Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108720 | XP_013449158.1 | 95.964 | 446 | 16 | 1 | 1 | 444 | 1 | 446 | 0.0 | 889 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108720 | sp|P48621|FAD3C_SOYBN | 78.728 | 456 | 82 | 4 | 1 | 444 | 1 | 453 | 0.0 | 709 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108720 | A0A072UBF9 | 95.964 | 446 | 16 | 1 | 1 | 444 | 1 | 446 | 0.0 | 889 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004480 | Msa1108720 | 0.835395 | 1.720810e-56 | -8.615850e-47 |
| Msa0012710 | Msa1108720 | 0.800119 | 1.673482e-48 | -8.615850e-47 |
| Msa0030480 | Msa1108720 | 0.817526 | 3.150800e-52 | -8.615850e-47 |
| Msa0030530 | Msa1108720 | 0.802131 | 6.489272e-49 | -8.615850e-47 |
| Msa0060070 | Msa1108720 | 0.830879 | 2.290596e-55 | -8.615850e-47 |
| Msa0064140 | Msa1108720 | 0.807517 | 4.862950e-50 | -8.615850e-47 |
| Msa0071480 | Msa1108720 | 0.845780 | 3.279727e-59 | -8.615850e-47 |
| Msa0081940 | Msa1108720 | 0.819729 | 9.969330e-53 | -8.615850e-47 |
| Msa0082050 | Msa1108720 | 0.818760 | 1.656666e-52 | -8.615850e-47 |
| Msa0092410 | Msa1108720 | 0.805100 | 1.570975e-49 | -8.615850e-47 |
| Msa0101240 | Msa1108720 | 0.826749 | 2.287051e-54 | -8.615850e-47 |
| Msa0106530 | Msa1108720 | 0.805448 | 1.328685e-49 | -8.615850e-47 |
| Msa0112270 | Msa1108720 | 0.802312 | 5.954868e-49 | -8.615850e-47 |
| Msa0119440 | Msa1108720 | 0.858505 | 7.866467e-63 | -8.615850e-47 |
| Msa0614380 | Msa1108720 | 0.808441 | 3.092459e-50 | -8.615850e-47 |
| Msa0724370 | Msa1108720 | 0.800123 | 1.670566e-48 | -8.615850e-47 |
| Msa0739540 | Msa1108720 | 0.801495 | 8.764587e-49 | -8.615850e-47 |
| Msa0748660 | Msa1108720 | 0.830487 | 2.857439e-55 | -8.615850e-47 |
| Msa0758250 | Msa1108720 | 0.844515 | 7.207260e-59 | -8.615850e-47 |
| Msa0769720 | Msa1108720 | 0.827565 | 1.458572e-54 | -8.615850e-47 |
| Msa0779260 | Msa1108720 | 0.805509 | 1.289663e-49 | -8.615850e-47 |
| Msa0794210 | Msa1108720 | 0.810501 | 1.117379e-50 | -8.615850e-47 |
| Msa0799620 | Msa1108720 | 0.804173 | 2.453233e-49 | -8.615850e-47 |
| Msa0807680 | Msa1108720 | 0.803651 | 3.148368e-49 | -8.615850e-47 |
| Msa0128430 | Msa1108720 | 0.830396 | 3.007684e-55 | -8.615850e-47 |
| Msa0136630 | Msa1108720 | 0.832765 | 7.843670e-56 | -8.615850e-47 |
| Msa0151220 | Msa1108720 | 0.837427 | 5.232682e-57 | -8.615850e-47 |
| Msa0152560 | Msa1108720 | 0.810648 | 1.038390e-50 | -8.615850e-47 |
| Msa0155210 | Msa1108720 | 0.803533 | 3.331719e-49 | -8.615850e-47 |
| Msa0162690 | Msa1108720 | 0.841664 | 4.141900e-58 | -8.615850e-47 |
| Msa0179100 | Msa1108720 | 0.844739 | 6.271940e-59 | -8.615850e-47 |
| Msa0187310 | Msa1108720 | 0.819554 | 1.092579e-52 | -8.615850e-47 |
| Msa0213430 | Msa1108720 | 0.812087 | 5.056945e-51 | -8.615850e-47 |
| Msa0224130 | Msa1108720 | 0.807228 | 5.601445e-50 | -8.615850e-47 |
| Msa0364790 | Msa1108720 | 0.824139 | 9.491840e-54 | -8.615850e-47 |
| Msa0380600 | Msa1108720 | 0.849457 | 3.193626e-60 | -8.615850e-47 |
| Msa0403490 | Msa1108720 | 0.823550 | 1.303920e-53 | -8.615850e-47 |
| Msa0408340 | Msa1108720 | 0.838670 | 2.505447e-57 | -8.615850e-47 |
| Msa0418400 | Msa1108720 | 0.817650 | 2.953468e-52 | -8.615850e-47 |
| Msa0430240 | Msa1108720 | 0.853453 | 2.365817e-61 | -8.615850e-47 |
| Msa0437070 | Msa1108720 | 0.839973 | 1.150195e-57 | -8.615850e-47 |
| Msa0472710 | Msa1108720 | 0.821905 | 3.148432e-53 | -8.615850e-47 |
| Msa0472720 | Msa1108720 | 0.801525 | 8.642691e-49 | -8.615850e-47 |
| Msa0472770 | Msa1108720 | 0.834373 | 3.111123e-56 | -8.615850e-47 |
| Msa0482280 | Msa1108720 | 0.806363 | 8.532784e-50 | -8.615850e-47 |
| Msa1024690 | Msa1108720 | 0.907925 | 2.990881e-81 | -8.615850e-47 |
| Msa1034700 | Msa1108720 | 0.818415 | 1.983456e-52 | -8.615850e-47 |
| Msa1043120 | Msa1108720 | 0.850195 | 1.986616e-60 | -8.615850e-47 |
| Msa1043330 | Msa1108720 | 0.805747 | 1.149720e-49 | -8.615850e-47 |
| Msa1063370 | Msa1108720 | 0.972744 | 2.875221e-135 | -8.615850e-47 |
| Msa1063410 | Msa1108720 | 0.945824 | 1.478029e-104 | -8.615850e-47 |
| Msa1074540 | Msa1108720 | 0.824373 | 8.359790e-54 | -8.615850e-47 |
| Msa1077060 | Msa1108720 | 0.821540 | 3.823891e-53 | -8.615850e-47 |
| Msa0259440 | Msa1108720 | 0.851588 | 8.049966e-61 | -8.615850e-47 |
| Msa0259580 | Msa1108720 | 0.843348 | 1.481159e-58 | -8.615850e-47 |
| Msa0260530 | Msa1108720 | 0.816781 | 4.634105e-52 | -8.615850e-47 |
| Msa0265270 | Msa1108720 | 0.804681 | 1.922287e-49 | -8.615850e-47 |
| Msa0284240 | Msa1108720 | 0.808611 | 2.843952e-50 | -8.615850e-47 |
| Msa0305620 | Msa1108720 | 0.863984 | 1.684113e-64 | -8.615850e-47 |
| Msa0358110 | Msa1108720 | 0.819831 | 9.448403e-53 | -8.615850e-47 |
| Msa1108720 | Msa1122790 | 0.826784 | 2.242678e-54 | -8.615850e-47 |
| Msa1108720 | Msa1123720 | 0.832140 | 1.120364e-55 | -8.615850e-47 |
| Msa1108720 | Msa1152410 | 0.968660 | 5.396073e-129 | -8.615850e-47 |
| Msa1108720 | Msa1156820 | 0.832119 | 1.133826e-55 | -8.615850e-47 |
| Msa1108720 | Msa1163880 | 0.818634 | 1.769624e-52 | -8.615850e-47 |
| Msa1108720 | Msa1209190 | 0.818641 | 1.763224e-52 | -8.615850e-47 |
| Msa1108720 | Msa1209860 | 0.816847 | 4.477027e-52 | -8.615850e-47 |
| Msa1108720 | Msa1214170 | 0.832617 | 8.534611e-56 | -8.615850e-47 |
| Msa1108720 | Msa1220000 | 0.805032 | 1.623786e-49 | -8.615850e-47 |
| Msa1108720 | Msa1258670 | 0.810797 | 9.642228e-51 | -8.615850e-47 |
| Msa1108720 | Msa1260060 | 0.812347 | 4.438699e-51 | -8.615850e-47 |
| Msa1108720 | Msa1260680 | 0.806066 | 9.850838e-50 | -8.615850e-47 |
| Msa1108720 | Msa1280170 | 0.807374 | 5.214929e-50 | -8.615850e-47 |
| Msa1108720 | Msa1285200 | 0.846281 | 2.396396e-59 | -8.615850e-47 |
| Msa1108720 | Msa1350700 | 0.800950 | 1.133333e-48 | -8.615850e-47 |
| Msa1108720 | Msa1360020 | 0.829843 | 4.102669e-55 | -8.615850e-47 |
| Msa1108720 | Msa1360420 | 0.832733 | 7.987837e-56 | -8.615850e-47 |
| Msa1108720 | Msa1361250 | 0.805910 | 1.062320e-49 | -8.615850e-47 |
| Msa1108720 | Msa1367530 | 0.801992 | 6.931233e-49 | -8.615850e-47 |
| Msa1108720 | Msa1399260 | 0.810942 | 8.969910e-51 | -8.615850e-47 |
| Msa1108720 | Msa1420930 | 0.804702 | 1.902606e-49 | -8.615850e-47 |
| Msa1108720 | Msa1421900 | 0.831016 | 2.119770e-55 | -8.615850e-47 |
| Msa1108720 | Msa1430550 | 0.801413 | 9.109724e-49 | -8.615850e-47 |
| Msa0500400 | Msa1108720 | 0.804499 | 2.097986e-49 | -8.615850e-47 |
| Msa0524330 | Msa1108720 | 0.803277 | 3.764914e-49 | -8.615850e-47 |
| Msa0542470 | Msa1108720 | 0.801023 | 1.094953e-48 | -8.615850e-47 |
| Msa0542530 | Msa1108720 | 0.803284 | 3.752072e-49 | -8.615850e-47 |
| Msa0569780 | Msa1108720 | 0.803053 | 4.188986e-49 | -8.615850e-47 |
| Msa0583670 | Msa1108720 | 0.811908 | 5.532770e-51 | -8.615850e-47 |
| Msa0860250 | Msa1108720 | 0.866311 | 3.127594e-65 | -8.615850e-47 |
| Msa0865970 | Msa1108720 | 0.841324 | 5.092710e-58 | -8.615850e-47 |
| Msa0866070 | Msa1108720 | 0.839595 | 1.442407e-57 | -8.615850e-47 |
| Msa0968050 | Msa1108720 | 0.845010 | 5.301740e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108720 | MtrunA17_Chr7g0242601 | 95.964 | 446 | 16 | 1 | 1 | 444 | 1 | 446 | 0.0 | 889 |
| Msa1108720 | MtrunA17_Chr4g0006241 | 75.000 | 448 | 100 | 3 | 1 | 444 | 1 | 440 | 0.0 | 668 |
| Msa1108720 | MtrunA17_Chr5g0430241 | 71.225 | 351 | 101 | 0 | 87 | 437 | 35 | 385 | 0.0 | 555 |
| Msa1108720 | MtrunA17_Chr3g0105171 | 68.717 | 374 | 111 | 2 | 73 | 444 | 16 | 385 | 0.0 | 530 |
| Msa1108720 | MtrunA17_Chr7g0258651 | 37.313 | 335 | 189 | 7 | 80 | 396 | 15 | 346 | 1.67e-63 | 209 |
| Msa1108720 | MtrunA17_Chr1g0175301 | 35.714 | 336 | 197 | 6 | 76 | 395 | 13 | 345 | 2.40e-63 | 209 |
| Msa1108720 | MtrunA17_Chr1g0210511 | 37.607 | 234 | 135 | 4 | 172 | 396 | 10 | 241 | 7.28e-41 | 147 |
| Msa1108720 | MtrunA17_Chr4g0074071 | 28.443 | 334 | 223 | 8 | 69 | 397 | 75 | 397 | 2.54e-32 | 127 |
| Msa1108720 | MtrunA17_Chr2g0305881 | 37.288 | 118 | 65 | 3 | 91 | 203 | 95 | 208 | 5.26e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108720 | AT5G05580.1 | 69.977 | 443 | 120 | 3 | 1 | 440 | 1 | 433 | 0.0 | 655 |
| Msa1108720 | AT3G11170.1 | 69.955 | 446 | 126 | 3 | 1 | 442 | 1 | 442 | 0.0 | 649 |
| Msa1108720 | AT5G05580.2 | 70.876 | 388 | 100 | 4 | 1 | 385 | 1 | 378 | 0.0 | 573 |
| Msa1108720 | AT2G29980.1 | 65.365 | 384 | 128 | 2 | 63 | 444 | 4 | 384 | 0.0 | 525 |
| Msa1108720 | AT2G29980.2 | 63.636 | 275 | 97 | 1 | 63 | 337 | 4 | 275 | 1.09e-125 | 366 |
| Msa1108720 | AT3G12120.1 | 35.613 | 351 | 202 | 9 | 63 | 396 | 2 | 345 | 2.54e-65 | 214 |
| Msa1108720 | AT3G12120.2 | 35.613 | 351 | 202 | 9 | 63 | 396 | 2 | 345 | 2.54e-65 | 214 |
| Msa1108720 | AT4G30950.1 | 29.226 | 349 | 220 | 11 | 59 | 394 | 61 | 395 | 1.60e-32 | 128 |
Find 122 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCATTACTCATGCTTTA+TGG | 0.109554 | 7_3:-51947003 | Msa1108720:CDS |
| TAACTATGTGACCACATTTA+AGG | 0.150984 | 7_3:+51945569 | None:intergenic |
| GGATGGTTTGGCCTCTTTAT+TGG | 0.161417 | 7_3:-51948304 | Msa1108720:CDS |
| CTGCTCAAGGAACTATGTTT+TGG | 0.165280 | 7_3:-51948280 | Msa1108720:CDS |
| ACAAAACCTGTTCTTGGTTT+TGG | 0.203188 | 7_3:+51948671 | None:intergenic |
| GATGGTTTGGCCTCTTTATT+GGG | 0.236131 | 7_3:-51948303 | Msa1108720:CDS |
| AACTAACTTGATCATAATTT+AGG | 0.238459 | 7_3:+51945680 | None:intergenic |
| TTCTTAATAATTGGATGGTT+TGG | 0.246549 | 7_3:-51948316 | Msa1108720:CDS |
| GGAAGAGGAGCTGATTTCTT+TGG | 0.246608 | 7_3:+51945998 | None:intergenic |
| ACTACTATTGACCGCGATTA+TGG | 0.247284 | 7_3:-51946247 | Msa1108720:CDS |
| ATTTGATGAGTTATGGCTTT+TGG | 0.259436 | 7_3:+51948973 | None:intergenic |
| GTTTGGTCCAAGTGAGAAAA+AGG | 0.260081 | 7_3:-51947100 | Msa1108720:CDS |
| GAATCAGAAACAAAATATTT+TGG | 0.260418 | 7_3:+51948784 | None:intergenic |
| TTTCAACATGGCCATGATTC+TGG | 0.264541 | 7_3:+51947665 | None:intergenic |
| ACCTTATTGGAGAATTTATA+AGG | 0.270680 | 7_3:-51945970 | Msa1108720:CDS |
| ACCAGTCTTCCCAGGACTTC+TGG | 0.274716 | 7_3:+51947149 | None:intergenic |
| CTTATATCAGCCAATGTAAA+TGG | 0.296570 | 7_3:+51948443 | None:intergenic |
| AGAATGTGTTGGTGGGTATA+AGG | 0.298424 | 7_3:-51945764 | Msa1108720:three_prime_UTR |
| GACACAACAAAACCTGTTCT+TGG | 0.307873 | 7_3:+51948665 | None:intergenic |
| TCCTTATAAATTCTCCAATA+AGG | 0.310337 | 7_3:+51945969 | None:intergenic |
| AAATTTAGCCTTTGAATTGT+TGG | 0.315210 | 7_3:+51948643 | None:intergenic |
| AATCATGACCAAGAACAAAA+AGG | 0.317453 | 7_3:+51948255 | None:intergenic |
| CATCCCAGCAGTGACTTGTT+TGG | 0.326413 | 7_3:-51947117 | Msa1108720:CDS |
| TCAATTCTTGTTCCCTATCA+TGG | 0.336107 | 7_3:-51947818 | Msa1108720:CDS |
| TCTTAAATTTCATTCTGATT+TGG | 0.337793 | 7_3:+51945868 | None:intergenic |
| AATGAAGAAAATTGTGCGTT+TGG | 0.345211 | 7_3:+51948949 | None:intergenic |
| CAAGTTGCCATGGAAGATTA+AGG | 0.367176 | 7_3:+51948737 | None:intergenic |
| CTTAATCTTCCATGGCAACT+TGG | 0.368742 | 7_3:-51948736 | Msa1108720:exon |
| CCTAATCTTAACAGTGTTGT+TGG | 0.371102 | 7_3:-51947857 | Msa1108720:CDS |
| AGTCACTGCTGGGATGGAAA+TGG | 0.376732 | 7_3:+51947124 | None:intergenic |
| GCTATGGTGGCATTGCTTGT+AGG | 0.377173 | 7_3:-51947048 | Msa1108720:CDS |
| CCAACAACACTGTTAAGATT+AGG | 0.378693 | 7_3:+51947857 | None:intergenic |
| TAAAGCATGAGTAATGGAAT+TGG | 0.386548 | 7_3:+51947006 | None:intergenic |
| TCTTTCACCCAACAATGCTT+TGG | 0.388930 | 7_3:+51948410 | None:intergenic |
| TGATAACTTCTACTGCTTGT+TGG | 0.390054 | 7_3:-51947074 | Msa1108720:CDS |
| ATGCAGTGGGCCAGAAGTCC+TGG | 0.395799 | 7_3:-51947159 | Msa1108720:intron |
| CACTAATTTCAGAATCTGTT+TGG | 0.396613 | 7_3:+51945897 | None:intergenic |
| CAGCAATTCCAAAGCATTGT+TGG | 0.398283 | 7_3:-51948418 | Msa1108720:CDS |
| CATAACATACCATCCATGAT+AGG | 0.399195 | 7_3:+51947805 | None:intergenic |
| TGAATGTGAGTACTCCTTTG+AGG | 0.406114 | 7_3:-51948535 | Msa1108720:CDS |
| ACTTCATAAAAGAAAGTGTT+TGG | 0.411656 | 7_3:-51945797 | Msa1108720:three_prime_UTR |
| GTGGCATTGCTTGTAGGATT+GGG | 0.423209 | 7_3:-51947042 | Msa1108720:CDS |
| CCCAACTCACAGAATTCAAA+AGG | 0.425477 | 7_3:-51948898 | Msa1108720:five_prime_UTR |
| CAAACAGATTCTGAAATTAG+TGG | 0.428433 | 7_3:-51945896 | Msa1108720:CDS |
| GTAGGATTGGGATTTACAAT+TGG | 0.429127 | 7_3:-51947030 | Msa1108720:CDS |
| ATTGTTGGGTGAAAGATTCA+TGG | 0.438978 | 7_3:-51948403 | Msa1108720:CDS |
| GAGGCAGCAAGGCCTGTGTT+TGG | 0.442475 | 7_3:-51946037 | Msa1108720:CDS |
| GAATGTGAGTACTCCTTTGA+GGG | 0.443614 | 7_3:-51948534 | Msa1108720:CDS |
| TAGGAATGGAGCTATCTTAG+AGG | 0.444853 | 7_3:-51946277 | Msa1108720:CDS |
| TACTGCTTGTTGGACTGCTA+TGG | 0.447734 | 7_3:-51947064 | Msa1108720:CDS |
| GTTTGGAATTTGATGAGTTA+TGG | 0.448091 | 7_3:+51948966 | None:intergenic |
| AGGTGATAGTGTGGAATTTG+AGG | 0.461549 | 7_3:+51946169 | None:intergenic |
| GTCACTGCTGGGATGGAAAT+GGG | 0.462406 | 7_3:+51947125 | None:intergenic |
| GGTGGCATTGCTTGTAGGAT+TGG | 0.463654 | 7_3:-51947043 | Msa1108720:CDS |
| GTTGGGTTGAAGAAAGTTGA+TGG | 0.464173 | 7_3:+51948915 | None:intergenic |
| AACTTTATGAGAAGTTCAAA+AGG | 0.464571 | 7_3:+51945840 | None:intergenic |
| GCCAGAAGTCCTGGGAAGAC+TGG | 0.465518 | 7_3:-51947150 | Msa1108720:CDS |
| AATTGAACAAGAACATGAAC+AGG | 0.467947 | 7_3:-51948504 | Msa1108720:CDS |
| AGCAATTCCAAAGCATTGTT+GGG | 0.468648 | 7_3:-51948417 | Msa1108720:CDS |
| ACAAGAACATGAACAGGAAC+AGG | 0.468800 | 7_3:-51948498 | Msa1108720:CDS |
| TATACAGGAGAATTAGTCAT+AGG | 0.472631 | 7_3:-51947696 | Msa1108720:intron |
| GTATTTCCAAAACCAAGAAC+AGG | 0.474801 | 7_3:-51948677 | Msa1108720:CDS |
| CCTCTTTATTGGGCTGCTCA+AGG | 0.476332 | 7_3:-51948293 | Msa1108720:CDS |
| TGGACCAAACAAGTCACTGC+TGG | 0.478611 | 7_3:+51947113 | None:intergenic |
| GTGACTTACTTGCACCATCA+TGG | 0.478921 | 7_3:-51946845 | Msa1108720:CDS |
| TATTTGCTAAATTAGCACTT+TGG | 0.479436 | 7_3:-51945654 | Msa1108720:three_prime_UTR |
| AATTCTCCAATAAGGTGAAA+AGG | 0.487740 | 7_3:+51945977 | None:intergenic |
| AATAACATTCACCATGACAT+TGG | 0.490823 | 7_3:-51946217 | Msa1108720:CDS |
| CTGTGACCCTTAATCTTCCA+TGG | 0.490908 | 7_3:-51948744 | Msa1108720:exon |
| AAGTTGCCATGGAAGATTAA+GGG | 0.493344 | 7_3:+51948738 | None:intergenic |
| TTAATCTTCCATGGCAACTT+GGG | 0.497357 | 7_3:-51948735 | Msa1108720:exon |
| GAGATGAAACTTACAACATA+CGG | 0.502661 | 7_3:+51946976 | None:intergenic |
| CTATTGACCGCGATTATGGA+TGG | 0.507864 | 7_3:-51946243 | Msa1108720:CDS |
| GAGTTACCAGAGTTTGATCC+TGG | 0.511019 | 7_3:-51948476 | Msa1108720:CDS |
| GGTGATAGTGTGGAATTTGA+GGG | 0.516178 | 7_3:+51946170 | None:intergenic |
| GGATATGCAAGCAATGGAAA+AGG | 0.519991 | 7_3:+51947282 | None:intergenic |
| AGGACTCATCACCAGAATCA+TGG | 0.529486 | 7_3:-51947676 | Msa1108720:CDS |
| TGTTGTGTCCAACAATTCAA+AGG | 0.531174 | 7_3:-51948651 | Msa1108720:CDS |
| AAATGACGAGTCTTGGCATC+CGG | 0.531545 | 7_3:-51947644 | Msa1108720:intron |
| GATCATTATGTTAGTGACAC+TGG | 0.532354 | 7_3:-51945935 | Msa1108720:CDS |
| TTCACCACCACCATTTACAT+TGG | 0.537892 | 7_3:-51948453 | Msa1108720:CDS |
| CCTTGAGCAGCCCAATAAAG+AGG | 0.538687 | 7_3:+51948293 | None:intergenic |
| TTCTTGTTCCCTATCATGGA+TGG | 0.540256 | 7_3:-51947814 | Msa1108720:intron |
| TGATAAAACCCAAGTTGCCA+TGG | 0.540293 | 7_3:+51948727 | None:intergenic |
| TTTGAAAAGTTCCTTAAATG+TGG | 0.540341 | 7_3:-51945580 | Msa1108720:three_prime_UTR |
| GACAAATTACCTTGGTATCG+TGG | 0.541472 | 7_3:-51946815 | Msa1108720:CDS |
| ATGTTGAAAATGACGAGTCT+TGG | 0.543891 | 7_3:-51947651 | Msa1108720:CDS |
| CCAATAAGGTGAAAAGGAAG+AGG | 0.544622 | 7_3:+51945983 | None:intergenic |
| AAATGGGAACCAGTCTTCCC+AGG | 0.559704 | 7_3:+51947141 | None:intergenic |
| TCAATTGAATCAACCCTCAA+AGG | 0.560368 | 7_3:+51948521 | None:intergenic |
| TCATAAAAGAAAGTGTTTGG+TGG | 0.560930 | 7_3:-51945794 | Msa1108720:three_prime_UTR |
| ACTCCATAAAGCATGAGTAA+TGG | 0.560961 | 7_3:+51947000 | None:intergenic |
| CAAACAAGTCACTGCTGGGA+TGG | 0.566530 | 7_3:+51947118 | None:intergenic |
| GGACCAAACAAGTCACTGCT+GGG | 0.570996 | 7_3:+51947114 | None:intergenic |
| GTAAATGGTGGTGGTGAACC+AGG | 0.571749 | 7_3:+51948458 | None:intergenic |
| TTTAAGGAGAAGAGAAAATG+GGG | 0.572531 | 7_3:-51948560 | Msa1108720:CDS |
| GTTTGCAGACTGAGGCAGCA+AGG | 0.573397 | 7_3:-51946048 | Msa1108720:intron |
| TGCTTGTTGGACTGCTATGG+TGG | 0.574412 | 7_3:-51947061 | Msa1108720:CDS |
| TTTGGAAATACTGGAGCAAG+TGG | 0.574925 | 7_3:+51948689 | None:intergenic |
| TGCAGTGGGCCAGAAGTCCT+GGG | 0.574948 | 7_3:-51947158 | Msa1108720:intron |
| ACTTTATGAGAAGTTCAAAA+GGG | 0.575431 | 7_3:+51945841 | None:intergenic |
| GAAATTAAAGAATGTGTTGG+TGG | 0.580911 | 7_3:-51945772 | Msa1108720:three_prime_UTR |
| TACACAGGATATGCAAGCAA+TGG | 0.581321 | 7_3:+51947276 | None:intergenic |
| GTGGAAATTAAAGAATGTGT+TGG | 0.581436 | 7_3:-51945775 | Msa1108720:three_prime_UTR |
| AGATACTCACAGCTTCAACT+AGG | 0.590574 | 7_3:+51946149 | None:intergenic |
| AGTGTGGAATTTGAGGGAAA+AGG | 0.599823 | 7_3:+51946176 | None:intergenic |
| TTGTAATATTCTCCAAACAC+AGG | 0.600552 | 7_3:+51946025 | None:intergenic |
| ATAACATACCATCCATGATA+GGG | 0.602383 | 7_3:+51947806 | None:intergenic |
| GAATGGAGCTATCTTAGAGG+TGG | 0.607399 | 7_3:-51946274 | Msa1108720:CDS |
| CCAACTCACAGAATTCAAAA+GGG | 0.608267 | 7_3:-51948897 | Msa1108720:five_prime_UTR |
| ATTACCTTGGTATCGTGGAA+AGG | 0.611215 | 7_3:-51946810 | Msa1108720:intron |
| GTCATGAAGACAAATTACCT+TGG | 0.612404 | 7_3:-51946823 | Msa1108720:CDS |
| GGTGAACCAGGATCAAACTC+TGG | 0.614380 | 7_3:+51948470 | None:intergenic |
| GCTTCAACTAGGTGATAGTG+TGG | 0.622119 | 7_3:+51946160 | None:intergenic |
| TCAGCCAATGTAAATGGTGG+TGG | 0.634606 | 7_3:+51948449 | None:intergenic |
| TGACATGAGTTCCAATGTCA+TGG | 0.641062 | 7_3:+51946206 | None:intergenic |
| AAATAACTTACAAGGTACAC+AGG | 0.642457 | 7_3:+51947261 | None:intergenic |
| AAATTAAAGAATGTGTTGGT+GGG | 0.647464 | 7_3:-51945771 | Msa1108720:three_prime_UTR |
| ATTTGTCTTCATGACCATGA+TGG | 0.654713 | 7_3:+51946831 | None:intergenic |
| AGTACCTTTCCACGATACCA+AGG | 0.662444 | 7_3:+51946806 | None:intergenic |
| ATATCAGCCAATGTAAATGG+TGG | 0.666664 | 7_3:+51948446 | None:intergenic |
| TATTAATCCATCCATAATCG+CGG | 0.702360 | 7_3:+51946236 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATATGTAAACAAAAAT+CGG | + | chr7_3:51948252-51948271 | None:intergenic | 10.0% |
| !!! | TACTTTTAATTTTTTTGCTA+TGG | - | chr7_3:51946582-51946601 | Msa1108720:intron | 15.0% |
| !!! | ACATTTGTATTAGAATTTTA+AGG | + | chr7_3:51947185-51947204 | None:intergenic | 15.0% |
| !! | ATTTGAATATTAATTAGTTC+TGG | - | chr7_3:51947351-51947370 | Msa1108720:intron | 15.0% |
| !! | ATATAAAAAATTCACTTGTT+AGG | + | chr7_3:51948834-51948853 | None:intergenic | 15.0% |
| !!! | ATTGATTATATTTTTCATGA+AGG | - | chr7_3:51948852-51948871 | Msa1108720:five_prime_UTR | 15.0% |
| !! | CAAAAATTGGTCATAAAAAT+TGG | + | chr7_3:51945749-51945768 | None:intergenic | 20.0% |
| !!! | GAATCAGAAACAAAATATTT+TGG | + | chr7_3:51945783-51945802 | None:intergenic | 20.0% |
| !!! | AATTCAAAGGCTAAATTTTT+AGG | - | chr7_3:51945926-51945945 | Msa1108720:CDS | 20.0% |
| !!! | ACCAAAAAGTTTTGATTTTA+AGG | - | chr7_3:51945988-51946007 | Msa1108720:CDS | 20.0% |
| !!! | TCCTTAAAATCAAAACTTTT+TGG | + | chr7_3:51945992-51946011 | None:intergenic | 20.0% |
| !!! | TTTGATTTTGATTGTTGTTT+TGG | - | chr7_3:51946650-51946669 | Msa1108720:intron | 20.0% |
| !! | TTGTAAACGCAATTTAAAAA+AGG | - | chr7_3:51947066-51947085 | Msa1108720:CDS | 20.0% |
| !!! | TTTTAATTTTCATTAGACGT+CGG | - | chr7_3:51947096-51947115 | Msa1108720:CDS | 20.0% |
| !! | AGTATTCTTAAATGAGAAAA+TGG | + | chr7_3:51947146-51947165 | None:intergenic | 20.0% |
| !! | AGAAAAAATATTTAAGAGCT+TGG | - | chr7_3:51947227-51947246 | Msa1108720:intron | 20.0% |
| !! | AAATTCTAGTCAAAATTTGT+AGG | + | chr7_3:51947335-51947354 | None:intergenic | 20.0% |
| !!! | TTAATCTTTATCTGTTGATT+AGG | - | chr7_3:51948268-51948287 | Msa1108720:CDS | 20.0% |
| !! | TCTTAAATTTCATTCTGATT+TGG | + | chr7_3:51948699-51948718 | None:intergenic | 20.0% |
| !! | AACTAACTTGATCATAATTT+AGG | + | chr7_3:51948887-51948906 | None:intergenic | 20.0% |
| ! | GGTGTAAATACTTCAAAAAT+TGG | + | chr7_3:51945762-51945781 | None:intergenic | 25.0% |
| !! | AAATTTAGCCTTTGAATTGT+TGG | + | chr7_3:51945924-51945943 | None:intergenic | 25.0% |
| !!! | ATTTTAAGGAGAAGAGAAAA+TGG | - | chr7_3:51946002-51946021 | Msa1108720:CDS | 25.0% |
| !!! | TTTTAAGGAGAAGAGAAAAT+GGG | - | chr7_3:51946003-51946022 | Msa1108720:CDS | 25.0% |
| !!! | AGAGATGTTGTTATTGTTTT+TGG | - | chr7_3:51946205-51946224 | Msa1108720:CDS | 25.0% |
| !!! | TGTTGTTATTGTTTTTGGTT+TGG | - | chr7_3:51946210-51946229 | Msa1108720:CDS | 25.0% |
| !! | TGCTTTTCTTAATAATTGGA+TGG | - | chr7_3:51946243-51946262 | Msa1108720:CDS | 25.0% |
| ! | TTCTTAATAATTGGATGGTT+TGG | - | chr7_3:51946248-51946267 | Msa1108720:CDS | 25.0% |
| ! | TATGTTTACCTTGATTATAC+AGG | - | chr7_3:51946853-51946872 | Msa1108720:CDS | 25.0% |
| !! | CATGAATTTTCATTAGATGT+CGG | + | chr7_3:51947025-51947044 | None:intergenic | 25.0% |
| !!! | ATATTAATTAGTTCTGGTAG+AGG | - | chr7_3:51947357-51947376 | Msa1108720:intron | 25.0% |
| !! | TTTTCATTGATCAATTAGCA+TGG | - | chr7_3:51947612-51947631 | Msa1108720:intron | 25.0% |
| !!! | ATTAGCATGGTTTTAGTTTT+TGG | - | chr7_3:51947625-51947644 | Msa1108720:intron | 25.0% |
| !! | ATTTAGAGCAAAGTCAAATT+AGG | + | chr7_3:51947670-51947689 | None:intergenic | 25.0% |
| ! | TTCAGTCAAATATCAGATAT+TGG | - | chr7_3:51947824-51947843 | Msa1108720:CDS | 25.0% |
| ! | TATTGGATCAATGTACAATT+GGG | + | chr7_3:51947852-51947871 | None:intergenic | 25.0% |
| ! | TTATTGGATCAATGTACAAT+TGG | + | chr7_3:51947853-51947872 | None:intergenic | 25.0% |
| ! | CTCTATCTTAGTTAAAACAA+TGG | - | chr7_3:51948442-51948461 | Msa1108720:CDS | 25.0% |
| ! | ACCTTATTGGAGAATTTATA+AGG | - | chr7_3:51948594-51948613 | Msa1108720:CDS | 25.0% |
| ! | TCCTTATAAATTCTCCAATA+AGG | + | chr7_3:51948598-51948617 | None:intergenic | 25.0% |
| ! | ACTTTATGAGAAGTTCAAAA+GGG | + | chr7_3:51948726-51948745 | None:intergenic | 25.0% |
| ! | AACTTTATGAGAAGTTCAAA+AGG | + | chr7_3:51948727-51948746 | None:intergenic | 25.0% |
| !! | AAACACTTTCTTTTATGAAG+TGG | + | chr7_3:51948768-51948787 | None:intergenic | 25.0% |
| !!! | ACTTCATAAAAGAAAGTGTT+TGG | - | chr7_3:51948767-51948786 | Msa1108720:intron | 25.0% |
| !! | AAATTAAAGAATGTGTTGGT+GGG | - | chr7_3:51948793-51948812 | Msa1108720:intron | 25.0% |
| !! | TATTTGCTAAATTAGCACTT+TGG | - | chr7_3:51948910-51948929 | Msa1108720:five_prime_UTR | 25.0% |
| ! | ATTTGATGAGTTATGGCTTT+TGG | + | chr7_3:51945594-51945613 | None:intergenic | 30.0% |
| ! | GTTTGGAATTTGATGAGTTA+TGG | + | chr7_3:51945601-51945620 | None:intergenic | 30.0% |
| AATGAAGAAAATTGTGCGTT+TGG | + | chr7_3:51945618-51945637 | None:intergenic | 30.0% | |
| TTTAAGGAGAAGAGAAAATG+GGG | - | chr7_3:51946004-51946023 | Msa1108720:CDS | 30.0% | |
| AATTGAACAAGAACATGAAC+AGG | - | chr7_3:51946060-51946079 | Msa1108720:intron | 30.0% | |
| CTTATATCAGCCAATGTAAA+TGG | + | chr7_3:51946124-51946143 | None:intergenic | 30.0% | |
| !!! | CTGCTGCTTTTCTTAATAAT+TGG | - | chr7_3:51946239-51946258 | Msa1108720:CDS | 30.0% |
| ATCATGACCAAGAACAAAAA+GGG | + | chr7_3:51946311-51946330 | None:intergenic | 30.0% | |
| AATCATGACCAAGAACAAAA+AGG | + | chr7_3:51946312-51946331 | None:intergenic | 30.0% | |
| ! | TTTTTGTTCTTGGTCATGAT+TGG | - | chr7_3:51946311-51946330 | Msa1108720:intron | 30.0% |
| ! | CTTTTAATGATTGTTGTCGA+TGG | - | chr7_3:51946399-51946418 | Msa1108720:intron | 30.0% |
| TTGTCGATGGTAGAAAATAA+CGG | - | chr7_3:51946412-51946431 | Msa1108720:intron | 30.0% | |
| !! | TTTTTGCTATGGTTGACTTT+TGG | - | chr7_3:51946593-51946612 | Msa1108720:intron | 30.0% |
| !! | TTTTGCTATGGTTGACTTTT+GGG | - | chr7_3:51946594-51946613 | Msa1108720:intron | 30.0% |
| !!! | TGTTGTTTTGGAATTTTCAG+TGG | - | chr7_3:51946662-51946681 | Msa1108720:intron | 30.0% |
| ATAACATACCATCCATGATA+GGG | + | chr7_3:51946761-51946780 | None:intergenic | 30.0% | |
| CTAATTCTCCTGTATAATCA+AGG | + | chr7_3:51946864-51946883 | None:intergenic | 30.0% | |
| TATACAGGAGAATTAGTCAT+AGG | - | chr7_3:51946868-51946887 | Msa1108720:CDS | 30.0% | |
| AAATAACTTACAAGGTACAC+AGG | + | chr7_3:51947306-51947325 | None:intergenic | 30.0% | |
| GGCACAATAAATAACTTACA+AGG | + | chr7_3:51947314-51947333 | None:intergenic | 30.0% | |
| ! | TAAAGCATGAGTAATGGAAT+TGG | + | chr7_3:51947561-51947580 | None:intergenic | 30.0% |
| ATTCCATTACTCATGCTTTA+TGG | - | chr7_3:51947561-51947580 | Msa1108720:intron | 30.0% | |
| GAGATGAAACTTACAACATA+CGG | + | chr7_3:51947591-51947610 | None:intergenic | 30.0% | |
| ! | TTGACTTTGCTCTAAATTGA+AGG | - | chr7_3:51947673-51947692 | Msa1108720:CDS | 30.0% |
| ! | AATTGAAGGTTTTTGTGATG+TGG | - | chr7_3:51947687-51947706 | Msa1108720:CDS | 30.0% |
| !!! | TTTTTGGTTTGTAGATGTGT+CGG | - | chr7_3:51947910-51947929 | Msa1108720:intron | 30.0% |
| ATCAATCAAATTTCGATCGT+TGG | - | chr7_3:51947933-51947952 | Msa1108720:intron | 30.0% | |
| CAGTGCAATAAAGTCATATT+TGG | + | chr7_3:51948066-51948085 | None:intergenic | 30.0% | |
| TTAATCCAACAGACGAAATA+TGG | - | chr7_3:51948180-51948199 | Msa1108720:intron | 30.0% | |
| ! | CTTTATCTGTTGATTAGGAA+TGG | - | chr7_3:51948273-51948292 | Msa1108720:CDS | 30.0% |
| TATTAATCCATCCATAATCG+CGG | + | chr7_3:51948331-51948350 | None:intergenic | 30.0% | |
| AATAACATTCACCATGACAT+TGG | - | chr7_3:51948347-51948366 | Msa1108720:CDS | 30.0% | |
| !!! | AGTGATTTGTTTTTTGAGTC+AGG | - | chr7_3:51948471-51948490 | Msa1108720:CDS | 30.0% |
| TTGTAATATTCTCCAAACAC+AGG | + | chr7_3:51948542-51948561 | None:intergenic | 30.0% | |
| AATTCTCCAATAAGGTGAAA+AGG | + | chr7_3:51948590-51948609 | None:intergenic | 30.0% | |
| CACTAATTTCAGAATCTGTT+TGG | + | chr7_3:51948670-51948689 | None:intergenic | 30.0% | |
| !! | CAAACAGATTCTGAAATTAG+TGG | - | chr7_3:51948668-51948687 | Msa1108720:CDS | 30.0% |
| !! | TCATAAAAGAAAGTGTTTGG+TGG | - | chr7_3:51948770-51948789 | Msa1108720:intron | 30.0% |
| GTGGAAATTAAAGAATGTGT+TGG | - | chr7_3:51948789-51948808 | Msa1108720:intron | 30.0% | |
| GAAATTAAAGAATGTGTTGG+TGG | - | chr7_3:51948792-51948811 | Msa1108720:intron | 30.0% | |
| ! | CCTTTTGAATTCTGTGAGTT+GGG | + | chr7_3:51945669-51945688 | None:intergenic | 35.0% |
| CCAACTCACAGAATTCAAAA+GGG | - | chr7_3:51945667-51945686 | Msa1108720:three_prime_UTR | 35.0% | |
| AAGTTGCCATGGAAGATTAA+GGG | + | chr7_3:51945829-51945848 | None:intergenic | 35.0% | |
| TTAATCTTCCATGGCAACTT+GGG | - | chr7_3:51945829-51945848 | Msa1108720:three_prime_UTR | 35.0% | |
| !! | ACTTGGGTTTTATCAGAATG+TGG | - | chr7_3:51945845-51945864 | Msa1108720:three_prime_UTR | 35.0% |
| !!! | GTTCTTGGTTTTGGAAATAC+TGG | + | chr7_3:51945887-51945906 | None:intergenic | 35.0% |
| GTATTTCCAAAACCAAGAAC+AGG | - | chr7_3:51945887-51945906 | Msa1108720:CDS | 35.0% | |
| ! | ACAAAACCTGTTCTTGGTTT+TGG | + | chr7_3:51945896-51945915 | None:intergenic | 35.0% |
| TGTTGTGTCCAACAATTCAA+AGG | - | chr7_3:51945913-51945932 | Msa1108720:CDS | 35.0% | |
| TCAATTGAATCAACCCTCAA+AGG | + | chr7_3:51946046-51946065 | None:intergenic | 35.0% | |
| ATATCAGCCAATGTAAATGG+TGG | + | chr7_3:51946121-51946140 | None:intergenic | 35.0% | |
| !! | AGCAATTCCAAAGCATTGTT+GGG | - | chr7_3:51946147-51946166 | Msa1108720:intron | 35.0% |
| ATTGTTGGGTGAAAGATTCA+TGG | - | chr7_3:51946161-51946180 | Msa1108720:CDS | 35.0% | |
| ! | TGCTCAAGGAACTATGTTTT+GGG | - | chr7_3:51946285-51946304 | Msa1108720:intron | 35.0% |
| ! | TTGTTCAAATTTTGCTACGC+AGG | - | chr7_3:51946436-51946455 | Msa1108720:intron | 35.0% |
| !!! | GACTTTTGGGTTGTAGAATT+TGG | - | chr7_3:51946607-51946626 | Msa1108720:intron | 35.0% |
| !! | TTTGGAATTTTCAGTGGTCA+TGG | - | chr7_3:51946668-51946687 | Msa1108720:intron | 35.0% |
| CCAACAACACTGTTAAGATT+AGG | + | chr7_3:51946710-51946729 | None:intergenic | 35.0% | |
| CCTAATCTTAACAGTGTTGT+TGG | - | chr7_3:51946707-51946726 | Msa1108720:intron | 35.0% | |
| TCAATTCTTGTTCCCTATCA+TGG | - | chr7_3:51946746-51946765 | Msa1108720:intron | 35.0% | |
| CATAACATACCATCCATGAT+AGG | + | chr7_3:51946762-51946781 | None:intergenic | 35.0% | |
| !! | AAGACTCGTCATTTTCAACA+TGG | + | chr7_3:51946914-51946933 | None:intergenic | 35.0% |
| ATGTTGAAAATGACGAGTCT+TGG | - | chr7_3:51946913-51946932 | Msa1108720:intron | 35.0% | |
| AGAGAATGTTATCTTCTCAC+CGG | + | chr7_3:51946942-51946961 | None:intergenic | 35.0% | |
| GTTTACAAAGTACGCTTACA+TGG | + | chr7_3:51947054-51947073 | None:intergenic | 35.0% | |
| ! | TTGTTGTTCTTTGAATGCAG+TGG | - | chr7_3:51947391-51947410 | Msa1108720:intron | 35.0% |
| TGTTGTTCTTTGAATGCAGT+GGG | - | chr7_3:51947392-51947411 | Msa1108720:intron | 35.0% | |
| ! | ATCACATCCTTTTTCTCACT+TGG | + | chr7_3:51947474-51947493 | None:intergenic | 35.0% |
| TGATAACTTCTACTGCTTGT+TGG | - | chr7_3:51947490-51947509 | Msa1108720:intron | 35.0% | |
| GTAGGATTGGGATTTACAAT+TGG | - | chr7_3:51947534-51947553 | Msa1108720:intron | 35.0% | |
| ACTCCATAAAGCATGAGTAA+TGG | + | chr7_3:51947567-51947586 | None:intergenic | 35.0% | |
| ! | TTTTGTGATGTGGTTGGATT+TGG | - | chr7_3:51947697-51947716 | Msa1108720:intron | 35.0% |
| ATTTGTCTTCATGACCATGA+TGG | + | chr7_3:51947736-51947755 | None:intergenic | 35.0% | |
| GTCATGAAGACAAATTACCT+TGG | - | chr7_3:51947741-51947760 | Msa1108720:intron | 35.0% | |
| TTGATCCAATAAGCGAGATA+TGG | - | chr7_3:51947861-51947880 | Msa1108720:CDS | 35.0% | |
| TACAGTCATATTTGGCCTAT+CGG | + | chr7_3:51947978-51947997 | None:intergenic | 35.0% | |
| CTAGTCTGTACAGTCATATT+TGG | + | chr7_3:51947986-51948005 | None:intergenic | 35.0% | |
| !!! | TAGACCACCAATGTGTTTTT+TGG | - | chr7_3:51948003-51948022 | Msa1108720:intron | 35.0% |
| CAAACCAAAAAACACATTGG+TGG | + | chr7_3:51948010-51948029 | None:intergenic | 35.0% | |
| GGACAAACCAAAAAACACAT+TGG | + | chr7_3:51948013-51948032 | None:intergenic | 35.0% | |
| ATGACTTTATTGCACTGAGA+CGG | - | chr7_3:51948069-51948088 | Msa1108720:intron | 35.0% | |
| CAGTCGAAACTTTGACTAAA+TGG | + | chr7_3:51948142-51948161 | None:intergenic | 35.0% | |
| TTAGTCAAAGTTTCGACTGT+TGG | - | chr7_3:51948143-51948162 | Msa1108720:intron | 35.0% | |
| GATCATTATGTTAGTGACAC+TGG | - | chr7_3:51948629-51948648 | Msa1108720:CDS | 35.0% | |
| !!! | GAGTTATGGCTTTTGGAACT+TGG | + | chr7_3:51945587-51945606 | None:intergenic | 40.0% |
| !! | GTTGGGTTGAAGAAAGTTGA+TGG | + | chr7_3:51945652-51945671 | None:intergenic | 40.0% |
| CCCAACTCACAGAATTCAAA+AGG | - | chr7_3:51945666-51945685 | Msa1108720:three_prime_UTR | 40.0% | |
| ! | CCCTTTTGAATTCTGTGAGT+TGG | + | chr7_3:51945670-51945689 | None:intergenic | 40.0% |
| CAAGTTGCCATGGAAGATTA+AGG | + | chr7_3:51945830-51945849 | None:intergenic | 40.0% | |
| CTTAATCTTCCATGGCAACT+TGG | - | chr7_3:51945828-51945847 | Msa1108720:three_prime_UTR | 40.0% | |
| TGATAAAACCCAAGTTGCCA+TGG | + | chr7_3:51945840-51945859 | None:intergenic | 40.0% | |
| TTTGGAAATACTGGAGCAAG+TGG | + | chr7_3:51945878-51945897 | None:intergenic | 40.0% | |
| GACACAACAAAACCTGTTCT+TGG | + | chr7_3:51945902-51945921 | None:intergenic | 40.0% | |
| TGAATGTGAGTACTCCTTTG+AGG | - | chr7_3:51946029-51946048 | Msa1108720:CDS | 40.0% | |
| GAATGTGAGTACTCCTTTGA+GGG | - | chr7_3:51946030-51946049 | Msa1108720:CDS | 40.0% | |
| ACAAGAACATGAACAGGAAC+AGG | - | chr7_3:51946066-51946085 | Msa1108720:intron | 40.0% | |
| TTCACCACCACCATTTACAT+TGG | - | chr7_3:51946111-51946130 | Msa1108720:intron | 40.0% | |
| !! | CAGCAATTCCAAAGCATTGT+TGG | - | chr7_3:51946146-51946165 | Msa1108720:intron | 40.0% |
| TCTTTCACCCAACAATGCTT+TGG | + | chr7_3:51946157-51946176 | None:intergenic | 40.0% | |
| ! | GATGGTTTGGCCTCTTTATT+GGG | - | chr7_3:51946261-51946280 | Msa1108720:CDS | 40.0% |
| ! | CTGCTCAAGGAACTATGTTT+TGG | - | chr7_3:51946284-51946303 | Msa1108720:intron | 40.0% |
| ! | TTTTGGGCCCTTTTTGTTCT+TGG | - | chr7_3:51946301-51946320 | Msa1108720:intron | 40.0% |
| TTCTTGTTCCCTATCATGGA+TGG | - | chr7_3:51946750-51946769 | Msa1108720:intron | 40.0% | |
| TTTCAACATGGCCATGATTC+TGG | + | chr7_3:51946902-51946921 | None:intergenic | 40.0% | |
| ATGAGAAAATGGCACATGCA+CGG | + | chr7_3:51947135-51947154 | None:intergenic | 40.0% | |
| GGATATGCAAGCAATGGAAA+AGG | + | chr7_3:51947285-51947304 | None:intergenic | 40.0% | |
| TACACAGGATATGCAAGCAA+TGG | + | chr7_3:51947291-51947310 | None:intergenic | 40.0% | |
| GTTTGGTCCAAGTGAGAAAA+AGG | - | chr7_3:51947464-51947483 | Msa1108720:intron | 40.0% | |
| ! | GAAGGTTTTTGTGATGTGGT+TGG | - | chr7_3:51947691-51947710 | Msa1108720:CDS | 40.0% |
| GACAAATTACCTTGGTATCG+TGG | - | chr7_3:51947749-51947768 | Msa1108720:intron | 40.0% | |
| ATTACCTTGGTATCGTGGAA+AGG | - | chr7_3:51947754-51947773 | Msa1108720:intron | 40.0% | |
| AAAAGACTGTACTGCTACAG+AGG | + | chr7_3:51947805-51947824 | None:intergenic | 40.0% | |
| TGTAGCCATATCTCGCTTAT+TGG | + | chr7_3:51947869-51947888 | None:intergenic | 40.0% | |
| CGAGATATGGCTACATTGAT+CGG | - | chr7_3:51947874-51947893 | Msa1108720:CDS | 40.0% | |
| CAATTGTACCTTGATCCGAT+AGG | - | chr7_3:51947960-51947979 | Msa1108720:intron | 40.0% | |
| ATATTTGGCCTATCGGATCA+AGG | + | chr7_3:51947971-51947990 | None:intergenic | 40.0% | |
| ACAGTCAAGATCTGACTGAA+TGG | + | chr7_3:51948034-51948053 | None:intergenic | 40.0% | |
| CAGATCTTGACTGTTTGATG+AGG | - | chr7_3:51948040-51948059 | Msa1108720:intron | 40.0% | |
| TGACTTTATTGCACTGAGAC+GGG | - | chr7_3:51948070-51948089 | Msa1108720:intron | 40.0% | |
| TAGGAATGGAGCTATCTTAG+AGG | - | chr7_3:51948287-51948306 | Msa1108720:CDS | 40.0% | |
| ACTACTATTGACCGCGATTA+TGG | - | chr7_3:51948317-51948336 | Msa1108720:CDS | 40.0% | |
| TGACATGAGTTCCAATGTCA+TGG | + | chr7_3:51948361-51948380 | None:intergenic | 40.0% | |
| AGTGTGGAATTTGAGGGAAA+AGG | + | chr7_3:51948391-51948410 | None:intergenic | 40.0% | |
| ! | GGTGATAGTGTGGAATTTGA+GGG | + | chr7_3:51948397-51948416 | None:intergenic | 40.0% |
| ! | AGGTGATAGTGTGGAATTTG+AGG | + | chr7_3:51948398-51948417 | None:intergenic | 40.0% |
| AGATACTCACAGCTTCAACT+AGG | + | chr7_3:51948418-51948437 | None:intergenic | 40.0% | |
| !! | TTTGCTTTGTTTGCAGACTG+AGG | - | chr7_3:51948508-51948527 | Msa1108720:CDS | 40.0% |
| CCAATAAGGTGAAAAGGAAG+AGG | + | chr7_3:51948584-51948603 | None:intergenic | 40.0% | |
| ! | CCTCTTCCTTTTCACCTTAT+TGG | - | chr7_3:51948581-51948600 | Msa1108720:CDS | 40.0% |
| ! | AGAATGTGTTGGTGGGTATA+AGG | - | chr7_3:51948800-51948819 | Msa1108720:five_prime_UTR | 40.0% |
| CTGTGACCCTTAATCTTCCA+TGG | - | chr7_3:51945820-51945839 | Msa1108720:three_prime_UTR | 45.0% | |
| GAGTTACCAGAGTTTGATCC+TGG | - | chr7_3:51946088-51946107 | Msa1108720:intron | 45.0% | |
| TCAGCCAATGTAAATGGTGG+TGG | + | chr7_3:51946118-51946137 | None:intergenic | 45.0% | |
| ! | GGATGGTTTGGCCTCTTTAT+TGG | - | chr7_3:51946260-51946279 | Msa1108720:CDS | 45.0% |
| AGGACTCATCACCAGAATCA+TGG | - | chr7_3:51946888-51946907 | Msa1108720:intron | 45.0% | |
| AAATGACGAGTCTTGGCATC+CGG | - | chr7_3:51946920-51946939 | Msa1108720:intron | 45.0% | |
| ! | TACTGCTTGTTGGACTGCTA+TGG | - | chr7_3:51947500-51947519 | Msa1108720:intron | 45.0% |
| GTGGCATTGCTTGTAGGATT+GGG | - | chr7_3:51947522-51947541 | Msa1108720:intron | 45.0% | |
| GTGACTTACTTGCACCATCA+TGG | - | chr7_3:51947719-51947738 | Msa1108720:intron | 45.0% | |
| AGTACCTTTCCACGATACCA+AGG | + | chr7_3:51947761-51947780 | None:intergenic | 45.0% | |
| !!! | CGGATGACTGCTAGTCTTTT+TGG | - | chr7_3:51947894-51947913 | Msa1108720:intron | 45.0% |
| GAATGGAGCTATCTTAGAGG+TGG | - | chr7_3:51948290-51948309 | Msa1108720:CDS | 45.0% | |
| CTATTGACCGCGATTATGGA+TGG | - | chr7_3:51948321-51948340 | Msa1108720:CDS | 45.0% | |
| ! | GCTTCAACTAGGTGATAGTG+TGG | + | chr7_3:51948407-51948426 | None:intergenic | 45.0% |
| ! | GGAAGAGGAGCTGATTTCTT+TGG | + | chr7_3:51948569-51948588 | None:intergenic | 45.0% |
| GGTGAACCAGGATCAAACTC+TGG | + | chr7_3:51946097-51946116 | None:intergenic | 50.0% | |
| !! | GTAAATGGTGGTGGTGAACC+AGG | + | chr7_3:51946109-51946128 | None:intergenic | 50.0% |
| CCTTGAGCAGCCCAATAAAG+AGG | + | chr7_3:51946274-51946293 | None:intergenic | 50.0% | |
| CCTCTTTATTGGGCTGCTCA+AGG | - | chr7_3:51946271-51946290 | Msa1108720:CDS | 50.0% | |
| AAATGGGAACCAGTCTTCCC+AGG | + | chr7_3:51947426-51947445 | None:intergenic | 50.0% | |
| GTCACTGCTGGGATGGAAAT+GGG | + | chr7_3:51947442-51947461 | None:intergenic | 50.0% | |
| AGTCACTGCTGGGATGGAAA+TGG | + | chr7_3:51947443-51947462 | None:intergenic | 50.0% | |
| CAAACAAGTCACTGCTGGGA+TGG | + | chr7_3:51947449-51947468 | None:intergenic | 50.0% | |
| !! | CATCCCAGCAGTGACTTGTT+TGG | - | chr7_3:51947447-51947466 | Msa1108720:intron | 50.0% |
| GGACCAAACAAGTCACTGCT+GGG | + | chr7_3:51947453-51947472 | None:intergenic | 50.0% | |
| TGGACCAAACAAGTCACTGC+TGG | + | chr7_3:51947454-51947473 | None:intergenic | 50.0% | |
| ! | TGCTTGTTGGACTGCTATGG+TGG | - | chr7_3:51947503-51947522 | Msa1108720:intron | 50.0% |
| GCTATGGTGGCATTGCTTGT+AGG | - | chr7_3:51947516-51947535 | Msa1108720:intron | 50.0% | |
| GGTGGCATTGCTTGTAGGAT+TGG | - | chr7_3:51947521-51947540 | Msa1108720:intron | 50.0% | |
| TGCGGCCATATTTCGTCTGT+TGG | + | chr7_3:51948188-51948207 | None:intergenic | 50.0% | |
| CAGACGAAATATGGCCGCAT+TGG | - | chr7_3:51948189-51948208 | Msa1108720:intron | 50.0% | |
| ! | CGAAATATGGCCGCATTGGT+TGG | - | chr7_3:51948193-51948212 | Msa1108720:intron | 50.0% |
| !! | ATATGGCCGCATTGGTTGGA+CGG | - | chr7_3:51948197-51948216 | Msa1108720:intron | 50.0% |
| ACCAGTCTTCCCAGGACTTC+TGG | + | chr7_3:51947418-51947437 | None:intergenic | 55.0% | |
| TTGCAGCCGTCCAACCAATG+CGG | + | chr7_3:51948206-51948225 | None:intergenic | 55.0% | |
| GTTTGCAGACTGAGGCAGCA+AGG | - | chr7_3:51948516-51948535 | Msa1108720:CDS | 55.0% | |
| ATGCAGTGGGCCAGAAGTCC+TGG | - | chr7_3:51947405-51947424 | Msa1108720:intron | 60.0% | |
| TGCAGTGGGCCAGAAGTCCT+GGG | - | chr7_3:51947406-51947425 | Msa1108720:intron | 60.0% | |
| GCCAGAAGTCCTGGGAAGAC+TGG | - | chr7_3:51947414-51947433 | Msa1108720:intron | 60.0% | |
| ! | CTGAGACGGGCATCGCTAAC+TGG | - | chr7_3:51948083-51948102 | Msa1108720:intron | 60.0% |
| GAGGCAGCAAGGCCTGTGTT+TGG | - | chr7_3:51948527-51948546 | Msa1108720:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 51945580 | 51949006 | 51945580 | ID=Msa1108720;Name=Msa1108720 |
| chr7_3 | mRNA | 51945580 | 51949006 | 51945580 | ID=Msa1108720-mRNA-1;Parent=Msa1108720;Name=Msa1108720-mRNA-1;_AED=0.12;_eAED=0.12;_QI=233|1|1|1|0.87|0.77|9|297|444 |
| chr7_3 | exon | 51945580 | 51946062 | 51945580 | ID=Msa1108720-mRNA-1:exon:10730;Parent=Msa1108720-mRNA-1 |
| chr7_3 | exon | 51946159 | 51946296 | 51946159 | ID=Msa1108720-mRNA-1:exon:10729;Parent=Msa1108720-mRNA-1 |
| chr7_3 | exon | 51946811 | 51946891 | 51946811 | ID=Msa1108720-mRNA-1:exon:10728;Parent=Msa1108720-mRNA-1 |
| chr7_3 | exon | 51946990 | 51947175 | 51946990 | ID=Msa1108720-mRNA-1:exon:10727;Parent=Msa1108720-mRNA-1 |
| chr7_3 | exon | 51947272 | 51947364 | 51947272 | ID=Msa1108720-mRNA-1:exon:10726;Parent=Msa1108720-mRNA-1 |
| chr7_3 | exon | 51947645 | 51947711 | 51947645 | ID=Msa1108720-mRNA-1:exon:10725;Parent=Msa1108720-mRNA-1 |
| chr7_3 | exon | 51947815 | 51947904 | 51947815 | ID=Msa1108720-mRNA-1:exon:10724;Parent=Msa1108720-mRNA-1 |
| chr7_3 | exon | 51948254 | 51948770 | 51948254 | ID=Msa1108720-mRNA-1:exon:10723;Parent=Msa1108720-mRNA-1 |
| chr7_3 | exon | 51948797 | 51949006 | 51948797 | ID=Msa1108720-mRNA-1:exon:10722;Parent=Msa1108720-mRNA-1 |
| chr7_3 | five_prime_UTR | 51948797 | 51949006 | 51948797 | ID=Msa1108720-mRNA-1:five_prime_utr;Parent=Msa1108720-mRNA-1 |
| chr7_3 | five_prime_UTR | 51948748 | 51948770 | 51948748 | ID=Msa1108720-mRNA-1:five_prime_utr;Parent=Msa1108720-mRNA-1 |
| chr7_3 | CDS | 51948254 | 51948747 | 51948254 | ID=Msa1108720-mRNA-1:cds;Parent=Msa1108720-mRNA-1 |
| chr7_3 | CDS | 51947815 | 51947904 | 51947815 | ID=Msa1108720-mRNA-1:cds;Parent=Msa1108720-mRNA-1 |
| chr7_3 | CDS | 51947645 | 51947711 | 51947645 | ID=Msa1108720-mRNA-1:cds;Parent=Msa1108720-mRNA-1 |
| chr7_3 | CDS | 51947272 | 51947364 | 51947272 | ID=Msa1108720-mRNA-1:cds;Parent=Msa1108720-mRNA-1 |
| chr7_3 | CDS | 51946990 | 51947175 | 51946990 | ID=Msa1108720-mRNA-1:cds;Parent=Msa1108720-mRNA-1 |
| chr7_3 | CDS | 51946811 | 51946891 | 51946811 | ID=Msa1108720-mRNA-1:cds;Parent=Msa1108720-mRNA-1 |
| chr7_3 | CDS | 51946159 | 51946296 | 51946159 | ID=Msa1108720-mRNA-1:cds;Parent=Msa1108720-mRNA-1 |
| chr7_3 | CDS | 51945877 | 51946062 | 51945877 | ID=Msa1108720-mRNA-1:cds;Parent=Msa1108720-mRNA-1 |
| chr7_3 | three_prime_UTR | 51945580 | 51945876 | 51945580 | ID=Msa1108720-mRNA-1:three_prime_utr;Parent=Msa1108720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
