGG | + | chr7_1:69662107-69662126 | Msa1034230:CDS | 25.0% |
| ! | ACAAAGTACAAATCAGAATA+TGG | + | chr7_1:69662219-69662238 | Msa1034230:CDS | 25.0% |
| ! | AATTTGAATGCTATACCAAT+AGG | + | chr7_1:69662897-69662916 | Msa1034230:intron | 25.0% |
| ! | ATTTGAATGCTATACCAATA+GGG | + | chr7_1:69662898-69662917 | Msa1034230:intron | 25.0% |
| !! | AAGAAGAACTTCAAGATTTT+TGG | - | chr7_1:69662958-69662977 | None:intergenic | 25.0% |
| ! | CTAAGTTCAAATTCATTTCT+TGG | - | chr7_1:69663120-69663139 | None:intergenic | 25.0% |
| !!! | TAGATTTCTGAAGCAATATT+TGG | - | chr7_1:69663320-69663339 | None:intergenic | 25.0% |
| ! | TTGAAAAATGTCTATGCAAT+TGG | + | chr7_1:69663473-69663492 | Msa1034230:CDS | 25.0% |
| !!! | GTATCTTTTTACTTTAGAAC+TGG | - | chr7_1:69663645-69663664 | None:intergenic | 25.0% |
| ! | CACAATGCTAGTATATTAAT+AGG | + | chr7_1:69661884-69661903 | Msa1034230:five_prime_UTR | 25.0% |
| ! | AAATGTGAATGTAAGTTGTT+AGG | - | chr7_1:69661941-69661960 | None:intergenic | 25.0% |
| !!! | AAATGAATCAAAGAAGTACT+AGG | - | chr7_1:69661992-69662011 | None:intergenic | 25.0% |
| !!! | TTTTAGTTTTTGATCATGGT+GGG | + | chr7_1:69662014-69662033 | Msa1034230:exon | 25.0% |
| ! | TCATCTCAGAATCATAATAA+TGG | + | chr7_1:69662056-69662075 | Msa1034230:CDS | 25.0% |
| !!! | GAATCATAATAATGGATTAG+AGG | + | chr7_1:69662064-69662083 | Msa1034230:CDS | 25.0% |
| ! | AGACTAATTGGTAAAACTAA+TGG | + | chr7_1:69662107-69662126 | Msa1034230:CDS | 25.0% |
| ! | ACAAAGTACAAATCAGAATA+TGG | + | chr7_1:69662219-69662238 | Msa1034230:CDS | 25.0% |
| ! | AATTTGAATGCTATACCAAT+AGG | + | chr7_1:69662897-69662916 | Msa1034230:intron | 25.0% |
| ! | ATTTGAATGCTATACCAATA+GGG | + | chr7_1:69662898-69662917 | Msa1034230:intron | 25.0% |
| !! | AAGAAGAACTTCAAGATTTT+TGG | - | chr7_1:69662958-69662977 | None:intergenic | 25.0% |
| ! | CTAAGTTCAAATTCATTTCT+TGG | - | chr7_1:69663120-69663139 | None:intergenic | 25.0% |
| !!! | TAGATTTCTGAAGCAATATT+TGG | - | chr7_1:69663320-69663339 | None:intergenic | 25.0% |
| ! | TTGAAAAATGTCTATGCAAT+TGG | + | chr7_1:69663473-69663492 | Msa1034230:CDS | 25.0% |
| !!! | GTATCTTTTTACTTTAGAAC+TGG | - | chr7_1:69663645-69663664 | None:intergenic | 25.0% |
| ! | TCAAGTTTTCATCCCATATT+TGG | + | chr7_1:69661961-69661980 | Msa1034230:five_prime_UTR | 30.0% |
| TACTAGGAAGAACCAAATAT+GGG | - | chr7_1:69661976-69661995 | None:intergenic | 30.0% | |
| !!! | CTTTTAGTTTTTGATCATGG+TGG | + | chr7_1:69662013-69662032 | Msa1034230:exon | 30.0% |
| CCAATACACACAATTCTTAA+TGG | - | chr7_1:69662137-69662156 | None:intergenic | 30.0% | |
| CCATTAAGAATTGTGTGTAT+TGG | + | chr7_1:69662134-69662153 | Msa1034230:CDS | 30.0% | |
| !!! | CAAGAGAAGATGTTTTAAGA+AGG | + | chr7_1:69662303-69662322 | Msa1034230:CDS | 30.0% |
| AAATATGTTGAAGCAAGACT+TGG | + | chr7_1:69662350-69662369 | Msa1034230:CDS | 30.0% | |
| ! | TAATTTGCAAGAAGCTGTTT+GGG | + | chr7_1:69662463-69662482 | Msa1034230:CDS | 30.0% |
| ! | GATGCTGATATTGTTGTTAA+TGG | + | chr7_1:69662485-69662504 | Msa1034230:CDS | 30.0% |
| TCGAAGAGATTAGTAAGTAT+TGG | + | chr7_1:69662537-69662556 | Msa1034230:CDS | 30.0% | |
| !! | AGAGATTAGTAAGTATTGGA+AGG | + | chr7_1:69662541-69662560 | Msa1034230:CDS | 30.0% |
| TTAGACAGAGAGATTATAAC+AGG | - | chr7_1:69662581-69662600 | None:intergenic | 30.0% | |
| GTTATAATCTCTCTGTCTAA+AGG | + | chr7_1:69662581-69662600 | Msa1034230:CDS | 30.0% | |
| !! | GCTTGATGAATCATTTTTGT+GGG | - | chr7_1:69662647-69662666 | None:intergenic | 30.0% |
| !! | TGCTTGATGAATCATTTTTG+TGG | - | chr7_1:69662648-69662667 | None:intergenic | 30.0% |
| AGTGGTTAATGAATTAACGT+CGG | + | chr7_1:69662766-69662785 | Msa1034230:intron | 30.0% | |
| AGTATGAAAACGAACACAAT+AGG | - | chr7_1:69663013-69663032 | None:intergenic | 30.0% | |
| AGATAAAGTATGTTCTCCAT+AGG | - | chr7_1:69663290-69663309 | None:intergenic | 30.0% | |
| ATGGAGAACATACTTTATCT+TGG | + | chr7_1:69663290-69663309 | Msa1034230:CDS | 30.0% | |
| TGTCTAAGAAACTTTGCTAA+AGG | - | chr7_1:69663395-69663414 | None:intergenic | 30.0% | |
| ACAACCACATTTCATTGTAT+GGG | + | chr7_1:69663412-69663431 | Msa1034230:CDS | 30.0% | |
| !!! | ACTGCTCTAAAATTTTCTCA+GGG | - | chr7_1:69663619-69663638 | None:intergenic | 30.0% |
| !!! | TACTGCTCTAAAATTTTCTC+AGG | - | chr7_1:69663620-69663639 | None:intergenic | 30.0% |
| ! | TCAAGTTTTCATCCCATATT+TGG | + | chr7_1:69661961-69661980 | Msa1034230:five_prime_UTR | 30.0% |
| TACTAGGAAGAACCAAATAT+GGG | - | chr7_1:69661976-69661995 | None:intergenic | 30.0% | |
| !!! | CTTTTAGTTTTTGATCATGG+TGG | + | chr7_1:69662013-69662032 | Msa1034230:exon | 30.0% |
| CCAATACACACAATTCTTAA+TGG | - | chr7_1:69662137-69662156 | None:intergenic | 30.0% | |
| CCATTAAGAATTGTGTGTAT+TGG | + | chr7_1:69662134-69662153 | Msa1034230:CDS | 30.0% | |
| !!! | CAAGAGAAGATGTTTTAAGA+AGG | + | chr7_1:69662303-69662322 | Msa1034230:CDS | 30.0% |
| AAATATGTTGAAGCAAGACT+TGG | + | chr7_1:69662350-69662369 | Msa1034230:CDS | 30.0% | |
| ! | TAATTTGCAAGAAGCTGTTT+GGG | + | chr7_1:69662463-69662482 | Msa1034230:CDS | 30.0% |
| ! | GATGCTGATATTGTTGTTAA+TGG | + | chr7_1:69662485-69662504 | Msa1034230:CDS | 30.0% |
| TCGAAGAGATTAGTAAGTAT+TGG | + | chr7_1:69662537-69662556 | Msa1034230:CDS | 30.0% | |
| !! | AGAGATTAGTAAGTATTGGA+AGG | + | chr7_1:69662541-69662560 | Msa1034230:CDS | 30.0% |
| TTAGACAGAGAGATTATAAC+AGG | - | chr7_1:69662581-69662600 | None:intergenic | 30.0% | |
| GTTATAATCTCTCTGTCTAA+AGG | + | chr7_1:69662581-69662600 | Msa1034230:CDS | 30.0% | |
| !! | GCTTGATGAATCATTTTTGT+GGG | - | chr7_1:69662647-69662666 | None:intergenic | 30.0% |
| !! | TGCTTGATGAATCATTTTTG+TGG | - | chr7_1:69662648-69662667 | None:intergenic | 30.0% |
| AGTGGTTAATGAATTAACGT+CGG | + | chr7_1:69662766-69662785 | Msa1034230:intron | 30.0% | |
| AGTATGAAAACGAACACAAT+AGG | - | chr7_1:69663013-69663032 | None:intergenic | 30.0% | |
| AGATAAAGTATGTTCTCCAT+AGG | - | chr7_1:69663290-69663309 | None:intergenic | 30.0% | |
| ATGGAGAACATACTTTATCT+TGG | + | chr7_1:69663290-69663309 | Msa1034230:CDS | 30.0% | |
| TGTCTAAGAAACTTTGCTAA+AGG | - | chr7_1:69663395-69663414 | None:intergenic | 30.0% | |
| ACAACCACATTTCATTGTAT+GGG | + | chr7_1:69663412-69663431 | Msa1034230:CDS | 30.0% | |
| !!! | ACTGCTCTAAAATTTTCTCA+GGG | - | chr7_1:69663619-69663638 | None:intergenic | 30.0% |
| !!! | TACTGCTCTAAAATTTTCTC+AGG | - | chr7_1:69663620-69663639 | None:intergenic | 30.0% |
| AAGAAAATATGCAGCAGCAT+TGG | - | chr7_1:69661785-69661804 | None:intergenic | 35.0% | |
| GTACTAGGAAGAACCAAATA+TGG | - | chr7_1:69661977-69661996 | None:intergenic | 35.0% | |
| !!! | ATCATGGTGGGAAGTATTTT+GGG | + | chr7_1:69662026-69662045 | Msa1034230:exon | 35.0% |
| GATGAGTTTAGGAGACTAAT+TGG | + | chr7_1:69662095-69662114 | Msa1034230:CDS | 35.0% | |
| ! | GCACTTTTACAAGACAGTTA+TGG | + | chr7_1:69662185-69662204 | Msa1034230:CDS | 35.0% |
| GCTGATGAGATTCTTAAAGA+TGG | + | chr7_1:69662389-69662408 | Msa1034230:CDS | 35.0% | |
| ACAACTTTCAAAGGACAAAC+AGG | - | chr7_1:69662440-69662459 | None:intergenic | 35.0% | |
| ! | CTAATTTGCAAGAAGCTGTT+TGG | + | chr7_1:69662462-69662481 | Msa1034230:CDS | 35.0% |
| TTCGAAAATCTCACGAGTTT+CGG | - | chr7_1:69662522-69662541 | None:intergenic | 35.0% | |
| !! | TAAAGGTATTGAAGCTGCAT+TGG | + | chr7_1:69662598-69662617 | Msa1034230:CDS | 35.0% |
| TTTGTGGGAGTTACAATATG+AGG | - | chr7_1:69662632-69662651 | None:intergenic | 35.0% | |
| TACTTGTTCAATCCTTGCAA+AGG | - | chr7_1:69662700-69662719 | None:intergenic | 35.0% | |
| ! | CTTTCGCGACAACTTTTAAT+TGG | - | chr7_1:69662870-69662889 | None:intergenic | 35.0% |
| TCTTGGAATCAAACACATTC+TGG | - | chr7_1:69663103-69663122 | None:intergenic | 35.0% | |
| ATGCAAAGAGTGAAGAATGA+GGG | - | chr7_1:69663245-69663264 | None:intergenic | 35.0% | |
| AATGCAAAGAGTGAAGAATG+AGG | - | chr7_1:69663246-69663265 | None:intergenic | 35.0% | |
| GAGAACATACTTTATCTTGG+TGG | + | chr7_1:69663293-69663312 | Msa1034230:CDS | 35.0% | |
| TGCTTCAGAAATCTACAACA+AGG | + | chr7_1:69663325-69663344 | Msa1034230:CDS | 35.0% | |
| GACAACCACATTTCATTGTA+TGG | + | chr7_1:69663411-69663430 | Msa1034230:CDS | 35.0% | |
| TTGTCCCATACAATGAAATG+TGG | - | chr7_1:69663419-69663438 | None:intergenic | 35.0% | |
| !!! | CTGCTCTAAAATTTTCTCAG+GGG | - | chr7_1:69663618-69663637 | None:intergenic | 35.0% |
| AAGAAAATATGCAGCAGCAT+TGG | - | chr7_1:69661785-69661804 | None:intergenic | 35.0% | |
| GTACTAGGAAGAACCAAATA+TGG | - | chr7_1:69661977-69661996 | None:intergenic | 35.0% | |
| !!! | ATCATGGTGGGAAGTATTTT+GGG | + | chr7_1:69662026-69662045 | Msa1034230:exon | 35.0% |
| GATGAGTTTAGGAGACTAAT+TGG | + | chr7_1:69662095-69662114 | Msa1034230:CDS | 35.0% | |
| ! | GCACTTTTACAAGACAGTTA+TGG | + | chr7_1:69662185-69662204 | Msa1034230:CDS | 35.0% |
| GCTGATGAGATTCTTAAAGA+TGG | + | chr7_1:69662389-69662408 | Msa1034230:CDS | 35.0% | |
| ACAACTTTCAAAGGACAAAC+AGG | - | chr7_1:69662440-69662459 | None:intergenic | 35.0% | |
| ! | CTAATTTGCAAGAAGCTGTT+TGG | + | chr7_1:69662462-69662481 | Msa1034230:CDS | 35.0% |
| TTCGAAAATCTCACGAGTTT+CGG | - | chr7_1:69662522-69662541 | None:intergenic | 35.0% | |
| !! | TAAAGGTATTGAAGCTGCAT+TGG | + | chr7_1:69662598-69662617 | Msa1034230:CDS | 35.0% |
| TTTGTGGGAGTTACAATATG+AGG | - | chr7_1:69662632-69662651 | None:intergenic | 35.0% | |
| TACTTGTTCAATCCTTGCAA+AGG | - | chr7_1:69662700-69662719 | None:intergenic | 35.0% | |
| ! | CTTTCGCGACAACTTTTAAT+TGG | - | chr7_1:69662870-69662889 | None:intergenic | 35.0% |
| TCTTGGAATCAAACACATTC+TGG | - | chr7_1:69663103-69663122 | None:intergenic | 35.0% | |
| ATGCAAAGAGTGAAGAATGA+GGG | - | chr7_1:69663245-69663264 | None:intergenic | 35.0% | |
| AATGCAAAGAGTGAAGAATG+AGG | - | chr7_1:69663246-69663265 | None:intergenic | 35.0% | |
| GAGAACATACTTTATCTTGG+TGG | + | chr7_1:69663293-69663312 | Msa1034230:CDS | 35.0% | |
| TGCTTCAGAAATCTACAACA+AGG | + | chr7_1:69663325-69663344 | Msa1034230:CDS | 35.0% | |
| GACAACCACATTTCATTGTA+TGG | + | chr7_1:69663411-69663430 | Msa1034230:CDS | 35.0% | |
| TTGTCCCATACAATGAAATG+TGG | - | chr7_1:69663419-69663438 | None:intergenic | 35.0% | |
| !!! | CTGCTCTAAAATTTTCTCAG+GGG | - | chr7_1:69663618-69663637 | None:intergenic | 35.0% |
| !!! | GATCATGGTGGGAAGTATTT+TGG | + | chr7_1:69662025-69662044 | Msa1034230:exon | 40.0% |
| !!! | GTGGGAAGTATTTTGGGAAA+TGG | + | chr7_1:69662032-69662051 | Msa1034230:CDS | 40.0% |
| AGGAGAAGCTTGATGAGTTT+AGG | + | chr7_1:69662084-69662103 | Msa1034230:CDS | 40.0% | |
| AGAATTGTGTGTATTGGAGC+AGG | + | chr7_1:69662140-69662159 | Msa1034230:CDS | 40.0% | |
| ATCAGAATATGGAGAAGAGC+AGG | + | chr7_1:69662230-69662249 | Msa1034230:CDS | 40.0% | |
| !! | TTGAAGCAAGACTTGGTGAT+AGG | + | chr7_1:69662357-69662376 | Msa1034230:CDS | 40.0% |
| GGAGTTACAATATGAGGAAC+AGG | - | chr7_1:69662626-69662645 | None:intergenic | 40.0% | |
| CTTGCAAAGGCAAACAGAAA+TGG | - | chr7_1:69662687-69662706 | None:intergenic | 40.0% | |
| CATTTCTGTTTGCCTTTGCA+AGG | + | chr7_1:69662685-69662704 | Msa1034230:intron | 40.0% | |
| GGTTAATGAATTAACGTCGG+TGG | + | chr7_1:69662769-69662788 | Msa1034230:intron | 40.0% | |
| TCAGATATCAGTTGCCCTAT+TGG | - | chr7_1:69662915-69662934 | None:intergenic | 40.0% | |
| AGTGAAGAATGAGGGATGAA+AGG | - | chr7_1:69663237-69663256 | None:intergenic | 40.0% | |
| TATGCCAATGCTCGAATTTG+TGG | + | chr7_1:69663350-69663369 | Msa1034230:CDS | 40.0% | |
| GAATTTGTGGAGCTGAGAAA+TGG | + | chr7_1:69663363-69663382 | Msa1034230:CDS | 40.0% | |
| AATGTCTATGCAATTGGAGC+TGG | + | chr7_1:69663479-69663498 | Msa1034230:CDS | 40.0% | |
| !!! | GATCATGGTGGGAAGTATTT+TGG | + | chr7_1:69662025-69662044 | Msa1034230:exon | 40.0% |
| !!! | GTGGGAAGTATTTTGGGAAA+TGG | + | chr7_1:69662032-69662051 | Msa1034230:CDS | 40.0% |
| AGGAGAAGCTTGATGAGTTT+AGG | + | chr7_1:69662084-69662103 | Msa1034230:CDS | 40.0% | |
| AGAATTGTGTGTATTGGAGC+AGG | + | chr7_1:69662140-69662159 | Msa1034230:CDS | 40.0% | |
| ATCAGAATATGGAGAAGAGC+AGG | + | chr7_1:69662230-69662249 | Msa1034230:CDS | 40.0% | |
| !! | TTGAAGCAAGACTTGGTGAT+AGG | + | chr7_1:69662357-69662376 | Msa1034230:CDS | 40.0% |
| GGAGTTACAATATGAGGAAC+AGG | - | chr7_1:69662626-69662645 | None:intergenic | 40.0% | |
| CTTGCAAAGGCAAACAGAAA+TGG | - | chr7_1:69662687-69662706 | None:intergenic | 40.0% | |
| CATTTCTGTTTGCCTTTGCA+AGG | + | chr7_1:69662685-69662704 | Msa1034230:intron | 40.0% | |
| GGTTAATGAATTAACGTCGG+TGG | + | chr7_1:69662769-69662788 | Msa1034230:intron | 40.0% | |
| TCAGATATCAGTTGCCCTAT+TGG | - | chr7_1:69662915-69662934 | None:intergenic | 40.0% | |
| AGTGAAGAATGAGGGATGAA+AGG | - | chr7_1:69663237-69663256 | None:intergenic | 40.0% | |
| TATGCCAATGCTCGAATTTG+TGG | + | chr7_1:69663350-69663369 | Msa1034230:CDS | 40.0% | |
| GAATTTGTGGAGCTGAGAAA+TGG | + | chr7_1:69663363-69663382 | Msa1034230:CDS | 40.0% | |
| AATGTCTATGCAATTGGAGC+TGG | + | chr7_1:69663479-69663498 | Msa1034230:CDS | 40.0% | |
| ! | TATGCAGCAGCATTGGAATG+TGG | - | chr7_1:69661778-69661797 | None:intergenic | 45.0% |
| !!! | TGCTTGGGGAAGTGTTTTTG+CGG | + | chr7_1:69662163-69662182 | Msa1034230:CDS | 45.0% |
| ATCTCACGAGTTTCGGTTGA+AGG | - | chr7_1:69662515-69662534 | None:intergenic | 45.0% | |
| TCACGTCACGTCCAAATTAG+TGG | + | chr7_1:69662748-69662767 | Msa1034230:intron | 45.0% | |
| TGCATTGCAAATTCGACAGC+TGG | + | chr7_1:69663260-69663279 | Msa1034230:intron | 45.0% | |
| AGCTCCACAAATTCGAGCAT+TGG | - | chr7_1:69663357-69663376 | None:intergenic | 45.0% | |
| TTTGTGGAGCTGAGAAATGG+AGG | + | chr7_1:69663366-69663385 | Msa1034230:CDS | 45.0% | |
| TAGTGACCTTGTCACACATG+AGG | + | chr7_1:69663439-69663458 | Msa1034230:CDS | 45.0% | |
| CTTGTCACACATGAGGTCAT+GGG | + | chr7_1:69663446-69663465 | Msa1034230:CDS | 45.0% | |
| CAGGGGAGTGAATAAACATG+TGG | - | chr7_1:69663601-69663620 | None:intergenic | 45.0% | |
| ! | TATGCAGCAGCATTGGAATG+TGG | - | chr7_1:69661778-69661797 | None:intergenic | 45.0% |
| !!! | TGCTTGGGGAAGTGTTTTTG+CGG | + | chr7_1:69662163-69662182 | Msa1034230:CDS | 45.0% |
| ATCTCACGAGTTTCGGTTGA+AGG | - | chr7_1:69662515-69662534 | None:intergenic | 45.0% | |
| TCACGTCACGTCCAAATTAG+TGG | + | chr7_1:69662748-69662767 | Msa1034230:intron | 45.0% | |
| TGCATTGCAAATTCGACAGC+TGG | + | chr7_1:69663260-69663279 | Msa1034230:intron | 45.0% | |
| AGCTCCACAAATTCGAGCAT+TGG | - | chr7_1:69663357-69663376 | None:intergenic | 45.0% | |
| TTTGTGGAGCTGAGAAATGG+AGG | + | chr7_1:69663366-69663385 | Msa1034230:CDS | 45.0% | |
| TAGTGACCTTGTCACACATG+AGG | + | chr7_1:69663439-69663458 | Msa1034230:CDS | 45.0% | |
| CTTGTCACACATGAGGTCAT+GGG | + | chr7_1:69663446-69663465 | Msa1034230:CDS | 45.0% | |
| CAGGGGAGTGAATAAACATG+TGG | - | chr7_1:69663601-69663620 | None:intergenic | 45.0% | |
| TGTGTATTGGAGCAGGTGCT+TGG | + | chr7_1:69662147-69662166 | Msa1034230:CDS | 50.0% | |
| GTGTATTGGAGCAGGTGCTT+GGG | + | chr7_1:69662148-69662167 | Msa1034230:CDS | 50.0% | |
| TGTATTGGAGCAGGTGCTTG+GGG | + | chr7_1:69662149-69662168 | Msa1034230:CDS | 50.0% | |
| CCATGACCTCATGTGTGACA+AGG | - | chr7_1:69663448-69663467 | None:intergenic | 50.0% | |
| CCTTGTCACACATGAGGTCA+TGG | + | chr7_1:69663445-69663464 | Msa1034230:CDS | 50.0% | |
| TAGCCGGAGACAGGCATAAT+CGG | - | chr7_1:69663714-69663733 | None:intergenic | 50.0% | |
| TGTGTATTGGAGCAGGTGCT+TGG | + | chr7_1:69662147-69662166 | Msa1034230:CDS | 50.0% | |
| GTGTATTGGAGCAGGTGCTT+GGG | + | chr7_1:69662148-69662167 | Msa1034230:CDS | 50.0% | |
| TGTATTGGAGCAGGTGCTTG+GGG | + | chr7_1:69662149-69662168 | Msa1034230:CDS | 50.0% | |
| CCATGACCTCATGTGTGACA+AGG | - | chr7_1:69663448-69663467 | None:intergenic | 50.0% | |
| CCTTGTCACACATGAGGTCA+TGG | + | chr7_1:69663445-69663464 | Msa1034230:CDS | 50.0% | |
| TAGCCGGAGACAGGCATAAT+CGG | - | chr7_1:69663714-69663733 | None:intergenic | 50.0% | |
| ! | TTCGACAGCTGGAGTGCCTA+TGG | + | chr7_1:69663271-69663290 | Msa1034230:intron | 55.0% |
| GTCACACATGAGGTCATGGG+TGG | + | chr7_1:69663449-69663468 | Msa1034230:CDS | 55.0% | |
| CAGCCGATTATGCCTGTCTC+CGG | + | chr7_1:69663708-69663727 | Msa1034230:intron | 55.0% | |
| TACTGCAGCCACACTGTAGC+CGG | - | chr7_1:69663730-69663749 | None:intergenic | 55.0% | |
| ! | TTCGACAGCTGGAGTGCCTA+TGG | + | chr7_1:69663271-69663290 | Msa1034230:intron | 55.0% |
| GTCACACATGAGGTCATGGG+TGG | + | chr7_1:69663449-69663468 | Msa1034230:CDS | 55.0% | |
| CAGCCGATTATGCCTGTCTC+CGG | + | chr7_1:69663708-69663727 | Msa1034230:intron | 55.0% | |
| TACTGCAGCCACACTGTAGC+CGG | - | chr7_1:69663730-69663749 | None:intergenic | 55.0% | |
| GCCTGTCTCCGGCTACAGTG+TGG | + | chr7_1:69663719-69663738 | Msa1034230:intron | 65.0% | |
| GCCACACTGTAGCCGGAGAC+AGG | - | chr7_1:69663723-69663742 | None:intergenic | 65.0% | |
| GCCTGTCTCCGGCTACAGTG+TGG | + | chr7_1:69663719-69663738 | Msa1034230:intron | 65.0% | |
| GCCACACTGTAGCCGGAGAC+AGG | - | chr7_1:69663723-69663742 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 69661765 | 69663771 | 69661765 | ID=Msa1034230;Name=Msa1034230 |
| chr7_1 | mRNA | 69661765 | 69663771 | 69661765 | ID=Msa1034230-mRNA-1;Parent=Msa1034230;Name=Msa1034230-mRNA-1;_AED=0.07;_eAED=0.07;_QI=264|0.5|0.33|0.66|1|1|3|0|298 |
| chr7_1 | exon | 69661765 | 69662668 | 69661765 | ID=Msa1034230-mRNA-1:exon:16437;Parent=Msa1034230-mRNA-1 |
| chr7_1 | exon | 69663279 | 69663500 | 69663279 | ID=Msa1034230-mRNA-1:exon:16438;Parent=Msa1034230-mRNA-1 |
| chr7_1 | exon | 69663737 | 69663771 | 69663737 | ID=Msa1034230-mRNA-1:exon:16439;Parent=Msa1034230-mRNA-1 |
| chr7_1 | five_prime_UTR | 69661765 | 69662028 | 69661765 | ID=Msa1034230-mRNA-1:five_prime_utr;Parent=Msa1034230-mRNA-1 |
| chr7_1 | CDS | 69662029 | 69662668 | 69662029 | ID=Msa1034230-mRNA-1:cds;Parent=Msa1034230-mRNA-1 |
| chr7_1 | CDS | 69663279 | 69663500 | 69663279 | ID=Msa1034230-mRNA-1:cds;Parent=Msa1034230-mRNA-1 |
| chr7_1 | CDS | 69663737 | 69663771 | 69663737 | ID=Msa1034230-mRNA-1:cds;Parent=Msa1034230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
